Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419910 | sp|Q9SVU0|YUC8_ARATH | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419910 | G7KZI9 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa1419910 | 0.807548 | 4.790442e-50 | -8.615850e-47 |
| Msa0011040 | Msa1419910 | 0.812570 | 3.967029e-51 | -8.615850e-47 |
| Msa0014590 | Msa1419910 | 0.819509 | 1.118755e-52 | -8.615850e-47 |
| Msa0048380 | Msa1419910 | 0.809583 | 1.760995e-50 | -8.615850e-47 |
| Msa0063540 | Msa1419910 | 0.810935 | 8.998777e-51 | -8.615850e-47 |
| Msa0073110 | Msa1419910 | 0.809278 | 2.047313e-50 | -8.615850e-47 |
| Msa1355340 | Msa1419910 | 0.814037 | 1.889467e-51 | -8.615850e-47 |
| Msa1357840 | Msa1419910 | 0.809212 | 2.116080e-50 | -8.615850e-47 |
| Msa1419910 | Msa1455360 | 0.829790 | 4.226075e-55 | -8.615850e-47 |
| Msa0606600 | Msa1419910 | 0.812219 | 4.733747e-51 | -8.615850e-47 |
| Msa0643190 | Msa1419910 | 0.815956 | 7.088482e-52 | -8.615850e-47 |
| Msa0647300 | Msa1419910 | 0.813384 | 2.630069e-51 | -8.615850e-47 |
| Msa0670360 | Msa1419910 | 0.804197 | 2.424378e-49 | -8.615850e-47 |
| Msa0686830 | Msa1419910 | 0.814167 | 1.767986e-51 | -8.615850e-47 |
| Msa0751960 | Msa1419910 | 0.817125 | 3.878786e-52 | -8.615850e-47 |
| Msa0806930 | Msa1419910 | 0.812961 | 3.257989e-51 | -8.615850e-47 |
| Msa0814160 | Msa1419910 | 0.836349 | 9.857818e-57 | -8.615850e-47 |
| Msa0822410 | Msa1419910 | 0.811219 | 7.812235e-51 | -8.615850e-47 |
| Msa0831890 | Msa1419910 | 0.807579 | 4.718023e-50 | -8.615850e-47 |
| Msa0150920 | Msa1419910 | 0.813623 | 2.330294e-51 | -8.615850e-47 |
| Msa0190670 | Msa1419910 | 0.806414 | 8.323702e-50 | -8.615850e-47 |
| Msa0190890 | Msa1419910 | 0.800480 | 1.413271e-48 | -8.615850e-47 |
| Msa0194230 | Msa1419910 | 0.801764 | 7.721108e-49 | -8.615850e-47 |
| Msa0195580 | Msa1419910 | 0.809584 | 1.760160e-50 | -8.615850e-47 |
| Msa0233210 | Msa1419910 | 0.806631 | 7.487868e-50 | -8.615850e-47 |
| Msa0366510 | Msa1419910 | 0.813897 | 2.028415e-51 | -8.615850e-47 |
| Msa0374040 | Msa1419910 | 0.822457 | 2.344778e-53 | -8.615850e-47 |
| Msa0380680 | Msa1419910 | 0.801170 | 1.021422e-48 | -8.615850e-47 |
| Msa0386910 | Msa1419910 | 0.804332 | 2.273082e-49 | -8.615850e-47 |
| Msa0423220 | Msa1419910 | 0.806305 | 8.772505e-50 | -8.615850e-47 |
| Msa0424540 | Msa1419910 | 0.801798 | 7.595204e-49 | -8.615850e-47 |
| Msa0464310 | Msa1419910 | 0.817135 | 3.858123e-52 | -8.615850e-47 |
| Msa0471390 | Msa1419910 | 0.806564 | 7.735823e-50 | -8.615850e-47 |
| Msa0996990 | Msa1419910 | 0.812934 | 3.301793e-51 | -8.615850e-47 |
| Msa1002820 | Msa1419910 | 0.820854 | 5.505430e-53 | -8.615850e-47 |
| Msa1006170 | Msa1419910 | 0.810044 | 1.401551e-50 | -8.615850e-47 |
| Msa1022490 | Msa1419910 | 0.811705 | 6.125529e-51 | -8.615850e-47 |
| Msa1022510 | Msa1419910 | 0.807995 | 3.849608e-50 | -8.615850e-47 |
| Msa1030320 | Msa1419910 | 0.800736 | 1.252763e-48 | -8.615850e-47 |
| Msa1048390 | Msa1419910 | 0.801350 | 9.385496e-49 | -8.615850e-47 |
| Msa1061670 | Msa1419910 | 0.821149 | 4.706582e-53 | -8.615850e-47 |
| Msa1078090 | Msa1419910 | 0.986693 | 1.193657e-167 | -8.615850e-47 |
| Msa1079820 | Msa1419910 | 0.809389 | 1.938917e-50 | -8.615850e-47 |
| Msa1087370 | Msa1419910 | 0.804981 | 1.664104e-49 | -8.615850e-47 |
| Msa1087380 | Msa1419910 | 0.803647 | 3.155505e-49 | -8.615850e-47 |
| Msa1106680 | Msa1419910 | 0.826485 | 2.643857e-54 | -8.615850e-47 |
| Msa1106960 | Msa1419910 | 0.820158 | 7.950230e-53 | -8.615850e-47 |
| Msa0261400 | Msa1419910 | 0.803432 | 3.495333e-49 | -8.615850e-47 |
| Msa0274250 | Msa1419910 | 0.806452 | 8.169684e-50 | -8.615850e-47 |
| Msa0281190 | Msa1419910 | 0.828371 | 9.333422e-55 | -8.615850e-47 |
| Msa0299030 | Msa1419910 | 0.813642 | 2.308880e-51 | -8.615850e-47 |
| Msa0307040 | Msa1419910 | 0.815332 | 9.761922e-52 | -8.615850e-47 |
| Msa0348370 | Msa1419910 | 0.800134 | 1.661953e-48 | -8.615850e-47 |
| Msa0358470 | Msa1419910 | 0.800186 | 1.621873e-48 | -8.615850e-47 |
| Msa1123250 | Msa1419910 | 0.967387 | 3.300532e-127 | -8.615850e-47 |
| Msa1147010 | Msa1419910 | 0.818128 | 2.304280e-52 | -8.615850e-47 |
| Msa1156240 | Msa1419910 | 0.803378 | 3.587886e-49 | -8.615850e-47 |
| Msa1157210 | Msa1419910 | 0.801784 | 7.645763e-49 | -8.615850e-47 |
| Msa1167960 | Msa1419910 | 0.807018 | 6.204912e-50 | -8.615850e-47 |
| Msa1181090 | Msa1419910 | 0.806529 | 7.868982e-50 | -8.615850e-47 |
| Msa0490060 | Msa1419910 | 0.802698 | 4.958513e-49 | -8.615850e-47 |
| Msa0515130 | Msa1419910 | 0.805966 | 1.033937e-49 | -8.615850e-47 |
| Msa0523720 | Msa1419910 | 0.823082 | 1.677421e-53 | -8.615850e-47 |
| Msa0535570 | Msa1419910 | 0.813708 | 2.232510e-51 | -8.615850e-47 |
| Msa0591490 | Msa1419910 | 0.805015 | 1.636849e-49 | -8.615850e-47 |
| Msa0854840 | Msa1419910 | 0.817467 | 3.248030e-52 | -8.615850e-47 |
| Msa0861730 | Msa1419910 | 0.831551 | 1.565846e-55 | -8.615850e-47 |
| Msa0913550 | Msa1419910 | 0.808573 | 2.898750e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419910 | MtrunA17_Chr7g0262591 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| Msa1419910 | MtrunA17_Chr1g0182991 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
| Msa1419910 | MtrunA17_Chr7g0262471 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
| Msa1419910 | MtrunA17_Chr1g0169111 | 72.642 | 424 | 107 | 2 | 1 | 416 | 79 | 501 | 0.0 | 640 |
