AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0733240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733240 MtrunA17_Chr5g0428451 98.502 534 8 0 1 534 1 534 0.0 1085
Msa0733240 MtrunA17_Chr3g0129101 28.642 405 268 8 127 519 206 601 7.32e-47 174
Msa0733240 MtrunA17_Chr8g0382921 28.218 404 271 8 127 519 197 592 8.09e-46 171
Msa0733240 MtrunA17_Chr1g0148121 26.535 456 301 5 66 519 76 499 1.33e-39 152
Msa0733240 MtrunA17_Chr4g0057941 31.660 259 158 5 135 383 78 327 9.82e-39 147
Msa0733240 MtrunA17_Chr4g0012061 25.445 393 262 4 128 518 155 518 2.12e-37 146
Msa0733240 MtrunA17_Chr6g0465161 29.299 314 199 5 128 436 132 427 9.39e-35 139
Msa0733240 MtrunA17_Chr1g0199921 26.368 402 237 8 126 505 201 565 9.16e-33 133
Msa0733240 MtrunA17_Chr3g0120791 29.392 296 198 4 127 418 203 491 1.16e-32 132
Msa0733240 MtrunA17_Chr1g0169361 25.668 374 247 6 128 501 187 529 1.46e-32 132
Msa0733240 MtrunA17_Chr3g0136721 24.750 400 267 7 128 519 138 511 1.60e-32 132
Msa0733240 MtrunA17_Chr7g0230671 25.954 393 260 4 128 518 143 506 3.87e-32 131
Msa0733240 MtrunA17_Chr5g0433911 32.530 249 158 5 130 377 68 307 9.72e-29 119
Msa0733240 MtrunA17_Chr3g0113361 30.255 314 184 11 119 406 81 385 4.49e-28 117
Msa0733240 MtrunA17_Chr4g0048521 26.257 358 226 9 126 459 216 559 1.82e-23 104
Msa0733240 MtrunA17_Chr1g0147481 25.828 302 200 8 130 417 129 420 1.92e-23 105
Msa0733240 MtrunA17_Chr2g0281061 25.656 343 229 8 126 447 213 550 6.48e-22 99.8
Msa0733240 MtrunA17_Chr8g0360981 23.392 342 224 8 134 447 216 547 1.44e-18 89.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733240 AT5G05200.1 79.065 535 107 4 1 532 1 533 0.0 870
Msa0733240 AT4G24810.4 34.363 259 156 5 135 383 32 286 3.86e-43 156
Msa0733240 AT4G24810.5 34.363 259 156 5 135 383 32 286 4.36e-43 156
Msa0733240 AT5G64940.1 27.901 405 273 9 127 519 221 618 5.25e-43 164
Msa0733240 AT5G64940.2 27.901 405 273 9 127 519 221 618 5.25e-43 164
Msa0733240 AT4G31390.1 28.316 392 255 4 128 519 170 535 4.68e-42 160
Msa0733240 AT4G24810.6 33.977 259 157 5 135 383 32 286 5.89e-42 156
Msa0733240 AT4G24810.1 33.977 259 157 5 135 383 32 286 5.89e-42 156
Msa0733240 AT4G24810.2 34.363 259 156 5 135 383 75 329 1.29e-41 156
Msa0733240 AT4G24810.3 33.459 266 156 6 135 383 32 293 2.03e-39 149
Msa0733240 AT3G24190.1 28.382 377 233 10 128 501 195 537 1.30e-37 148
Msa0733240 AT5G50330.1 30.303 297 185 6 135 417 75 363 2.24e-37 144
Msa0733240 AT3G07700.3 26.044 407 275 5 127 519 192 586 3.39e-36 143
Msa0733240 AT1G79600.1 25.831 391 263 3 128 518 150 513 2.26e-35 141
Msa0733240 AT4G31390.3 27.684 354 230 4 166 519 9 336 4.72e-35 137
Msa0733240 AT3G07700.1 31.164 292 196 3 127 418 192 478 5.12e-35 140
Msa0733240 AT3G07700.2 31.164 292 196 3 127 418 192 478 5.12e-35 140
Msa0733240 AT3G07700.4 31.164 292 196 3 127 418 192 478 5.12e-35 140
Msa0733240 AT1G71810.1 29.167 312 202 6 128 436 123 418 1.58e-33 135
Msa0733240 AT4G31390.2 26.020 392 239 5 128 519 170 510 1.84e-33 135
Msa0733240 AT2G39190.2 27.670 412 250 8 126 519 200 581 3.16e-33 135
Msa0733240 AT5G24970.3 28.173 323 209 4 135 438 147 465 5.59e-32 131
Msa0733240 AT5G24970.2 28.173 323 209 4 135 438 186 504 8.54e-32 130
Msa0733240 AT5G50330.2 26.962 293 184 6 135 417 75 347 7.79e-29 119
Msa0733240 AT5G24970.1 26.647 334 218 5 128 438 133 462 2.20e-28 120
Msa0733240 AT1G65950.2 32.296 257 160 7 130 381 104 351 3.24e-28 117
Msa0733240 AT1G65950.1 31.641 256 163 5 130 381 104 351 1.02e-27 117
Msa0733240 AT2G40090.1 31.716 268 168 8 107 367 71 330 9.51e-25 108
Msa0733240 AT1G61640.3 25.373 335 215 7 128 437 213 537 3.41e-22 100
Msa0733240 AT1G61640.1 25.373 335 215 7 128 437 213 537 3.70e-22 100
Msa0733240 AT1G11390.1 25.740 338 208 9 128 436 216 539 1.60e-21 99.0
Msa0733240 AT5G24810.1 26.087 299 201 9 131 417 104 394 2.03e-19 92.8
Msa0733240 AT1G61640.2 31.325 166 106 3 128 286 213 377 3.44e-17 84.7
Msa0733240 AT2G39190.1 30.488 164 107 4 126 287 200 358 2.78e-13 72.0

Find 142 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCGTCAATGGCGGTTTC+TGG 0.132273 5_1:+46480489 Msa0733240:exon
CTGCAAATATTGAGGCTTTC+AGG 0.155932 5_1:+46483569 Msa0733240:CDS
GTGGAGCTACTTTGTGTTTA+TGG 0.174008 5_1:-46480446 None:intergenic
TCAATATTGCGTAAGGAATT+AGG 0.239316 5_1:+46482535 Msa0733240:CDS
TTCCATAGCCGCCCATGTTT+TGG 0.250868 5_1:-46484353 None:intergenic
TGTAGCACCCATTTGAATTA+AGG 0.251349 5_1:-46484425 None:intergenic
TGTATAGTTGCTTCTTCTAT+TGG 0.261988 5_1:-46485608 None:intergenic
AAACAACCTCCTCAAATATA+AGG 0.267524 5_1:-46481850 None:intergenic
ATCTTACCACATCAAGAAAT+AGG 0.275497 5_1:-46485169 None:intergenic
AGATATAGCAGCTGGATTTC+TGG 0.277222 5_1:-46485111 None:intergenic
GTAAAGATTGTACTGCATTT+AGG 0.289421 5_1:+46485659 Msa0733240:three_prime_UTR
GAGCTCTATCAAAACAATTC+TGG 0.292111 5_1:-46482486 None:intergenic
TTAACCATGCAAAGACTATA+TGG 0.299937 5_1:+46483670 Msa0733240:CDS
GGCATCTTCCTTAATTCAAA+TGG 0.302083 5_1:+46484417 Msa0733240:CDS
GAGGAGGTTGTTTGAACGTC+TGG 0.304018 5_1:+46481860 Msa0733240:CDS
ATCCTGAAGCATGTTCAAAT+TGG 0.305592 5_1:-46485566 None:intergenic
GTTCAGGTTAGTGAATCTTA+TGG 0.306095 5_1:+46485466 Msa0733240:CDS
CAAGGTGTTCAAGCCTTCCT+TGG 0.314462 5_1:+46481174 Msa0733240:CDS
GCAGTTATAAGGCTGGCTTC+TGG 0.315287 5_1:-46483739 None:intergenic
ACTAATATGTCCTCTATTCC+TGG 0.327369 5_1:-46482770 None:intergenic
GGGGCAACCTACATCAAATT+AGG 0.328575 5_1:+46481882 Msa0733240:CDS
GTATATTACATTTAGGTTCA+TGG 0.333875 5_1:+46482698 Msa0733240:intron
GTTCATGGAGCAAGGCTAAA+AGG 0.339319 5_1:+46482713 Msa0733240:CDS
TATTCGTACACACTTTCTAT+TGG 0.340456 5_1:-46482562 None:intergenic
