Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123250 | XP_003625456.1 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123250 | sp|Q9SVU0|YUC8_ARATH | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123250 | G7KZI9 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006080 | Msa1123250 | 0.803937 | 2.746463e-49 | -8.615850e-47 |
| Msa0010150 | Msa1123250 | 0.806130 | 9.553601e-50 | -8.615850e-47 |
| Msa0013270 | Msa1123250 | 0.802323 | 5.925141e-49 | -8.615850e-47 |
| Msa0014590 | Msa1123250 | 0.802872 | 4.565101e-49 | -8.615850e-47 |
| Msa0017710 | Msa1123250 | 0.803983 | 2.687209e-49 | -8.615850e-47 |
| Msa0024650 | Msa1123250 | 0.811988 | 5.315547e-51 | -8.615850e-47 |
| Msa0025570 | Msa1123250 | 0.801937 | 7.113962e-49 | -8.615850e-47 |
| Msa0045810 | Msa1123250 | 0.815196 | 1.046449e-51 | -8.615850e-47 |
| Msa0046200 | Msa1123250 | 0.801236 | 9.902691e-49 | -8.615850e-47 |
| Msa0063540 | Msa1123250 | 0.812327 | 4.483954e-51 | -8.615850e-47 |
| Msa0073110 | Msa1123250 | 0.818767 | 1.650387e-52 | -8.615850e-47 |
| Msa0092220 | Msa1123250 | 0.803151 | 3.997330e-49 | -8.615850e-47 |
| Msa0606600 | Msa1123250 | 0.828523 | 8.572828e-55 | -8.615850e-47 |
| Msa0643190 | Msa1123250 | 0.815419 | 9.334018e-52 | -8.615850e-47 |
| Msa0647300 | Msa1123250 | 0.829917 | 3.935850e-55 | -8.615850e-47 |
| Msa0686830 | Msa1123250 | 0.832494 | 9.155405e-56 | -8.615850e-47 |
| Msa0699170 | Msa1123250 | 0.801106 | 1.052879e-48 | -8.615850e-47 |
| Msa0732970 | Msa1123250 | 0.800325 | 1.519452e-48 | -8.615850e-47 |
| Msa0742200 | Msa1123250 | 0.813865 | 2.061261e-51 | -8.615850e-47 |
| Msa0751960 | Msa1123250 | 0.819591 | 1.071609e-52 | -8.615850e-47 |
| Msa0773960 | Msa1123250 | 0.807798 | 4.239351e-50 | -8.615850e-47 |
| Msa0806930 | Msa1123250 | 0.814095 | 1.834089e-51 | -8.615850e-47 |
| Msa0814160 | Msa1123250 | 0.825756 | 3.940084e-54 | -8.615850e-47 |
| Msa0822410 | Msa1123250 | 0.801817 | 7.526834e-49 | -8.615850e-47 |
| Msa0823380 | Msa1123250 | 0.811039 | 8.545623e-51 | -8.615850e-47 |
| Msa0831890 | Msa1123250 | 0.807331 | 5.324687e-50 | -8.615850e-47 |
| Msa0140270 | Msa1123250 | 0.800135 | 1.660766e-48 | -8.615850e-47 |
| Msa0142560 | Msa1123250 | 0.807350 | 5.277049e-50 | -8.615850e-47 |
| Msa0150920 | Msa1123250 | 0.811776 | 5.911695e-51 | -8.615850e-47 |
| Msa0190670 | Msa1123250 | 0.806721 | 7.168695e-50 | -8.615850e-47 |
| Msa0190890 | Msa1123250 | 0.814388 | 1.580178e-51 | -8.615850e-47 |
| Msa0195580 | Msa1123250 | 0.810390 | 1.180348e-50 | -8.615850e-47 |
| Msa0233210 | Msa1123250 | 0.822391 | 2.428546e-53 | -8.615850e-47 |
| Msa0366510 | Msa1123250 | 0.812622 | 3.864730e-51 | -8.615850e-47 |
| Msa0374040 | Msa1123250 | 0.819833 | 9.434950e-53 | -8.615850e-47 |
| Msa0374470 | Msa1123250 | 0.810881 | 9.246311e-51 | -8.615850e-47 |
| Msa0374600 | Msa1123250 | 0.809037 | 2.306360e-50 | -8.615850e-47 |
| Msa0375860 | Msa1123250 | 0.809884 | 1.517269e-50 | -8.615850e-47 |
| Msa0379480 | Msa1123250 | 0.801864 | 7.362676e-49 | -8.615850e-47 |
| Msa0380680 | Msa1123250 | 0.805520 | 1.283118e-49 | -8.615850e-47 |
| Msa0386910 | Msa1123250 | 0.812571 | 3.965160e-51 | -8.615850e-47 |
| Msa0396860 | Msa1123250 | 0.804537 | 2.060123e-49 | -8.615850e-47 |
| Msa0423200 | Msa1123250 | 0.806161 | 9.407272e-50 | -8.615850e-47 |
| Msa0423220 | Msa1123250 | 0.812788 | 3.554438e-51 | -8.615850e-47 |
| Msa0424540 | Msa1123250 | 0.804632 | 1.967745e-49 | -8.615850e-47 |
| Msa0452770 | Msa1123250 | 0.815530 | 8.820286e-52 | -8.615850e-47 |
| Msa0456450 | Msa1123250 | -0.800367 | 1.489870e-48 | -8.615850e-47 |
| Msa0457070 | Msa1123250 | -0.803307 | 3.711520e-49 | -8.615850e-47 |
| Msa0464310 | Msa1123250 | 0.816193 | 6.274707e-52 | -8.615850e-47 |
| Msa0470420 | Msa1123250 | 0.809672 | 1.685124e-50 | -8.615850e-47 |
| Msa0471390 | Msa1123250 | 0.810335 | 1.213392e-50 | -8.615850e-47 |
| Msa0472390 | Msa1123250 | 0.808657 | 2.780618e-50 | -8.615850e-47 |
| Msa0996990 | Msa1123250 | 0.808537 | 2.950334e-50 | -8.615850e-47 |
| Msa1002820 | Msa1123250 | 0.836785 | 7.633016e-57 | -8.615850e-47 |
| Msa1006170 | Msa1123250 | 0.812011 | 5.253511e-51 | -8.615850e-47 |
| Msa1022490 | Msa1123250 | 0.801728 | 7.852117e-49 | -8.615850e-47 |
| Msa1022510 | Msa1123250 | 0.810030 | 1.411239e-50 | -8.615850e-47 |
| Msa1030320 | Msa1123250 | 0.803612 | 3.208568e-49 | -8.615850e-47 |
| Msa1041910 | Msa1123250 | 0.807887 | 4.057445e-50 | -8.615850e-47 |
| Msa1061670 | Msa1123250 | 0.816845 | 4.481364e-52 | -8.615850e-47 |
| Msa1068730 | Msa1123250 | 0.802450 | 5.578296e-49 | -8.615850e-47 |
| Msa1069350 | Msa1123250 | 0.807919 | 3.994924e-50 | -8.615850e-47 |
| Msa1078090 | Msa1123250 | 0.968536 | 8.108380e-129 | -8.615850e-47 |
| Msa1079820 | Msa1123250 | 0.812124 | 4.965389e-51 | -8.615850e-47 |
| Msa1087370 | Msa1123250 | 0.801860 | 7.377748e-49 | -8.615850e-47 |
| Msa1106680 | Msa1123250 | 0.828477 | 8.799496e-55 | -8.615850e-47 |
| Msa1106960 | Msa1123250 | 0.818145 | 2.283504e-52 | -8.615850e-47 |
| Msa0266140 | Msa1123250 | -0.806007 | 1.013672e-49 | -8.615850e-47 |
| Msa0274250 | Msa1123250 | 0.804722 | 1.885030e-49 | -8.615850e-47 |
| Msa0279810 | Msa1123250 | 0.804544 | 2.053136e-49 | -8.615850e-47 |
| Msa0281190 | Msa1123250 | 0.834822 | 2.399940e-56 | -8.615850e-47 |
| Msa0299030 | Msa1123250 | 0.816052 | 6.746550e-52 | -8.615850e-47 |
| Msa0303650 | Msa1123250 | 0.803968 | 2.705700e-49 | -8.615850e-47 |
