AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0568300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568300 MtrunA17_Chr8g0383001 97.024 336 4 1 1 330 1 336 0.0 664
Msa0568300 MtrunA17_Chr2g0310591 35.088 171 99 2 166 327 218 385 2.01e-21 94.0
Msa0568300 MtrunA17_Chr7g0273361 29.114 158 99 3 182 328 178 333 7.57e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0568300 AT2G21960.1 82.332 283 50 0 48 330 50 332 1.06e-170 478
Msa0568300 AT1G56180.1 31.928 166 104 1 171 327 217 382 4.34e-19 87.4
Msa0568300 AT5G27290.1 28.428 299 181 11 51 327 46 333 2.34e-14 73.6

Find 89 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGCTTGGCTTACCCATTT+TGG 0.102537 4_1:-69914085 Msa0568300:CDS
GAAGCTCTGGTTGTGAATTT+AGG 0.115841 4_1:+69916471 None:intergenic
GAAGAACTCATGTTCAATTT+TGG 0.162931 4_1:+69912966 None:intergenic
CTTCGAGAGCTGACAACTTT+AGG 0.199826 4_1:-69915547 Msa0568300:CDS
GTCGATCCATGAAGCCTTAA+TGG 0.219380 4_1:-69913276 Msa0568300:CDS
ATTCTGGCTGGCCAGCTTCC+CGG 0.227667 4_1:-69915310 Msa0568300:CDS
TGTAATTGTTCCAACCTTAT+TGG 0.246969 4_1:+69916628 None:intergenic
ATCCAGTGAATATCCCAAAA+TGG 0.251435 4_1:+69914071 None:intergenic
TTCGAGAGCTGACAACTTTA+GGG 0.257197 4_1:-69915546 Msa0568300:CDS
AACTGGATTCTTGGGTATTC+TGG 0.263208 4_1:-69915326 Msa0568300:CDS
CTTGATCAACTGAGTGAAAT+TGG 0.263702 4_1:-69916122 Msa0568300:CDS
TTCTGGCTGGCCAGCTTCCC+GGG 0.284405 4_1:-69915309 Msa0568300:CDS
GCAATCCTTTCTTGATAATC+AGG 0.293245 4_1:+69914263 None:intergenic
AAGCTCTGGTTGTGAATTTA+GGG 0.294762 4_1:+69916472 None:intergenic
TTGGGATATTCACTGGATAT+TGG 0.298796 4_1:-69914066 Msa0568300:CDS
TTCTTTGTACCATACTTGAT+TGG 0.309773 4_1:-69914456 Msa0568300:CDS
AGTATTTCCTTAGTGGTATT+GGG 0.320539 4_1:-69914432 Msa0568300:CDS
GGCTGGAACAACTGGATTCT+TGG 0.323776 4_1:-69915335 Msa0568300:CDS
TGGCTGAGAACTCCATTTCT+TGG 0.327017 4_1:+69916094 None:intergenic
ATCTTTGCTGAGTTGTGGTT+TGG 0.340177 4_1:+69913488 None:intergenic
TTTCTAGTTGCTTATCTGCT+TGG 0.354201 4_1:-69914099 Msa0568300:intron
TTTACTGTGGCTGGAACAAC+TGG 0.355965 4_1:-69915343 Msa0568300:CDS
CTTTGCCATCGATGCCATTA+AGG 0.360946 4_1:+69913262 None:intergenic
AGCAACAAAATCTCACTAGA+TGG 0.367508 4_1:-69913464 Msa0568300:CDS
GCAACCTGCACCCTCCAATA+AGG 0.369206 4_1:-69916642 Msa0568300:five_prime_UTR
TTTGGTGGTGATGATGATTA+TGG 0.373375 4_1:+69916514 None:intergenic
GAGTATTTCCTTAGTGGTAT+TGG 0.376884 4_1:-69914433 Msa0568300:CDS
GGTTGATGTTGAAGCATGTT+TGG 0.383493 4_1:+69916496 None:intergenic
TCCTTAGTGGTATTGGGTAT+AGG 0.386228 4_1:-69914426 Msa0568300:CDS
GAAATACTCCCAATCAAGTA+TGG 0.386262 4_1:+69914447 None:intergenic
GATTGGGAGTATTTCCTTAG+TGG 0.396031 4_1:-69914439 Msa0568300:CDS
TCTTTGTACCATACTTGATT+GGG 0.396789 4_1:-69914455 Msa0568300:CDS
TGCAGCAGAGGAAGAAGCTC+TGG 0.413680 4_1:+69916458 None:intergenic
CAGATTGGCTGTTGTATCAA+TGG 0.423423 4_1:-69913698 Msa0568300:CDS
TCGATGCCATTAAGGCTTCA+TGG 0.429892 4_1:+69913270 None:intergenic
TGTTGTATCAATGGCTGGAC+TGG 0.438705 4_1:-69913689 Msa0568300:CDS
AAATTGGTTGGGCCAAGAAA+TGG 0.440413 4_1:-69916106 Msa0568300:CDS
TGAGAGTTGAGAAGCTTTGT+GGG 0.445509 4_1:+69916683 None:intergenic
TCCAGTGAATATCCCAAAAT+GGG 0.449171 4_1:+69914072 None:intergenic
GCTTCTTCCTCTGCTGCACC+TGG 0.456080 4_1:-69916453 Msa0568300:CDS
TTAACATATGACAAGGTTGT+TGG 0.456845 4_1:-69913655 Msa0568300:CDS
ATGTCAATCTCATTGATGAT+AGG 0.463698 4_1:-69914035 Msa0568300:CDS
GAGTCCTTCCCTTTGAGAAA+CGG 0.465517 4_1:+69913034 None:intergenic