AAGGTGTTCAAGCCTTCCTT+GGG 0.347838 5_1:+46481175 Msa0733240:CDS
ACACATTGAGAGCAGTTATA+AGG 0.355029 5_1:-46483750 None:intergenic
TCCCAATTTGAACATGCTTC+AGG 0.358785 5_1:+46485564 Msa0733240:CDS
AACAACCTCCTCAAATATAA+GGG 0.359068 5_1:-46481849 None:intergenic
CATCGTCAATGGCGGTTTCT+GGG 0.370016 5_1:+46480490 Msa0733240:exon
TAAGGCCTTTGCCAGAGATT+TGG 0.371621 5_1:+46484465 Msa0733240:CDS
TTATGTTGTTGCTCGGATAT+TGG 0.374406 5_1:+46482811 Msa0733240:CDS
TCCTCGGGGTGTTCTTAGAT+TGG 0.376836 5_1:+46481149 Msa0733240:CDS
CAGTTATAAGGCTGGCTTCT+GGG 0.386851 5_1:-46483738 None:intergenic
ATCTGTGGATACTGGTCCTC+GGG 0.393889 5_1:+46481134 Msa0733240:CDS
AGTGACGTCCGACTTATTTC+AGG 0.394305 5_1:-46482845 None:intergenic
GCGGCTATGGAAGTCTTCTT+AGG 0.407523 5_1:+46484364 Msa0733240:CDS
ATTGATTGAATTACCTCAAA+AGG 0.414259 5_1:-46482517 None:intergenic
ATTCAATCTACAGGAATTGT+TGG 0.415268 5_1:+46484319 Msa0733240:intron
AGGAGATATTTAGAAGCAAT+GGG 0.419957 5_1:+46483589 Msa0733240:CDS
TCCCAAAACATGGGCGGCTA+TGG 0.429305 5_1:+46484351 Msa0733240:CDS
TCTTACCACATCAAGAAATA+GGG 0.431652 5_1:-46485168 None:intergenic
AAGCGGAAGCAAGGGGTGTC+GGG 0.433511 5_1:-46482591 None:intergenic
TGAATTACCTCAAAAGGAAC+TGG 0.437045 5_1:-46482511 None:intergenic
ACAGGAGGATGTGGTTATAA+AGG 0.438191 5_1:+46482739 Msa0733240:CDS
TTCTCCTCTCGTCGATTCCA+AGG 0.445895 5_1:+46480651 Msa0733240:CDS
AGGAGGTTGTTTGAACGTCT+GGG 0.446248 5_1:+46481861 Msa0733240:CDS
CAGTCAACAAACTCATCCGC+TGG 0.447440 5_1:+46481792 Msa0733240:intron
TTACTGACCTAGACTCAATT+AGG 0.449505 5_1:+46483701 Msa0733240:CDS
CAGGAGATATTTAGAAGCAA+TGG 0.452079 5_1:+46483588 Msa0733240:CDS
GACCAGTATCCACAGATGTC+TGG 0.456037 5_1:-46481128 None:intergenic
GGTCTTAAAACCAGGAATAG+AGG 0.464959 5_1:+46482760 Msa0733240:CDS
TCCTGAAGCATGTTCAAATT+GGG 0.465530 5_1:-46485565 None:intergenic
CTTCTACGTGATGGCCGTAT+CGG 0.467669 5_1:+46483925 Msa0733240:CDS
GCATCTTCCTTAATTCAAAT+GGG 0.467989 5_1:+46484418 Msa0733240:CDS
GTCCAGACATCTGTGGATAC+TGG 0.468329 5_1:+46481126 Msa0733240:CDS
TGACCGGTACACACGGTTGT+TGG 0.469311 5_1:+46485540 Msa0733240:CDS
TTCTCTCAACTCATCGTCAA+TGG 0.478201 5_1:+46480479 Msa0733240:exon
TGAAATAAGTCGGACGTCAC+TGG 0.480760 5_1:+46482847 Msa0733240:CDS
ACAATATCCTCTACAAGCTT+AGG 0.484332 5_1:-46481105 None:intergenic
CAAGGAGGCTGCAAATATTG+AGG 0.488753 5_1:+46483561 Msa0733240:CDS
GAAGCGGAAGCAAGGGGTGT+CGG 0.493141 5_1:-46482592 None:intergenic
TGCTATAGAAGCGGAAGCAA+GGG 0.494091 5_1:-46482599 None:intergenic
TGCTCGTTATGCTCAAACTC+AGG 0.499390 5_1:+46480623 Msa0733240:CDS
TGCTTCCGCTTCTATAGCAC+AGG 0.501296 5_1:+46482603 Msa0733240:CDS
GAACACTTTCTCCAAATCTC+TGG 0.501529 5_1:-46484476 None:intergenic
GGAATCGACGAGAGGAGAAA+AGG 0.510584 5_1:-46480647 None:intergenic
TTCATGCAGATGTGCATGCT+GGG 0.511717 5_1:+46483893 Msa0733240:CDS
GCTTCTTCTATTGGAAGCAA+TGG 0.512791 5_1:-46485599 None:intergenic
TAGAAGCAATGGGGCTCACT+AGG 0.515739 5_1:+46483599 Msa0733240:CDS
TTTCATGCAGATGTGCATGC+TGG 0.515941 5_1:+46483892 Msa0733240:CDS
AAAACAAAATCGATGAAATG+AGG 0.516916 5_1:+46480405 Msa0733240:five_prime_UTR
CATCTGTGGATACTGGTCCT+CGG 0.520055 5_1:+46481133 Msa0733240:CDS
CTAATGACCTAATTGAGTCT+AGG 0.524958 5_1:-46483708 None:intergenic
GTGCTATAGAAGCGGAAGCA+AGG 0.525817 5_1:-46482600 None:intergenic
TTGACTTAGAATGAAGATTG+AGG 0.526856 5_1:-46480584 None:intergenic
CATCGATGATTATGACTCAA+TGG 0.527806 5_1:+46484396 Msa0733240:CDS
ATTGAGTCTAGGTCAGTAAG+AGG 0.528195 5_1:-46483697 None:intergenic
AAAAGGCTCACAGGAGGATG+TGG 0.532003 5_1:+46482730 Msa0733240:CDS
ACATTAGCAGATATAGCAGC+TGG 0.532569 5_1:-46485119 None:intergenic
GTCGTATATCTCCCAAAACA+TGG 0.534399 5_1:+46484341 Msa0733240:CDS
ACATTTAGGTTCATGGAGCA+AGG 0.536459 5_1:+46482705 Msa0733240:intron
ATGTGCATGCTGGGAATCTG+TGG 0.537590 5_1:+46483902 Msa0733240:CDS
GAAAGTGTTCTCATCAATGA+AGG 0.538627 5_1:+46484489 Msa0733240:CDS
TACCTGTCCTAATTTGATGT+AGG 0.539725 5_1:-46481889 None:intergenic
GGTCGGTCAAGAGTGGTTAA+CGG 0.543307 5_1:+46481197 Msa0733240:CDS
AACTCTTGTACATACTCAGC+TGG 0.546332 5_1:-46482463 None:intergenic
TGAACATGCTTCAGGATCAG+AGG 0.547988 5_1:+46485572 Msa0733240:CDS
AAACAACGATGTTAATGCTA+AGG 0.548227 5_1:+46484447 Msa0733240:CDS
GTTCAAGCCTTCCTTGGGGT+CGG 0.552457 5_1:+46481180 Msa0733240:CDS
ATAGTTGTAGCAACTAGAAG+TGG 0.552586 5_1:+46485083 Msa0733240:CDS
AATTCAATCAATATTGCGTA+AGG 0.555432 5_1:+46482528 Msa0733240:CDS
GGAGGTTGTTTGAACGTCTG+GGG 0.556010 5_1:+46481862 Msa0733240:CDS
ATTGAGAGCAGTTATAAGGC+TGG 0.557275 5_1:-46483746 None:intergenic
AAACAAAATCGATGAAATGA+GGG 0.558632 5_1:+46480406 Msa0733240:five_prime_UTR
AGCAAGGCTAAAAGGCTCAC+AGG 0.563810 5_1:+46482721 Msa0733240:CDS
CTCTTGACCGACCCCAAGGA+AGG 0.568780 5_1:-46481187 None:intergenic
TACTCAGCTGGAAATAGTGT+TGG 0.570113 5_1:-46482451 None:intergenic
CGTATCGGATTTCTTGACTT+CGG 0.570824 5_1:+46483940 Msa0733240:CDS
AACCTACATCAAATTAGGAC+AGG 0.579875 5_1:+46481887 Msa0733240:CDS
TGATTGTGATGATGAATCAA+TGG 0.583878 5_1:-46480534 None:intergenic
GTGGTTAACGGATGTATCCA+AGG 0.584386 5_1:+46481209 Msa0733240:CDS
ATATACCTGTGCTATAGAAG+CGG 0.584654 5_1:-46482608 None:intergenic
TCCTTGGGGTCGGTCAAGAG+TGG 0.585588 5_1:+46481190 Msa0733240:CDS
TTTCTCCAAATCTCTGGCAA+AGG 0.590427 5_1:-46484470 None:intergenic
GAGCCAACAACCGTGTGTAC+CGG 0.591221 5_1:-46485543 None:intergenic
AACACCATATAGTCTTTGCA+TGG 0.591946 5_1:-46483674 None:intergenic
ATGAAGATTGAGGTTCGTGA+AGG 0.592071 5_1:-46480574 None:intergenic
GAGGTTGTTTGAACGTCTGG+GGG 0.598966 5_1:+46481863 Msa0733240:CDS
GGTGTTCTTAGATTGGCTCA+AGG 0.604256 5_1:+46481156 Msa0733240:CDS
ACAACCTCCTCAAATATAAG+GGG 0.605774 5_1:-46481848 None:intergenic
TCTCAACTCATCGTCAATGG+CGG 0.606936 5_1:+46480482 Msa0733240:exon