| Msa0304060 | Msa1123250 | -0.806111 | 9.640872e-50 | -8.615850e-47 |
| Msa0307040 | Msa1123250 | 0.827173 | 1.810667e-54 | -8.615850e-47 |
| Msa0348370 | Msa1123250 | 0.801524 | 8.645918e-49 | -8.615850e-47 |
| Msa0358470 | Msa1123250 | 0.827179 | 1.805072e-54 | -8.615850e-47 |
| Msa1108560 | Msa1123250 | 0.801700 | 7.954860e-49 | -8.615850e-47 |
| Msa1123250 | Msa1146980 | 0.805127 | 1.551115e-49 | -8.615850e-47 |
| Msa1123250 | Msa1147010 | 0.823708 | 1.197853e-53 | -8.615850e-47 |
| Msa1123250 | Msa1157210 | 0.811608 | 6.430730e-51 | -8.615850e-47 |
| Msa1123250 | Msa1167960 | 0.812775 | 3.577844e-51 | -8.615850e-47 |
| Msa1123250 | Msa1181090 | 0.815743 | 7.906997e-52 | -8.615850e-47 |
| Msa1123250 | Msa1186340 | 0.806258 | 8.974901e-50 | -8.615850e-47 |
| Msa1123250 | Msa1223960 | 0.803672 | 3.117056e-49 | -8.615850e-47 |
| Msa1123250 | Msa1223990 | 0.803345 | 3.643860e-49 | -8.615850e-47 |
| Msa1123250 | Msa1240710 | 0.807869 | 4.094060e-50 | -8.615850e-47 |
| Msa1123250 | Msa1263110 | 0.812659 | 3.793165e-51 | -8.615850e-47 |
| Msa1123250 | Msa1279750 | 0.801453 | 8.940764e-49 | -8.615850e-47 |
| Msa1123250 | Msa1283600 | 0.802080 | 6.646780e-49 | -8.615850e-47 |
| Msa1123250 | Msa1322500 | 0.806121 | 9.592502e-50 | -8.615850e-47 |
| Msa1123250 | Msa1342360 | -0.800142 | 1.655544e-48 | -8.615850e-47 |
| Msa1123250 | Msa1355340 | 0.815476 | 9.068198e-52 | -8.615850e-47 |
| Msa1123250 | Msa1357840 | 0.809988 | 1.441220e-50 | -8.615850e-47 |
| Msa1123250 | Msa1366480 | 0.804118 | 2.519001e-49 | -8.615850e-47 |
| Msa1123250 | Msa1368420 | 0.801123 | 1.044679e-48 | -8.615850e-47 |
| Msa1123250 | Msa1383220 | 0.805130 | 1.548510e-49 | -8.615850e-47 |
| Msa1123250 | Msa1419910 | 0.967387 | 3.300532e-127 | -8.615850e-47 |
| Msa1123250 | Msa1455360 | 0.835347 | 1.769430e-56 | -8.615850e-47 |
| Msa1123250 | Msa1462780 | 0.805413 | 1.351092e-49 | -8.615850e-47 |
| Msa0490060 | Msa1123250 | 0.808453 | 3.074722e-50 | -8.615850e-47 |
| Msa0490100 | Msa1123250 | 0.811917 | 5.506765e-51 | -8.615850e-47 |
| Msa0501080 | Msa1123250 | 0.806759 | 7.039241e-50 | -8.615850e-47 |
| Msa0515130 | Msa1123250 | 0.804652 | 1.949141e-49 | -8.615850e-47 |
| Msa0523720 | Msa1123250 | 0.822933 | 1.817224e-53 | -8.615850e-47 |
| Msa0535570 | Msa1123250 | 0.812414 | 4.290057e-51 | -8.615850e-47 |
| Msa0854840 | Msa1123250 | 0.809789 | 1.590408e-50 | -8.615850e-47 |
| Msa0861730 | Msa1123250 | 0.823827 | 1.123234e-53 | -8.615850e-47 |
| Msa0880910 | Msa1123250 | 0.804807 | 1.808811e-49 | -8.615850e-47 |
| Msa0893840 | Msa1123250 | 0.801319 | 9.523628e-49 | -8.615850e-47 |
| Msa0970270 | Msa1123250 | 0.809388 | 1.939255e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123250 | MtrunA17_Chr7g0262591 | 98.798 | 416 | 5 | 0 | 1 | 416 | 1 | 416 | 0.0 | 852 |
| Msa1123250 | MtrunA17_Chr1g0182991 | 78.436 | 422 | 84 | 4 | 1 | 416 | 1 | 421 | 0.0 | 687 |
| Msa1123250 | MtrunA17_Chr7g0262471 | 97.231 | 325 | 9 | 0 | 92 | 416 | 213 | 537 | 0.0 | 657 |
| Msa1123250 | MtrunA17_Chr1g0169111 | 72.642 | 424 | 107 | 2 | 1 | 416 | 79 | 501 | 0.0 | 640 |
| Msa1123250 | MtrunA17_Chr1g0148801 | 58.268 | 381 | 156 | 2 | 17 | 395 | 9 | 388 | 4.02e-176 | 497 |
| Msa1123250 | MtrunA17_Chr1g0147221 | 58.974 | 390 | 153 | 3 | 17 | 400 | 35 | 423 | 9.71e-174 | 492 |
| Msa1123250 | MtrunA17_Chr3g0139441 | 59.536 | 388 | 149 | 3 | 19 | 399 | 34 | 420 | 7.24e-171 | 484 |
| Msa1123250 | MtrunA17_Chr6g0485621 | 56.391 | 399 | 160 | 5 | 9 | 395 | 16 | 412 | 1.38e-167 | 476 |
| Msa1123250 | MtrunA17_Chr7g0268621 | 45.953 | 383 | 195 | 4 | 25 | 400 | 7 | 384 | 5.89e-120 | 353 |
| Msa1123250 | MtrunA17_Chr7g0268611 | 42.480 | 379 | 206 | 4 | 25 | 396 | 9 | 382 | 2.86e-114 | 339 |
| Msa1123250 | MtrunA17_Chr5g0412881 | 45.093 | 377 | 195 | 4 | 25 | 394 | 7 | 378 | 8.39e-114 | 338 |
| Msa1123250 | MtrunA17_Chr8g0350371 | 45.067 | 375 | 194 | 3 | 25 | 392 | 7 | 376 | 1.51e-112 | 335 |
| Msa1123250 | MtrunA17_Chr3g0125711 | 43.850 | 374 | 196 | 4 | 25 | 390 | 8 | 375 | 2.27e-112 | 335 |
| Msa1123250 | MtrunA17_Chr3g0125701 | 43.164 | 373 | 200 | 3 | 25 | 390 | 8 | 375 | 4.49e-111 | 331 |
| Msa1123250 | MtrunA17_Chr3g0125691 | 42.895 | 373 | 201 | 3 | 25 | 390 | 8 | 375 | 1.93e-109 | 327 |
| Msa1123250 | MtrunA17_Chr4g0025641 | 48.241 | 199 | 97 | 2 | 25 | 217 | 17 | 215 | 5.90e-61 | 197 |
| Msa1123250 | MtrunA17_Chr4g0025651 | 41.667 | 156 | 89 | 2 | 236 | 390 | 15 | 169 | 3.62e-36 | 131 |
| Msa1123250 | MtrunA17_Chr3g0129991 | 40.336 | 119 | 65 | 1 | 82 | 194 | 1 | 119 | 4.28e-24 | 96.3 |
| Msa1123250 | MtrunA17_Chr3g0091441 | 23.140 | 242 | 139 | 6 | 26 | 228 | 15 | 248 | 2.51e-11 | 65.1 |
| Msa1123250 | MtrunA17_Chr7g0250581 | 86.667 | 30 | 4 | 0 | 84 | 113 | 1 | 30 | 4.87e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1123250 | AT4G28720.1 | 75.059 | 425 | 95 | 4 | 1 | 415 | 1 | 424 | 0.0 | 672 |
| Msa1123250 | AT5G43890.1 | 72.813 | 423 | 105 | 4 | 1 | 414 | 1 | 422 | 0.0 | 644 |
| Msa1123250 | AT1G04180.1 | 72.381 | 420 | 109 | 4 | 1 | 414 | 1 | 419 | 0.0 | 637 |
| Msa1123250 | AT1G04610.1 | 68.019 | 419 | 124 | 2 | 7 | 416 | 20 | 437 | 0.0 | 603 |
| Msa1123250 | AT2G33230.1 | 66.667 | 423 | 130 | 3 | 3 | 416 | 11 | 431 | 0.0 | 569 |
| Msa1123250 | AT5G25620.1 | 60.199 | 402 | 151 | 5 | 9 | 402 | 16 | 416 | 5.61e-178 | 503 |
| Msa1123250 | AT5G25620.2 | 60.150 | 399 | 150 | 5 | 9 | 399 | 16 | 413 | 6.25e-177 | 501 |
| Msa1123250 | AT5G11320.1 | 58.438 | 397 | 159 | 2 | 19 | 415 | 12 | 402 | 4.97e-173 | 490 |