TTGAGAGTTGAGAAGCTTTG+TGG 0.466186 4_1:+69916682 None:intergenic
CCAACCTTATTGGAGGGTGC+AGG 0.467129 4_1:+69916638 None:intergenic
TTAACTTTCCGTTTCTCAAA+GGG 0.467194 4_1:-69913042 Msa0568300:three_prime_UTR
GCTGGAACAACTGGATTCTT+GGG 0.474319 4_1:-69915334 Msa0568300:CDS
TGCTGATCTTTGCTGAGTTG+TGG 0.475443 4_1:+69913483 None:intergenic
CTTGAAAAGCTTCTCTATAG+TGG 0.485483 4_1:-69914012 Msa0568300:CDS
GGATTCTTGGGTATTCTGGC+TGG 0.487468 4_1:-69915322 Msa0568300:CDS
GGATACATACCCCGGGAAGC+TGG 0.488405 4_1:+69915299 None:intergenic
AGACAGCAATGCAGTTAAAG+AGG 0.489669 4_1:-69916147 Msa0568300:CDS
GGTATAGGCAGCACATCTCC+TGG 0.494301 4_1:-69914411 Msa0568300:CDS
TTGATGCTAAGGAGATAGAT+AGG 0.494421 4_1:-69913984 Msa0568300:intron
AATGGCATCGATGGCAAAGA+AGG 0.499709 4_1:-69913258 Msa0568300:CDS
GTCGACACCAGGTGCAGCAG+AGG 0.506013 4_1:+69916446 None:intergenic
ACCGTACGACGTGAAACATA+TGG 0.511639 4_1:+69916074 None:intergenic
TTGGCTGTTGTATCAATGGC+TGG 0.512860 4_1:-69913694 Msa0568300:CDS
TGTTGACTGATGCAGGATTG+GGG 0.521890 4_1:-69914480 Msa0568300:intron
GCCATATGTTTCACGTCGTA+CGG 0.524271 4_1:-69916075 Msa0568300:intron
ACTCCAGCTCTAGAGATCAA+TGG 0.529354 4_1:+69913012 None:intergenic
TAGTGGTCAGCTTGATGCTA+AGG 0.529877 4_1:-69913995 Msa0568300:CDS
TTGGGTAAAGATGATGAGTA+AGG 0.530143 4_1:+69916555 None:intergenic
AATTGTTCCAACCTTATTGG+AGG 0.534350 4_1:+69916631 None:intergenic
ATCAACTGAGTGAAATTGGT+TGG 0.534376 4_1:-69916118 Msa0568300:CDS
GTTAACTTTCCGTTTCTCAA+AGG 0.534587 4_1:-69913043 Msa0568300:three_prime_UTR
GCCTATACCCAATACCACTA+AGG 0.541332 4_1:+69914425 None:intergenic
TGAAGCCTTAATGGCATCGA+TGG 0.543498 4_1:-69913267 Msa0568300:CDS
TCAACTGAGTGAAATTGGTT+GGG 0.547534 4_1:-69916117 Msa0568300:CDS
AAAAGCTGCTAATAGCTGCT+TGG 0.552163 4_1:+69914297 None:intergenic
ACTCCATTGATCTCTAGAGC+TGG 0.564124 4_1:-69913015 Msa0568300:three_prime_UTR
CCTGCACCCTCCAATAAGGT+TGG 0.565565 4_1:-69916638 Msa0568300:five_prime_UTR
TTCTGACACTAGGAATTGCA+AGG 0.566777 4_1:+69915506 None:intergenic
ATTGTTCCAACCTTATTGGA+GGG 0.569041 4_1:+69916632 None:intergenic
TGATGTTGAAGCATGTTTGG+TGG 0.574649 4_1:+69916499 None:intergenic
CAGGTTGCAGTAGATAAGAA+AGG 0.575092 4_1:+69916657 None:intergenic
GCAACAAAATCTCACTAGAT+GGG 0.575785 4_1:-69913463 Msa0568300:CDS
CTTTCCGTTTCTCAAAGGGA+AGG 0.577870 4_1:-69913038 Msa0568300:three_prime_UTR
TCTTGATTCTGCCATTGCCA+AGG 0.579069 4_1:-69916415 Msa0568300:intron
CTCTGGTTGTGAATTTAGGG+AGG 0.583321 4_1:+69916475 None:intergenic
ATGGTCAATTACCTTGGCAA+TGG 0.596299 4_1:+69916404 None:intergenic
CTCACATCATTTCTGACACT+AGG 0.596674 4_1:+69915496 None:intergenic
ATGGCTGGACTGGCAGCAGA+AGG 0.600695 4_1:-69913679 Msa0568300:CDS
AGAGTGTTGAGGTCGACACC+AGG 0.613261 4_1:+69916435 None:intergenic
TCTGGCTGGCCAGCTTCCCG+GGG 0.613765 4_1:-69915308 Msa0568300:intron
GTATAGGCAGCACATCTCCT+GGG 0.621976 4_1:-69914410 Msa0568300:intron
TGGCAGAATCAAGAGTGTTG+AGG 0.645439 4_1:+69916424 None:intergenic
AGAAGGTTTAACATATGACA+AGG 0.674545 4_1:-69913662 Msa0568300:CDS
TAAAGATGATGAGTAAGGCA+TGG 0.722574 4_1:+69916560 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAATTATAATATGGTTT+GGG + chr4_1:69913120-69913139 None:intergenic 10.0%
!! TTATGGTAAAAATTATAATA+TGG + chr4_1:69913126-69913145 None:intergenic 10.0%
!! GTAAAAATTATAATATGGTT+TGG + chr4_1:69913121-69913140 None:intergenic 15.0%
!! ACTTCAAATAAAAAATGTAA+TGG + chr4_1:69913272-69913291 None:intergenic 15.0%
