AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0616890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616890 MtrunA17_Chr8g0380251 95.455 374 16 1 1 374 1 373 0.0 729
Msa0616890 MtrunA17_Chr1g0186021 32.157 255 161 6 99 346 121 370 5.17e-35 134
Msa0616890 MtrunA17_Chr1g0173891 30.242 248 159 5 136 374 13 255 3.01e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0616890 AT5G46390.1 61.318 349 116 3 41 372 49 395 1.31e-148 427
Msa0616890 AT5G46390.2 61.254 351 117 3 41 374 49 397 6.01e-148 428
Msa0616890 AT3G57680.1 26.744 344 221 7 41 374 79 401 5.20e-33 129
Msa0616890 AT4G17740.1 31.373 255 163 6 99 346 133 382 8.68e-33 129
Msa0616890 AT4G17740.2 31.373 255 163 6 99 346 123 372 9.57e-33 129
Msa0616890 AT3G57680.3 28.514 249 165 5 136 374 7 252 7.33e-28 113
Msa0616890 AT3G57680.2 28.514 249 165 5 136 374 7 252 7.33e-28 113

Find 156 sgRNAs with CRISPR-Local

Find 317 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTATACCTGGAAGTTTC+TGG 0.170732 4_2:-67144938 None:intergenic
CATGCAGGAGTTCGTATTTA+AGG 0.185407 4_2:+67145485 Msa0616890:three_prime_UTR
ACATGACATTGTCAAATTAT+TGG 0.192213 4_2:+67145684 Msa0616890:three_prime_UTR
CGGAACATCTGTGACTATTC+AGG 0.254157 4_2:+67142724 Msa0616890:CDS
AATGATGACTTTCTTGATAC+TGG 0.275077 4_2:+67141121 Msa0616890:CDS
GAAAGCTTAGTGGGAATAAT+TGG 0.279646 4_2:-67140881 None:intergenic
GAAGGTATTGGGATTAATAT+TGG 0.289827 4_2:+67142341 Msa0616890:CDS
TGCGGATTCTTTACCCTTGC+TGG 0.291686 4_2:-67145371 None:intergenic
TTCCGTTAGGGCCTTGCAAC+AGG 0.291802 4_2:-67142706 None:intergenic
AAACAACAGCTTGCTGGAAC+TGG 0.294485 4_2:-67144273 None:intergenic
AAGAGAGGAGATTAGGAAAT+CGG 0.296703 4_2:-67144398 None:intergenic
GTTAATAACACAGAGGTAAA+TGG 0.308388 4_2:+67142659 Msa0616890:CDS
CCAAAGCACAAGGACATAAA+TGG 0.324637 4_2:+67144894 Msa0616890:three_prime_UTR
AAGCTTTGCAATTTCAATTC+CGG 0.328383 4_2:-67143625 None:intergenic
TTACCGTGTCTCCTTCGTTT+AGG 0.341822 4_2:-67143650 None:intergenic
GAAAGTGGTGCTGCTCATAT+TGG 0.341972 4_2:+67142936 Msa0616890:CDS
GGTGAAAGAAAACGTGTATA+AGG 0.347877 4_2:-67141697 None:intergenic
CAAGCGAATGCTGACCAGTT+TGG 0.349414 4_2:+67141669 Msa0616890:CDS
CCTGACTTCCAGAAACTTCC+AGG 0.357007 4_2:+67144930 Msa0616890:three_prime_UTR
AGGGAAGTTACGGATGAAAA+TGG 0.361071 4_2:+67142306 Msa0616890:CDS
CTCAACATCACGGCATGTTT+CGG 0.366378 4_2:-67141020 None:intergenic
CCATTTATGTCCTTGTGCTT+TGG 0.367073 4_2:-67144894 None:intergenic
AAGCGAATGCTGACCAGTTT+GGG 0.376696 4_2:+67141670 Msa0616890:CDS