| Msa1123250 | AT4G32540.1 | 56.589 | 387 | 165 | 3 | 15 | 399 | 12 | 397 | 1.37e-167 | 476 |
| Msa1123250 | AT4G32540.2 | 56.041 | 389 | 166 | 4 | 15 | 399 | 12 | 399 | 7.72e-166 | 472 |
| Msa1123250 | AT4G13260.1 | 57.218 | 381 | 155 | 3 | 17 | 390 | 21 | 400 | 3.57e-162 | 462 |
| Msa1123250 | AT5G11320.2 | 59.752 | 323 | 129 | 1 | 19 | 341 | 12 | 333 | 1.68e-144 | 416 |
| Msa1123250 | AT4G13260.2 | 56.897 | 290 | 119 | 1 | 17 | 300 | 21 | 310 | 4.49e-125 | 364 |
| Msa1123250 | AT1G48910.1 | 45.308 | 373 | 192 | 4 | 25 | 390 | 6 | 373 | 4.06e-119 | 352 |
| Msa1123250 | AT1G21430.1 | 47.467 | 375 | 180 | 7 | 25 | 390 | 10 | 376 | 4.90e-117 | 347 |
| Msa1123250 | AT4G13260.3 | 56.207 | 290 | 119 | 3 | 108 | 390 | 9 | 297 | 4.14e-110 | 326 |
| Msa1123250 | AT1G65860.1 | 26.201 | 229 | 129 | 7 | 26 | 222 | 15 | 235 | 5.90e-15 | 77.0 |
| Msa1123250 | AT5G07800.1 | 25.346 | 217 | 122 | 5 | 26 | 202 | 18 | 234 | 8.83e-13 | 70.1 |
| Msa1123250 | AT5G45180.1 | 25.501 | 349 | 197 | 12 | 25 | 332 | 14 | 340 | 5.91e-12 | 67.8 |
Find 94 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGAAAGTCCTTCAATTTC+AGG | 0.167964 | 7_3:-74081400 | None:intergenic |
| TTCTCTCACGCCGTTGCATT+TGG | 0.196198 | 7_3:+74080969 | Msa1123250:CDS |
| GTTAAAATTGCACAAGATAT+TGG | 0.210104 | 7_3:+74082457 | Msa1123250:CDS |
| TGTTTCTTTGAAGGGTATTC+AGG | 0.234534 | 7_3:-74081196 | None:intergenic |
| CCATGTGGAAATGGCATCTT+TGG | 0.241543 | 7_3:-74082361 | None:intergenic |
| TTCACAAAGAGAGGGCTTTC+TGG | 0.253444 | 7_3:+74082418 | Msa1123250:CDS |
| CAATGTCCCTTCTTGGCTTC+AGG | 0.262510 | 7_3:+74082044 | Msa1123250:CDS |
| CACAAGATATTGGAAAAGTT+TGG | 0.264533 | 7_3:+74082467 | Msa1123250:CDS |
| GTTGTTGGATGTGGAAATTC+TGG | 0.276886 | 7_3:+74081493 | Msa1123250:CDS |
| ACCGCAGCAATGTCCCTTCT+TGG | 0.278978 | 7_3:+74082037 | Msa1123250:CDS |
| GTGCTACCTAGAGAAATATT+TGG | 0.304479 | 7_3:+74081697 | Msa1123250:CDS |
| GGTAGTTGACAGAATTGTTT+TGG | 0.312145 | 7_3:-74081148 | None:intergenic |
| TCTCTCACGCCGTTGCATTT+GGG | 0.312281 | 7_3:+74080970 | Msa1123250:CDS |
| AGAAGGAAAGACACCGGTTT+TGG | 0.315038 | 7_3:+74081876 | Msa1123250:CDS |
| GGTGAAGTTGAGCTTGTTAA+TGG | 0.336155 | 7_3:+74081973 | Msa1123250:CDS |
| CGCCGTTGCATTTGGGTCAA+TGG | 0.349348 | 7_3:+74080977 | Msa1123250:CDS |
| CCCTTCCAACCATGTGGAAA+TGG | 0.354454 | 7_3:-74082370 | None:intergenic |
| GAACACACTCGTTGAATTGC+GGG | 0.355699 | 7_3:-74081264 | None:intergenic |
| CATGGTTGGAAGGGAAATTC+AGG | 0.364067 | 7_3:+74082379 | Msa1123250:CDS |
| TATGCTTGTGATTACAAGTC+AGG | 0.381966 | 7_3:+74081442 | Msa1123250:CDS |
| GGAAAGAAAGTTCTTGTTGT+TGG | 0.397099 | 7_3:+74081478 | Msa1123250:CDS |
| GGGTATTCAGGGAAATCTTC+AGG | 0.406351 | 7_3:-74081184 | None:intergenic |
| CTTATGAATTGTTTCTTTGA+AGG | 0.406911 | 7_3:-74081205 | None:intergenic |
| AGGTGGCTTGTTGTTGCTAC+TGG | 0.408473 | 7_3:+74081355 | Msa1123250:CDS |
| TCTTCAGGCATTGGAAGGTT+AGG | 0.415876 | 7_3:-74081169 | None:intergenic |
| TCATCATGCTTTACCTTCCA+TGG | 0.420618 | 7_3:+74081543 | Msa1123250:CDS |
| TGGTATCAAAAGGCCTTCAA+TGG | 0.420704 | 7_3:+74081831 | Msa1123250:CDS |
| AAAGTTCTTGTTGTTGGATG+TGG | 0.420882 | 7_3:+74081484 | Msa1123250:CDS |
| ATCATAGGTGCAGGTCCATC+TGG | 0.430455 | 7_3:+74081007 | Msa1123250:CDS |
| AGGGACATTGCTGCGGTAAC+CGG | 0.431024 | 7_3:-74082031 | None:intergenic |
| ATCAAAAGGTTTAATAATCA+TGG | 0.435107 | 7_3:+74081952 | Msa1123250:CDS |
| TTCCATGGTTGTTCGTAGCT+CGG | 0.440887 | 7_3:+74081558 | Msa1123250:CDS |
| ATGAAGTTGAGTACATTTGT+AGG | 0.449172 | 7_3:+74081335 | Msa1123250:CDS |
| AACTTCAAAGGACCCATTGA+AGG | 0.449923 | 7_3:-74081844 | None:intergenic |
| TTATGAATTGTTTCTTTGAA+GGG | 0.463097 | 7_3:-74081204 | None:intergenic |
| CTGATTGCATAGCATCACTA+TGG | 0.465618 | 7_3:+74081089 | Msa1123250:CDS |
| GTTTCTTTGAAGGGTATTCA+GGG | 0.466361 | 7_3:-74081195 | None:intergenic |
| TCAGGGAAATCTTCAGGCAT+TGG | 0.472081 | 7_3:-74081178 | None:intergenic |
| TGTTGAAGTGGTTACCACTT+TGG | 0.479523 | 7_3:+74081749 | Msa1123250:CDS |
| GATATTCCAAATATTTCTCT+AGG | 0.498261 | 7_3:-74081703 | None:intergenic |
| TCTGTGTTCTTCAACTTCAA+AGG | 0.498901 | 7_3:-74081856 | None:intergenic |
| GAAGGACTTTCTGAATTCAA+AGG | 0.499261 | 7_3:+74081409 | Msa1123250:CDS |
| GCCATTTCCACATGGTTGGA+AGG | 0.503171 | 7_3:+74082369 | Msa1123250:CDS |
| AGATGCCATTTCCACATGGT+TGG | 0.512278 | 7_3:+74082365 | Msa1123250:CDS |
| GATGCAGTTGTTCTTGCTAC+CGG | 0.513400 | 7_3:+74082012 | Msa1123250:CDS |
| AAAGCACCAATGTCCAAAAC+CGG | 0.515634 | 7_3:-74081889 | None:intergenic |
| GTCAATGGACCTGTGATCAT+AGG | 0.520464 | 7_3:+74080992 | Msa1123250:CDS |
| CTTAACCCTCCACAATCCAC+TGG | 0.522153 | 7_3:-74081308 | None:intergenic |
| CATGTGGAAATGGCATCTTT+GGG | 0.531409 | 7_3:-74082360 | None:intergenic |
| AATTCAGGACTATATGCTGT+AGG | 0.534469 | 7_3:+74082394 | Msa1123250:CDS |
| ATGCTTGTGATTACAAGTCA+GGG | 0.545079 | 7_3:+74081443 | Msa1123250:CDS |
| TGTGTTACTCCTGAAATTGA+AGG | 0.546438 | 7_3:+74081391 | Msa1123250:CDS |
| GGTATCAAAAGGCCTTCAAT+GGG | 0.549973 | 7_3:+74081832 | Msa1123250:CDS |
| AGGTACAACATTTATGTCAC+CGG | 0.553155 | 7_3:-74081926 | None:intergenic |
| CCATTTCCACATGGTTGGAA+GGG | 0.558378 | 7_3:+74082370 | Msa1123250:CDS |
| ATATTCACCTGAAGCCAAGA+AGG | 0.558667 | 7_3:-74082051 | None:intergenic |
| TGAACACACTCGTTGAATTG+CGG | 0.561991 | 7_3:-74081265 | None:intergenic |
| GGAAATCTTCAGGCATTGGA+AGG | 0.566772 | 7_3:-74081174 | None:intergenic |
| ATGTTGTACCTGGAATCAAA+AGG | 0.567602 | 7_3:+74081938 | Msa1123250:CDS |