ACCACTCTTGACCGACCCCA+AGG 0.616609 5_1:-46481191 None:intergenic
AAAGCTACCTAAGCTTGTAG+AGG 0.617471 5_1:+46481098 Msa0733240:CDS
TCTGGGTTGAGAAGCAGCTG+CGG 0.618544 5_1:+46480507 Msa0733240:CDS
CATTGAGTCATAATCATCGA+TGG 0.624222 5_1:-46484395 None:intergenic
GTTATAAAGGTCTTAAAACC+AGG 0.626989 5_1:+46482752 Msa0733240:CDS
CGAAGTCAAGAAATCCGATA+CGG 0.628455 5_1:-46483939 None:intergenic
AGTCAACAAACTCATCCGCT+GGG 0.635196 5_1:+46481793 Msa0733240:intron
TTACCGACAGATATGCAGCT+TGG 0.635520 5_1:+46481816 Msa0733240:CDS
AGACCAAGCTGCATATCTGT+CGG 0.639978 5_1:-46481819 None:intergenic
GAATGCCCTATTTCTTGATG+TGG 0.639985 5_1:+46485163 Msa0733240:CDS
GCTATAGAAGCGGAAGCAAG+GGG 0.641052 5_1:-46482598 None:intergenic
TTATAACTGCTCTCAATGTG+TGG 0.642384 5_1:+46483752 Msa0733240:CDS
AATCTGTGGCTTCTACGTGA+TGG 0.642685 5_1:+46483916 Msa0733240:CDS
AGAAGAAGCGCAAATTCTCG+AGG 0.647530 5_1:-46485499 None:intergenic
GGATATTGTCCAGACATCTG+TGG 0.651728 5_1:+46481119 Msa0733240:CDS
CTAATGTAGTTGTTGATGAG+AGG 0.654433 5_1:+46485135 Msa0733240:CDS
AGCTGGAAATAGTGTTGGTG+CGG 0.664408 5_1:-46482446 None:intergenic
ATTACCTCAAAAGGAACTGG+AGG 0.667892 5_1:-46482508 None:intergenic
TGTATCAAAACTGCAGTACG+CGG 0.673275 5_1:+46483641 Msa0733240:CDS
TCGTATATCTCCCAAAACAT+GGG 0.675246 5_1:+46484342 Msa0733240:CDS
GAAACCTTGGAATCGACGAG+AGG 0.676580 5_1:-46480655 None:intergenic
TTGAGAGAAGAGTAGTTACG+TGG 0.678817 5_1:-46480465 None:intergenic
AAGGCTAAAAGGCTCACAGG+AGG 0.681729 5_1:+46482724 Msa0733240:CDS
CAACCTCCTCAAATATAAGG+GGG 0.689753 5_1:-46481847 None:intergenic
TCAGACTTACAGGACAACAA+TGG 0.694379 5_1:-46485746 None:intergenic
AGGTGTTCAAGCCTTCCTTG+GGG 0.700325 5_1:+46481176 Msa0733240:CDS
TATATCTCCCAAAACATGGG+CGG 0.700368 5_1:+46484345 Msa0733240:CDS
TCTGTGGATACTGGTCCTCG+GGG 0.701769 5_1:+46481135 Msa0733240:CDS
CATATCTGTCGGTAACCCAG+CGG 0.703976 5_1:-46481808 None:intergenic
GGAGATATTTAGAAGCAATG+GGG 0.716924 5_1:+46483590 Msa0733240:CDS
GCCAATCTAAGAACACCCCG+AGG 0.765060 5_1:-46481150 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTGAATGTAATCATAT+GGG + chr5_1:46480788-46480807 Msa0733240:intron 15.0%
!!! ACATTTATTTTTATCTCAAT+TGG - chr5_1:46480993-46481012 None:intergenic 15.0%
!! TTTGTGATTGTTAAAATTAT+TGG + chr5_1:46481943-46481962 Msa0733240:intron 15.0%
!! TTGTGATTGTTAAAATTATT+GGG + chr5_1:46481944-46481963 Msa0733240:intron 15.0%
!! AATTGTTGTATATTACATTT+AGG + chr5_1:46482691-46482710 Msa0733240:intron 15.0%
!! AGAAAATGAATTTAGTAAAA+GGG - chr5_1:46483016-46483035 None:intergenic 15.0%
!! AAGAAAATGAATTTAGTAAA+AGG - chr5_1:46483017-46483036 None:intergenic 15.0%
!!! TCAAAATTGTACATTTTATT+TGG + chr5_1:46484057-46484076 Msa0733240:intron 15.0%
!! AAATATTTATCTACAATACA+TGG - chr5_1:46484946-46484965 None:intergenic 15.0%
!!! TTTTTCTTTCTCTATTTGTT+CGG - chr5_1:46480387-46480406 None:intergenic 20.0%
!! CATAATTGAATGTAATCATA+TGG + chr5_1:46480787-46480806 Msa0733240:intron 20.0%
!!! ATTTTTGAAAAATGAGTATC+TGG - chr5_1:46480872-46480891 None:intergenic 20.0%
!! AAGGAATATTTGATAAACAT+TGG + chr5_1:46480959-46480978 Msa0733240:intron 20.0%
!!! AAAAATAAATGTTTTCACTG+TGG + chr5_1:46481001-46481020 Msa0733240:intron 20.0%
!!! AGGATTACTTTAAAATGTAT+AGG + chr5_1:46481579-46481598 Msa0733240:intron 20.0%
!! TCATTGTCAAAAAAAACAAA+AGG - chr5_1:46481638-46481657 None:intergenic 20.0%
!!! AAATTATTGGGTTTTAGATT+AGG + chr5_1:46481956-46481975 Msa0733240:intron 20.0%
!!! ACATTTTATTCAAATTACTG+TGG + chr5_1:46482658-46482677 Msa0733240:intron 20.0%
!! GATACATTATCATGTTAAAA+GGG - chr5_1:46483822-46483841 None:intergenic 20.0%
!! AGATACATTATCATGTTAAA+AGG - chr5_1:46483823-46483842 None:intergenic 20.0%
!! TAAAACAAAATTCAATCTAC+AGG + chr5_1:46484310-46484329 Msa0733240:intron 20.0%
! AAAACAAAATCGATGAAATG+AGG + chr5_1:46480405-46480424 Msa0733240:five_prime_UTR 25.0%
! AAACAAAATCGATGAAATGA+GGG + chr5_1:46480406-46480425 Msa0733240:five_prime_UTR 25.0%
! TTTAAATTGTTGTGCTGAAA+TGG + chr5_1:46481029-46481048 Msa0733240:intron 25.0%
! AATGATTCAAAAATGGTCAT+GGG - chr5_1:46481384-46481403 None:intergenic 25.0%
!! CGACAATATTTTGTACTAAA+CGG - chr5_1:46481483-46481502 None:intergenic 25.0%
! TACAAAATATTGTCGTATAG+CGG + chr5_1:46481488-46481507 Msa0733240:intron 25.0%
! TGTCAAAAAAAACAAAAGGT+TGG - chr5_1:46481634-46481653 None:intergenic 25.0%
! AACACAAACTACTATTCAAA+AGG - chr5_1:46481691-46481710 None:intergenic 25.0%
!!! TCTCAGCATATATTTTTTGT+TGG + chr5_1:46481719-46481738 Msa0733240:intron 25.0%
! ATGACCTCAAATTATGATTA+TGG + chr5_1:46481999-46482018 Msa0733240:intron 25.0%
! GAAACCATAATCATAATTTG+AGG - chr5_1:46482006-46482025 None:intergenic 25.0%
! TTTAGTATTAGTTCGAATGA+GGG - chr5_1:46482051-46482070 None:intergenic 25.0%
!!! TATATTCTGCAGTTTTTAGT+TGG + chr5_1:46482299-46482318 Msa0733240:intron 25.0%
! AGAAAAACCAAAATTACCAT+TGG - chr5_1:46482409-46482428 None:intergenic 25.0%
! ATTGATTGAATTACCTCAAA+AGG - chr5_1:46482520-46482539 None:intergenic 25.0%
! AATTCAATCAATATTGCGTA+AGG + chr5_1:46482528-46482547 Msa0733240:CDS 25.0%
! ATGTTATAAAAGAGAAAGAC+AGG - chr5_1:46482642-46482661 None:intergenic 25.0%
!! GTATATTACATTTAGGTTCA+TGG + chr5_1:46482698-46482717 Msa0733240:intron 25.0%
!!! ATTTTGTTTATGTTGTTGCT+CGG + chr5_1:46482804-46482823 Msa0733240:CDS 25.0%
!! TTTTGAATCCTGAAATAAGT+CGG + chr5_1:46482837-46482856 Msa0733240:CDS 25.0%
!! TATTTTCATATTGTAGTCGT+AGG - chr5_1:46482919-46482938 None:intergenic 25.0%
! AACATAGTTAAAAATTTCCC+TGG - chr5_1:46482969-46482988 None:intergenic 25.0%
! GTAATATTGAGTCATGTATT+AGG + chr5_1:46483151-46483170 Msa0733240:intron 25.0%
! AAGAGAGATTTAGAAGTTAA+TGG - chr5_1:46483193-46483212 None:intergenic 25.0%