CTGGTATTGGAATAAACCTT+AGG 0.384790 4_2:+67142286 Msa0616890:CDS
CTTGCAACTACACTCTCCTT+TGG 0.384978 4_2:+67140920 Msa0616890:CDS
AGAGAGGAGATTAGGAAATC+GGG 0.386696 4_2:-67144397 None:intergenic
GACCATAGGCTGAAGGTATT+GGG 0.393402 4_2:+67142330 Msa0616890:CDS
TGAACTTCAATTGATTCAAC+AGG 0.393542 4_2:-67142864 None:intergenic
AGACCATAGGCTGAAGGTAT+TGG 0.393937 4_2:+67142329 Msa0616890:CDS
TGCCTTTGACCTTGTCTGAA+TGG 0.396329 4_2:-67141635 None:intergenic
TACCAATGAAGGACTTGTTC+AGG 0.398498 4_2:+67141081 Msa0616890:CDS
GAGGAAGTAGAGAGAGGGAT+TGG 0.399045 4_2:-67140998 None:intergenic
TATCCGAAACAACAGCTTGC+TGG 0.404299 4_2:-67144279 None:intergenic
TACAGTATGTCGTTGTTTAG+TGG 0.410190 4_2:+67144474 Msa0616890:three_prime_UTR
TCATGTATTCATATATCAAT+AGG 0.413227 4_2:-67145667 None:intergenic
TAGTAATACTTAACTAATAT+AGG 0.420478 4_2:+67145539 Msa0616890:three_prime_UTR
TTCCTGAACAAGTCCTTCAT+TGG 0.422208 4_2:-67141083 None:intergenic
CTTGAAGCTCAAATACAGAT+TGG 0.425182 4_2:-67144830 None:intergenic
GTTCCAGCAAGCTGTTGTTT+CGG 0.436242 4_2:+67144276 Msa0616890:CDS
CTGGTGTGGTTATAACTGTT+GGG 0.440327 4_2:+67144859 Msa0616890:three_prime_UTR
GACGGTCCTGCTCATTCTGC+TGG 0.446334 4_2:+67142363 Msa0616890:CDS
TGGTCGCAACCGTTGGTCTC+AGG 0.446965 4_2:+67141141 Msa0616890:CDS
CCTGGAAGTTTCTGGAAGTC+AGG 0.447399 4_2:-67144930 None:intergenic
TGCTTCTGGTCTTCCAGCAA+GGG 0.449334 4_2:+67145358 Msa0616890:three_prime_UTR
CCAATGCATTGAACTCTTTG+AGG 0.452389 4_2:-67142968 None:intergenic
TCTGGTGTGGTTATAACTGT+TGG 0.453331 4_2:+67144858 Msa0616890:three_prime_UTR
CATGTCATACCTCGCCATCT+TGG 0.454892 4_2:-67142262 None:intergenic
GTAGAGAGAGGGATTGGAAG+AGG 0.456800 4_2:-67140992 None:intergenic
CCTTCATTGGTAACAACCTC+AGG 0.460247 4_2:-67141070 None:intergenic
TGAAGTTCAGCGGCAATTTG+TGG 0.460683 4_2:+67142878 Msa0616890:CDS
AAGTTGCTTCAGTTATGCTC+TGG 0.460865 4_2:-67145510 None:intergenic
TGAAGAGCAGATGCAGAAGA+AGG 0.463218 4_2:-67140962 None:intergenic
AACAACAGCTTGCTGGAACT+GGG 0.463806 4_2:-67144272 None:intergenic
AAAGTGGTGCTGCTCATATT+GGG 0.464184 4_2:+67142937 Msa0616890:CDS
CACTTTCAGTTTGTTCCATA+CGG 0.469501 4_2:-67142920 None:intergenic
TTGCTTCTGGTCTTCCAGCA+AGG 0.470311 4_2:+67145357 Msa0616890:three_prime_UTR
AGGTATGACATGACTGGTAT+TGG 0.470655 4_2:+67142273 Msa0616890:CDS
ATCCCAATACCTTCAGCCTA+TGG 0.471410 4_2:-67142332 None:intergenic
TTGGATCTTAGAGATAATCT+TGG 0.473432 4_2:+67143126 Msa0616890:CDS
CTCGTTGGAAAACGCACGTA+TGG 0.473888 4_2:+67144711 Msa0616890:three_prime_UTR
