AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1342360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342360 MtrunA17_Chr3g0103371 93.960 149 9 0 1 149 1 149 9.14e-92 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1342360 AT2G01870.1 37.398 123 61 5 34 149 13 126 4.09e-16 71.2

Find 41 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCGTGTCTTAAAATT+TGG 0.120400 tig0005557:+3532 Msa1342360:five_prime_UTR
GGAAATGAAGATAATGTTTA+TGG 0.128032 tig0005557:-3506 None:intergenic
TCAACTTAGGAAAGAATATT+TGG 0.173434 tig0005557:+4869 Msa1342360:three_prime_UTR
AAGCTCTTTGAGGGCTTCTT+TGG 0.197880 tig0005557:-3803 None:intergenic
AGGGCTTCTTTGGCTTTCTC+TGG 0.231668 tig0005557:-3793 None:intergenic
CTGCATAGTTCATGCATTAA+AGG 0.282045 tig0005557:+3744 Msa1342360:CDS
GAGAGAGTACCCTTGAGTTT+TGG 0.292782 tig0005557:-3868 None:intergenic
CTTCTCGTGTCTTAAAATTT+GGG 0.300531 tig0005557:+3533 Msa1342360:five_prime_UTR
CCAATTGATGAAAATTTAAG+TGG 0.385000 tig0005557:-4894 None:intergenic
GAAAGTGATGCAAATAATAA+TGG 0.386523 tig0005557:-3640 None:intergenic
GTAATTAAGCCAGCCATTGA+TGG 0.399846 tig0005557:+4682 Msa1342360:CDS
TTATTACATAATAACGATAA+AGG 0.404120 tig0005557:+3670 Msa1342360:CDS
CTGCACTTGGATATAGGTTA+TGG 0.412024 tig0005557:-4706 None:intergenic
TCGCGACATATATAAAGTTA+AGG 0.412406 tig0005557:+4758 Msa1342360:three_prime_UTR
ACATATATAAAGTTAAGGTT+TGG 0.420592 tig0005557:+4763 Msa1342360:three_prime_UTR
TTTCTGGTCAAGCTCTTTGA+GGG 0.426726 tig0005557:-3812 None:intergenic
ACCTTTCTTGCACTTCTAGC+TGG 0.428554 tig0005557:+4613 Msa1342360:CDS
CACACACTGCACTTGGATAT+AGG 0.429892 tig0005557:-4712 None:intergenic
GGGCTTCTTTGGCTTTCTCT+GGG 0.431656 tig0005557:-3792 None:intergenic
GTGTGATATTAATTAATTTG+CGG 0.439644 tig0005557:+4730 Msa1342360:three_prime_UTR
TTAATATCACACACTGCACT+TGG 0.458769 tig0005557:-4719 None:intergenic
TTTCTTGCACTTCTAGCTGG+TGG 0.505803 tig0005557:+4616 Msa1342360:CDS
ACCAGCTAGAAGTGCAAGAA+AGG 0.506989 tig0005557:-4614 None:intergenic
GGCTGCTTATAGATGCTAAG+AGG 0.520680 tig0005557:-3616 None:intergenic
TATAGGTTATGGACCATCAA+TGG 0.534653 tig0005557:-4695 None:intergenic
GACAACATTAAAATCAACTT+AGG 0.546871 tig0005557:+4856 Msa1342360:three_prime_UTR
TGGCTGGCTTAATTACAGTA+AGG 0.551216 tig0005557:-4675 None:intergenic
AGTTTCCTCTCCAAAACTCA+AGG 0.567427 tig0005557:+3858 Msa1342360:CDS
GGTTATGGACCATCAATGGC+TGG 0.567707 tig0005557:-4691 None:intergenic
CTTATCACCTCCTCTCTCGT+AGG 0.590439 tig0005557:-4559 None:intergenic
ATAAAGGCATATTCAAAGAG+AGG 0.608157 tig0005557:+3686 Msa1342360:CDS
GTTTCCTCTCCAAAACTCAA+GGG 0.619477 tig0005557:+3859 Msa1342360:CDS
GAATAACATCTGAATATGAG+TGG 0.621057 tig0005557:-3584 None:intergenic
AGAAATGAAGCCTACGAGAG+AGG 0.629871 tig0005557:+4549 Msa1342360:CDS
CAGAATCTTAGCAACATGCG+TGG 0.639323 tig0005557:-4831 None:intergenic
AGAATCTTAGCAACATGCGT+GGG 0.645379 tig0005557:-4830 None:intergenic
AAGGCATATTCAAAGAGAGG+AGG 0.658459 tig0005557:+3689 Msa1342360:CDS
AATGAAGCCTACGAGAGAGG+AGG 0.660242 tig0005557:+4552 Msa1342360:CDS
GTGAATGTAGTGAAGAGTGA+AGG 0.676798 tig0005557:+3555 Msa1342360:five_prime_UTR
AGTGATGCAAATAATAATGG+TGG 0.676828 tig0005557:-3637 None:intergenic
GAGGTGATAAGTGACAACAA+TGG 0.780630 tig0005557:+4571 Msa1342360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTACATAATAACGATAA+AGG + tig0005557:3670-3689 Msa1342360:CDS 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG + tig0005557:4033-4052 Msa1342360:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG - tig0005557:4040-4059 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG + tig0005557:4071-4090 Msa1342360:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG - tig0005557:4342-4361 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG + tig0005557:4346-4365 Msa1342360:intron 15.0%
!! TTATTACATAATAACGATAA+AGG + tig0005557:3670-3689 Msa1342360:CDS 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG + tig0005557:4033-4052 Msa1342360:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG - tig0005557:4040-4059 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG + tig0005557:4071-4090 Msa1342360:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG - tig0005557:4342-4361 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG + tig0005557:4346-4365 Msa1342360:intron 15.0%
!! CAAAATAAGAGAAAAAGAAA+CGG - tig0005557:3893-3912 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG - tig0005557:4041-4060 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG - tig0005557:4127-4146 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG - tig0005557:4254-4273 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG - tig0005557:4255-4274 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG - tig0005557:4310-4329 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG - tig0005557:4504-4523 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG + tig0005557:4730-4749 Msa1342360:three_prime_UTR 20.0%