!!! TTAAAAAGGAAATTTTATCT+TGG - chr4_1:69913897-69913916 Msa0568300:intron 15.0%
!!! TAAAAAGGAAATTTTATCTT+GGG - chr4_1:69913898-69913917 Msa0568300:intron 15.0%
!! GCATATGAATATTTAAATAT+GGG + chr4_1:69914039-69914058 None:intergenic 15.0%
!! TGCATATGAATATTTAAATA+TGG + chr4_1:69914040-69914059 None:intergenic 15.0%
!! GTTAACACAAATAAAAAAAA+TGG + chr4_1:69916597-69916616 None:intergenic 15.0%
!! GTTATTATAAAAATTACACG+AGG - chr4_1:69913290-69913309 Msa0568300:CDS 20.0%
!!! TAAATATTTGGAAGAAGTAT+TGG + chr4_1:69913833-69913852 None:intergenic 20.0%
!! TACTTCTTCCAAATATTTAA+AGG - chr4_1:69913834-69913853 Msa0568300:intron 20.0%
!! ACTTCTTCCAAATATTTAAA+GGG - chr4_1:69913835-69913854 Msa0568300:intron 20.0%
!! AACATTTCCCTTTAAATATT+TGG + chr4_1:69913845-69913864 None:intergenic 20.0%
!!! ACTTGTTAAGAAGTTTAAAA+AGG - chr4_1:69913883-69913902 Msa0568300:intron 20.0%
!!! AAGTGTAAATATTTTAGAAC+TGG - chr4_1:69915010-69915029 Msa0568300:intron 20.0%
!! TCTAATTAATATGTTAGTGT+AGG - chr4_1:69915329-69915348 Msa0568300:CDS 20.0%
!! TTAACAAATGACTACAAATT+GGG + chr4_1:69915884-69915903 None:intergenic 20.0%
!!! TTCACATATTTTGAAAATAG+AGG + chr4_1:69916061-69916080 None:intergenic 20.0%
! AAGGATTGAATACAATTTCA+CGG + chr4_1:69913406-69913425 None:intergenic 25.0%
! CAGAACATCAACATTTATAA+TGG + chr4_1:69913612-69913631 None:intergenic 25.0%
! CATTATAAATGTTGATGTTC+TGG - chr4_1:69913610-69913629 Msa0568300:intron 25.0%
!! AACTTTAGGGATTAAAAATG+CGG - chr4_1:69914121-69914140 Msa0568300:intron 25.0%
!!! TCTATTTTTGCAGTATCAAA+TGG - chr4_1:69914198-69914217 Msa0568300:intron 25.0%
! GTATCAAATGGAATTATACA+TGG - chr4_1:69914210-69914229 Msa0568300:intron 25.0%
!! TACTCAGATAAATTTGGAAT+TGG + chr4_1:69914540-69914559 None:intergenic 25.0%
!! TCAAAGTACTCAGATAAATT+TGG + chr4_1:69914546-69914565 None:intergenic 25.0%
!!! TTCTGCATTATGCTTTTTTT+AGG - chr4_1:69914891-69914910 Msa0568300:intron 25.0%
!!! TCTGCATTATGCTTTTTTTA+GGG - chr4_1:69914892-69914911 Msa0568300:intron 25.0%
!!! CCATTTTCACTTTGTTATTT+AGG + chr4_1:69915060-69915079 None:intergenic 25.0%
! CCTAAATAACAAAGTGAAAA+TGG - chr4_1:69915057-69915076 Msa0568300:intron 25.0%
!! TTTTTCCTGATTATCAAGAA+AGG - chr4_1:69915386-69915405 Msa0568300:intron 25.0%
! GATAGATAGGTATATTTACT+AGG - chr4_1:69915683-69915702 Msa0568300:intron 25.0%
! TAGTGCATATTCTTAAATCA+CGG - chr4_1:69915712-69915731 Msa0568300:intron 25.0%
! TATATGATATGACATGAACA+CGG - chr4_1:69915797-69915816 Msa0568300:intron 25.0%
! CTTAACAAATGACTACAAAT+TGG + chr4_1:69915885-69915904 None:intergenic 25.0%
!!! TATTGCTTGTTTTTTCAGAT+TGG - chr4_1:69915941-69915960 Msa0568300:intron 25.0%
!! AAGTATATATTTTGCTACAG+AGG - chr4_1:69916130-69916149 Msa0568300:CDS 25.0%
! ATTTCAAAAGCTCATATTTG+TGG - chr4_1:69916266-69916285 Msa0568300:intron 25.0%
!! CTGCAAATATAAGCTTTTTA+AGG + chr4_1:69916323-69916342 None:intergenic 25.0%
! CTTAAAAAGCTTATATTTGC+AGG - chr4_1:69916321-69916340 Msa0568300:intron 25.0%
TGTAATTGTTCCAACCTTAT+TGG + chr4_1:69913029-69913048 None:intergenic 30.0%
AATGTAATGGTCAATTACCT+TGG + chr4_1:69913259-69913278 None:intergenic 30.0%
AGGATTGAATACAATTTCAC+GGG + chr4_1:69913405-69913424 None:intergenic 30.0%
CAATCCTTTGTTCATTGAAA+TGG - chr4_1:69913418-69913437 Msa0568300:intron 30.0%
ACTACCATTTCAATGAACAA+AGG + chr4_1:69913425-69913444 None:intergenic 30.0%
AAATGGTAGTTTATACCGTT+TGG - chr4_1:69913435-69913454 Msa0568300:intron 30.0%
AATGGTAGTTTATACCGTTT+GGG - chr4_1:69913436-69913455 Msa0568300:intron 30.0%