TGTATAAGGATCGCCCAAAC+TGG 0.475811 4_2:-67141683 None:intergenic
ACAACAGCTTGCTGGAACTG+GGG 0.481816 4_2:-67144271 None:intergenic
AATAAACCTTAGGGAAGTTA+CGG 0.481828 4_2:+67142296 Msa0616890:CDS
TGGGGTGTTGAAAGTATTGT+TGG 0.482845 4_2:-67140839 None:intergenic
AGCAGATGCAGAAGAAGGGA+AGG 0.488126 4_2:-67140957 None:intergenic
ATAGTCACAGATGTTCCGTT+AGG 0.490282 4_2:-67142719 None:intergenic
AAGGACTTGTTCAGGAAGCT+TGG 0.491839 4_2:+67141089 Msa0616890:CDS
GAAGATGAAGATGATGATGA+TGG 0.492004 4_2:-67140859 None:intergenic
CCTGAGGTTGTTACCAATGA+AGG 0.492506 4_2:+67141070 Msa0616890:CDS
TTGATACTGGTCGCAACCGT+TGG 0.494736 4_2:+67141134 Msa0616890:CDS
AAGATCCAATACAAAATATG+AGG 0.497184 4_2:-67143112 None:intergenic
TCTGTATTTGAGCTTCAAGA+TGG 0.497337 4_2:+67144834 Msa0616890:three_prime_UTR
TTGCAAGGAGGGTGTTGTGA+AGG 0.501563 4_2:-67140904 None:intergenic
TCATTCTGCTGGTGTCAGAC+AGG 0.502702 4_2:+67142374 Msa0616890:CDS
TGATAGGTCATCTACACTGC+TGG 0.503687 4_2:+67144241 Msa0616890:intron
ATGAGATGAATGAGAGGCTA+TGG 0.504700 4_2:+67140597 Msa0616890:five_prime_UTR
TTTGAGCTTCAAGATGGGTC+TGG 0.505669 4_2:+67144840 Msa0616890:three_prime_UTR
TAATCTTGGTGGGCTAGTGC+AGG 0.505943 4_2:+67143140 Msa0616890:CDS
TGCAAGGAGGGTGTTGTGAA+GGG 0.514883 4_2:-67140903 None:intergenic
ATAGACACATAACACAAGAT+TGG 0.515667 4_2:+67145439 Msa0616890:three_prime_UTR
GAGAGAGGGATTGGAAGAGG+AGG 0.520963 4_2:-67140989 None:intergenic
TGGTATTGGAATAAACCTTA+GGG 0.523685 4_2:+67142287 Msa0616890:CDS
AGAGCATAACTGAAGCAACT+TGG 0.524493 4_2:+67145512 Msa0616890:three_prime_UTR
TGTTGAAAGTATTGTTGGAG+TGG 0.527937 4_2:-67140834 None:intergenic
GAAGAATGGATTACCTCCTC+AGG 0.528232 4_2:-67141718 None:intergenic
TTGTGAAGGGAAAGCTTAGT+GGG 0.528461 4_2:-67140890 None:intergenic
GTTGTGAAGGGAAAGCTTAG+TGG 0.530687 4_2:-67140891 None:intergenic
TGTTCCATACGGTAAGAGAC+TGG 0.531186 4_2:-67142909 None:intergenic
AGGGTAAAGAATCCGCATGC+TGG 0.531498 4_2:+67145377 Msa0616890:three_prime_UTR
GCTCGAAAAGATTTAGTCAT+CGG 0.531541 4_2:+67142990 Msa0616890:CDS
ACCGTTGGTCTCAGGATACC+TGG 0.531650 4_2:+67141149 Msa0616890:CDS
GGAGAGTGTAGTTGCAAGGA+GGG 0.531892 4_2:-67140915 None:intergenic
ACAAGAGGAGCACGGATCAA+TGG 0.532220 4_2:-67144307 None:intergenic
CAAGGATAAAACAGTTTCTA+CGG 0.535630 4_2:+67145315 Msa0616890:three_prime_UTR
GATCTTAGAGATAATCTTGG+TGG 0.537887 4_2:+67143129 Msa0616890:CDS
TTTCATCCGTAACTTCCCTA+AGG 0.542168 4_2:-67142302 None:intergenic
CAGATGCAGAAGAAGGGAAG+GGG 0.543799 4_2:-67140955 None:intergenic