!! ACATATATAAAGTTAAGGTT+TGG + tig0005557:4763-4782 Msa1342360:three_prime_UTR 20.0%
!! CAAAATAAGAGAAAAAGAAA+CGG - tig0005557:3893-3912 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG - tig0005557:4041-4060 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG - tig0005557:4127-4146 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG - tig0005557:4254-4273 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG - tig0005557:4255-4274 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG - tig0005557:4310-4329 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG - tig0005557:4504-4523 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG + tig0005557:4730-4749 Msa1342360:three_prime_UTR 20.0%
!! ACATATATAAAGTTAAGGTT+TGG + tig0005557:4763-4782 Msa1342360:three_prime_UTR 20.0%
! GGAAATGAAGATAATGTTTA+TGG - tig0005557:3509-3528 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG - tig0005557:3643-3662 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG - tig0005557:3831-3850 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG + tig0005557:3929-3948 Msa1342360:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG + tig0005557:3951-3970 Msa1342360:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG + tig0005557:4008-4027 Msa1342360:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG + tig0005557:4053-4072 Msa1342360:intron 25.0%
! GACTTTACACCTTATTATTA+CGG - tig0005557:4210-4229 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG + tig0005557:4211-4230 Msa1342360:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG + tig0005557:4212-4231 Msa1342360:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG + tig0005557:4381-4400 Msa1342360:intron 25.0%
! GACAACATTAAAATCAACTT+AGG + tig0005557:4856-4875 Msa1342360:three_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG + tig0005557:4869-4888 Msa1342360:three_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG - tig0005557:4897-4916 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG + tig0005557:4894-4913 Msa1342360:three_prime_UTR 25.0%
! GGAAATGAAGATAATGTTTA+TGG - tig0005557:3509-3528 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG - tig0005557:3643-3662 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG - tig0005557:3831-3850 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG + tig0005557:3929-3948 Msa1342360:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG + tig0005557:3951-3970 Msa1342360:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG + tig0005557:4008-4027 Msa1342360:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG + tig0005557:4053-4072 Msa1342360:intron 25.0%
! GACTTTACACCTTATTATTA+CGG - tig0005557:4210-4229 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG + tig0005557:4211-4230 Msa1342360:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG + tig0005557:4212-4231 Msa1342360:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG + tig0005557:4381-4400 Msa1342360:intron 25.0%
! GACAACATTAAAATCAACTT+AGG + tig0005557:4856-4875 Msa1342360:three_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG + tig0005557:4869-4888 Msa1342360:three_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG - tig0005557:4897-4916 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG + tig0005557:4894-4913 Msa1342360:three_prime_UTR 25.0%
CTTCTCGTGTCTTAAAATTT+GGG + tig0005557:3533-3552 Msa1342360:five_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG - tig0005557:3587-3606 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG - tig0005557:3640-3659 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG + tig0005557:3686-3705 Msa1342360:CDS 30.0%
AATTGACCACCGTAATAATA+AGG + tig0005557:4198-4217 Msa1342360:intron 30.0%
TTTACACCTTATTATTACGG+TGG - tig0005557:4207-4226 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG - tig0005557:4283-4302 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG + tig0005557:4386-4405 Msa1342360:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG + tig0005557:4387-4406 Msa1342360:intron 30.0%
TCGCGACATATATAAAGTTA+AGG + tig0005557:4758-4777 Msa1342360:three_prime_UTR 30.0%
CTTCTCGTGTCTTAAAATTT+GGG + tig0005557:3533-3552 Msa1342360:five_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG - tig0005557:3587-3606 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG - tig0005557:3640-3659 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG + tig0005557:3686-3705 Msa1342360:CDS 30.0%