| GGACCTGTGATCATAGGTGC+AGG | 0.569251 | 7_3:+74080998 | Msa1123250:CDS |
| TAGCGGTTATGATGTTGAAG+TGG | 0.573120 | 7_3:+74081737 | Msa1123250:CDS |
| GCTTTGGAGAAAATTAGATC+CGG | 0.578995 | 7_3:+74081907 | Msa1123250:CDS |
| GCTGTAGGGTTCACAAAGAG+AGG | 0.580060 | 7_3:+74082409 | Msa1123250:CDS |
| GCTGCCGTTGCAAGACCAGA+TGG | 0.585259 | 7_3:-74081022 | None:intergenic |
| GTGAAGTTTCAATCTGTCGT+AGG | 0.589564 | 7_3:-74081122 | None:intergenic |
| ATTCAGGACTATATGCTGTA+GGG | 0.590290 | 7_3:+74082395 | Msa1123250:CDS |
| TTGAAGTTGAAGAACACAGA+AGG | 0.590910 | 7_3:+74081859 | Msa1123250:CDS |
| CCAAAGATGCCATTTCCACA+TGG | 0.597297 | 7_3:+74082361 | Msa1123250:CDS |
| GCAGCATGTCTTAGAGAACA+AGG | 0.601445 | 7_3:+74081040 | Msa1123250:CDS |
| TGGATGTGGAAATTCTGGAA+TGG | 0.605555 | 7_3:+74081498 | Msa1123250:CDS |
| AAGTTGAGTACATTTGTAGG+TGG | 0.605781 | 7_3:+74081338 | Msa1123250:CDS |
| GGTGACATAAATGTTGTACC+TGG | 0.608839 | 7_3:+74081928 | Msa1123250:CDS |
| TATTCACCTGAAGCCAAGAA+GGG | 0.613263 | 7_3:-74082050 | None:intergenic |
| CTGTAGGGTTCACAAAGAGA+GGG | 0.613353 | 7_3:+74082410 | Msa1123250:CDS |
| ATGATGAAACCAGTGGATTG+TGG | 0.614186 | 7_3:+74081299 | Msa1123250:CDS |
| GGACCTGCACCTATGATCAC+AGG | 0.615165 | 7_3:-74081001 | None:intergenic |
| GTCCATTGACCCAAATGCAA+CGG | 0.615198 | 7_3:-74080979 | None:intergenic |
| GTGGTTACCACTTTGGATTG+TGG | 0.615333 | 7_3:+74081756 | Msa1123250:CDS |
| AGCTCTTTCGAGAACAACGA+AGG | 0.625793 | 7_3:-74081068 | None:intergenic |
| AGGTCCATCTGGTCTTGCAA+CGG | 0.627266 | 7_3:+74081018 | Msa1123250:CDS |
| GAATTTCCCTTCCAACCATG+TGG | 0.635313 | 7_3:-74082376 | None:intergenic |
| GAGCTACGAACAACCATGGA+AGG | 0.637115 | 7_3:-74081556 | None:intergenic |
| GCAACGTCTATGACAAGCAG+TGG | 0.639607 | 7_3:-74082521 | None:intergenic |
| AGCTTGTCCACAATCCAAAG+TGG | 0.643807 | 7_3:-74081763 | None:intergenic |
| TACCGAGCTACGAACAACCA+TGG | 0.644442 | 7_3:-74081560 | None:intergenic |
| CAGCATGTCTTAGAGAACAA+GGG | 0.645300 | 7_3:+74081041 | Msa1123250:CDS |
| AGCATGTCTTAGAGAACAAG+GGG | 0.647019 | 7_3:+74081042 | Msa1123250:CDS |
| GCTAAGTATGATGAAACCAG+TGG | 0.647995 | 7_3:+74081292 | Msa1123250:CDS |
| AACGGCGTGAGAGAAAGTCT+TGG | 0.654245 | 7_3:-74080961 | None:intergenic |
| GCCAAGAAGGGACATTGCTG+CGG | 0.662896 | 7_3:-74082038 | None:intergenic |
| GCTCTTTCGAGAACAACGAA+GGG | 0.679788 | 7_3:-74081067 | None:intergenic |
| ATGAAACCAGTGGATTGTGG+AGG | 0.691994 | 7_3:+74081302 | Msa1123250:CDS |
| GAACACAGAAGGAAAGACAC+CGG | 0.709214 | 7_3:+74081870 | Msa1123250:CDS |
| TGAAACCAGTGGATTGTGGA+GGG | 0.710675 | 7_3:+74081303 | Msa1123250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGTAAATTCTTTTAACTT+AGG | + | chr7_3:74081625-74081644 | Msa1123250:intron | 15.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | + | chr7_3:74082295-74082314 | Msa1123250:intron | 15.0% |
| !!! | ATAGTAAATTCTTTTAACTT+AGG | + | chr7_3:74081625-74081644 | Msa1123250:intron | 15.0% |
| !!! | ATCAAGTAACTAATTAATTT+TGG | + | chr7_3:74082295-74082314 | Msa1123250:intron | 15.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | - | chr7_3:74081207-74081226 | None:intergenic | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | + | chr7_3:74081720-74081739 | Msa1123250:CDS | 20.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | + | chr7_3:74081952-74081971 | Msa1123250:CDS | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | + | chr7_3:74082309-74082328 | Msa1123250:intron | 20.0% |
| !!! | TTATGAATTGTTTCTTTGAA+GGG | - | chr7_3:74081207-74081226 | None:intergenic | 20.0% |
| !!! | AATATCAACTTTTGAATTAG+CGG | + | chr7_3:74081720-74081739 | Msa1123250:CDS | 20.0% |
| !! | ATCAAAAGGTTTAATAATCA+TGG | + | chr7_3:74081952-74081971 | Msa1123250:CDS | 20.0% |
| !!! | TAATTTTGGTTATGTTATAC+AGG | + | chr7_3:74082309-74082328 | Msa1123250:intron | 20.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | - | chr7_3:74081208-74081227 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | - | chr7_3:74081234-74081253 | None:intergenic | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | + | chr7_3:74081644-74081663 | Msa1123250:intron | 25.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | + | chr7_3:74081645-74081664 | Msa1123250:intron | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | + | chr7_3:74081669-74081688 | Msa1123250:intron | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | - | chr7_3:74081706-74081725 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | + | chr7_3:74081793-74081812 | Msa1123250:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | + | chr7_3:74081821-74081840 | Msa1123250:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | - | chr7_3:74081949-74081968 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | + | chr7_3:74082457-74082476 | Msa1123250:CDS | 25.0% |
| !! | CTTATGAATTGTTTCTTTGA+AGG | - | chr7_3:74081208-74081227 | None:intergenic | 25.0% |
| !!! | ATTTGTTAGCATAGTTTTCA+AGG | - | chr7_3:74081234-74081253 | None:intergenic | 25.0% |
| ! | TAGGATGAAAAAAATCTAAC+TGG | + | chr7_3:74081644-74081663 | Msa1123250:intron | 25.0% |
| ! | AGGATGAAAAAAATCTAACT+GGG | + | chr7_3:74081645-74081664 | Msa1123250:intron | 25.0% |
| !!! | TGTTCTGTTTTTTTTACTAC+AGG | + | chr7_3:74081669-74081688 | Msa1123250:intron | 25.0% |
| ! | GATATTCCAAATATTTCTCT+AGG | - | chr7_3:74081706-74081725 | None:intergenic | 25.0% |
| !!! | ATTTTGACATGGTTCATTTT+GGG | + | chr7_3:74081793-74081812 | Msa1123250:CDS | 25.0% |