GTTCAGTTATATTACCCAAA+CGG + chr4_1:69913453-69913472 None:intergenic 30.0%
CAATGTAACAATATGTGTTG+TGG + chr4_1:69913736-69913755 None:intergenic 30.0%
AATATTTAACTAGTGCCCTA+AGG - chr4_1:69913997-69914016 Msa0568300:CDS 30.0%
ATATTTAACTAGTGCCCTAA+GGG - chr4_1:69913998-69914017 Msa0568300:CDS 30.0%
ACATATAACACAGATCTTTG+TGG - chr4_1:69914271-69914290 Msa0568300:CDS 30.0%
TGAAAAAGGAAATTCCATTC+TGG + chr4_1:69914800-69914819 None:intergenic 30.0%
TAGCAATTGTTCAAAAGAAG+TGG + chr4_1:69914856-69914875 None:intergenic 30.0%
GTAAGAAGGTGAAAACTATT+GGG + chr4_1:69915114-69915133 None:intergenic 30.0%
AGTAAGAAGGTGAAAACTAT+TGG + chr4_1:69915115-69915134 None:intergenic 30.0%
! TGATAAATGAGAGAGTTGAT+GGG + chr4_1:69915139-69915158 None:intergenic 30.0%
ATGATAAATGAGAGAGTTGA+TGG + chr4_1:69915140-69915159 None:intergenic 30.0%
TTCTTTGTACCATACTTGAT+TGG - chr4_1:69915198-69915217 Msa0568300:intron 30.0%
TCTTTGTACCATACTTGATT+GGG - chr4_1:69915199-69915218 Msa0568300:intron 30.0%
AGTATTTCCTTAGTGGTATT+GGG - chr4_1:69915222-69915241 Msa0568300:intron 30.0%
! TAATTAGAGCATTAATGCTG+TGG + chr4_1:69915317-69915336 None:intergenic 30.0%
TATCAGCCATAAAAGCAATA+GGG + chr4_1:69915449-69915468 None:intergenic 30.0%
ATATCAGCCATAAAAGCAAT+AGG + chr4_1:69915450-69915469 None:intergenic 30.0%
! ATGTCAATCTCATTGATGAT+AGG - chr4_1:69915619-69915638 Msa0568300:intron 30.0%
TGTCGAATTTCACAAAATCA+TGG + chr4_1:69915743-69915762 None:intergenic 30.0%
TTCTAAACTAGTTGTCTGTT+TGG + chr4_1:69915771-69915790 None:intergenic 30.0%
GTGTTCATGTCATATCATAT+AGG + chr4_1:69915798-69915817 None:intergenic 30.0%
AAGTACCAATGTGAAGAAAT+AGG - chr4_1:69915909-69915928 Msa0568300:intron 30.0%
! CTTTACCTATTTCTTCACAT+TGG + chr4_1:69915917-69915936 None:intergenic 30.0%
AGAAGGTTTAACATATGACA+AGG - chr4_1:69915992-69916011 Msa0568300:intron 30.0%
TTAACATATGACAAGGTTGT+TGG - chr4_1:69915999-69916018 Msa0568300:intron 30.0%
GACAAAAATGCATAAACTTG+AGG + chr4_1:69916301-69916320 None:intergenic 30.0%
TTAACTTTCCGTTTCTCAAA+GGG - chr4_1:69916612-69916631 Msa0568300:five_prime_UTR 30.0%
!! TTTTGGTTGGAACAATTCTT+GGG + chr4_1:69916674-69916693 None:intergenic 30.0%
!!! ATTTTGGTTGGAACAATTCT+TGG + chr4_1:69916675-69916694 None:intergenic 30.0%
ATTGTTCCAACCTTATTGGA+GGG + chr4_1:69913025-69913044 None:intergenic 35.0%
AATTGTTCCAACCTTATTGG+AGG + chr4_1:69913026-69913045 None:intergenic 35.0%
TAAAGATGATGAGTAAGGCA+TGG + chr4_1:69913097-69913116 None:intergenic 35.0%
TTGGGTAAAGATGATGAGTA+AGG + chr4_1:69913102-69913121 None:intergenic 35.0%
!! TTTGGTGGTGATGATGATTA+TGG + chr4_1:69913143-69913162 None:intergenic 35.0%
! AAGCTCTGGTTGTGAATTTA+GGG + chr4_1:69913185-69913204 None:intergenic 35.0%
GGATTGAATACAATTTCACG+GGG + chr4_1:69913404-69913423 None:intergenic 35.0%
CTTGATCAACTGAGTGAAAT+TGG - chr4_1:69913532-69913551 Msa0568300:intron 35.0%
ATCAACTGAGTGAAATTGGT+TGG - chr4_1:69913536-69913555 Msa0568300:intron 35.0%
TCAACTGAGTGAAATTGGTT+GGG - chr4_1:69913537-69913556 Msa0568300:intron 35.0%
TAACACTTCACTTCAGATTG+AGG - chr4_1:69913678-69913697 Msa0568300:CDS 35.0%
AACACTTCACTTCAGATTGA+GGG - chr4_1:69913679-69913698 Msa0568300:CDS 35.0%
AAATGTTAACAAGTGCCCTT+GGG - chr4_1:69913858-69913877 Msa0568300:intron 35.0%
! AGTAACAAAGAAGAGTGCAA+GGG + chr4_1:69914379-69914398 None:intergenic 35.0%
! AAGTAACAAAGAAGAGTGCA+AGG + chr4_1:69914380-69914399 None:intergenic 35.0%
!! AGTAGTGTTATTTGCAAGTG+TGG - chr4_1:69914457-69914476 Msa0568300:CDS 35.0%