CCTCAAAGAGTTCAATGCAT+TGG 0.545821 4_2:+67142968 Msa0616890:CDS
CCTCACTATTTCACTAGCAC+TGG 0.547376 4_2:-67144572 None:intergenic
TAGTCACAGATGTTCCGTTA+GGG 0.547770 4_2:-67142718 None:intergenic
GGAGTGGTGGAGAGTGATGA+AGG 0.547929 4_2:-67140818 None:intergenic
ATCTTAGAGATAATCTTGGT+GGG 0.549550 4_2:+67143130 Msa0616890:CDS
CACAGTTCCAACTGCTCCTG+AGG 0.549791 4_2:+67141054 Msa0616890:CDS
AATTGTCGAGCTGTTCTCGT+TGG 0.550446 4_2:+67144696 Msa0616890:three_prime_UTR
CGTATGGAACAAACTGAAAG+TGG 0.551046 4_2:+67142921 Msa0616890:CDS
AGATGCAGAAGAAGGGAAGG+GGG 0.555276 4_2:-67140954 None:intergenic
CACACCAGTCTCTTACCGTA+TGG 0.556124 4_2:+67142905 Msa0616890:CDS
AGCTCAAGCATGGAAACTGT+GGG 0.565529 4_2:+67142841 Msa0616890:intron
CGTTGTTGTCAGCTCAAGCA+TGG 0.565807 4_2:+67142831 Msa0616890:intron
TCCCTGTTGCAAGGCCCTAA+CGG 0.566724 4_2:+67142704 Msa0616890:CDS
TGGAAAACGCACGTATGGCA+AGG 0.572643 4_2:+67144716 Msa0616890:three_prime_UTR
CTGTATTTGAGCTTCAAGAT+GGG 0.577139 4_2:+67144835 Msa0616890:three_prime_UTR
GCAGATGCAGAAGAAGGGAA+GGG 0.577572 4_2:-67140956 None:intergenic
GTAACAACCTCAGGAGCAGT+TGG 0.578338 4_2:-67141061 None:intergenic
CAGCTCAAGCATGGAAACTG+TGG 0.578820 4_2:+67142840 Msa0616890:intron
ACACATAACACAAGATTGGT+AGG 0.581055 4_2:+67145443 Msa0616890:three_prime_UTR
GAAGTATCATCCCTGTTGCA+AGG 0.589347 4_2:+67142695 Msa0616890:CDS
ATACTTAACTAATATAGGAA+AGG 0.590073 4_2:+67145544 Msa0616890:three_prime_UTR
GAACATTGATGATACCTGCC+AGG 0.590096 4_2:-67141167 None:intergenic
TGAAAGTATTGTTGGAGTGG+TGG 0.590643 4_2:-67140831 None:intergenic
TTCCATTCAGACAAGGTCAA+AGG 0.593150 4_2:+67141633 Msa0616890:CDS
GAAGAGCAGATGCAGAAGAA+GGG 0.595058 4_2:-67140961 None:intergenic
TTGGTCTCAGGATACCTGGC+AGG 0.596168 4_2:+67141153 Msa0616890:CDS
CAAAGGAGAGTGTAGTTGCA+AGG 0.596188 4_2:-67140919 None:intergenic
AGTAATCTAAGAAAGCATGC+AGG 0.596941 4_2:+67145470 Msa0616890:three_prime_UTR
CAACAGCTTGCTGGAACTGG+GGG 0.597395 4_2:-67144270 None:intergenic
CTGACACCAGCAGAATGAGC+AGG 0.598327 4_2:-67142369 None:intergenic
GTATTGGGATTAATATTGGA+CGG 0.602411 4_2:+67142345 Msa0616890:CDS
ATGGCGAGGTATGACATGAC+TGG 0.602836 4_2:+67142267 Msa0616890:CDS
TAACTAGATTAAATTAAACT+CGG 0.604609 4_2:+67140671 Msa0616890:five_prime_UTR
AAGATGAAGATGATGATGAT+GGG 0.608519 4_2:-67140858 None:intergenic
TTTCGGAGGAAGTAGAGAGA+GGG 0.615323 4_2:-67141003 None:intergenic
TTGAATCAATTGAAGTTCAG+CGG 0.615959 4_2:+67142868 Msa0616890:CDS
AACATCACGGCATGTTTCGG+AGG 0.617397 4_2:-67141017 None:intergenic