! CAATCTAATAAAAAGGTAGA+GGG - chr5_1:46483246-46483265 None:intergenic 25.0%
! ACAATCTAATAAAAAGGTAG+AGG - chr5_1:46483247-46483266 None:intergenic 25.0%
! CTATCATTGAAATGAAACAA+AGG + chr5_1:46483356-46483375 Msa0733240:intron 25.0%
! ATTATCATGTTAAAAGGGAA+AGG - chr5_1:46483817-46483836 None:intergenic 25.0%
! TTGATATAAAATATTGCTGC+AGG + chr5_1:46483842-46483861 Msa0733240:intron 25.0%
!!! AATGTACAATTTTGAAACCT+TGG - chr5_1:46484052-46484071 None:intergenic 25.0%
!! TTAAGTGTCTTGCTAATTTT+TGG + chr5_1:46484581-46484600 Msa0733240:intron 25.0%
! TAAATATTTCCATCATTGAG+TGG + chr5_1:46484957-46484976 Msa0733240:intron 25.0%
!! TCTTATTTGTCAAAACAGTA+AGG - chr5_1:46485278-46485297 None:intergenic 25.0%
! TGATTGTGATGATGAATCAA+TGG - chr5_1:46480537-46480556 None:intergenic 30.0%
TTGACTTAGAATGAAGATTG+AGG - chr5_1:46480587-46480606 None:intergenic 30.0%
! GAATGCATAGAGAAAGTATA+AGG - chr5_1:46480692-46480711 None:intergenic 30.0%
ATGCTATATGTTTACTTTCC+AGG + chr5_1:46481241-46481260 Msa0733240:intron 30.0%
ATAAAATGTAAAGTCATGCC+TGG - chr5_1:46481262-46481281 None:intergenic 30.0%
ATATTCTCTCATTGTTGAGA+AGG - chr5_1:46481343-46481362 None:intergenic 30.0%
CAATGATTCAAAAATGGTCA+TGG - chr5_1:46481385-46481404 None:intergenic 30.0%
!! CATGACCATTTTTGAATCAT+TGG + chr5_1:46481383-46481402 Msa0733240:intron 30.0%
!! ACCATTTTTGAATCATTGGT+TGG + chr5_1:46481387-46481406 Msa0733240:intron 30.0%
ACCAACCAATGATTCAAAAA+TGG - chr5_1:46481391-46481410 None:intergenic 30.0%
ACTACTATTCAAAAGGAATC+AGG - chr5_1:46481684-46481703 None:intergenic 30.0%
AACAACCTCCTCAAATATAA+GGG - chr5_1:46481852-46481871 None:intergenic 30.0%
AAACAACCTCCTCAAATATA+AGG - chr5_1:46481853-46481872 None:intergenic 30.0%
ATCACAAAATACAAGCAAAG+AGG - chr5_1:46481931-46481950 None:intergenic 30.0%
!!! TTATTGGGTTTTAGATTAGG+AGG + chr5_1:46481959-46481978 Msa0733240:intron 30.0%
GTTTAGTATTAGTTCGAATG+AGG - chr5_1:46482052-46482071 None:intergenic 30.0%
TTCCTCAGTAAATTAGGATT+AGG - chr5_1:46482076-46482095 None:intergenic 30.0%
TTATCACTTTGACACTATGA+TGG + chr5_1:46482178-46482197 Msa0733240:intron 30.0%
TATCACTTTGACACTATGAT+GGG + chr5_1:46482179-46482198 Msa0733240:intron 30.0%
GATGAGTTATAAAACTCAAG+TGG - chr5_1:46482362-46482381 None:intergenic 30.0%
CAAAATTACCATTGGTACAA+GGG - chr5_1:46482401-46482420 None:intergenic 30.0%
!!! TGGTAATTTTGGTTTTTCTC+TGG + chr5_1:46482410-46482429 Msa0733240:intron 30.0%
TCAATATTGCGTAAGGAATT+AGG + chr5_1:46482535-46482554 Msa0733240:CDS 30.0%
TATTCGTACACACTTTCTAT+TGG - chr5_1:46482565-46482584 None:intergenic 30.0%
GTTATAAAGGTCTTAAAACC+AGG + chr5_1:46482752-46482771 Msa0733240:CDS 30.0%
AGTAAAAGGGACAATAACAA+AGG - chr5_1:46483003-46483022 None:intergenic 30.0%
TTAATGGTCTATCTATCTCT+AGG - chr5_1:46483177-46483196 None:intergenic 30.0%
AACTTCTAAATCTCTCTTGA+CGG + chr5_1:46483195-46483214 Msa0733240:intron 30.0%
TGGAGGACAATCTAATAAAA+AGG - chr5_1:46483253-46483272 None:intergenic 30.0%
TTATTAGATTGTCCTCCATT+TGG + chr5_1:46483255-46483274 Msa0733240:intron 30.0%
TATTAGATTGTCCTCCATTT+GGG + chr5_1:46483256-46483275 Msa0733240:intron 30.0%
AAGCTCTTTGTTAGCTATTA+TGG + chr5_1:46483391-46483410 Msa0733240:intron 30.0%
AGCTCTTTGTTAGCTATTAT+GGG + chr5_1:46483392-46483411 Msa0733240:intron 30.0%
! GAAGCATTTATGTAAGTGTT+TGG - chr5_1:46483457-46483476 None:intergenic 30.0%
GTAAACTCGTGTTATAAGAA+AGG - chr5_1:46483479-46483498 None:intergenic 30.0%
!! TGAAGAAGTTGACTTTTACA+AGG + chr5_1:46483543-46483562 Msa0733240:CDS 30.0%
AGGAGATATTTAGAAGCAAT+GGG + chr5_1:46483589-46483608 Msa0733240:CDS 30.0%
TTAACCATGCAAAGACTATA+TGG + chr5_1:46483670-46483689 Msa0733240:CDS 30.0%
ATAAAATATTGCTGCAGGTT+TGG + chr5_1:46483847-46483866 Msa0733240:intron 30.0%
!!! TGCTTTTTCTTCTTTTTGCA+TGG + chr5_1:46483965-46483984 Msa0733240:intron 30.0%
CAAAACAATATGCTGATAAC+TGG - chr5_1:46484107-46484126 None:intergenic 30.0%
!! ATCAGCATATTGTTTTGCTA+TGG + chr5_1:46484110-46484129 Msa0733240:intron 30.0%
ATTCAATCTACAGGAATTGT+TGG + chr5_1:46484319-46484338 Msa0733240:intron 30.0%
GCATCTTCCTTAATTCAAAT+GGG + chr5_1:46484418-46484437 Msa0733240:CDS 30.0%
AAACAACGATGTTAATGCTA+AGG + chr5_1:46484447-46484466 Msa0733240:CDS 30.0%
!!! AGAAACAAACTTTTTGAGTC+AGG - chr5_1:46484898-46484917 None:intergenic 30.0%
! TAAATTGATCCCTACTGATT+AGG + chr5_1:46485000-46485019 Msa0733240:intron 30.0%
TCTTACCACATCAAGAAATA+GGG - chr5_1:46485171-46485190 None:intergenic 30.0%
ATCTTACCACATCAAGAAAT+AGG - chr5_1:46485172-46485191 None:intergenic 30.0%
TAAAAGCAACCTTAGCATTT+CGG - chr5_1:46485212-46485231 None:intergenic 30.0%
GTCATCTATATATATTCCAC+AGG + chr5_1:46485444-46485463 Msa0733240:intron 30.0%
TATATATATTCCACAGGTTC+AGG + chr5_1:46485450-46485469 Msa0733240:intron 30.0%
TGTATAGTTGCTTCTTCTAT+TGG - chr5_1:46485611-46485630 None:intergenic 30.0%
GTAAAGATTGTACTGCATTT+AGG + chr5_1:46485659-46485678 Msa0733240:three_prime_UTR 30.0%
! GAGAAAGTATAAGGAGTTGA+AGG - chr5_1:46480683-46480702 None:intergenic 35.0%
ACAATATCCTCTACAAGCTT+AGG - chr5_1:46481108-46481127 None:intergenic 35.0%
GTAGGTATGCATCTAATCTA+TGG - chr5_1:46481321-46481340 None:intergenic 35.0%
! AATGGTCATGGGCTATTTAA+CGG - chr5_1:46481373-46481392 None:intergenic 35.0%
!! GCAAGAGTGCTAAATAATTC+TGG - chr5_1:46481763-46481782 None:intergenic 35.0%
ACAACCTCCTCAAATATAAG+GGG - chr5_1:46481851-46481870 None:intergenic 35.0%
AACCTACATCAAATTAGGAC+AGG + chr5_1:46481887-46481906 Msa0733240:CDS 35.0%
TACCTGTCCTAATTTGATGT+AGG - chr5_1:46481892-46481911 None:intergenic 35.0%
CAAAATACAAGCAAAGAGGA+GGG - chr5_1:46481927-46481946 None:intergenic 35.0%