| Msa1419910 | MtrunA17_Chr1g0148801 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 4.02e-176 | 497 |
| Msa1419910 | MtrunA17_Chr1g0147221 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 9.71e-174 | 492 |
| Msa1419910 | MtrunA17_Chr3g0139441 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 7.24e-171 | 484 |
| Msa1419910 | MtrunA17_Chr6g0485621 | 56.391 | 399 | 160 | 5 | 9 | 395 | 16 | 412 | 1.38e-167 | 476 |
| Msa1419910 | MtrunA17_Chr7g0268621 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 5.89e-120 | 353 |
| Msa1419910 | MtrunA17_Chr7g0268611 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 2.86e-114 | 339 |
| Msa1419910 | MtrunA17_Chr5g0412881 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 8.39e-114 | 338 |
| Msa1419910 | MtrunA17_Chr8g0350371 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.51e-112 | 335 |
| Msa1419910 | MtrunA17_Chr3g0125711 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.27e-112 | 335 |
| Msa1419910 | MtrunA17_Chr3g0125701 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 4.49e-111 | 331 |
| Msa1419910 | MtrunA17_Chr3g0125691 | 42.895 | 373 | 201 | 3 | 25 | 390 | 8 | 375 | 1.93e-109 | 327 |
| Msa1419910 | MtrunA17_Chr4g0025641 | 48.241 | 199 | 97 | 2 | 25 | 217 | 17 | 215 | 5.90e-61 | 197 |
| Msa1419910 | MtrunA17_Chr4g0025651 | 41.667 | 156 | 89 | 2 | 236 | 390 | 15 | 169 | 3.62e-36 | 131 |
| Msa1419910 | MtrunA17_Chr3g0129991 | 40.336 | 119 | 65 | 1 | 82 | 194 | 1 | 119 | 4.28e-24 | 96.3 |
| Msa1419910 | MtrunA17_Chr3g0091441 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.51e-11 | 65.1 |
| Msa1419910 | MtrunA17_Chr7g0250581 | 86.667 | 30 | 4 | 0 | 84 | 113 | 1 | 30 | 4.87e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1419910 | AT4G28720.1 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| Msa1419910 | AT5G43890.1 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
| Msa1419910 | AT1G04180.1 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
| Msa1419910 | AT1G04610.1 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
| Msa1419910 | AT2G33230.1 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
| Msa1419910 | AT5G25620.1 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.61e-178 | 503 |
| Msa1419910 | AT5G25620.2 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.25e-177 | 501 |
| Msa1419910 | AT5G11320.1 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.97e-173 | 490 |
| Msa1419910 | AT4G32540.1 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.37e-167 | 476 |
| Msa1419910 | AT4G32540.2 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.72e-166 | 472 |
| Msa1419910 | AT4G13260.1 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.57e-162 | 462 |
| Msa1419910 | AT5G11320.2 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.68e-144 | 416 |
| Msa1419910 | AT4G13260.2 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.49e-125 | 364 |
| Msa1419910 | AT1G48910.1 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 4.06e-119 | 352 |
| Msa1419910 | AT1G21430.1 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.90e-117 | 347 |
| Msa1419910 | AT4G13260.3 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.14e-110 | 326 |
| Msa1419910 | AT1G65860.1 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.90e-15 | 77.0 |
| Msa1419910 | AT5G07800.1 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.83e-13 | 70.1 |
| Msa1419910 | AT5G45180.1 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.91e-12 | 67.8 |
Find 94 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | tig0024732:-54734 | None:intergenic |
| TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | tig0024732:+54303 | Msa1419910:CDS |
| GTTAAAATTGCACAAGATAT+TGG | 0.210104 | tig0024732:+55822 | Msa1419910:CDS |
| TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | tig0024732:-54530 | None:intergenic |
| CCATGTGGAAATGGCATCTT+TGG | 0.241543 | tig0024732:-55726 | None:intergenic |
| TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | tig0024732:+55783 | Msa1419910:CDS |
| CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | tig0024732:+55378 | Msa1419910:CDS |
| CACAAGATATTGGAAAAGTT+TGG | 0.264533 | tig0024732:+55832 | Msa1419910:CDS |
| GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | tig0024732:+54827 | Msa1419910:CDS |
| ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | tig0024732:+55371 | Msa1419910:CDS |
| GTGCTACCTAGAGAAATATT+TGG | 0.304479 | tig0024732:+55031 | Msa1419910:CDS |
| GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | tig0024732:-54482 | None:intergenic |
| TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | tig0024732:+54304 | Msa1419910:CDS |
| AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | tig0024732:+55210 | Msa1419910:CDS |
| GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | tig0024732:+55307 | Msa1419910:CDS |
| CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | tig0024732:+54311 | Msa1419910:CDS |
| CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | tig0024732:-55735 | None:intergenic |
| GAACACACTCGTTGAATTGC+GGG | 0.355699 | tig0024732:-54598 | None:intergenic |
| CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | tig0024732:+55744 | Msa1419910:CDS |
| TATGCTTGTGATTACAAGTC+AGG | 0.381966 | tig0024732:+54776 | Msa1419910:CDS |
| GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | tig0024732:+54812 | Msa1419910:CDS |
| GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | tig0024732:-54518 | None:intergenic |
| CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | tig0024732:-54539 | None:intergenic |
| TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | tig0024732:-54503 | None:intergenic |
| TCATCATGCTTTACCTTCCA+TGG | 0.420618 | tig0024732:+54877 | Msa1419910:CDS |
| TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | tig0024732:+55165 | Msa1419910:CDS |
| AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | tig0024732:+54818 | Msa1419910:CDS |
| ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | tig0024732:+54341 | Msa1419910:CDS |
| AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | tig0024732:-55365 | None:intergenic |
| ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | tig0024732:+55286 | Msa1419910:CDS |
| TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | tig0024732:+54892 | Msa1419910:CDS |
| ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | tig0024732:+54669 | Msa1419910:CDS |
| AACTTCAAAGGACCCATTGA+AGG | 0.449923 | tig0024732:-55178 | None:intergenic |
| TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | tig0024732:-54538 | None:intergenic |
| CTGATTGCATAGCATCACTA+TGG | 0.465618 | tig0024732:+54423 | Msa1419910:CDS |
| GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | tig0024732:-54529 | None:intergenic |
| TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | tig0024732:-54512 | None:intergenic |
| TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | tig0024732:+55083 | Msa1419910:CDS |
| GATATTCCAAATATTTCTCT+AGG | 0.498261 | tig0024732:-55037 | None:intergenic |
| TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | tig0024732:-55190 | None:intergenic |
| AGGTGGCTTGTTGTTGCTAC+CGG | 0.499132 | tig0024732:+54689 | Msa1419910:CDS |
| GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | tig0024732:+54743 | Msa1419910:CDS |
| GCCATTTCCACATGGTTGGA+AGG | 0.503171 | tig0024732:+55734 | Msa1419910:CDS |
| AGATGCCATTTCCACATGGT+TGG | 0.512278 | tig0024732:+55730 | Msa1419910:CDS |
| GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | tig0024732:+55346 | Msa1419910:CDS |
| AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | tig0024732:-55223 | None:intergenic |
| GTCAATGGACCTGTGATCAT+AGG | 0.520464 | tig0024732:+54326 | Msa1419910:CDS |
| CTTAACCCTCCACAATCCAC+TGG | 0.522153 | tig0024732:-54642 | None:intergenic |
| CATGTGGAAATGGCATCTTT+GGG | 0.531409 | tig0024732:-55725 | None:intergenic |
| AATTCAGGACTATATGCTGT+AGG | 0.534469 | tig0024732:+55759 | Msa1419910:CDS |
| ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | tig0024732:+54777 | Msa1419910:CDS |
| TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | tig0024732:+54725 | Msa1419910:CDS |
| GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | tig0024732:+55166 | Msa1419910:CDS |
| AGGTACAACATTTATGTCAC+CGG | 0.553155 | tig0024732:-55260 | None:intergenic |
| CCATTTCCACATGGTTGGAA+GGG | 0.558378 | tig0024732:+55735 | Msa1419910:CDS |
| ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | tig0024732:-55385 | None:intergenic |
| TGAACACACTCGTTGAATTG+CGG | 0.561991 | tig0024732:-54599 | None:intergenic |
| GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | tig0024732:-54508 | None:intergenic |
| ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | tig0024732:+55272 | Msa1419910:CDS |
| GGACCTGTGATCATAGGTGC+AGG | 0.569251 | tig0024732:+54332 | Msa1419910:CDS |
| TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | tig0024732:+55071 | Msa1419910:CDS |
| GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | tig0024732:+55241 | Msa1419910:CDS |
| GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | tig0024732:+55774 | Msa1419910:CDS |
| GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | tig0024732:-54356 | None:intergenic |
| GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | tig0024732:-54456 | None:intergenic |
| ATTCAGGACTATATGCTGTA+GGG | 0.590290 | tig0024732:+55760 | Msa1419910:CDS |
| TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | tig0024732:+55193 | Msa1419910:CDS |
| CCAAAGATGCCATTTCCACA+TGG | 0.597297 | tig0024732:+55726 | Msa1419910:CDS |
| GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | tig0024732:+54374 | Msa1419910:CDS |
| TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | tig0024732:+54832 | Msa1419910:CDS |
| AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | tig0024732:+54672 | Msa1419910:CDS |
| GGTGACATAAATGTTGTACC+TGG | 0.608839 | tig0024732:+55262 | Msa1419910:CDS |
| TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | tig0024732:-55384 | None:intergenic |
| CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | tig0024732:+55775 | Msa1419910:CDS |
| ATGATGAAACCAGTGGATTG+TGG | 0.614186 | tig0024732:+54633 | Msa1419910:CDS |
| GGACCTGCACCTATGATCAC+AGG | 0.615165 | tig0024732:-54335 | None:intergenic |
| GTCCATTGACCCAAATGCAA+CGG | 0.615198 | tig0024732:-54313 | None:intergenic |
| GTGGTTACCACTTTGGATTG+TGG | 0.615333 | tig0024732:+55090 | Msa1419910:CDS |
| AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | tig0024732:-54402 | None:intergenic |
| AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | tig0024732:+54352 | Msa1419910:CDS |
| GAATTTCCCTTCCAACCATG+TGG | 0.635313 | tig0024732:-55741 | None:intergenic |
| GAGCTACGAACAACCATGGA+AGG | 0.637115 | tig0024732:-54890 | None:intergenic |