AAGTGTGGATATAGCATTCA+TGG - chr4_1:69914472-69914491 Msa0568300:intron 35.0%
AATTTGATGTCGCAATGAAG+CGG + chr4_1:69914588-69914607 None:intergenic 35.0%
CTACAGCTTGAAATTATGAC+TGG - chr4_1:69914674-69914693 Msa0568300:intron 35.0%
AGAGTTAAAAGAAGCCAGAA+TGG - chr4_1:69914783-69914802 Msa0568300:intron 35.0%
CAGAAGTTTAAGAATGTCCT+TGG - chr4_1:69914975-69914994 Msa0568300:intron 35.0%
! CACTTTTCACTTATCTACCA+AGG + chr4_1:69914995-69915014 None:intergenic 35.0%
GGCATAACAAGCAAGTTAAA+AGG + chr4_1:69915039-69915058 None:intergenic 35.0%
GAAATACTCCCAATCAAGTA+TGG + chr4_1:69915210-69915229 None:intergenic 35.0%
GAGTATTTCCTTAGTGGTAT+TGG - chr4_1:69915221-69915240 Msa0568300:intron 35.0%
TAAGAACTACGCTTACAAGT+TGG - chr4_1:69915267-69915286 Msa0568300:intron 35.0%
! GCAATCCTTTCTTGATAATC+AGG + chr4_1:69915394-69915413 None:intergenic 35.0%
!! TTTCTAGTTGCTTATCTGCT+TGG - chr4_1:69915555-69915574 Msa0568300:CDS 35.0%
TCCAGTGAATATCCCAAAAT+GGG + chr4_1:69915585-69915604 None:intergenic 35.0%
ATCCAGTGAATATCCCAAAA+TGG + chr4_1:69915586-69915605 None:intergenic 35.0%
TTGGGATATTCACTGGATAT+TGG - chr4_1:69915588-69915607 Msa0568300:intron 35.0%
CTTGAAAAGCTTCTCTATAG+TGG - chr4_1:69915642-69915661 Msa0568300:intron 35.0%
TTGATGCTAAGGAGATAGAT+AGG - chr4_1:69915670-69915689 Msa0568300:intron 35.0%
AACTAGTTGTCTGTTTGGAT+TGG + chr4_1:69915766-69915785 None:intergenic 35.0%
AGCAACAAAATCTCACTAGA+TGG - chr4_1:69916190-69916209 Msa0568300:intron 35.0%
GCAACAAAATCTCACTAGAT+GGG - chr4_1:69916191-69916210 Msa0568300:intron 35.0%
TCAAAAGCTCATATTTGTGG+AGG - chr4_1:69916269-69916288 Msa0568300:intron 35.0%
GTTAACTTTCCGTTTCTCAA+AGG - chr4_1:69916611-69916630 Msa0568300:five_prime_UTR 35.0%
CAGGTTGCAGTAGATAAGAA+AGG + chr4_1:69913000-69913019 None:intergenic 40.0%
TGATGTTGAAGCATGTTTGG+TGG + chr4_1:69913158-69913177 None:intergenic 40.0%
! GGTTGATGTTGAAGCATGTT+TGG + chr4_1:69913161-69913180 None:intergenic 40.0%
! GAAGCTCTGGTTGTGAATTT+AGG + chr4_1:69913186-69913205 None:intergenic 40.0%
ATGGTCAATTACCTTGGCAA+TGG + chr4_1:69913253-69913272 None:intergenic 40.0%
ACGAGGTTATACTCGATGAT+GGG - chr4_1:69913307-69913326 Msa0568300:CDS 40.0%
AGACAGCAATGCAGTTAAAG+AGG - chr4_1:69913507-69913526 Msa0568300:CDS 40.0%
AAATTGGTTGGGCCAAGAAA+TGG - chr4_1:69913548-69913567 Msa0568300:intron 40.0%
! ATGTTCTGGATAGATGCCAA+GGG - chr4_1:69913624-69913643 Msa0568300:intron 40.0%
TTGCTTATTGCTATGTCCCT+TGG + chr4_1:69913643-69913662 None:intergenic 40.0%
GGTGTATCTTACATGTGTTG+TGG - chr4_1:69913700-69913719 Msa0568300:intron 40.0%
ATGATGTTCGCGTATGTATC+AGG - chr4_1:69913781-69913800 Msa0568300:intron 40.0%
GAAATGTTAACAAGTGCCCT+TGG - chr4_1:69913857-69913876 Msa0568300:intron 40.0%
AATGTTAACAAGTGCCCTTG+GGG - chr4_1:69913859-69913878 Msa0568300:intron 40.0%
CTTGTTAACCAATGCCCTTA+GGG + chr4_1:69914015-69914034 None:intergenic 40.0%
TCTTGTTAACCAATGCCCTT+AGG + chr4_1:69914016-69914035 None:intergenic 40.0%
TGATGTCTGTCGCACAAATT+TGG + chr4_1:69914087-69914106 None:intergenic 40.0%
TTCGAGAGCTGACAACTTTA+GGG - chr4_1:69914108-69914127 Msa0568300:intron 40.0%
TTCTGACACTAGGAATTGCA+AGG + chr4_1:69914151-69914170 None:intergenic 40.0%
CTCACATCATTTCTGACACT+AGG + chr4_1:69914161-69914180 None:intergenic 40.0%
AACTGGATTCTTGGGTATTC+TGG - chr4_1:69914328-69914347 Msa0568300:intron 40.0%
GCATTCATGGTTTCACATTG+TGG - chr4_1:69914485-69914504 Msa0568300:intron 40.0%