ACAAAATACAAGCAAAGAGG+AGG - chr5_1:46481928-46481947 None:intergenic 35.0%
CTCCTAATCCTAATTTACTG+AGG + chr5_1:46482071-46482090 Msa0733240:intron 35.0%
CTTCGTTTCCTCAGTAAATT+AGG - chr5_1:46482082-46482101 None:intergenic 35.0%
TTTACTGAGGAAACGAAGTA+TGG + chr5_1:46482084-46482103 Msa0733240:intron 35.0%
ATCACTTTGACACTATGATG+GGG + chr5_1:46482180-46482199 Msa0733240:intron 35.0%
CCAAAATTACCATTGGTACA+AGG - chr5_1:46482402-46482421 None:intergenic 35.0%
! CCTTGTACCAATGGTAATTT+TGG + chr5_1:46482399-46482418 Msa0733240:intron 35.0%
GAGCTCTATCAAAACAATTC+TGG - chr5_1:46482489-46482508 None:intergenic 35.0%
TGAATTACCTCAAAAGGAAC+TGG - chr5_1:46482514-46482533 None:intergenic 35.0%
ATATACCTGTGCTATAGAAG+CGG - chr5_1:46482611-46482630 None:intergenic 35.0%
ACTAATATGTCCTCTATTCC+TGG - chr5_1:46482773-46482792 None:intergenic 35.0%
TTATGTTGTTGCTCGGATAT+TGG + chr5_1:46482811-46482830 Msa0733240:CDS 35.0%
GACACTTACTGATACATACA+TGG + chr5_1:46482885-46482904 Msa0733240:intron 35.0%
!! TCTCTTGACGGTTTTATCAA+TGG + chr5_1:46483207-46483226 Msa0733240:intron 35.0%
ATTAGATTGTCCTCCATTTG+GGG + chr5_1:46483257-46483276 Msa0733240:intron 35.0%
TAGCTAACAAAGAGCTTATG+TGG - chr5_1:46483388-46483407 None:intergenic 35.0%
GCTCTTTGTTAGCTATTATG+GGG + chr5_1:46483393-46483412 Msa0733240:intron 35.0%
CTCTTTGTTAGCTATTATGG+GGG + chr5_1:46483394-46483413 Msa0733240:intron 35.0%
TCTTTGTTAGCTATTATGGG+GGG + chr5_1:46483395-46483414 Msa0733240:intron 35.0%
AACACGAGTTTACCTTTAGT+AGG + chr5_1:46483486-46483505 Msa0733240:intron 35.0%
TGACAATACCAACCTACTAA+AGG - chr5_1:46483501-46483520 None:intergenic 35.0%
!! AGAAGTTGACTTTTACAAGG+AGG + chr5_1:46483546-46483565 Msa0733240:CDS 35.0%
CAGGAGATATTTAGAAGCAA+TGG + chr5_1:46483588-46483607 Msa0733240:CDS 35.0%
GGAGATATTTAGAAGCAATG+GGG + chr5_1:46483590-46483609 Msa0733240:CDS 35.0%
!! CTGCAGTTTTGATACACTTT+TGG - chr5_1:46483637-46483656 None:intergenic 35.0%
AACACCATATAGTCTTTGCA+TGG - chr5_1:46483677-46483696 None:intergenic 35.0%
TTACTGACCTAGACTCAATT+AGG + chr5_1:46483701-46483720 Msa0733240:CDS 35.0%
CTAATGACCTAATTGAGTCT+AGG - chr5_1:46483711-46483730 None:intergenic 35.0%
ACACATTGAGAGCAGTTATA+AGG - chr5_1:46483753-46483772 None:intergenic 35.0%
TTATAACTGCTCTCAATGTG+TGG + chr5_1:46483752-46483771 Msa0733240:CDS 35.0%
! CTTTTTGCATGGTTTACAGT+TGG + chr5_1:46483976-46483995 Msa0733240:intron 35.0%
AACCTTGGAAAGTTAACAGA+TGG - chr5_1:46484037-46484056 None:intergenic 35.0%
AAGGTTGCAAGATGATTTCA+TGG - chr5_1:46484141-46484160 None:intergenic 35.0%
CAAAGCAGAACAGTGATTAA+AGG - chr5_1:46484160-46484179 None:intergenic 35.0%
TCGTATATCTCCCAAAACAT+GGG + chr5_1:46484342-46484361 Msa0733240:CDS 35.0%
CATTGAGTCATAATCATCGA+TGG - chr5_1:46484398-46484417 None:intergenic 35.0%
CATCGATGATTATGACTCAA+TGG + chr5_1:46484396-46484415 Msa0733240:CDS 35.0%
GGCATCTTCCTTAATTCAAA+TGG + chr5_1:46484417-46484436 Msa0733240:CDS 35.0%
TGTAGCACCCATTTGAATTA+AGG - chr5_1:46484428-46484447 None:intergenic 35.0%
!! GAAAGTGTTCTCATCAATGA+AGG + chr5_1:46484489-46484508 Msa0733240:CDS 35.0%
AAGCGAGTTTATGTGTGTTA+TGG - chr5_1:46484523-46484542 None:intergenic 35.0%
ATAGTTGCTCTCAAACTACT+CGG + chr5_1:46484694-46484713 Msa0733240:intron 35.0%
TGCTTAATGACTGATAGAAC+CGG + chr5_1:46484819-46484838 Msa0733240:intron 35.0%
CTAGGTTAGATAAGTAGCAA+GGG + chr5_1:46484844-46484863 Msa0733240:intron 35.0%
TAGGTTAGATAAGTAGCAAG+GGG + chr5_1:46484845-46484864 Msa0733240:intron 35.0%
GAAATTCAACCACTCAATGA+TGG - chr5_1:46484969-46484988 None:intergenic 35.0%
GCAATAACTCCTAATCAGTA+GGG - chr5_1:46485012-46485031 None:intergenic 35.0%
AGCAATAACTCCTAATCAGT+AGG - chr5_1:46485013-46485032 None:intergenic 35.0%
ATAGTTGTAGCAACTAGAAG+TGG + chr5_1:46485083-46485102 Msa0733240:CDS 35.0%
! CTAATGTAGTTGTTGATGAG+AGG + chr5_1:46485135-46485154 Msa0733240:CDS 35.0%
TATACAGCATATGTGACTTG+TGG + chr5_1:46485360-46485379 Msa0733240:intron 35.0%
! GTTCAGGTTAGTGAATCTTA+TGG + chr5_1:46485466-46485485 Msa0733240:CDS 35.0%
TCCTGAAGCATGTTCAAATT+GGG - chr5_1:46485568-46485587 None:intergenic 35.0%
ATCCTGAAGCATGTTCAAAT+TGG - chr5_1:46485569-46485588 None:intergenic 35.0%
! GTGGAGCTACTTTGTGTTTA+TGG - chr5_1:46480449-46480468 None:intergenic 40.0%
TTGAGAGAAGAGTAGTTACG+TGG - chr5_1:46480468-46480487 None:intergenic 40.0%
TTCTCTCAACTCATCGTCAA+TGG + chr5_1:46480479-46480498 Msa0733240:exon 40.0%
ATGAAGATTGAGGTTCGTGA+AGG - chr5_1:46480577-46480596 None:intergenic 40.0%
! ATGTCTTCCATCAGAAGTGT+CGG + chr5_1:46480923-46480942 Msa0733240:intron 40.0%
TGTTGTGCTGAAATGGTTCA+TGG + chr5_1:46481036-46481055 Msa0733240:intron 40.0%
AAAGCTACCTAAGCTTGTAG+AGG + chr5_1:46481098-46481117 Msa0733240:CDS 40.0%
TATAGCATGCCAGTTTACCT+TGG - chr5_1:46481229-46481248 None:intergenic 40.0%
TCTCTCATTGTTGAGAAGGT+AGG - chr5_1:46481339-46481358 None:intergenic 40.0%
AAATAGCAGCTATAGCGTAG+CGG + chr5_1:46481424-46481443 Msa0733240:intron 40.0%
TTTGCGATCGACTACGTTAA+TGG + chr5_1:46481554-46481573 Msa0733240:intron 40.0%
TTGCGATCGACTACGTTAAT+GGG + chr5_1:46481555-46481574 Msa0733240:intron 40.0%
TTCTGTCCCCCTTATATTTG+AGG + chr5_1:46481841-46481860 Msa0733240:CDS 40.0%
CAACCTCCTCAAATATAAGG+GGG - chr5_1:46481850-46481869 None:intergenic 40.0%
!!! TGGGTTTTAGATTAGGAGGA+AGG + chr5_1:46481963-46481982 Msa0733240:intron 40.0%
!!! GGGTTTTAGATTAGGAGGAA+GGG + chr5_1:46481964-46481983 Msa0733240:intron 40.0%
!!! TGTAGGGTTTTGGATAAGGA+AGG + chr5_1:46482204-46482223 Msa0733240:intron 40.0%
TACTCAGCTGGAAATAGTGT+TGG - chr5_1:46482454-46482473 None:intergenic 40.0%
AACTCTTGTACATACTCAGC+TGG - chr5_1:46482466-46482485 None:intergenic 40.0%
ATTACCTCAAAAGGAACTGG+AGG - chr5_1:46482511-46482530 None:intergenic 40.0%