| GCAACGTCTATGACAAGCAG+TGG | 0.639607 | tig0024732:-55886 | None:intergenic |
| AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | tig0024732:-55097 | None:intergenic |
| TACCGAGCTACGAACAACCA+TGG | 0.644442 | tig0024732:-54894 | None:intergenic |
| CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | tig0024732:+54375 | Msa1419910:CDS |
| AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | tig0024732:+54376 | Msa1419910:CDS |
| GCTAAGTATGATGAAACCAG+TGG | 0.647995 | tig0024732:+54626 | Msa1419910:CDS |
| AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | tig0024732:-54295 | None:intergenic |
| GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | tig0024732:-55372 | None:intergenic |
| GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | tig0024732:-54401 | None:intergenic |
| ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | tig0024732:+54636 | Msa1419910:CDS |
| GAACACAGAAGGAAAGACAC+CGG | 0.709214 | tig0024732:+55204 | Msa1419910:CDS |
| TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | tig0024732:+54637 | Msa1419910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTAAATTTTTTTAACTT+AGG | + | tig0024732:54959-54978 | Msa1419910:intron | 10.0% |
| !!! | TCAAATTTAAAACTTTTTTA+AGG | + | tig0024732:55577-55596 | Msa1419910:intron | 10.0% |
| !!! | ATAGTAAATTTTTTTAACTT+AGG | + | tig0024732:54959-54978 | Msa1419910:intron | 10.0% |
| !!! | TCAAATTTAAAACTTTTTTA+AGG | + | tig0024732:55577-55596 | Msa1419910:intron | 10.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | + | tig0024732:55660-55679 | Msa1419910:intron | 15.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | + | tig0024732:55660-55679 | Msa1419910:intron | 15.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | - | tig0024732:54541-54560 | None:intergenic | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | + | tig0024732:55054-55073 | Msa1419910:CDS | 20.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | + | tig0024732:55286-55305 | Msa1419910:CDS | 20.0% |
| !!! | TAAAACTTTTTTAAGGCATA+TGG | + | tig0024732:55584-55603 | Msa1419910:intron | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | + | tig0024732:55674-55693 | Msa1419910:intron | 20.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | - | tig0024732:54541-54560 | None:intergenic | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | + | tig0024732:55054-55073 | Msa1419910:CDS | 20.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | + | tig0024732:55286-55305 | Msa1419910:CDS | 20.0% |
| !!! | TAAAACTTTTTTAAGGCATA+TGG | + | tig0024732:55584-55603 | Msa1419910:intron | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | + | tig0024732:55674-55693 | Msa1419910:intron | 20.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | - | tig0024732:54542-54561 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | - | tig0024732:54568-54587 | None:intergenic | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | + | tig0024732:54978-54997 | Msa1419910:intron | 25.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | + | tig0024732:54979-54998 | Msa1419910:intron | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | + | tig0024732:55003-55022 | Msa1419910:intron | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | - | tig0024732:55040-55059 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | + | tig0024732:55127-55146 | Msa1419910:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | + | tig0024732:55155-55174 | Msa1419910:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | - | tig0024732:55283-55302 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | + | tig0024732:55822-55841 | Msa1419910:CDS | 25.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | - | tig0024732:54542-54561 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | - | tig0024732:54568-54587 | None:intergenic | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | + | tig0024732:54978-54997 | Msa1419910:intron | 25.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | + | tig0024732:54979-54998 | Msa1419910:intron | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | + | tig0024732:55003-55022 | Msa1419910:intron | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | - | tig0024732:55040-55059 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | + | tig0024732:55127-55146 | Msa1419910:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | + | tig0024732:55155-55174 | Msa1419910:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | - | tig0024732:55283-55302 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | + | tig0024732:55822-55841 | Msa1419910:CDS | 25.0% |
| ATGAAGTTGAGTACATTTGT+AGG | + | tig0024732:54669-54688 | Msa1419910:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | + | tig0024732:54791-54810 | Msa1419910:CDS | 30.0% |
| ATTAATACTGACACAGATAC+CGG | - | tig0024732:54936-54955 | None:intergenic | 30.0% | |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | + | tig0024732:55116-55135 | Msa1419910:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | + | tig0024732:55126-55145 | Msa1419910:CDS | 30.0% |
| TTTGGTTATGTTATACAGGA+AGG | + | tig0024732:55678-55697 | Msa1419910:intron | 30.0% | |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | + | tig0024732:55699-55718 | Msa1419910:CDS | 30.0% |
| CACAAGATATTGGAAAAGTT+TGG | + | tig0024732:55832-55851 | Msa1419910:CDS | 30.0% | |