| ! | TGGAAAAATATGGTATCAAA+AGG | + | chr7_3:74081821-74081840 | Msa1123250:CDS | 25.0% |
| !!! | TTATTAAACCTTTTGATTCC+AGG | - | chr7_3:74081949-74081968 | None:intergenic | 25.0% |
| ! | GTTAAAATTGCACAAGATAT+TGG | + | chr7_3:74082457-74082476 | Msa1123250:CDS | 25.0% |
| ATGAAGTTGAGTACATTTGT+AGG | + | chr7_3:74081335-74081354 | Msa1123250:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | + | chr7_3:74081457-74081476 | Msa1123250:CDS | 30.0% |
| ATTAATACTGACACAGATAC+CGG | - | chr7_3:74081602-74081621 | None:intergenic | 30.0% | |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | + | chr7_3:74081782-74081801 | Msa1123250:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | + | chr7_3:74081792-74081811 | Msa1123250:CDS | 30.0% |
| TTTGGTTATGTTATACAGGA+AGG | + | chr7_3:74082313-74082332 | Msa1123250:intron | 30.0% | |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | + | chr7_3:74082334-74082353 | Msa1123250:CDS | 30.0% |
| CACAAGATATTGGAAAAGTT+TGG | + | chr7_3:74082467-74082486 | Msa1123250:CDS | 30.0% | |
| ATGAAGTTGAGTACATTTGT+AGG | + | chr7_3:74081335-74081354 | Msa1123250:CDS | 30.0% | |
| ! | AAGTCAGGGAAAAATTTTGA+AGG | + | chr7_3:74081457-74081476 | Msa1123250:CDS | 30.0% |
| ATTAATACTGACACAGATAC+CGG | - | chr7_3:74081602-74081621 | None:intergenic | 30.0% | |
| !!! | AGCTTTTGTTGATTTTGACA+TGG | + | chr7_3:74081782-74081801 | Msa1123250:CDS | 30.0% |
| !! | GATTTTGACATGGTTCATTT+TGG | + | chr7_3:74081792-74081811 | Msa1123250:CDS | 30.0% |
| TTTGGTTATGTTATACAGGA+AGG | + | chr7_3:74082313-74082332 | Msa1123250:intron | 30.0% | |
| ! | GGTGAATTTTTCTCCAAAAA+TGG | + | chr7_3:74082334-74082353 | Msa1123250:CDS | 30.0% |
| CACAAGATATTGGAAAAGTT+TGG | + | chr7_3:74082467-74082486 | Msa1123250:CDS | 30.0% | |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | - | chr7_3:74081147-74081166 | None:intergenic | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | - | chr7_3:74081151-74081170 | None:intergenic | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | - | chr7_3:74081198-74081217 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | - | chr7_3:74081199-74081218 | None:intergenic | 35.0% |
| AAGTTGAGTACATTTGTAGG+TGG | + | chr7_3:74081338-74081357 | Msa1123250:CDS | 35.0% | |
| ! | TGTGTTACTCCTGAAATTGA+AGG | + | chr7_3:74081391-74081410 | Msa1123250:CDS | 35.0% |
| TCAGAAAGTCCTTCAATTTC+AGG | - | chr7_3:74081403-74081422 | None:intergenic | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | + | chr7_3:74081409-74081428 | Msa1123250:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | + | chr7_3:74081442-74081461 | Msa1123250:CDS | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | + | chr7_3:74081443-74081462 | Msa1123250:CDS | 35.0% | |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | + | chr7_3:74081478-74081497 | Msa1123250:CDS | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | + | chr7_3:74081484-74081503 | Msa1123250:CDS | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | + | chr7_3:74081580-74081599 | Msa1123250:intron | 35.0% |
| GTGCTACCTAGAGAAATATT+TGG | + | chr7_3:74081697-74081716 | Msa1123250:CDS | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | + | chr7_3:74081811-74081830 | Msa1123250:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | - | chr7_3:74081859-74081878 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | + | chr7_3:74081859-74081878 | Msa1123250:CDS | 35.0% | |
| !! | GCTTTGGAGAAAATTAGATC+CGG | + | chr7_3:74081907-74081926 | Msa1123250:CDS | 35.0% |
| AGGTACAACATTTATGTCAC+CGG | - | chr7_3:74081929-74081948 | None:intergenic | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | + | chr7_3:74081938-74081957 | Msa1123250:CDS | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | + | chr7_3:74082131-74082150 | Msa1123250:intron | 35.0% | |
| ! | TCCGACAACAAAGATTTTAC+CGG | + | chr7_3:74082184-74082203 | Msa1123250:intron | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | - | chr7_3:74082188-74082207 | None:intergenic | 35.0% |
| ! | ACATGTCTTTTTCTATCCTC+CGG | - | chr7_3:74082206-74082225 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | - | chr7_3:74082350-74082369 | None:intergenic | 35.0% |
| AATTCAGGACTATATGCTGT+AGG | + | chr7_3:74082394-74082413 | Msa1123250:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | + | chr7_3:74082395-74082414 | Msa1123250:CDS | 35.0% | |
| !!! | GTTGACAGAATTGTTTTGGA+AGG | - | chr7_3:74081147-74081166 | None:intergenic | 35.0% |
| ! | GGTAGTTGACAGAATTGTTT+TGG | - | chr7_3:74081151-74081170 | None:intergenic | 35.0% |
| !! | GTTTCTTTGAAGGGTATTCA+GGG | - | chr7_3:74081198-74081217 | None:intergenic | 35.0% |
| !! | TGTTTCTTTGAAGGGTATTC+AGG | - | chr7_3:74081199-74081218 | None:intergenic | 35.0% |
| AAGTTGAGTACATTTGTAGG+TGG | + | chr7_3:74081338-74081357 | Msa1123250:CDS | 35.0% | |
| ! | TGTGTTACTCCTGAAATTGA+AGG | + | chr7_3:74081391-74081410 | Msa1123250:CDS | 35.0% |
| TCAGAAAGTCCTTCAATTTC+AGG | - | chr7_3:74081403-74081422 | None:intergenic | 35.0% | |
| GAAGGACTTTCTGAATTCAA+AGG | + | chr7_3:74081409-74081428 | Msa1123250:CDS | 35.0% | |
| TATGCTTGTGATTACAAGTC+AGG | + | chr7_3:74081442-74081461 | Msa1123250:CDS | 35.0% | |
| ATGCTTGTGATTACAAGTCA+GGG | + | chr7_3:74081443-74081462 | Msa1123250:CDS | 35.0% | |
| ! | GGAAAGAAAGTTCTTGTTGT+TGG | + | chr7_3:74081478-74081497 | Msa1123250:CDS | 35.0% |
| !! | AAAGTTCTTGTTGTTGGATG+TGG | + | chr7_3:74081484-74081503 | Msa1123250:CDS | 35.0% |
| !!! | GTAAGTTCTTTTTCAGTGTC+CGG | + | chr7_3:74081580-74081599 | Msa1123250:intron | 35.0% |