! ACATTTAGGTTCATGGAGCA+AGG + chr5_1:46482705-46482724 Msa0733240:intron 40.0%
ACAGGAGGATGTGGTTATAA+AGG + chr5_1:46482739-46482758 Msa0733240:CDS 40.0%
GGTCTTAAAACCAGGAATAG+AGG + chr5_1:46482760-46482779 Msa0733240:CDS 40.0%
ATATGCCATCTTTCATGACC+AGG + chr5_1:46482948-46482967 Msa0733240:intron 40.0%
TATGCCATCTTTCATGACCA+GGG + chr5_1:46482949-46482968 Msa0733240:intron 40.0%
ATTTCCCTGGTCATGAAAGA+TGG - chr5_1:46482956-46482975 None:intergenic 40.0%
CGAGTTTACCTTTAGTAGGT+TGG + chr5_1:46483490-46483509 Msa0733240:intron 40.0%
CTGCAAATATTGAGGCTTTC+AGG + chr5_1:46483569-46483588 Msa0733240:CDS 40.0%
TGTATCAAAACTGCAGTACG+CGG + chr5_1:46483641-46483660 Msa0733240:CDS 40.0%
ATTGAGTCTAGGTCAGTAAG+AGG - chr5_1:46483700-46483719 None:intergenic 40.0%
ATTGAGAGCAGTTATAAGGC+TGG - chr5_1:46483749-46483768 None:intergenic 40.0%
! TGTTAAAAGGGAAAGGCACA+GGG - chr5_1:46483810-46483829 None:intergenic 40.0%
! ATGTTAAAAGGGAAAGGCAC+AGG - chr5_1:46483811-46483830 None:intergenic 40.0%
CGAAGTCAAGAAATCCGATA+CGG - chr5_1:46483942-46483961 None:intergenic 40.0%
CGTATCGGATTTCTTGACTT+CGG + chr5_1:46483940-46483959 Msa0733240:CDS 40.0%
TGCCATCTGTTAACTTTCCA+AGG + chr5_1:46484032-46484051 Msa0733240:intron 40.0%
GTCGCTGTTTAGAAGACAAA+AGG - chr5_1:46484202-46484221 None:intergenic 40.0%
GTCGTATATCTCCCAAAACA+TGG + chr5_1:46484341-46484360 Msa0733240:CDS 40.0%
TATATCTCCCAAAACATGGG+CGG + chr5_1:46484345-46484364 Msa0733240:CDS 40.0%
TTTCTCCAAATCTCTGGCAA+AGG - chr5_1:46484473-46484492 None:intergenic 40.0%
GAACACTTTCTCCAAATCTC+TGG - chr5_1:46484479-46484498 None:intergenic 40.0%
TTAGTTGCCCTCAAACTACT+CGG + chr5_1:46484626-46484645 Msa0733240:intron 40.0%
CACATTTCCGAGTAGTTTGA+GGG - chr5_1:46484636-46484655 None:intergenic 40.0%
ACACATTTCCGAGTAGTTTG+AGG - chr5_1:46484637-46484656 None:intergenic 40.0%
TGCATTCTGCTTGAATGATC+TGG - chr5_1:46484782-46484801 None:intergenic 40.0%
GCTTAATGACTGATAGAACC+GGG + chr5_1:46484820-46484839 Msa0733240:intron 40.0%
! CCTTGCTACTTATCTAACCT+AGG - chr5_1:46484846-46484865 None:intergenic 40.0%
CCTAGGTTAGATAAGTAGCA+AGG + chr5_1:46484843-46484862 Msa0733240:intron 40.0%
ATCCTAAGTGGTTCATGTTC+TGG + chr5_1:46484871-46484890 Msa0733240:intron 40.0%
AGATATAGCAGCTGGATTTC+TGG - chr5_1:46485114-46485133 None:intergenic 40.0%
ACATTAGCAGATATAGCAGC+TGG - chr5_1:46485122-46485141 None:intergenic 40.0%
! GAATGCCCTATTTCTTGATG+TGG + chr5_1:46485163-46485182 Msa0733240:CDS 40.0%
!!! AGCAGCTCTTGTATTTTGAC+CGG + chr5_1:46485524-46485543 Msa0733240:CDS 40.0%
!!! TGTATTTTGACCGGTACACA+CGG + chr5_1:46485533-46485552 Msa0733240:CDS 40.0%
TCCCAATTTGAACATGCTTC+AGG + chr5_1:46485564-46485583 Msa0733240:CDS 40.0%
GCTTCTTCTATTGGAAGCAA+TGG - chr5_1:46485602-46485621 None:intergenic 40.0%
TCTCAACTCATCGTCAATGG+CGG + chr5_1:46480482-46480501 Msa0733240:exon 45.0%
TGCTCGTTATGCTCAAACTC+AGG + chr5_1:46480623-46480642 Msa0733240:CDS 45.0%
GGAGTTGAAGGAAGAAACCT+TGG - chr5_1:46480671-46480690 None:intergenic 45.0%
ATTCTCGCCAACTAATCCGA+GGG - chr5_1:46480848-46480867 None:intergenic 45.0%
GTCCATGTTGTGTGAGACTT+CGG + chr5_1:46480898-46480917 Msa0733240:intron 45.0%
GGATATTGTCCAGACATCTG+TGG + chr5_1:46481119-46481138 Msa0733240:CDS 45.0%
! GGTGTTCTTAGATTGGCTCA+AGG + chr5_1:46481156-46481175 Msa0733240:CDS 45.0%
! AAGGTGTTCAAGCCTTCCTT+GGG + chr5_1:46481175-46481194 Msa0733240:CDS 45.0%
! GTGGTTAACGGATGTATCCA+AGG + chr5_1:46481209-46481228 Msa0733240:CDS 45.0%
CGGATGTATCCAAGGTAAAC+TGG + chr5_1:46481217-46481236 Msa0733240:intron 45.0%
GATCGACTACGTTAATGGGA+AGG + chr5_1:46481559-46481578 Msa0733240:intron 45.0%
AGTCAACAAACTCATCCGCT+GGG + chr5_1:46481793-46481812 Msa0733240:intron 45.0%
TTACCGACAGATATGCAGCT+TGG + chr5_1:46481816-46481835 Msa0733240:CDS 45.0%
AGACCAAGCTGCATATCTGT+CGG - chr5_1:46481822-46481841 None:intergenic 45.0%
TGTCCCCCTTATATTTGAGG+AGG + chr5_1:46481844-46481863 Msa0733240:CDS 45.0%
AGGAGGTTGTTTGAACGTCT+GGG + chr5_1:46481861-46481880 Msa0733240:CDS 45.0%
GGGGCAACCTACATCAAATT+AGG + chr5_1:46481882-46481901 Msa0733240:CDS 45.0%
AATACAAGCAAAGAGGAGGG+AGG - chr5_1:46481924-46481943 None:intergenic 45.0%
! TGACACTATGATGGGGTTGT+AGG + chr5_1:46482187-46482206 Msa0733240:intron 45.0%
! GACACTATGATGGGGTTGTA+GGG + chr5_1:46482188-46482207 Msa0733240:intron 45.0%
!! ATGATGGGGTTGTAGGGTTT+TGG + chr5_1:46482194-46482213 Msa0733240:intron 45.0%
!!! GGGTTGTAGGGTTTTGGATA+AGG + chr5_1:46482200-46482219 Msa0733240:intron 45.0%
!!! AGGGTTTTGGATAAGGAAGG+AGG + chr5_1:46482207-46482226 Msa0733240:intron 45.0%
!!! GGGTTTTGGATAAGGAAGGA+GGG + chr5_1:46482208-46482227 Msa0733240:intron 45.0%
ATAAGGAAGGAGGGAAGAGA+GGG + chr5_1:46482217-46482236 Msa0733240:intron 45.0%
!! AGCTGGAAATAGTGTTGGTG+CGG - chr5_1:46482449-46482468 None:intergenic 45.0%
TGCTATAGAAGCGGAAGCAA+GGG - chr5_1:46482602-46482621 None:intergenic 45.0%
GTTCATGGAGCAAGGCTAAA+AGG + chr5_1:46482713-46482732 Msa0733240:CDS 45.0%
AGTGACGTCCGACTTATTTC+AGG - chr5_1:46482848-46482867 None:intergenic 45.0%
TGAAATAAGTCGGACGTCAC+TGG + chr5_1:46482847-46482866 Msa0733240:CDS 45.0%
GTCACTGGTATGAGCAACAT+GGG + chr5_1:46482862-46482881 Msa0733240:intron 45.0%
TCACTGGTATGAGCAACATG+GGG + chr5_1:46482863-46482882 Msa0733240:intron 45.0%
TTTACCCAACCATCCCCAAA+TGG - chr5_1:46483273-46483292 None:intergenic 45.0%
TAGCTATTATGGGGGGCTTA+TGG + chr5_1:46483402-46483421 Msa0733240:intron 45.0%
CAAGGAGGCTGCAAATATTG+AGG + chr5_1:46483561-46483580 Msa0733240:CDS 45.0%
!! CAGTTATAAGGCTGGCTTCT+GGG - chr5_1:46483741-46483760 None:intergenic 45.0%
TTTCATGCAGATGTGCATGC+TGG + chr5_1:46483892-46483911 Msa0733240:CDS 45.0%