| ATGAAGTTGAGTACATTTGT+AGG | + | tig0024732:54669-54688 | Msa1419910:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | + | tig0024732:54791-54810 | Msa1419910:CDS | 30.0% |
| ATTAATACTGACACAGATAC+CGG | - | tig0024732:54936-54955 | None:intergenic | 30.0% | |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | + | tig0024732:55116-55135 | Msa1419910:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | + | tig0024732:55126-55145 | Msa1419910:CDS | 30.0% |
| TTTGGTTATGTTATACAGGA+AGG | + | tig0024732:55678-55697 | Msa1419910:intron | 30.0% | |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | + | tig0024732:55699-55718 | Msa1419910:CDS | 30.0% |
| CACAAGATATTGGAAAAGTT+TGG | + | tig0024732:55832-55851 | Msa1419910:CDS | 30.0% | |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | - | tig0024732:54481-54500 | None:intergenic | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | - | tig0024732:54485-54504 | None:intergenic | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | - | tig0024732:54532-54551 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | - | tig0024732:54533-54552 | None:intergenic | 35.0% |
| AAGTTGAGTACATTTGTAGG+TGG | + | tig0024732:54672-54691 | Msa1419910:CDS | 35.0% | |
| ! | TGTGTTACTCCTGAAATTGA+AGG | + | tig0024732:54725-54744 | Msa1419910:CDS | 35.0% |
| TCAGAAAGTCCTTCAATTTC+AGG | - | tig0024732:54737-54756 | None:intergenic | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | + | tig0024732:54743-54762 | Msa1419910:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | + | tig0024732:54776-54795 | Msa1419910:CDS | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | + | tig0024732:54777-54796 | Msa1419910:CDS | 35.0% | |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | + | tig0024732:54812-54831 | Msa1419910:CDS | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | + | tig0024732:54818-54837 | Msa1419910:CDS | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | + | tig0024732:54914-54933 | Msa1419910:intron | 35.0% |
| GTGCTACCTAGAGAAATATT+TGG | + | tig0024732:55031-55050 | Msa1419910:CDS | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | + | tig0024732:55145-55164 | Msa1419910:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | - | tig0024732:55193-55212 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | + | tig0024732:55193-55212 | Msa1419910:CDS | 35.0% | |
| !! | GCTTTGGAGAAAATTAGATC+CGG | + | tig0024732:55241-55260 | Msa1419910:CDS | 35.0% |
| AGGTACAACATTTATGTCAC+CGG | - | tig0024732:55263-55282 | None:intergenic | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | + | tig0024732:55272-55291 | Msa1419910:CDS | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | + | tig0024732:55465-55484 | Msa1419910:intron | 35.0% | |
| ! | TCCGACAACAAAGATTTTAC+CGG | + | tig0024732:55518-55537 | Msa1419910:intron | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | - | tig0024732:55522-55541 | None:intergenic | 35.0% |
| ! | ACATGTCTTTTTCTATCCTC+CGG | - | tig0024732:55540-55559 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | - | tig0024732:55715-55734 | None:intergenic | 35.0% |
| AATTCAGGACTATATGCTGT+AGG | + | tig0024732:55759-55778 | Msa1419910:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | + | tig0024732:55760-55779 | Msa1419910:CDS | 35.0% | |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | - | tig0024732:54481-54500 | None:intergenic | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | - | tig0024732:54485-54504 | None:intergenic | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | - | tig0024732:54532-54551 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | - | tig0024732:54533-54552 | None:intergenic | 35.0% |
| AAGTTGAGTACATTTGTAGG+TGG | + | tig0024732:54672-54691 | Msa1419910:CDS | 35.0% | |
| ! | TGTGTTACTCCTGAAATTGA+AGG | + | tig0024732:54725-54744 | Msa1419910:CDS | 35.0% |
| TCAGAAAGTCCTTCAATTTC+AGG | - | tig0024732:54737-54756 | None:intergenic | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | + | tig0024732:54743-54762 | Msa1419910:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | + | tig0024732:54776-54795 | Msa1419910:CDS | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | + | tig0024732:54777-54796 | Msa1419910:CDS | 35.0% | |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | + | tig0024732:54812-54831 | Msa1419910:CDS | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | + | tig0024732:54818-54837 | Msa1419910:CDS | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | + | tig0024732:54914-54933 | Msa1419910:intron | 35.0% |
| GTGCTACCTAGAGAAATATT+TGG | + | tig0024732:55031-55050 | Msa1419910:CDS | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | + | tig0024732:55145-55164 | Msa1419910:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | - | tig0024732:55193-55212 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | + | tig0024732:55193-55212 | Msa1419910:CDS | 35.0% | |
| !! | GCTTTGGAGAAAATTAGATC+CGG | + | tig0024732:55241-55260 | Msa1419910:CDS | 35.0% |
| AGGTACAACATTTATGTCAC+CGG | - | tig0024732:55263-55282 | None:intergenic | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | + | tig0024732:55272-55291 | Msa1419910:CDS | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | + | tig0024732:55465-55484 | Msa1419910:intron | 35.0% | |