ATGCATTGAACTCTTTGAGG+CGG 0.622366 4_2:-67142965 None:intergenic
CACAAGGACATAAATGGCAA+CGG 0.622455 4_2:+67144900 Msa0616890:three_prime_UTR
TCCGTTAGGGCCTTGCAACA+GGG 0.624845 4_2:-67142705 None:intergenic
AAAAGTTCTCCAAGATGGCG+AGG 0.627849 4_2:+67142253 Msa0616890:intron
GTTTCGGAGGAAGTAGAGAG+AGG 0.629848 4_2:-67141004 None:intergenic
TTTCCTAAACGAAGGAGACA+CGG 0.632678 4_2:+67143647 Msa0616890:CDS
ACATGGCAGCTTCCAGCATG+CGG 0.635420 4_2:-67145389 None:intergenic
AAATGGAGACCATAGGCTGA+AGG 0.637284 4_2:+67142323 Msa0616890:CDS
GCTTCAAGATGGGTCTGGTG+TGG 0.637950 4_2:+67144845 Msa0616890:three_prime_UTR
TGAGCAATTCCATTCAGACA+AGG 0.642285 4_2:+67141626 Msa0616890:CDS
AATGAAGCGACTTCAAGACA+TGG 0.646610 4_2:+67143086 Msa0616890:CDS
GTATGTAACACCAAAGCACA+AGG 0.647978 4_2:+67144884 Msa0616890:three_prime_UTR
AGGAGAGTGTAGTTGCAAGG+AGG 0.651687 4_2:-67140916 None:intergenic
AAATGCAGTATGCTTCAGCA+AGG 0.653675 4_2:+67145297 Msa0616890:three_prime_UTR
GCAGTAATGAGATGAATGAG+AGG 0.659301 4_2:+67140591 Msa0616890:five_prime_UTR
CGGATGAAAATGGAGACCAT+AGG 0.660391 4_2:+67142316 Msa0616890:CDS
GCCAGGTATCCTGAGACCAA+CGG 0.663215 4_2:-67141150 None:intergenic
TATCTCGAAGCTCAACATCA+CGG 0.666685 4_2:-67141030 None:intergenic
ATGAAGCGACTTCAAGACAT+GGG 0.671799 4_2:+67143087 Msa0616890:CDS
AGATGAAGATGATGATGATG+GGG 0.692766 4_2:-67140857 None:intergenic
GCAGAAAGAAGATGAATGTG+TGG 0.715352 4_2:+67140789 Msa0616890:exon
ATTGGCAGTTAATAACACAG+AGG 0.766028 4_2:+67142652 Msa0616890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGAAAAAAATAAAAG+AGG - chr4_2:67145615-67145634 None:intergenic 10.0%
!! TAACTAGATTAAATTAAACT+CGG + chr4_2:67140671-67140690 Msa0616890:five_prime_UTR 15.0%
!!! TTTATGAATTTTTATTACGT+GGG + chr4_2:67141235-67141254 Msa0616890:intron 15.0%
!! CTGAAAACAAAAAATTATTA+GGG - chr4_2:67142458-67142477 None:intergenic 15.0%
!! ACTGAAAACAAAAAATTATT+AGG - chr4_2:67142459-67142478 None:intergenic 15.0%
!! ATACAATTATATTAACATCA+GGG - chr4_2:67142486-67142505 None:intergenic 15.0%
!! AATACAATTATATTAACATC+AGG - chr4_2:67142487-67142506 None:intergenic 15.0%
!!! ACTATATGTTTTAACATTTT+CGG + chr4_2:67142519-67142538 Msa0616890:intron 15.0%
!!! TAATTTTTCTCTTTGTAAAA+TGG + chr4_2:67144743-67144762 Msa0616890:intron 15.0%
!!! AAATTTTTGAGATATATACA+TGG - chr4_2:67145409-67145428 None:intergenic 15.0%
!! TAGTAATACTTAACTAATAT+AGG + chr4_2:67145539-67145558 Msa0616890:three_prime_UTR 15.0%
!!! AAAATGCAAAATTTTGATGT+AGG - chr4_2:67141194-67141213 None:intergenic 20.0%