TTCATGCAGATGTGCATGCT+GGG + chr5_1:46483893-46483912 Msa0733240:CDS 45.0%
AATCTGTGGCTTCTACGTGA+TGG + chr5_1:46483916-46483935 Msa0733240:CDS 45.0%
TAAGGCCTTTGCCAGAGATT+TGG + chr5_1:46484465-46484484 Msa0733240:CDS 45.0%
ACGTGTGACTGTGACTACAT+AGG + chr5_1:46484552-46484571 Msa0733240:intron 45.0%
GTGTCTATACACGTCTAGAC+AGG - chr5_1:46484742-46484761 None:intergenic 45.0%
CTACTTATCTAACCTAGGCC+CGG - chr5_1:46484841-46484860 None:intergenic 45.0%
GTCCAGAACATGAACCACTT+AGG - chr5_1:46484876-46484895 None:intergenic 45.0%
! TTGTGCTGACCGAAATGCTA+AGG + chr5_1:46485200-46485219 Msa0733240:intron 45.0%
GATTCACTAACCTGAACCTG+TGG - chr5_1:46485463-46485482 None:intergenic 45.0%
! AGAAGAAGCGCAAATTCTCG+AGG - chr5_1:46485502-46485521 None:intergenic 45.0%
TGAACATGCTTCAGGATCAG+AGG + chr5_1:46485572-46485591 Msa0733240:CDS 45.0%
TCATCGTCAATGGCGGTTTC+TGG + chr5_1:46480489-46480508 Msa0733240:exon 50.0%
CATCGTCAATGGCGGTTTCT+GGG + chr5_1:46480490-46480509 Msa0733240:exon 50.0%
GGAATCGACGAGAGGAGAAA+AGG - chr5_1:46480650-46480669 None:intergenic 50.0%
!! TTCTCCTCTCGTCGATTCCA+AGG + chr5_1:46480651-46480670 Msa0733240:CDS 50.0%
GAAACCTTGGAATCGACGAG+AGG - chr5_1:46480658-46480677 None:intergenic 50.0%
!! GATTGGACCCTCGGATTAGT+TGG + chr5_1:46480838-46480857 Msa0733240:intron 50.0%
CATTCTCGCCAACTAATCCG+AGG - chr5_1:46480849-46480868 None:intergenic 50.0%
GTCCGAAGTCTCACACAACA+TGG - chr5_1:46480903-46480922 None:intergenic 50.0%
!! TGTAGCACCGACACTTCTGA+TGG - chr5_1:46480933-46480952 None:intergenic 50.0%
!! AGAAGTGTCGGTGCTACAAC+TGG + chr5_1:46480935-46480954 Msa0733240:intron 50.0%
GTCCAGACATCTGTGGATAC+TGG + chr5_1:46481126-46481145 Msa0733240:CDS 50.0%
GACCAGTATCCACAGATGTC+TGG - chr5_1:46481131-46481150 None:intergenic 50.0%
CATCTGTGGATACTGGTCCT+CGG + chr5_1:46481133-46481152 Msa0733240:CDS 50.0%
ATCTGTGGATACTGGTCCTC+GGG + chr5_1:46481134-46481153 Msa0733240:CDS 50.0%
! TCCTCGGGGTGTTCTTAGAT+TGG + chr5_1:46481149-46481168 Msa0733240:CDS 50.0%
! CAAGGTGTTCAAGCCTTCCT+TGG + chr5_1:46481174-46481193 Msa0733240:CDS 50.0%
AGGTGTTCAAGCCTTCCTTG+GGG + chr5_1:46481176-46481195 Msa0733240:CDS 50.0%
GGTCGGTCAAGAGTGGTTAA+CGG + chr5_1:46481197-46481216 Msa0733240:CDS 50.0%
CAGTCAACAAACTCATCCGC+TGG + chr5_1:46481792-46481811 Msa0733240:intron 50.0%
CATATCTGTCGGTAACCCAG+CGG - chr5_1:46481811-46481830 None:intergenic 50.0%
GAGGAGGTTGTTTGAACGTC+TGG + chr5_1:46481860-46481879 Msa0733240:CDS 50.0%
GGAGGTTGTTTGAACGTCTG+GGG + chr5_1:46481862-46481881 Msa0733240:CDS 50.0%
GAGGTTGTTTGAACGTCTGG+GGG + chr5_1:46481863-46481882 Msa0733240:CDS 50.0%
GATAAGGAAGGAGGGAAGAG+AGG + chr5_1:46482216-46482235 Msa0733240:intron 50.0%
! ACCATTGGTACAAGGGTGCA+AGG - chr5_1:46482394-46482413 None:intergenic 50.0%
! AGCTCCTCCAGTTCCTTTTG+AGG + chr5_1:46482504-46482523 Msa0733240:CDS 50.0%
GCTATAGAAGCGGAAGCAAG+GGG - chr5_1:46482601-46482620 None:intergenic 50.0%
GTGCTATAGAAGCGGAAGCA+AGG - chr5_1:46482603-46482622 None:intergenic 50.0%
TGCTTCCGCTTCTATAGCAC+AGG + chr5_1:46482603-46482622 Msa0733240:CDS 50.0%
AGCAAGGCTAAAAGGCTCAC+AGG + chr5_1:46482721-46482740 Msa0733240:CDS 50.0%
AAGGCTAAAAGGCTCACAGG+AGG + chr5_1:46482724-46482743 Msa0733240:CDS 50.0%
AAAAGGCTCACAGGAGGATG+TGG + chr5_1:46482730-46482749 Msa0733240:CDS 50.0%
CGTCACTGGTATGAGCAACA+TGG + chr5_1:46482861-46482880 Msa0733240:intron 50.0%
GATTGTCCTCCATTTGGGGA+TGG + chr5_1:46483261-46483280 Msa0733240:intron 50.0%
TCCTCCATTTGGGGATGGTT+GGG + chr5_1:46483266-46483285 Msa0733240:intron 50.0%
TAGAAGCAATGGGGCTCACT+AGG + chr5_1:46483599-46483618 Msa0733240:CDS 50.0%
!! GCAGTTATAAGGCTGGCTTC+TGG - chr5_1:46483742-46483761 None:intergenic 50.0%
ATGTGCATGCTGGGAATCTG+TGG + chr5_1:46483902-46483921 Msa0733240:CDS 50.0%
CTTCTACGTGATGGCCGTAT+CGG + chr5_1:46483925-46483944 Msa0733240:CDS 50.0%
! TCCATAGCCGCCCATGTTTT+GGG - chr5_1:46484355-46484374 None:intergenic 50.0%
! TTCCATAGCCGCCCATGTTT+TGG - chr5_1:46484356-46484375 None:intergenic 50.0%
GCGGCTATGGAAGTCTTCTT+AGG + chr5_1:46484364-46484383 Msa0733240:CDS 50.0%
! TCTGGGTTGAGAAGCAGCTG+CGG + chr5_1:46480507-46480526 Msa0733240:CDS 55.0%
CCGTCCACTTGCAGACAACA+CGG - chr5_1:46480815-46480834 None:intergenic 55.0%
CCGTGTTGTCTGCAAGTGGA+CGG + chr5_1:46480812-46480831 Msa0733240:intron 55.0%
CTGCAAGTGGACGGTGTGAT+TGG + chr5_1:46480821-46480840 Msa0733240:intron 55.0%
!! TGTCGGTGCTACAACTGGCA+AGG + chr5_1:46480940-46480959 Msa0733240:intron 55.0%
TCTGTGGATACTGGTCCTCG+GGG + chr5_1:46481135-46481154 Msa0733240:CDS 55.0%
GCCAATCTAAGAACACCCCG+AGG - chr5_1:46481153-46481172 None:intergenic 55.0%
GTTCAAGCCTTCCTTGGGGT+CGG + chr5_1:46481180-46481199 Msa0733240:CDS 55.0%
ACAAGCAAAGAGGAGGGAGG+AGG - chr5_1:46481921-46481940 None:intergenic 55.0%
GCCTTGCACCCTTGTACCAA+TGG + chr5_1:46482390-46482409 Msa0733240:intron 55.0%
GTCAACAACACCACCACCAC+TGG + chr5_1:46483099-46483118 Msa0733240:intron 55.0%
AACAACACCACCACCACTGG+TGG + chr5_1:46483102-46483121 Msa0733240:intron 55.0%
ACAACACCACCACCACTGGT+GGG + chr5_1:46483103-46483122 Msa0733240:intron 55.0%
GTCCTCCATTTGGGGATGGT+TGG + chr5_1:46483265-46483284 Msa0733240:intron 55.0%
ACCCAACCATCCCCAAATGG+AGG - chr5_1:46483270-46483289 None:intergenic 55.0%
TCCCAAAACATGGGCGGCTA+TGG + chr5_1:46484351-46484370 Msa0733240:CDS 55.0%
TGACTGATAGAACCGGGCCT+AGG + chr5_1:46484826-46484845 Msa0733240:intron 55.0%
TTTGCCTGCTGTTCAAGCGC+AGG + chr5_1:46485046-46485065 Msa0733240:intron 55.0%
AACTCCTGCGCTTGAACAGC+AGG - chr5_1:46485053-46485072 None:intergenic 55.0%
TGCTGTTCAAGCGCAGGAGT+TGG + chr5_1:46485052-46485071 Msa0733240:intron 55.0%
TGACCGGTACACACGGTTGT+TGG + chr5_1:46485540-46485559 Msa0733240:CDS 55.0%