| ! | TCCGACAACAAAGATTTTAC+CGG | + | tig0024732:55518-55537 | Msa1419910:intron | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | - | tig0024732:55522-55541 | None:intergenic | 35.0% |
| ! | ACATGTCTTTTTCTATCCTC+CGG | - | tig0024732:55540-55559 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | - | tig0024732:55715-55734 | None:intergenic | 35.0% |
| AATTCAGGACTATATGCTGT+AGG | + | tig0024732:55759-55778 | Msa1419910:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | + | tig0024732:55760-55779 | Msa1419910:CDS | 35.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | + | tig0024732:54375-54394 | Msa1419910:CDS | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | + | tig0024732:54376-54395 | Msa1419910:CDS | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | + | tig0024732:54423-54442 | Msa1419910:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | - | tig0024732:54459-54478 | None:intergenic | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | - | tig0024732:54602-54621 | None:intergenic | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | + | tig0024732:54626-54645 | Msa1419910:CDS | 40.0% | |
| !! | ATGATGAAACCAGTGGATTG+TGG | + | tig0024732:54633-54652 | Msa1419910:CDS | 40.0% |
| GTTGTTGGATGTGGAAATTC+TGG | + | tig0024732:54827-54846 | Msa1419910:CDS | 40.0% | |
| ! | TGGATGTGGAAATTCTGGAA+TGG | + | tig0024732:54832-54851 | Msa1419910:CDS | 40.0% |
| TCATCATGCTTTACCTTCCA+TGG | + | tig0024732:54877-54896 | Msa1419910:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | + | tig0024732:55071-55090 | Msa1419910:CDS | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | + | tig0024732:55083-55102 | Msa1419910:CDS | 40.0% | |
| !! | ATGGTTCATTTTGGGTGACA+TGG | + | tig0024732:55135-55154 | Msa1419910:CDS | 40.0% |
| TGGTATCAAAAGGCCTTCAA+TGG | + | tig0024732:55165-55184 | Msa1419910:CDS | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | + | tig0024732:55166-55185 | Msa1419910:CDS | 40.0% | |
| AACTTCAAAGGACCCATTGA+AGG | - | tig0024732:55181-55200 | None:intergenic | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | - | tig0024732:55226-55245 | None:intergenic | 40.0% |
| GGTGACATAAATGTTGTACC+TGG | + | tig0024732:55262-55281 | Msa1419910:CDS | 40.0% | |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | + | tig0024732:55307-55326 | Msa1419910:CDS | 40.0% |
| TATTCACCTGAAGCCAAGAA+GGG | - | tig0024732:55387-55406 | None:intergenic | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | - | tig0024732:55388-55407 | None:intergenic | 40.0% | |
| CAACTAAGATTTAGCCAGAG+CGG | - | tig0024732:55464-55483 | None:intergenic | 40.0% | |
| ! | GACAACAAAGATTTTACCGG+AGG | + | tig0024732:55521-55540 | Msa1419910:intron | 40.0% |
| CATGTGGAAATGGCATCTTT+GGG | - | tig0024732:55728-55747 | None:intergenic | 40.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | + | tig0024732:54375-54394 | Msa1419910:CDS | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | + | tig0024732:54376-54395 | Msa1419910:CDS | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | + | tig0024732:54423-54442 | Msa1419910:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | - | tig0024732:54459-54478 | None:intergenic | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | - | tig0024732:54602-54621 | None:intergenic | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | + | tig0024732:54626-54645 | Msa1419910:CDS | 40.0% | |
| !! | ATGATGAAACCAGTGGATTG+TGG | + | tig0024732:54633-54652 | Msa1419910:CDS | 40.0% |
| GTTGTTGGATGTGGAAATTC+TGG | + | tig0024732:54827-54846 | Msa1419910:CDS | 40.0% | |
| ! | TGGATGTGGAAATTCTGGAA+TGG | + | tig0024732:54832-54851 | Msa1419910:CDS | 40.0% |
| TCATCATGCTTTACCTTCCA+TGG | + | tig0024732:54877-54896 | Msa1419910:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | + | tig0024732:55071-55090 | Msa1419910:CDS | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | + | tig0024732:55083-55102 | Msa1419910:CDS | 40.0% | |
| !! | ATGGTTCATTTTGGGTGACA+TGG | + | tig0024732:55135-55154 | Msa1419910:CDS | 40.0% |
| TGGTATCAAAAGGCCTTCAA+TGG | + | tig0024732:55165-55184 | Msa1419910:CDS | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | + | tig0024732:55166-55185 | Msa1419910:CDS | 40.0% | |
| AACTTCAAAGGACCCATTGA+AGG | - | tig0024732:55181-55200 | None:intergenic | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | - | tig0024732:55226-55245 | None:intergenic | 40.0% |
| GGTGACATAAATGTTGTACC+TGG | + | tig0024732:55262-55281 | Msa1419910:CDS | 40.0% | |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | + | tig0024732:55307-55326 | Msa1419910:CDS | 40.0% |
| TATTCACCTGAAGCCAAGAA+GGG | - | tig0024732:55387-55406 | None:intergenic | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | - | tig0024732:55388-55407 | None:intergenic | 40.0% | |
| CAACTAAGATTTAGCCAGAG+CGG | - | tig0024732:55464-55483 | None:intergenic | 40.0% | |
| ! | GACAACAAAGATTTTACCGG+AGG | + | tig0024732:55521-55540 | Msa1419910:intron | 40.0% |
| CATGTGGAAATGGCATCTTT+GGG | - | tig0024732:55728-55747 | None:intergenic | 40.0% | |
| GTCCATTGACCCAAATGCAA+CGG | - | tig0024732:54316-54335 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | + | tig0024732:54326-54345 | Msa1419910:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | + | tig0024732:54374-54393 | Msa1419910:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | - | tig0024732:54404-54423 | None:intergenic | 45.0% | |