!! CGTAATAAAAATTCATAAAC+TGG - chr4_2:67141234-67141253 None:intergenic 20.0%
!!! GTTTATGAATTTTTATTACG+TGG + chr4_2:67141234-67141253 Msa0616890:intron 20.0%
!! CACTTTATAATTCATATTGA+AGG + chr4_2:67141362-67141381 Msa0616890:intron 20.0%
!!! TTTTATTTGTTTCTTGGTTA+GGG + chr4_2:67142620-67142639 Msa0616890:intron 20.0%
!! TTAACGTTCATGTTTAATAT+TGG + chr4_2:67142805-67142824 Msa0616890:intron 20.0%
!! TTCGTTATATGAAAAAGAAA+AGG - chr4_2:67143372-67143391 None:intergenic 20.0%
!! TACATTGTGTAAAACATTAT+TGG + chr4_2:67143718-67143737 Msa0616890:intron 20.0%
!! ATTGAAGACAATAAAATTCA+AGG - chr4_2:67143837-67143856 None:intergenic 20.0%
!! TATTTATGTTAGACATTTAC+TGG + chr4_2:67143923-67143942 Msa0616890:intron 20.0%
!! TGATATATTCGATTAAATGT+TGG + chr4_2:67144089-67144108 Msa0616890:intron 20.0%
!!! GTTGATTTCTTTTTTACTAT+AGG + chr4_2:67144111-67144130 Msa0616890:intron 20.0%
!! TGTAAAAAAAATTCAGATGT+AGG - chr4_2:67144346-67144365 None:intergenic 20.0%
!!! TGATTGATTATTTTCTTTCA+GGG + chr4_2:67144801-67144820 Msa0616890:intron 20.0%
!! TAAAAAAACACAATTATACC+TGG - chr4_2:67144951-67144970 None:intergenic 20.0%
!! ACGACAATAATTTGAAAAAA+TGG + chr4_2:67145083-67145102 Msa0616890:intron 20.0%
!! ATACTTAACTAATATAGGAA+AGG + chr4_2:67145544-67145563 Msa0616890:three_prime_UTR 20.0%
!! CTACATAAAAATGTAAAACA+AGG - chr4_2:67145573-67145592 None:intergenic 20.0%
!! ATGAAAAAAATAAAAGAGGA+AGG - chr4_2:67145611-67145630 None:intergenic 20.0%
!! TCATGTATTCATATATCAAT+AGG - chr4_2:67145670-67145689 None:intergenic 20.0%
! TAGTTATCAACAAAAAATGC+TGG - chr4_2:67140657-67140676 None:intergenic 25.0%
!! AATTTTTATTACGTGGGTTT+TGG + chr4_2:67141241-67141260 Msa0616890:intron 25.0%
!!! CTTTAAGTTGGTAAAGTAAT+GGG - chr4_2:67141286-67141305 None:intergenic 25.0%
!!! ACTTTAAGTTGGTAAAGTAA+TGG - chr4_2:67141287-67141306 None:intergenic 25.0%
! CACTATTGAAAATTGAAGAA+TGG - chr4_2:67141735-67141754 None:intergenic 25.0%
! ATTAGATGTTTATGCCTTAT+GGG + chr4_2:67141783-67141802 Msa0616890:intron 25.0%
! AAAAAAATTCATCTGCATTG+CGG + chr4_2:67141881-67141900 Msa0616890:intron 25.0%
! TAGATGTCTCATGATAATAT+AGG - chr4_2:67142065-67142084 None:intergenic 25.0%
! GTTTCTTACTTAATGGTATA+TGG + chr4_2:67142214-67142233 Msa0616890:intron 25.0%
!!! TGTTTTAACATTTTCGGTAT+AGG + chr4_2:67142525-67142544 Msa0616890:intron 25.0%
!!! TCTTGCTTTTATTTGTTTCT+TGG + chr4_2:67142614-67142633 Msa0616890:intron 25.0%
!!! CTTTTATTTGTTTCTTGGTT+AGG + chr4_2:67142619-67142638 Msa0616890:intron 25.0%