GAGCCAACAACCGTGTGTAC+CGG - chr5_1:46485546-46485565 None:intergenic 55.0%
GGGTCCGTGTTGTCTGCAAG+TGG + chr5_1:46480808-46480827 Msa0733240:intron 60.0%
GGACGGTGTGATTGGACCCT+CGG + chr5_1:46480829-46480848 Msa0733240:intron 60.0%
CTCTTGACCGACCCCAAGGA+AGG - chr5_1:46481190-46481209 None:intergenic 60.0%
TCCTTGGGGTCGGTCAAGAG+TGG + chr5_1:46481190-46481209 Msa0733240:CDS 60.0%
ACCACTCTTGACCGACCCCA+AGG - chr5_1:46481194-46481213 None:intergenic 60.0%
!! AAGCGGAAGCAAGGGGTGTC+GGG - chr5_1:46482594-46482613 None:intergenic 60.0%
! GAAGCGGAAGCAAGGGGTGT+CGG - chr5_1:46482595-46482614 None:intergenic 60.0%
CAACACCACCACCACTGGTG+GGG + chr5_1:46483104-46483123 Msa0733240:intron 60.0%
! AGCAAGGGGCGCATCCTAAG+TGG + chr5_1:46484859-46484878 Msa0733240:intron 60.0%
ACCACCACCACTGGTGGGGT+CGG + chr5_1:46483108-46483127 Msa0733240:intron 65.0%
TCATGAGCCGACCCCACCAG+TGG - chr5_1:46483118-46483137 None:intergenic 65.0%
TGAGCCGACCCCACCAGTGG+TGG - chr5_1:46483115-46483134 None:intergenic 70.0%
GCCGACCCCACCAGTGGTGG+TGG - chr5_1:46483112-46483131 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 46480364 46485762 46480364 ID=Msa0733240;Name=Msa0733240
chr5_1 mRNA 46480364 46485762 46480364 ID=Msa0733240-mRNA-1;Parent=Msa0733240;Name=Msa0733240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=134|1|1|1|1|1|10|129|534
chr5_1 exon 46480364 46480672 46480364 ID=Msa0733240-mRNA-1:exon:13216;Parent=Msa0733240-mRNA-1
chr5_1 exon 46481088 46481230 46481088 ID=Msa0733240-mRNA-1:exon:13217;Parent=Msa0733240-mRNA-1
chr5_1 exon 46481795 46481908 46481795 ID=Msa0733240-mRNA-1:exon:13218;Parent=Msa0733240-mRNA-1
chr5_1 exon 46482436 46482624 46482436 ID=Msa0733240-mRNA-1:exon:13219;Parent=Msa0733240-mRNA-1
chr5_1 exon 46482713 46482868 46482713 ID=Msa0733240-mRNA-1:exon:13220;Parent=Msa0733240-mRNA-1
chr5_1 exon 46483508 46483773 46483508 ID=Msa0733240-mRNA-1:exon:13221;Parent=Msa0733240-mRNA-1
chr5_1 exon 46483864 46483961 46483864 ID=Msa0733240-mRNA-1:exon:13222;Parent=Msa0733240-mRNA-1
chr5_1 exon 46484332 46484510 46484332 ID=Msa0733240-mRNA-1:exon:13223;Parent=Msa0733240-mRNA-1
chr5_1 exon 46485068 46485184 46485068 ID=Msa0733240-mRNA-1:exon:13224;Parent=Msa0733240-mRNA-1
chr5_1 exon 46485466 46485762 46485466 ID=Msa0733240-mRNA-1:exon:13225;Parent=Msa0733240-mRNA-1
chr5_1 five_prime_UTR 46480364 46480497 46480364 ID=Msa0733240-mRNA-1:five_prime_utr;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46480498 46480672 46480498 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46481088 46481230 46481088 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46481795 46481908 46481795 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46482436 46482624 46482436 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46482713 46482868 46482713 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46483508 46483773 46483508 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46483864 46483961 46483864 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46484332 46484510 46484332 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46485068 46485184 46485068 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 CDS 46485466 46485633 46485466 ID=Msa0733240-mRNA-1:cds;Parent=Msa0733240-mRNA-1
chr5_1 three_prime_UTR 46485634 46485762 46485634 ID=Msa0733240-mRNA-1:three_prime_utr;Parent=Msa0733240-mRNA-1
Gene Sequence

>Msa0733240

ATGGCGGTTTCTGGGTTGAGAAGCAGCTGCGGTTTACCATTGATTCATCATCACAATCATCTTCGTTTCTCTTCTTCCTTCACGAACCTCAATCTTCATTCTAAGTCAAAGCGTTTCACTCTCTTTGCTCGTTATGCTCAAACTCAGGACCTTTTCTCCTCTCGTCGATTCCAAGATAGTATCGAAAAGCTACCTAAGCTTGTAGAGGATATTGTCCAGACATCTGTGGATACTGGTCCTCGGGGTGTTCTTAGATTGGCTCAAGGTGTTCAAGCCTTCCTTGGGGTCGGTCAAGAGTGGTTAACGGATGTATCCAAGTCAACAAACTCATCCGCTGGGTTACCGACAGATATGCAGCTTGGTCTTCTGTCCCCCTTATATTTGAGGAGGTTGTTTGAACGTCTGGGGGCAACCTACATCAAATTAGGACAGTTCATAGCATCCGCACCAACACTATTTCCAGCTGAGTATGTACAAGAGTTCCAGAATTGTTTTGATAGAGCTCCTCCAGTTCCTTTTGAGGTAATTCAATCAATATTGCGTAAGGAATTAGGAAGACCAATAGAAAGTGTGTACGAATATGTTGACCCGACACCCCTTGCTTCCGCTTCTATAGCACAGGTTCATGGAGCAAGGCTAAAAGGCTCACAGGAGGATGTGGTTATAAAGGTCTTAAAACCAGGAATAGAGGACATATTAGTAGCAGATCTTAATTTTGTTTATGTTGTTGCTCGGATATTGGAGTTTTTGAATCCTGAAATAAGTCGGACGTCACTGGTTGGTATTGTCAAAGACATACGAGAGTCTATGCTTGAAGAAGTTGACTTTTACAAGGAGGCTGCAAATATTGAGGCTTTCAGGAGATATTTAGAAGCAATGGGGCTCACTAGGCAAGCTACAGCTCCAAAAGTGTATCAAAACTGCAGTACGCGGCAAATTTTAACCATGCAAAGACTATATGGTGTTCCTCTTACTGACCTAGACTCAATTAGGTCATTAGTTACTAACCCAGAAGCCAGCCTTATAACTGCTCTCAATGTGTGGTTTGGAAGTTTGCTTGCATGTGAATCTTTTCATGCAGATGTGCATGCTGGGAATCTGTGGCTTCTACGTGATGGCCGTATCGGATTTCTTGACTTCGGAATTGTTGGTCGTATATCTCCCAAAACATGGGCGGCTATGGAAGTCTTCTTAGGATCAATTGCCATCGATGATTATGACTCAATGGCATCTTCCTTAATTCAAATGGGTGCTACAAACAACGATGTTAATGCTAAGGCCTTTGCCAGAGATTTGGAGAAAGTGTTCTCATCAATGAAGGAGTTGGACACTGAAATAGTTGTAGCAACTAGAAGTGGAACAGCCAGAAATCCAGCTGCTATATCTGCTAATGTAGTTGTTGATGAGAGGCAGATGAATGCCCTATTTCTTGATGTGGTTCAGGTTAGTGAATCTTATGGATTGAAGTTTCCTCGAGAATTTGCGCTTCTTCTGAAGCAGCTCTTGTATTTTGACCGGTACACACGGTTGTTGGCTCCCAATTTGAACATGCTTCAGGATCAGAGGATTTCCATTGCTTCCAATAGAAGAAGCAACTATACATAA
Protein sequence

>Msa0733240

MAVSGLRSSCGLPLIHHHNHLRFSSSFTNLNLHSKSKRFTLFARYAQTQDLFSSRRFQDSIEKLPKLVEDIVQTSVDTGPRGVLRLAQGVQAFLGVGQEWLTDVSKSTNSSAGLPTDMQLGLLSPLYLRRLFERLGATYIKLGQFIASAPTLFPAEYVQEFQNCFDRAPPVPFEVIQSILRKELGRPIESVYEYVDPTPLASASIAQVHGARLKGSQEDVVIKVLKPGIEDILVADLNFVYVVARILEFLNPEISRTSLVGIVKDIRESMLEEVDFYKEAANIEAFRRYLEAMGLTRQATAPKVYQNCSTRQILTMQRLYGVPLTDLDSIRSLVTNPEASLITALNVWFGSLLACESFHADVHAGNLWLLRDGRIGFLDFGIVGRISPKTWAAMEVFLGSIAIDDYDSMASSLIQMGATNNDVNAKAFARDLEKVFSSMKELDTEIVVATRSGTARNPAAISANVVVDERQMNALFLDVVQVSESYGLKFPREFALLLKQLLYFDRYTRLLAPNLNMLQDQRISIASNRRSNYT*