| GTGCTACCTAGAGAAATATT+TGG | + | chr7_3:74081697-74081716 | Msa1123250:CDS | 35.0% | |
| TTGGGTGACATGGAAAAATA+TGG | + | chr7_3:74081811-74081830 | Msa1123250:CDS | 35.0% | |
| TCTGTGTTCTTCAACTTCAA+AGG | - | chr7_3:74081859-74081878 | None:intergenic | 35.0% | |
| TTGAAGTTGAAGAACACAGA+AGG | + | chr7_3:74081859-74081878 | Msa1123250:CDS | 35.0% | |
| !! | GCTTTGGAGAAAATTAGATC+CGG | + | chr7_3:74081907-74081926 | Msa1123250:CDS | 35.0% |
| AGGTACAACATTTATGTCAC+CGG | - | chr7_3:74081929-74081948 | None:intergenic | 35.0% | |
| ATGTTGTACCTGGAATCAAA+AGG | + | chr7_3:74081938-74081957 | Msa1123250:CDS | 35.0% | |
| TCTGGCTAAATCTTAGTTGT+TGG | + | chr7_3:74082131-74082150 | Msa1123250:intron | 35.0% | |
| ! | TCCGACAACAAAGATTTTAC+CGG | + | chr7_3:74082184-74082203 | Msa1123250:intron | 35.0% |
| ! | TCCGGTAAAATCTTTGTTGT+CGG | - | chr7_3:74082188-74082207 | None:intergenic | 35.0% |
| ! | ACATGTCTTTTTCTATCCTC+CGG | - | chr7_3:74082206-74082225 | None:intergenic | 35.0% |
| ! | CATCTTTGGGTATCCATTTT+TGG | - | chr7_3:74082350-74082369 | None:intergenic | 35.0% |
| AATTCAGGACTATATGCTGT+AGG | + | chr7_3:74082394-74082413 | Msa1123250:CDS | 35.0% | |
| ATTCAGGACTATATGCTGTA+GGG | + | chr7_3:74082395-74082414 | Msa1123250:CDS | 35.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | + | chr7_3:74081041-74081060 | Msa1123250:CDS | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | + | chr7_3:74081042-74081061 | Msa1123250:CDS | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | + | chr7_3:74081089-74081108 | Msa1123250:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | - | chr7_3:74081125-74081144 | None:intergenic | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | - | chr7_3:74081268-74081287 | None:intergenic | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | + | chr7_3:74081292-74081311 | Msa1123250:CDS | 40.0% | |
| !! | ATGATGAAACCAGTGGATTG+TGG | + | chr7_3:74081299-74081318 | Msa1123250:CDS | 40.0% |
| GTTGTTGGATGTGGAAATTC+TGG | + | chr7_3:74081493-74081512 | Msa1123250:CDS | 40.0% | |
| ! | TGGATGTGGAAATTCTGGAA+TGG | + | chr7_3:74081498-74081517 | Msa1123250:CDS | 40.0% |
| TCATCATGCTTTACCTTCCA+TGG | + | chr7_3:74081543-74081562 | Msa1123250:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | + | chr7_3:74081737-74081756 | Msa1123250:CDS | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | + | chr7_3:74081749-74081768 | Msa1123250:CDS | 40.0% | |
| !! | ATGGTTCATTTTGGGTGACA+TGG | + | chr7_3:74081801-74081820 | Msa1123250:CDS | 40.0% |
| TGGTATCAAAAGGCCTTCAA+TGG | + | chr7_3:74081831-74081850 | Msa1123250:CDS | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | + | chr7_3:74081832-74081851 | Msa1123250:CDS | 40.0% | |
| AACTTCAAAGGACCCATTGA+AGG | - | chr7_3:74081847-74081866 | None:intergenic | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | - | chr7_3:74081892-74081911 | None:intergenic | 40.0% |
| GGTGACATAAATGTTGTACC+TGG | + | chr7_3:74081928-74081947 | Msa1123250:CDS | 40.0% | |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | + | chr7_3:74081973-74081992 | Msa1123250:CDS | 40.0% |
| TATTCACCTGAAGCCAAGAA+GGG | - | chr7_3:74082053-74082072 | None:intergenic | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | - | chr7_3:74082054-74082073 | None:intergenic | 40.0% | |
| ! | AGTTGACTTAGATCCTCTTC+TGG | + | chr7_3:74082104-74082123 | Msa1123250:intron | 40.0% |
| CAACTAAGATTTAGCCAGAG+CGG | - | chr7_3:74082130-74082149 | None:intergenic | 40.0% | |
| ! | GACAACAAAGATTTTACCGG+AGG | + | chr7_3:74082187-74082206 | Msa1123250:intron | 40.0% |
| CATGTGGAAATGGCATCTTT+GGG | - | chr7_3:74082363-74082382 | None:intergenic | 40.0% | |
| CAGCATGTCTTAGAGAACAA+GGG | + | chr7_3:74081041-74081060 | Msa1123250:CDS | 40.0% | |
| AGCATGTCTTAGAGAACAAG+GGG | + | chr7_3:74081042-74081061 | Msa1123250:CDS | 40.0% | |
| CTGATTGCATAGCATCACTA+TGG | + | chr7_3:74081089-74081108 | Msa1123250:CDS | 40.0% | |
| GTGAAGTTTCAATCTGTCGT+AGG | - | chr7_3:74081125-74081144 | None:intergenic | 40.0% | |
| TGAACACACTCGTTGAATTG+CGG | - | chr7_3:74081268-74081287 | None:intergenic | 40.0% | |
| GCTAAGTATGATGAAACCAG+TGG | + | chr7_3:74081292-74081311 | Msa1123250:CDS | 40.0% | |
| !! | ATGATGAAACCAGTGGATTG+TGG | + | chr7_3:74081299-74081318 | Msa1123250:CDS | 40.0% |
| GTTGTTGGATGTGGAAATTC+TGG | + | chr7_3:74081493-74081512 | Msa1123250:CDS | 40.0% | |
| ! | TGGATGTGGAAATTCTGGAA+TGG | + | chr7_3:74081498-74081517 | Msa1123250:CDS | 40.0% |
| TCATCATGCTTTACCTTCCA+TGG | + | chr7_3:74081543-74081562 | Msa1123250:CDS | 40.0% | |
| TAGCGGTTATGATGTTGAAG+TGG | + | chr7_3:74081737-74081756 | Msa1123250:CDS | 40.0% | |
| TGTTGAAGTGGTTACCACTT+TGG | + | chr7_3:74081749-74081768 | Msa1123250:CDS | 40.0% | |
| !! | ATGGTTCATTTTGGGTGACA+TGG | + | chr7_3:74081801-74081820 | Msa1123250:CDS | 40.0% |
| TGGTATCAAAAGGCCTTCAA+TGG | + | chr7_3:74081831-74081850 | Msa1123250:CDS | 40.0% | |
| GGTATCAAAAGGCCTTCAAT+GGG | + | chr7_3:74081832-74081851 | Msa1123250:CDS | 40.0% | |
| AACTTCAAAGGACCCATTGA+AGG | - | chr7_3:74081847-74081866 | None:intergenic | 40.0% | |
| ! | AAAGCACCAATGTCCAAAAC+CGG | - | chr7_3:74081892-74081911 | None:intergenic | 40.0% |
| GGTGACATAAATGTTGTACC+TGG | + | chr7_3:74081928-74081947 | Msa1123250:CDS | 40.0% | |
| !! | GGTGAAGTTGAGCTTGTTAA+TGG | + | chr7_3:74081973-74081992 | Msa1123250:CDS | 40.0% |
| TATTCACCTGAAGCCAAGAA+GGG | - | chr7_3:74082053-74082072 | None:intergenic | 40.0% | |