AATTGACCACCGTAATAATA+AGG + tig0005557:4198-4217 Msa1342360:intron 30.0%
TTTACACCTTATTATTACGG+TGG - tig0005557:4207-4226 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG - tig0005557:4283-4302 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG + tig0005557:4386-4405 Msa1342360:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG + tig0005557:4387-4406 Msa1342360:intron 30.0%
TCGCGACATATATAAAGTTA+AGG + tig0005557:4758-4777 Msa1342360:three_prime_UTR 30.0%
!!! TTTTAAGACACGAGAAGCAA+TGG - tig0005557:3530-3549 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG + tig0005557:3532-3551 Msa1342360:five_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG + tig0005557:3744-3763 Msa1342360:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG - tig0005557:4099-4118 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG + tig0005557:4100-4119 Msa1342360:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG - tig0005557:4172-4191 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG - tig0005557:4284-4303 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG - tig0005557:4289-4308 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG - tig0005557:4413-4432 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG - tig0005557:4414-4433 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG + tig0005557:4472-4491 Msa1342360:intron 35.0%
TATAGGTTATGGACCATCAA+TGG - tig0005557:4698-4717 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG - tig0005557:4722-4741 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG - tig0005557:4819-4838 None:intergenic 35.0%
!!! TTTTAAGACACGAGAAGCAA+TGG - tig0005557:3530-3549 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG + tig0005557:3532-3551 Msa1342360:five_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG + tig0005557:3744-3763 Msa1342360:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG - tig0005557:4099-4118 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG + tig0005557:4100-4119 Msa1342360:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG - tig0005557:4172-4191 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG - tig0005557:4284-4303 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG - tig0005557:4289-4308 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG - tig0005557:4413-4432 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG - tig0005557:4414-4433 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG + tig0005557:4472-4491 Msa1342360:intron 35.0%
TATAGGTTATGGACCATCAA+TGG - tig0005557:4698-4717 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG - tig0005557:4722-4741 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG - tig0005557:4819-4838 None:intergenic 35.0%
GTGAATGTAGTGAAGAGTGA+AGG + tig0005557:3555-3574 Msa1342360:five_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG + tig0005557:3689-3708 Msa1342360:CDS 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG - tig0005557:3815-3834 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG - tig0005557:3816-3835 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG + tig0005557:3858-3877 Msa1342360:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG + tig0005557:3859-3878 Msa1342360:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG - tig0005557:3977-3996 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG + tig0005557:4216-4235 Msa1342360:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG + tig0005557:4571-4590 Msa1342360:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG - tig0005557:4678-4697 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG + tig0005557:4682-4701 Msa1342360:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG - tig0005557:4709-4728 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG - tig0005557:4833-4852 None:intergenic 40.0%
GTGAATGTAGTGAAGAGTGA+AGG + tig0005557:3555-3574 Msa1342360:five_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG + tig0005557:3689-3708 Msa1342360:CDS 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG - tig0005557:3815-3834 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG - tig0005557:3816-3835 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG + tig0005557:3858-3877 Msa1342360:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG + tig0005557:3859-3878 Msa1342360:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG - tig0005557:3977-3996 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG + tig0005557:4216-4235 Msa1342360:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG + tig0005557:4571-4590 Msa1342360:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG - tig0005557:4678-4697 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG + tig0005557:4682-4701 Msa1342360:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG - tig0005557:4709-4728 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG - tig0005557:4833-4852 None:intergenic 40.0%