AGCTTGAAATTATGACTGGC+AGG - chr4_1:69914678-69914697 Msa0568300:intron 40.0%
! GGTAGGCTTGTAGTCTTTTA+TGG - chr4_1:69914711-69914730 Msa0568300:intron 40.0%
ACTTGTGATGCAGGTGAAAA+AGG + chr4_1:69914814-69914833 None:intergenic 40.0%
GTAGACTAAACTTGTGATGC+AGG + chr4_1:69914823-69914842 None:intergenic 40.0%
!! TGTCTCCTCTTTGAAGTTGA+CGG - chr4_1:69914923-69914942 Msa0568300:intron 40.0%
!! AGAGTTGATGGGAAGTAAGA+AGG + chr4_1:69915128-69915147 None:intergenic 40.0%
! TAATGCTTGTTGACTGATGC+AGG - chr4_1:69915167-69915186 Msa0568300:intron 40.0%
! TTGTTGACTGATGCAGGATT+GGG - chr4_1:69915173-69915192 Msa0568300:intron 40.0%
!! GATTGGGAGTATTTCCTTAG+TGG - chr4_1:69915215-69915234 Msa0568300:intron 40.0%
! TCCTTAGTGGTATTGGGTAT+AGG - chr4_1:69915228-69915247 Msa0568300:intron 40.0%
AAAAGCTGCTAATAGCTGCT+TGG + chr4_1:69915360-69915379 None:intergenic 40.0%
TAGGGCAGTACTCAAAAAGT+GGG + chr4_1:69915431-69915450 None:intergenic 40.0%
ATAGGGCAGTACTCAAAAAG+TGG + chr4_1:69915432-69915451 None:intergenic 40.0%
!! GTACTGCCCTATTGCTTTTA+TGG - chr4_1:69915440-69915459 Msa0568300:intron 40.0%
!!! ACCCATTTTGGGATATTCAC+TGG - chr4_1:69915581-69915600 Msa0568300:intron 40.0%
TATGACATGAACACGGAATG+TGG - chr4_1:69915804-69915823 Msa0568300:intron 40.0%
! CAGATTGGCTGTTGTATCAA+TGG - chr4_1:69915956-69915975 Msa0568300:intron 40.0%
GAAAATAGAGGTCTCAAACC+TGG + chr4_1:69916049-69916068 None:intergenic 40.0%
ATCTTTGCTGAGTTGTGGTT+TGG + chr4_1:69916169-69916188 None:intergenic 40.0%
CTCTGGTTGTGAATTTAGGG+AGG + chr4_1:69913182-69913201 None:intergenic 45.0%
!! TGGCAGAATCAAGAGTGTTG+AGG + chr4_1:69913233-69913252 None:intergenic 45.0%
TCTTGATTCTGCCATTGCCA+AGG - chr4_1:69913239-69913258 Msa0568300:CDS 45.0%
CACGAGGTTATACTCGATGA+TGG - chr4_1:69913306-69913325 Msa0568300:CDS 45.0%
CGAGGTTATACTCGATGATG+GGG - chr4_1:69913308-69913327 Msa0568300:CDS 45.0%
TGGCTGAGAACTCCATTTCT+TGG + chr4_1:69913563-69913582 None:intergenic 45.0%
GCCATATGTTTCACGTCGTA+CGG - chr4_1:69913579-69913598 Msa0568300:intron 45.0%
ACCGTACGACGTGAAACATA+TGG + chr4_1:69913583-69913602 None:intergenic 45.0%
! GATGTTCTGGATAGATGCCA+AGG - chr4_1:69913623-69913642 Msa0568300:intron 45.0%
CTTCTTAACAAGTGCCCCAA+GGG + chr4_1:69913876-69913895 None:intergenic 45.0%
ACTTCTTAACAAGTGCCCCA+AGG + chr4_1:69913877-69913896 None:intergenic 45.0%
TCTGTCGCACAAATTTGGAG+AGG + chr4_1:69914082-69914101 None:intergenic 45.0%
CTTCGAGAGCTGACAACTTT+AGG - chr4_1:69914107-69914126 Msa0568300:intron 45.0%
AACACAGATCTTTGTGGTGC+AGG - chr4_1:69914277-69914296 Msa0568300:CDS 45.0%
! GGCAGCTTTTCTCTTTACTG+TGG - chr4_1:69914298-69914317 Msa0568300:CDS 45.0%
! GCTTTTCTCTTTACTGTGGC+TGG - chr4_1:69914302-69914321 Msa0568300:CDS 45.0%
TTTACTGTGGCTGGAACAAC+TGG - chr4_1:69914311-69914330 Msa0568300:intron 45.0%
GCTGGAACAACTGGATTCTT+GGG - chr4_1:69914320-69914339 Msa0568300:intron 45.0%
ATTATGACTGGCAGGCCATT+TGG - chr4_1:69914686-69914705 Msa0568300:intron 45.0%
!! GTCTCCTCTTTGAAGTTGAC+GGG - chr4_1:69914924-69914943 Msa0568300:intron 45.0%
! CTTGTTGACTGATGCAGGAT+TGG - chr4_1:69915172-69915191 Msa0568300:intron 45.0%
! TGTTGACTGATGCAGGATTG+GGG - chr4_1:69915174-69915193 Msa0568300:intron 45.0%
GCCTATACCCAATACCACTA+AGG + chr4_1:69915232-69915251 None:intergenic 45.0%
TGTAAGCGTAGTTCTTACCC+AGG + chr4_1:69915264-69915283 None:intergenic 45.0%
! TCTGCTTGGCTTACCCATTT+TGG - chr4_1:69915569-69915588 Msa0568300:intron 45.0%
! CTGCTTGGCTTACCCATTTT+GGG - chr4_1:69915570-69915589 Msa0568300:intron 45.0%