| ATATTCACCTGAAGCCAAGA+AGG | - | chr7_3:74082054-74082073 | None:intergenic | 40.0% | |
| ! | AGTTGACTTAGATCCTCTTC+TGG | + | chr7_3:74082104-74082123 | Msa1123250:intron | 40.0% |
| CAACTAAGATTTAGCCAGAG+CGG | - | chr7_3:74082130-74082149 | None:intergenic | 40.0% | |
| ! | GACAACAAAGATTTTACCGG+AGG | + | chr7_3:74082187-74082206 | Msa1123250:intron | 40.0% |
| CATGTGGAAATGGCATCTTT+GGG | - | chr7_3:74082363-74082382 | None:intergenic | 40.0% | |
| GTCCATTGACCCAAATGCAA+CGG | - | chr7_3:74080982-74081001 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | + | chr7_3:74080992-74081011 | Msa1123250:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | + | chr7_3:74081040-74081059 | Msa1123250:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | - | chr7_3:74081070-74081089 | None:intergenic | 45.0% | |
| AGCTCTTTCGAGAACAACGA+AGG | - | chr7_3:74081071-74081090 | None:intergenic | 45.0% | |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | - | chr7_3:74081172-74081191 | None:intergenic | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | - | chr7_3:74081177-74081196 | None:intergenic | 45.0% |
| TCAGGGAAATCTTCAGGCAT+TGG | - | chr7_3:74081181-74081200 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | - | chr7_3:74081187-74081206 | None:intergenic | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | - | chr7_3:74081267-74081286 | None:intergenic | 45.0% | |
| !! | ATGAAACCAGTGGATTGTGG+AGG | + | chr7_3:74081302-74081321 | Msa1123250:CDS | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | + | chr7_3:74081303-74081322 | Msa1123250:CDS | 45.0% |
| TTCCATGGTTGTTCGTAGCT+CGG | + | chr7_3:74081558-74081577 | Msa1123250:CDS | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | + | chr7_3:74081756-74081775 | Msa1123250:CDS | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | - | chr7_3:74081766-74081785 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | + | chr7_3:74081870-74081889 | Msa1123250:CDS | 45.0% | |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | + | chr7_3:74081876-74081895 | Msa1123250:CDS | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | + | chr7_3:74081883-74081902 | Msa1123250:CDS | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | + | chr7_3:74081891-74081910 | Msa1123250:CDS | 45.0% |
| GATGCAGTTGTTCTTGCTAC+CGG | + | chr7_3:74082012-74082031 | Msa1123250:CDS | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | - | chr7_3:74082364-74082383 | None:intergenic | 45.0% | |
| ! | CCAAAGATGCCATTTCCACA+TGG | + | chr7_3:74082361-74082380 | Msa1123250:CDS | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | + | chr7_3:74082365-74082384 | Msa1123250:CDS | 45.0% |
| CCATTTCCACATGGTTGGAA+GGG | + | chr7_3:74082370-74082389 | Msa1123250:CDS | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | - | chr7_3:74082379-74082398 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | + | chr7_3:74082379-74082398 | Msa1123250:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | + | chr7_3:74082410-74082429 | Msa1123250:CDS | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | + | chr7_3:74082418-74082437 | Msa1123250:CDS | 45.0% | |
| GTCCATTGACCCAAATGCAA+CGG | - | chr7_3:74080982-74081001 | None:intergenic | 45.0% | |
| GTCAATGGACCTGTGATCAT+AGG | + | chr7_3:74080992-74081011 | Msa1123250:CDS | 45.0% | |
| GCAGCATGTCTTAGAGAACA+AGG | + | chr7_3:74081040-74081059 | Msa1123250:CDS | 45.0% | |
| GCTCTTTCGAGAACAACGAA+GGG | - | chr7_3:74081070-74081089 | None:intergenic | 45.0% | |
| AGCTCTTTCGAGAACAACGA+AGG | - | chr7_3:74081071-74081090 | None:intergenic | 45.0% | |
| !! | TCTTCAGGCATTGGAAGGTT+AGG | - | chr7_3:74081172-74081191 | None:intergenic | 45.0% |
| !! | GGAAATCTTCAGGCATTGGA+AGG | - | chr7_3:74081177-74081196 | None:intergenic | 45.0% |
| TCAGGGAAATCTTCAGGCAT+TGG | - | chr7_3:74081181-74081200 | None:intergenic | 45.0% | |
| GGGTATTCAGGGAAATCTTC+AGG | - | chr7_3:74081187-74081206 | None:intergenic | 45.0% | |
| GAACACACTCGTTGAATTGC+GGG | - | chr7_3:74081267-74081286 | None:intergenic | 45.0% | |
| !! | ATGAAACCAGTGGATTGTGG+AGG | + | chr7_3:74081302-74081321 | Msa1123250:CDS | 45.0% |
| !! | TGAAACCAGTGGATTGTGGA+GGG | + | chr7_3:74081303-74081322 | Msa1123250:CDS | 45.0% |
| TTCCATGGTTGTTCGTAGCT+CGG | + | chr7_3:74081558-74081577 | Msa1123250:CDS | 45.0% | |
| GTGGTTACCACTTTGGATTG+TGG | + | chr7_3:74081756-74081775 | Msa1123250:CDS | 45.0% | |
| AGCTTGTCCACAATCCAAAG+TGG | - | chr7_3:74081766-74081785 | None:intergenic | 45.0% | |
| GAACACAGAAGGAAAGACAC+CGG | + | chr7_3:74081870-74081889 | Msa1123250:CDS | 45.0% | |
| !!! | AGAAGGAAAGACACCGGTTT+TGG | + | chr7_3:74081876-74081895 | Msa1123250:CDS | 45.0% |
| !!! | AAGACACCGGTTTTGGACAT+TGG | + | chr7_3:74081883-74081902 | Msa1123250:CDS | 45.0% |
| !!! | GGTTTTGGACATTGGTGCTT+TGG | + | chr7_3:74081891-74081910 | Msa1123250:CDS | 45.0% |
| GATGCAGTTGTTCTTGCTAC+CGG | + | chr7_3:74082012-74082031 | Msa1123250:CDS | 45.0% | |
| CCATGTGGAAATGGCATCTT+TGG | - | chr7_3:74082364-74082383 | None:intergenic | 45.0% | |
| ! | CCAAAGATGCCATTTCCACA+TGG | + | chr7_3:74082361-74082380 | Msa1123250:CDS | 45.0% |
| ! | AGATGCCATTTCCACATGGT+TGG | + | chr7_3:74082365-74082384 | Msa1123250:CDS | 45.0% |
| CCATTTCCACATGGTTGGAA+GGG | + | chr7_3:74082370-74082389 | Msa1123250:CDS | 45.0% | |
| GAATTTCCCTTCCAACCATG+TGG | - | chr7_3:74082379-74082398 | None:intergenic | 45.0% | |
| CATGGTTGGAAGGGAAATTC+AGG | + | chr7_3:74082379-74082398 | Msa1123250:CDS | 45.0% | |