!! TTTATTTGTTTCTTGGTTAG+GGG + chr4_2:67142621-67142640 Msa0616890:intron 25.0%
! CGTTAAAAAACTAAAAGCAA+AGG - chr4_2:67142791-67142810 None:intergenic 25.0%
!!! TCTTTGTTTTTGCTTTCTTA+CGG + chr4_2:67143034-67143053 Msa0616890:intron 25.0%
! AAGATCCAATACAAAATATG+AGG - chr4_2:67143115-67143134 None:intergenic 25.0%
! AAAATGAAGATAAACGCATA+AGG + chr4_2:67143258-67143277 Msa0616890:intron 25.0%
! GAAAAGGAAAAAGAAAAGAT+GGG - chr4_2:67143356-67143375 None:intergenic 25.0%
! AGAAAAGGAAAAAGAAAAGA+TGG - chr4_2:67143357-67143376 None:intergenic 25.0%
!! AATTGAAGAAATACTGACTA+TGG - chr4_2:67143449-67143468 None:intergenic 25.0%
!! TTTTCCTTAAAATGTGATGT+TGG + chr4_2:67143792-67143811 Msa0616890:intron 25.0%
! CATTTCTCCACTAATAATAT+TGG + chr4_2:67143871-67143890 Msa0616890:intron 25.0%
! CATTCAAATAAGAAAAAGAG+AGG - chr4_2:67144416-67144435 None:intergenic 25.0%
! GTTCATGTTATACTTATTTC+AGG + chr4_2:67144653-67144672 Msa0616890:intron 25.0%
!! CTGATTGATTATTTTCTTTC+AGG + chr4_2:67144800-67144819 Msa0616890:intron 25.0%
! TTCACAGTCAAATTGTAATA+TGG + chr4_2:67145212-67145231 Msa0616890:intron 25.0%
! ACATGACATTGTCAAATTAT+TGG + chr4_2:67145684-67145703 Msa0616890:three_prime_UTR 25.0%
! AAGATGAAGATGATGATGAT+GGG - chr4_2:67140861-67140880 None:intergenic 30.0%
AATGATGACTTTCTTGATAC+TGG + chr4_2:67141121-67141140 Msa0616890:CDS 30.0%
TAAAGCAGCAAACTTTAAGT+TGG - chr4_2:67141298-67141317 None:intergenic 30.0%
ATGTGATTATGTCTATGTGT+CGG + chr4_2:67141460-67141479 Msa0616890:intron 30.0%
!!! TCATTGATGTTGTTTTTGTG+TGG + chr4_2:67141547-67141566 Msa0616890:intron 30.0%
CATTAGATGTTTATGCCTTA+TGG + chr4_2:67141782-67141801 Msa0616890:intron 30.0%
AACACTGTCATATACAACTA+AGG + chr4_2:67141850-67141869 Msa0616890:intron 30.0%
GCAAAACAAGCAATAGTAAA+TGG - chr4_2:67142132-67142151 None:intergenic 30.0%
TTCTCGTGTTTCTTACTTAA+TGG + chr4_2:67142207-67142226 Msa0616890:intron 30.0%
!! CTTTTAAAAGTTCTCCAAGA+TGG + chr4_2:67142248-67142267 Msa0616890:intron 30.0%
! TGGTATTGGAATAAACCTTA+GGG + chr4_2:67142287-67142306 Msa0616890:CDS 30.0%
AATAAACCTTAGGGAAGTTA+CGG + chr4_2:67142296-67142315 Msa0616890:CDS 30.0%
!! GAAGGTATTGGGATTAATAT+TGG + chr4_2:67142341-67142360 Msa0616890:CDS 30.0%
GTATTGGGATTAATATTGGA+CGG + chr4_2:67142345-67142364 Msa0616890:CDS 30.0%
!! GAAGATTTTTGAAAATGAGC+AGG - chr4_2:67142585-67142604 None:intergenic 30.0%
! TTATTTGTTTCTTGGTTAGG+GGG + chr4_2:67142622-67142641 Msa0616890:intron 30.0%
GTTAATAACACAGAGGTAAA+TGG + chr4_2:67142659-67142678 Msa0616890:CDS 30.0%