TAGTGGTCAGCTTGATGCTA+AGG - chr4_1:69915659-69915678 Msa0568300:intron 45.0%
TTGGCTGTTGTATCAATGGC+TGG - chr4_1:69915960-69915979 Msa0568300:intron 45.0%
TGTTGTATCAATGGCTGGAC+TGG - chr4_1:69915965-69915984 Msa0568300:intron 45.0%
! TGCTGATCTTTTCACTCTCC+AGG - chr4_1:69916028-69916047 Msa0568300:intron 45.0%
TGCTGATCTTTGCTGAGTTG+TGG + chr4_1:69916174-69916193 None:intergenic 45.0%
GTCGATCCATGAAGCCTTAA+TGG - chr4_1:69916378-69916397 Msa0568300:intron 45.0%
TCGATGCCATTAAGGCTTCA+TGG + chr4_1:69916387-69916406 None:intergenic 45.0%
! TGAAGCCTTAATGGCATCGA+TGG - chr4_1:69916387-69916406 Msa0568300:intron 45.0%
CTTTGCCATCGATGCCATTA+AGG + chr4_1:69916395-69916414 None:intergenic 45.0%
!! AATGGCATCGATGGCAAAGA+AGG - chr4_1:69916396-69916415 Msa0568300:intron 45.0%
CTTTCCGTTTCTCAAAGGGA+AGG - chr4_1:69916616-69916635 Msa0568300:five_prime_UTR 45.0%
! GAGTCCTTCCCTTTGAGAAA+CGG + chr4_1:69916623-69916642 None:intergenic 45.0%
!! ACTCCATTGATCTCTAGAGC+TGG - chr4_1:69916639-69916658 Msa0568300:five_prime_UTR 45.0%
!! ACTCCAGCTCTAGAGATCAA+TGG + chr4_1:69916645-69916664 None:intergenic 45.0%
!! CTCGATGATGGGGAACATGA+AGG - chr4_1:69913318-69913337 Msa0568300:intron 50.0%
! AACTAGTGCCCTAAGGGCAT+TGG - chr4_1:69914004-69914023 Msa0568300:CDS 50.0%
GGCTGGAACAACTGGATTCT+TGG - chr4_1:69914319-69914338 Msa0568300:intron 50.0%
GGATTCTTGGGTATTCTGGC+TGG - chr4_1:69914332-69914351 Msa0568300:intron 50.0%
AGTGCAAGGGATACATACCC+CGG + chr4_1:69914366-69914385 None:intergenic 50.0%
CTACAAGCCTACCAGCCAAA+TGG + chr4_1:69914704-69914723 None:intergenic 50.0%
TGAGCCCGTCAACTTCAAAG+AGG + chr4_1:69914931-69914950 None:intergenic 50.0%
GTATAGGCAGCACATCTCCT+GGG - chr4_1:69915244-69915263 Msa0568300:intron 50.0%
GCTGTGGCAAACACTGAAGA+GGG + chr4_1:69915301-69915320 None:intergenic 50.0%
TGCTGTGGCAAACACTGAAG+AGG + chr4_1:69915302-69915321 None:intergenic 50.0%
GCAACCTGCACCCTCCAATA+AGG - chr4_1:69913012-69913031 Msa0568300:three_prime_UTR 55.0%
! CCAACCTTATTGGAGGGTGC+AGG + chr4_1:69913019-69913038 None:intergenic 55.0%
CCTGCACCCTCCAATAAGGT+TGG - chr4_1:69913016-69913035 Msa0568300:three_prime_UTR 55.0%
TGCAGCAGAGGAAGAAGCTC+TGG + chr4_1:69913199-69913218 None:intergenic 55.0%
!! AGAGTGTTGAGGTCGACACC+AGG + chr4_1:69913222-69913241 None:intergenic 55.0%
GTGCAAGGGATACATACCCC+GGG + chr4_1:69914365-69914384 None:intergenic 55.0%
GGTATAGGCAGCACATCTCC+TGG - chr4_1:69915243-69915262 Msa0568300:intron 55.0%
GCTTCTTCCTCTGCTGCACC+TGG - chr4_1:69913201-69913220 Msa0568300:exon 60.0%
! ATTCTGGCTGGCCAGCTTCC+CGG - chr4_1:69914344-69914363 Msa0568300:intron 60.0%
GGATACATACCCCGGGAAGC+TGG + chr4_1:69914358-69914377 None:intergenic 60.0%
TGACTGGCAGGCCATTTGGC+TGG - chr4_1:69914690-69914709 Msa0568300:intron 60.0%
TGGCAGGCCATTTGGCTGGT+AGG - chr4_1:69914694-69914713 Msa0568300:intron 60.0%
!! ATGGCTGGACTGGCAGCAGA+AGG - chr4_1:69915975-69915994 Msa0568300:intron 60.0%
GTCGACACCAGGTGCAGCAG+AGG + chr4_1:69913211-69913230 None:intergenic 65.0%
! TTCTGGCTGGCCAGCTTCCC+GGG - chr4_1:69914345-69914364 Msa0568300:intron 65.0%
! TCTGGCTGGCCAGCTTCCCG+GGG - chr4_1:69914346-69914365 Msa0568300:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 69912974 69916702 69912974 ID=Msa0568300;Name=Msa0568300
chr4_1 mRNA 69912974 69916702 69912974 ID=Msa0568300-mRNA-1;Parent=Msa0568300;Name=Msa0568300-mRNA-1;_AED=0.07;_eAED=0.07;_QI=107|1|1|1|1|1|10|240|330