| CTGTAGGGTTCACAAAGAGA+GGG | + | chr7_3:74082410-74082429 | Msa1123250:CDS | 45.0% | |
| TTCACAAAGAGAGGGCTTTC+TGG | + | chr7_3:74082418-74082437 | Msa1123250:CDS | 45.0% | |
| AACGGCGTGAGAGAAAGTCT+TGG | - | chr7_3:74080964-74080983 | None:intergenic | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | + | chr7_3:74080969-74080988 | Msa1123250:CDS | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | + | chr7_3:74080970-74080989 | Msa1123250:CDS | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | + | chr7_3:74081007-74081026 | Msa1123250:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | + | chr7_3:74081018-74081037 | Msa1123250:CDS | 50.0% |
| CTTAACCCTCCACAATCCAC+TGG | - | chr7_3:74081311-74081330 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTGTTGTTGCTAC+TGG | + | chr7_3:74081355-74081374 | Msa1123250:CDS | 50.0% |
| GAGCTACGAACAACCATGGA+AGG | - | chr7_3:74081559-74081578 | None:intergenic | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | - | chr7_3:74081563-74081582 | None:intergenic | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | + | chr7_3:74082044-74082063 | Msa1123250:CDS | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | + | chr7_3:74082369-74082388 | Msa1123250:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | - | chr7_3:74082373-74082392 | None:intergenic | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | + | chr7_3:74082409-74082428 | Msa1123250:CDS | 50.0% | |
| GCAACGTCTATGACAAGCAG+TGG | - | chr7_3:74082524-74082543 | None:intergenic | 50.0% | |
| AACGGCGTGAGAGAAAGTCT+TGG | - | chr7_3:74080964-74080983 | None:intergenic | 50.0% | |
| TTCTCTCACGCCGTTGCATT+TGG | + | chr7_3:74080969-74080988 | Msa1123250:CDS | 50.0% | |
| TCTCTCACGCCGTTGCATTT+GGG | + | chr7_3:74080970-74080989 | Msa1123250:CDS | 50.0% | |
| ATCATAGGTGCAGGTCCATC+TGG | + | chr7_3:74081007-74081026 | Msa1123250:CDS | 50.0% | |
| !! | AGGTCCATCTGGTCTTGCAA+CGG | + | chr7_3:74081018-74081037 | Msa1123250:CDS | 50.0% |
| CTTAACCCTCCACAATCCAC+TGG | - | chr7_3:74081311-74081330 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTGTTGTTGCTAC+TGG | + | chr7_3:74081355-74081374 | Msa1123250:CDS | 50.0% |
| GAGCTACGAACAACCATGGA+AGG | - | chr7_3:74081559-74081578 | None:intergenic | 50.0% | |
| TACCGAGCTACGAACAACCA+TGG | - | chr7_3:74081563-74081582 | None:intergenic | 50.0% | |
| CAATGTCCCTTCTTGGCTTC+AGG | + | chr7_3:74082044-74082063 | Msa1123250:CDS | 50.0% | |
| GCCATTTCCACATGGTTGGA+AGG | + | chr7_3:74082369-74082388 | Msa1123250:CDS | 50.0% | |
| CCCTTCCAACCATGTGGAAA+TGG | - | chr7_3:74082373-74082392 | None:intergenic | 50.0% | |
| GCTGTAGGGTTCACAAAGAG+AGG | + | chr7_3:74082409-74082428 | Msa1123250:CDS | 50.0% | |
| GCAACGTCTATGACAAGCAG+TGG | - | chr7_3:74082524-74082543 | None:intergenic | 50.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | + | chr7_3:74080977-74080996 | Msa1123250:CDS | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | + | chr7_3:74080998-74081017 | Msa1123250:CDS | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | - | chr7_3:74081004-74081023 | None:intergenic | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | - | chr7_3:74082034-74082053 | None:intergenic | 55.0% | |
| ACCGCAGCAATGTCCCTTCT+TGG | + | chr7_3:74082037-74082056 | Msa1123250:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | - | chr7_3:74082041-74082060 | None:intergenic | 55.0% | |
| CGCCGTTGCATTTGGGTCAA+TGG | + | chr7_3:74080977-74080996 | Msa1123250:CDS | 55.0% | |
| GGACCTGTGATCATAGGTGC+AGG | + | chr7_3:74080998-74081017 | Msa1123250:CDS | 55.0% | |
| GGACCTGCACCTATGATCAC+AGG | - | chr7_3:74081004-74081023 | None:intergenic | 55.0% | |
| AGGGACATTGCTGCGGTAAC+CGG | - | chr7_3:74082034-74082053 | None:intergenic | 55.0% | |
| ACCGCAGCAATGTCCCTTCT+TGG | + | chr7_3:74082037-74082056 | Msa1123250:CDS | 55.0% | |
| GCCAAGAAGGGACATTGCTG+CGG | - | chr7_3:74082041-74082060 | None:intergenic | 55.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | - | chr7_3:74081025-74081044 | None:intergenic | 60.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | + | chr7_3:74082113-74082132 | Msa1123250:intron | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | - | chr7_3:74082120-74082139 | None:intergenic | 60.0% | |
| GCTGCCGTTGCAAGACCAGA+TGG | - | chr7_3:74081025-74081044 | None:intergenic | 60.0% | |
| AGATCCTCTTCTGGCCGCTC+TGG | + | chr7_3:74082113-74082132 | Msa1123250:intron | 60.0% | |
| TTAGCCAGAGCGGCCAGAAG+AGG | - | chr7_3:74082120-74082139 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 74080932 | 74082558 | 74080932 | ID=Msa1123250;Name=Msa1123250 |
| chr7_3 | mRNA | 74080932 | 74082558 | 74080932 | ID=Msa1123250-mRNA-1;Parent=Msa1123250;Name=Msa1123250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0|1|1|1|3|0|416 |
| chr7_3 | exon | 74080932 | 74081579 | 74080932 | ID=Msa1123250-mRNA-1:exon:19580;Parent=Msa1123250-mRNA-1 |
| chr7_3 | exon | 74081691 | 74082065 | 74081691 | ID=Msa1123250-mRNA-1:exon:19581;Parent=Msa1123250-mRNA-1 |
| chr7_3 | exon | 74082331 | 74082558 | 74082331 | ID=Msa1123250-mRNA-1:exon:19582;Parent=Msa1123250-mRNA-1 |
| chr7_3 | CDS | 74080932 | 74081579 | 74080932 | ID=Msa1123250-mRNA-1:cds;Parent=Msa1123250-mRNA-1 |
| chr7_3 | CDS | 74081691 | 74082065 | 74081691 | ID=Msa1123250-mRNA-1:cds;Parent=Msa1123250-mRNA-1 |
| chr7_3 | CDS | 74082331 | 74082558 | 74082331 | ID=Msa1123250-mRNA-1:cds;Parent=Msa1123250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