GGCTGCTTATAGATGCTAAG+AGG - tig0005557:3619-3638 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG - tig0005557:3806-3825 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG - tig0005557:3866-3885 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG - tig0005557:3871-3890 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG + tig0005557:4157-4176 Msa1342360:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG + tig0005557:4549-4568 Msa1342360:CDS 45.0%
ACCTTTCTTGCACTTCTAGC+TGG + tig0005557:4613-4632 Msa1342360:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG - tig0005557:4617-4636 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG + tig0005557:4616-4635 Msa1342360:CDS 45.0%
CACACACTGCACTTGGATAT+AGG - tig0005557:4715-4734 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG - tig0005557:4834-4853 None:intergenic 45.0%
GGCTGCTTATAGATGCTAAG+AGG - tig0005557:3619-3638 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG - tig0005557:3806-3825 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG - tig0005557:3866-3885 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG - tig0005557:3871-3890 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG + tig0005557:4157-4176 Msa1342360:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG + tig0005557:4549-4568 Msa1342360:CDS 45.0%
ACCTTTCTTGCACTTCTAGC+TGG + tig0005557:4613-4632 Msa1342360:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG - tig0005557:4617-4636 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG + tig0005557:4616-4635 Msa1342360:CDS 45.0%
CACACACTGCACTTGGATAT+AGG - tig0005557:4715-4734 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG - tig0005557:4834-4853 None:intergenic 45.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG - tig0005557:3795-3814 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG - tig0005557:3796-3815 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG + tig0005557:3969-3988 Msa1342360:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG + tig0005557:4552-4571 Msa1342360:CDS 50.0%
CTTATCACCTCCTCTCTCGT+AGG - tig0005557:4562-4581 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG - tig0005557:4694-4713 None:intergenic 50.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG - tig0005557:3795-3814 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG - tig0005557:3796-3815 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG + tig0005557:3969-3988 Msa1342360:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG + tig0005557:4552-4571 Msa1342360:CDS 50.0%
CTTATCACCTCCTCTCTCGT+AGG - tig0005557:4562-4581 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG - tig0005557:4694-4713 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
tig0005557 gene 3493 4944 3493 ID=Msa1342360;Name=Msa1342360
tig0005557 mRNA 3493 4944 3493 ID=Msa1342360-mRNA-1;Parent=Msa1342360;Name=Msa1342360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|233|149
tig0005557 exon 3493 3880 3493 ID=Msa1342360-mRNA-1:exon:3582;Parent=Msa1342360-mRNA-1
tig0005557 exon 4545 4944 4545 ID=Msa1342360-mRNA-1:exon:3583;Parent=Msa1342360-mRNA-1
tig0005557 five_prime_UTR 3493 3597 3493 ID=Msa1342360-mRNA-1:five_prime_utr;Parent=Msa1342360-mRNA-1
tig0005557 CDS 3598 3880 3598 ID=Msa1342360-mRNA-1:cds;Parent=Msa1342360-mRNA-1
tig0005557 CDS 4545 4711 4545 ID=Msa1342360-mRNA-1:cds;Parent=Msa1342360-mRNA-1
tig0005557 three_prime_UTR 4712 4944 4712 ID=Msa1342360-mRNA-1:three_prime_utr;Parent=Msa1342360-mRNA-1
Gene Sequence

>Msa1342360

ATGTTATTCTCTATGAAACCTCTTAGCATCTATAAGCAGCCACCATTATTATTTGCATCACTTTCTAAATCGTTATTACATAATAACGATAAAGGCATATTCAAAGAGAGGAGGCTCATAAAATATTCTTCTTCATTTAATTTATGCTGCATAGTTCATGCATTAAAGGAAGATTCAAAGCAATATGAGATAGACCCAGAGAAAGCCAAAGAAGCCCTCAAAGAGCTTGACCAGAAAATTCAATCTATCTCTAGTAGAGAAGTTTCCTCTCCAAAACTCAAGGTATCAGAAATGAAGCCTACGAGAGAGGAGGTGATAAGTGACAACAATGGTAAGCTAGAAATTTCAGAGACCTTTCTTGCACTTCTAGCTGGTGGACTTGTTCTCTTTACTATATTGTACAATGTACTATTCCTTACTGTAATTAAGCCAGCCATTGATGGTCCATAA

Protein sequence

>Msa1342360

MLFSMKPLSIYKQPPLLFASLSKSLLHNNDKGIFKERRLIKYSSSFNLCCIVHALKEDSKQYEIDPEKAKEALKELDQKIQSISSREVSSPKLKVSEMKPTREEVISDNNGKLEISETFLALLAGGLVLFTILYNVLFLTVIKPAIDGP*