chr4_1 exon 69912974 69913333 69912974 ID=Msa0568300-mRNA-1:exon:23465;Parent=Msa0568300-mRNA-1
chr4_1 exon 69913461 69913526 69913461 ID=Msa0568300-mRNA-1:exon:23464;Parent=Msa0568300-mRNA-1
chr4_1 exon 69913627 69913717 69913627 ID=Msa0568300-mRNA-1:exon:23463;Parent=Msa0568300-mRNA-1
chr4_1 exon 69913985 69914114 69913985 ID=Msa0568300-mRNA-1:exon:23462;Parent=Msa0568300-mRNA-1
chr4_1 exon 69914237 69914325 69914237 ID=Msa0568300-mRNA-1:exon:23461;Parent=Msa0568300-mRNA-1
chr4_1 exon 69914411 69914487 69914411 ID=Msa0568300-mRNA-1:exon:23460;Parent=Msa0568300-mRNA-1
chr4_1 exon 69915309 69915377 69915309 ID=Msa0568300-mRNA-1:exon:23459;Parent=Msa0568300-mRNA-1
chr4_1 exon 69915501 69915575 69915501 ID=Msa0568300-mRNA-1:exon:23458;Parent=Msa0568300-mRNA-1
chr4_1 exon 69916076 69916171 69916076 ID=Msa0568300-mRNA-1:exon:23457;Parent=Msa0568300-mRNA-1
chr4_1 exon 69916416 69916702 69916416 ID=Msa0568300-mRNA-1:exon:23456;Parent=Msa0568300-mRNA-1
chr4_1 five_prime_UTR 69916596 69916702 69916596 ID=Msa0568300-mRNA-1:five_prime_utr;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69916416 69916595 69916416 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69916076 69916171 69916076 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69915501 69915575 69915501 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69915309 69915377 69915309 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69914411 69914487 69914411 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69914237 69914325 69914237 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69913985 69914114 69913985 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69913627 69913717 69913627 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69913461 69913526 69913461 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 CDS 69913214 69913333 69913214 ID=Msa0568300-mRNA-1:cds;Parent=Msa0568300-mRNA-1
chr4_1 three_prime_UTR 69912974 69913213 69912974 ID=Msa0568300-mRNA-1:three_prime_utr;Parent=Msa0568300-mRNA-1
Gene Sequence

>Msa0568300

ATGTTGATCACAACCATGCCTTACTCATCATCTTTACCCAAACCATATTATAATTTTTACCATAATCATCATCACCACCAAACATGCTTCAACATCAACCTCCCTAAATTCACAACCAGAGCTTCTTCCTCTGCTGCACCTGGTGTCGACCTCAACACTCTTGATTCTGCCATTGCCAAGAAAGACAGCAATGCAGTTAAAGAGGCACTTGATCAACTGAGTGAAATTGGTTGGGCCAAGAAATGGAGTTCTCAGCCATATGTTTCACGTCGTACGACATCACTTCGAGAGCTGACAACTTTAGGGATTAAAAATGCGGAGAACCTTGCAATTCCTAGTGTCAGAAATGATGCAGCTTTTCTCTTTACTGTGGCTGGAACAACTGGATTCTTGGGTATTCTGGCTGGCCAGCTTCCCGGGGATTGGGGCTTCTTTGTACCATACTTGATTGGGAGTATTTCCTTAGTGGTATTGGGTATAGGCAGCACATCTCCTGGGCTTCTCCAAGCAGCTATTAGCAGCTTTTCAGTTGTTTTTCCTGATTATCAAGAAAGGATTGCTAGACATGAAGCAGCCCACTTTTTGATTGCTTATCTGCTTGGCTTACCCATTTTGGGATATTCACTGGATATTGGAAAAGAGCATGTCAATCTCATTGATGATAGGCTTGAAAAGCTTCTCTATAGTGGTCAGCTTGATGCTAAGGAGATAGATAGATTGGCTGTTGTATCAATGGCTGGACTGGCAGCAGAAGGTTTAACATATGACAAGGTTGTTGGTCAATCTGCTGATCTTTTCACTCTCCAGAGGTTTATAAACAGAACCAAACCACAACTCAGCAAAGATCAGCAACAAAATCTCACTAGATGGGCAGTTTTGTTCGCTGCTTCTCTATTGAAAAACAACAAGTCGATCCATGAAGCCTTAATGGCATCGATGGCAAAGAAGGCAAGTGTACTCGAGTGCATTCAAACAATCGAAAGTGAATCATAG

Protein sequence

>Msa0568300

MLITTMPYSSSLPKPYYNFYHNHHHHQTCFNINLPKFTTRASSSAAPGVDLNTLDSAIAKKDSNAVKEALDQLSEIGWAKKWSSQPYVSRRTTSLRELTTLGIKNAENLAIPSVRNDAAFLFTVAGTTGFLGILAGQLPGDWGFFVPYLIGSISLVVLGIGSTSPGLLQAAISSFSVVFPDYQERIARHEAAHFLIAYLLGLPILGYSLDIGKEHVNLIDDRLEKLLYSGQLDAKEIDRLAVVSMAGLAAEGLTYDKVVGQSADLFTLQRFINRTKPQLSKDQQQNLTRWAVLFAASLLKNNKSIHEALMASMAKKASVLECIQTIESES*