| AGCTCTTTCGAGAACAACGA+AGG | - | tig0024732:54405-54424 | None:intergenic | 45.0% | |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | - | tig0024732:54506-54525 | None:intergenic | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | - | tig0024732:54511-54530 | None:intergenic | 45.0% |
| TCAGGGAAATCTTCAGGCAT+TGG | - | tig0024732:54515-54534 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | - | tig0024732:54521-54540 | None:intergenic | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | - | tig0024732:54601-54620 | None:intergenic | 45.0% | |
| !! | ATGAAACCAGTGGATTGTGG+AGG | + | tig0024732:54636-54655 | Msa1419910:CDS | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | + | tig0024732:54637-54656 | Msa1419910:CDS | 45.0% |
| ! | AACACACTCAGCATTTTCGC+CGG | - | tig0024732:54711-54730 | None:intergenic | 45.0% |
| TTCCATGGTTGTTCGTAGCT+CGG | + | tig0024732:54892-54911 | Msa1419910:CDS | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | + | tig0024732:55090-55109 | Msa1419910:CDS | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | - | tig0024732:55100-55119 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | + | tig0024732:55204-55223 | Msa1419910:CDS | 45.0% | |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | + | tig0024732:55210-55229 | Msa1419910:CDS | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | + | tig0024732:55217-55236 | Msa1419910:CDS | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | + | tig0024732:55225-55244 | Msa1419910:CDS | 45.0% |
| GATGCAGTTGTTCTTGCTAC+CGG | + | tig0024732:55346-55365 | Msa1419910:CDS | 45.0% | |
| AGTTGACCTAGATCCTCTTC+TGG | + | tig0024732:55438-55457 | Msa1419910:intron | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | - | tig0024732:55729-55748 | None:intergenic | 45.0% | |
| ! | CCAAAGATGCCATTTCCACA+TGG | + | tig0024732:55726-55745 | Msa1419910:CDS | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | + | tig0024732:55730-55749 | Msa1419910:CDS | 45.0% |
| CCATTTCCACATGGTTGGAA+GGG | + | tig0024732:55735-55754 | Msa1419910:CDS | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | - | tig0024732:55744-55763 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | + | tig0024732:55744-55763 | Msa1419910:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | + | tig0024732:55775-55794 | Msa1419910:CDS | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | + | tig0024732:55783-55802 | Msa1419910:CDS | 45.0% | |
| GTCCATTGACCCAAATGCAA+CGG | - | tig0024732:54316-54335 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | + | tig0024732:54326-54345 | Msa1419910:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | + | tig0024732:54374-54393 | Msa1419910:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | - | tig0024732:54404-54423 | None:intergenic | 45.0% | |
| AGCTCTTTCGAGAACAACGA+AGG | - | tig0024732:54405-54424 | None:intergenic | 45.0% | |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | - | tig0024732:54506-54525 | None:intergenic | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | - | tig0024732:54511-54530 | None:intergenic | 45.0% |
| TCAGGGAAATCTTCAGGCAT+TGG | - | tig0024732:54515-54534 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | - | tig0024732:54521-54540 | None:intergenic | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | - | tig0024732:54601-54620 | None:intergenic | 45.0% | |
| !! | ATGAAACCAGTGGATTGTGG+AGG | + | tig0024732:54636-54655 | Msa1419910:CDS | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | + | tig0024732:54637-54656 | Msa1419910:CDS | 45.0% |
| ! | AACACACTCAGCATTTTCGC+CGG | - | tig0024732:54711-54730 | None:intergenic | 45.0% |
| TTCCATGGTTGTTCGTAGCT+CGG | + | tig0024732:54892-54911 | Msa1419910:CDS | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | + | tig0024732:55090-55109 | Msa1419910:CDS | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | - | tig0024732:55100-55119 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | + | tig0024732:55204-55223 | Msa1419910:CDS | 45.0% | |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | + | tig0024732:55210-55229 | Msa1419910:CDS | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | + | tig0024732:55217-55236 | Msa1419910:CDS | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | + | tig0024732:55225-55244 | Msa1419910:CDS | 45.0% |
| GATGCAGTTGTTCTTGCTAC+CGG | + | tig0024732:55346-55365 | Msa1419910:CDS | 45.0% | |
| AGTTGACCTAGATCCTCTTC+TGG | + | tig0024732:55438-55457 | Msa1419910:intron | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | - | tig0024732:55729-55748 | None:intergenic | 45.0% | |
| ! | CCAAAGATGCCATTTCCACA+TGG | + | tig0024732:55726-55745 | Msa1419910:CDS | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | + | tig0024732:55730-55749 | Msa1419910:CDS | 45.0% |
| CCATTTCCACATGGTTGGAA+GGG | + | tig0024732:55735-55754 | Msa1419910:CDS | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | - | tig0024732:55744-55763 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | + | tig0024732:55744-55763 | Msa1419910:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | + | tig0024732:55775-55794 | Msa1419910:CDS | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | + | tig0024732:55783-55802 | Msa1419910:CDS | 45.0% | |
