AlfalfaGEDB | Msa0011040

M. sativa cultivar zhongmu-4 / Msa0011040

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF19160.3

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011040	sp\|O04086\|Y1105_ARATH	42.708	192	103	4	25	210	26	216	2.35e-37	140

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0011040	0.801856	7.389709e-49	-8.615850e-47
Msa0001510	Msa0011040	-0.809222	2.105338e-50	-8.615850e-47
Msa0004180	Msa0011040	-0.846743	1.792469e-59	-8.615850e-47
Msa0004940	Msa0011040	0.824168	9.339927e-54	-8.615850e-47
Msa0004990	Msa0011040	0.809114	2.220297e-50	-8.615850e-47
Msa0005560	Msa0011040	0.826143	3.188445e-54	-8.615850e-47
Msa0006080	Msa0011040	0.809404	1.924249e-50	-8.615850e-47
Msa0007570	Msa0011040	-0.810769	9.776463e-51	-8.615850e-47
Msa0010150	Msa0011040	0.821543	3.818357e-53	-8.615850e-47
Msa0011010	Msa0011040	0.976660	2.974491e-142	-8.615850e-47

Showing 1 to 10 of 1,616 entries

Previous1 2 3 4 5…162Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011040	MtrunA17_Chr1g0159601	93.365	211	13	1	1	211	46	255	6.64e-146	406
Msa0011040	MtrunA17_Chr1g0159611	78.676	136	29	0	1	136	46	181	4.52e-75	236
Msa0011040	MtrunA17_Chr8g0380681	45.536	224	102	6	4	209	2	223	8.86e-53	182
Msa0011040	MtrunA17_Chr8g0380681	39.000	200	109	6	18	205	691	889	8.50e-37	136
Msa0011040	MtrunA17_Chr2g0277731	43.750	208	108	4	9	209	12	217	4.70e-51	174
Msa0011040	MtrunA17_Chr4g0039131	42.969	128	70	2	86	211	1	127	6.56e-31	110

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0011040	AT1G11050.1	42.708	192	103	4	25	210	26	216	2.39e-38	140

Showing 1 to 1 of 1 entries

Previous1Next

Find 36 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGAAGGGACTAACGA+AGG	0.740560	1_1:-16710541	None:intergenic
AACAATGTTGTGTGTCAATT+GGG	0.477153	1_1:-16710378	None:intergenic
AAGAAGGGACTAACGAAGGT+TGG	0.536160	1_1:-16710537	None:intergenic
ACAAACAACTCAAGCTGCGC+AGG	0.551790	1_1:+16710586	Msa0011040:CDS
AGAAGGAGTAGCTATGATAA+GGG	0.514017	1_1:-16710281	None:intergenic
AGTATACAACTAGCTGTAGC+AGG	0.563837	1_1:-16710835	None:intergenic
ATTGAGTTGTGGAAACAAGA+AGG	0.531475	1_1:-16710553	None:intergenic
CAACAATGTTGTGTGTCAAT+TGG	0.393976	1_1:-16710379	None:intergenic
CAATCTCTTCTTAGTCTCTT+TGG	0.194083	1_1:+16710403	Msa0011040:CDS
CAGAAGGAGTAGCTATGATA+AGG	0.380662	1_1:-16710282	None:intergenic

Showing 1 to 10 of 36 entries

Previous1 2 3 4Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACAATGTTGTGTGTCAATT+GGG	-	chr1_1:16710381-16710400	None:intergenic	30.0%
GTATCACAAACATCAAAGAT+TGG	+	chr1_1:16710608-16710627	Msa0011040:CDS	30.0%
AAAGATTGGAAGCAAAAAGT+TGG	+	chr1_1:16710622-16710641	Msa0011040:CDS	30.0%
AGAAGGAGTAGCTATGATAA+GGG	-	chr1_1:16710284-16710303	None:intergenic	35.0%
CAACAATGTTGTGTGTCAAT+TGG	-	chr1_1:16710382-16710401	None:intergenic	35.0%
CAATCTCTTCTTAGTCTCTT+TGG	+	chr1_1:16710403-16710422	Msa0011040:CDS	35.0%
GAAAGAGTGAAGTTTCTTTC+AGG	-	chr1_1:16710447-16710466	None:intergenic	35.0%
CCTTTAGACACTTCTTGTAA+AGG	+	chr1_1:16710655-16710674	Msa0011040:CDS	35.0%
TAGCTATGATAAGGGTGAAG+AGG	-	chr1_1:16710276-16710295	None:intergenic	40.0%
CAGAAGGAGTAGCTATGATA+AGG	-	chr1_1:16710285-16710304	None:intergenic	40.0%

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Chromosome	Type	Strat	End	Strand	Name
chr1_1	gene	16710244	16710879	16710244	ID=Msa0011040;Name=Msa0011040
chr1_1	mRNA	16710244	16710879	16710244	ID=Msa0011040-mRNA-1;Parent=Msa0011040;Name=Msa0011040-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|211
chr1_1	exon	16710244	16710879	16710244	ID=Msa0011040-mRNA-1:exon:6061;Parent=Msa0011040-mRNA-1
chr1_1	CDS	16710244	16710879	16710244	ID=Msa0011040-mRNA-1:cds;Parent=Msa0011040-mRNA-1

Gene Sequence

>Msa0011040

ATGGATAACAAAGCAGTGTTCCTTCTCCTCCTCTTCACCCTTATCATAGCTACTCCTTCTGCTTCTGCAGTATCATGTCCTATGGATCTCAGCTATGTTGAGACCTTTCCATGGGACACATCAACCTGCAGAGACCCAATTGACACACAACATTGTTGTCAATCTCTTCTTAGTCTCTTTGGCATAGGACTTGCAAAACACCTGAAAGAAACTTCACTCTTTCAACTCCCTAATAAAAACACTTTAAAATCTTGCTTACAAGATTTCAAACTCAAACTTTCATGCTTAAAGATCCAACCTTCGTTAGTCCCTTCTTGTTTCCACAACTCAATTCAATTTGTCACAAACAACTCAAGCTGCGCAGGTATCACAAACATCAAAGATTGGAAGCAAAAAGTTGGTAGAATTAGCCCTTTAGACACTTCTTGTAAAGGTGATTTGAAATCGGACACTAGTTGCAGCACGTGCACTAATGCTGGTTTCAAAGTCACTTCTCAGCTTACAAGTATTGATCCAAAAAATGCAACTAAGTGCTTTTTCTTTTCAGTTTTATATGCTGTTGGTATTGTGAATCATTTTGGTCCTACAGATCCTGCTACAGCTAGTTGTATACTTGGTATCCCGCTTAGAAGATGA

Protein sequence

>Msa0011040

MDNKAVFLLLLFTLIIATPSASAVSCPMDLSYVETFPWDTSTCRDPIDTQHCCQSLLSLFGIGLAKHLKETSLFQLPNKNTLKSCLQDFKLKLSCLKIQPSLVPSCFHNSIQFVTNNSSCAGITNIKDWKQKVGRISPLDTSCKGDLKSDTSCSTCTNAGFKVTSQLTSIDPKNATKCFFFSVLYAVGIVNHFGPTDPATASCILGIPLRR*