| AACGGCGTGAGAGAAAGTCT+TGG | - | tig0024732:54298-54317 | None:intergenic | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | + | tig0024732:54303-54322 | Msa1419910:CDS | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | + | tig0024732:54304-54323 | Msa1419910:CDS | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | + | tig0024732:54341-54360 | Msa1419910:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | + | tig0024732:54352-54371 | Msa1419910:CDS | 50.0% |
| CTTAACCCTCCACAATCCAC+TGG | - | tig0024732:54645-54664 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTGTTGTTGCTAC+CGG | + | tig0024732:54689-54708 | Msa1419910:CDS | 50.0% |
| GAGCTACGAACAACCATGGA+AGG | - | tig0024732:54893-54912 | None:intergenic | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | - | tig0024732:54897-54916 | None:intergenic | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | + | tig0024732:55378-55397 | Msa1419910:CDS | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | + | tig0024732:55734-55753 | Msa1419910:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | - | tig0024732:55738-55757 | None:intergenic | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | + | tig0024732:55774-55793 | Msa1419910:CDS | 50.0% | |
| GCAACGTCTATGACAAGCAG+TGG | - | tig0024732:55889-55908 | None:intergenic | 50.0% | |
| AACGGCGTGAGAGAAAGTCT+TGG | - | tig0024732:54298-54317 | None:intergenic | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | + | tig0024732:54303-54322 | Msa1419910:CDS | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | + | tig0024732:54304-54323 | Msa1419910:CDS | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | + | tig0024732:54341-54360 | Msa1419910:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | + | tig0024732:54352-54371 | Msa1419910:CDS | 50.0% |
| CTTAACCCTCCACAATCCAC+TGG | - | tig0024732:54645-54664 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTGTTGTTGCTAC+CGG | + | tig0024732:54689-54708 | Msa1419910:CDS | 50.0% |
| GAGCTACGAACAACCATGGA+AGG | - | tig0024732:54893-54912 | None:intergenic | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | - | tig0024732:54897-54916 | None:intergenic | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | + | tig0024732:55378-55397 | Msa1419910:CDS | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | + | tig0024732:55734-55753 | Msa1419910:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | - | tig0024732:55738-55757 | None:intergenic | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | + | tig0024732:55774-55793 | Msa1419910:CDS | 50.0% | |
| GCAACGTCTATGACAAGCAG+TGG | - | tig0024732:55889-55908 | None:intergenic | 50.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | + | tig0024732:54311-54330 | Msa1419910:CDS | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | + | tig0024732:54332-54351 | Msa1419910:CDS | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | - | tig0024732:54338-54357 | None:intergenic | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | - | tig0024732:55368-55387 | None:intergenic | 55.0% | |
| ACCGCAGCAATGTCCCTTCT+TGG | + | tig0024732:55371-55390 | Msa1419910:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | - | tig0024732:55375-55394 | None:intergenic | 55.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | + | tig0024732:54311-54330 | Msa1419910:CDS | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | + | tig0024732:54332-54351 | Msa1419910:CDS | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | - | tig0024732:54338-54357 | None:intergenic | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | - | tig0024732:55368-55387 | None:intergenic | 55.0% | |
| ACCGCAGCAATGTCCCTTCT+TGG | + | tig0024732:55371-55390 | Msa1419910:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | - | tig0024732:55375-55394 | None:intergenic | 55.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | - | tig0024732:54359-54378 | None:intergenic | 60.0% | |
| GAGCGGCCAGAAGAGGATCT+AGG | - | tig0024732:55447-55466 | None:intergenic | 60.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | + | tig0024732:55447-55466 | Msa1419910:intron | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | - | tig0024732:55454-55473 | None:intergenic | 60.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | - | tig0024732:54359-54378 | None:intergenic | 60.0% | |
| GAGCGGCCAGAAGAGGATCT+AGG | - | tig0024732:55447-55466 | None:intergenic | 60.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | + | tig0024732:55447-55466 | Msa1419910:intron | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | - | tig0024732:55454-55473 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024732 | gene | 54266 | 55923 | 54266 | ID=Msa1419910;Name=Msa1419910 |
| tig0024732 | mRNA | 54266 | 55923 | 54266 | ID=Msa1419910-mRNA-1;Parent=Msa1419910;Name=Msa1419910-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0|1|1|1|3|0|416 |
| tig0024732 | exon | 54266 | 54913 | 54266 | ID=Msa1419910-mRNA-1:exon:1138;Parent=Msa1419910-mRNA-1 |
| tig0024732 | exon | 55025 | 55399 | 55025 | ID=Msa1419910-mRNA-1:exon:1139;Parent=Msa1419910-mRNA-1 |
| tig0024732 | exon | 55696 | 55923 | 55696 | ID=Msa1419910-mRNA-1:exon:1140;Parent=Msa1419910-mRNA-1 |
| tig0024732 | CDS | 54266 | 54913 | 54266 | ID=Msa1419910-mRNA-1:cds;Parent=Msa1419910-mRNA-1 |
| tig0024732 | CDS | 55025 | 55399 | 55025 | ID=Msa1419910-mRNA-1:cds;Parent=Msa1419910-mRNA-1 |
| tig0024732 | CDS | 55696 | 55923 | 55696 | ID=Msa1419910-mRNA-1:cds;Parent=Msa1419910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