ATTCTGATTCCAAGTTAGTT+TGG + chr4_2:67142753-67142772 Msa0616890:intron 30.0%
! TGAACTTCAATTGATTCAAC+AGG - chr4_2:67142867-67142886 None:intergenic 30.0%
TTGAATCAATTGAAGTTCAG+CGG + chr4_2:67142868-67142887 Msa0616890:CDS 30.0%
TTGGATCTTAGAGATAATCT+TGG + chr4_2:67143126-67143145 Msa0616890:CDS 30.0%
ATCTTAGAGATAATCTTGGT+GGG + chr4_2:67143130-67143149 Msa0616890:CDS 30.0%
TTCAAAGCAGAAACTAAGAA+TGG - chr4_2:67143195-67143214 None:intergenic 30.0%
TGGGAAAACAAAAACAATCT+TGG - chr4_2:67143337-67143356 None:intergenic 30.0%
GTTACATTCAATACAACACA+TGG - chr4_2:67143545-67143564 None:intergenic 30.0%
!!! TTTGCCCTTTTAATTTTTGC+AGG + chr4_2:67143602-67143621 Msa0616890:intron 30.0%
AAGCTTTGCAATTTCAATTC+CGG - chr4_2:67143628-67143647 None:intergenic 30.0%
! GTTTTACACAATGTATGCTT+TGG - chr4_2:67143713-67143732 None:intergenic 30.0%
TGTGTAAAACATTATTGGAG+AGG + chr4_2:67143723-67143742 Msa0616890:intron 30.0%
CATGAGACCAATATTATTAG+TGG - chr4_2:67143881-67143900 None:intergenic 30.0%
TGTTTAGTAGATAACCAGTT+AGG + chr4_2:67144062-67144081 Msa0616890:intron 30.0%
GAATATATCATCATCCTAAC+TGG - chr4_2:67144079-67144098 None:intergenic 30.0%
GTTAAAATTGACTGCTATCT+TGG + chr4_2:67144144-67144163 Msa0616890:intron 30.0%
!!! TCTTCAACTGTTGTTTTCAA+TGG + chr4_2:67144174-67144193 Msa0616890:intron 30.0%
!!! CTGTTGTTTTCAATGGATTT+TGG + chr4_2:67144181-67144200 Msa0616890:intron 30.0%
GTTTCTAATGTCATCATGAT+AGG + chr4_2:67144225-67144244 Msa0616890:intron 30.0%
! GGAAAAACTTTTACAACAAG+AGG - chr4_2:67144325-67144344 None:intergenic 30.0%
TAAGAAAAAGAGAGGAGATT+AGG - chr4_2:67144408-67144427 None:intergenic 30.0%
AATAATCAATCAGTACAGCT+TGG - chr4_2:67144793-67144812 None:intergenic 30.0%
!! TACTGCATTTTGAAAGATGT+TGG - chr4_2:67145287-67145306 None:intergenic 30.0%
CAAGGATAAAACAGTTTCTA+CGG + chr4_2:67145315-67145334 Msa0616890:three_prime_UTR 30.0%
ATAGACACATAACACAAGAT+TGG + chr4_2:67145439-67145458 Msa0616890:three_prime_UTR 30.0%
! AACAAAAAATGCTGGTTACG+TGG - chr4_2:67140649-67140668 None:intergenic 35.0%
!! TGTTGAAAGTATTGTTGGAG+TGG - chr4_2:67140837-67140856 None:intergenic 35.0%
! AGATGAAGATGATGATGATG+GGG - chr4_2:67140860-67140879 None:intergenic 35.0%
! GAAGATGAAGATGATGATGA+TGG - chr4_2:67140862-67140881 None:intergenic 35.0%
GAAAGCTTAGTGGGAATAAT+TGG - chr4_2:67140884-67140903 None:intergenic 35.0%
TATTGCTAGCTAAGTAGCTT+AGG + chr4_2:67141323-67141342 Msa0616890:intron 35.0%
CAAGTAAATGTCAGAGACTT+AGG - chr4_2:67141392-67141411 None:intergenic 35.0%
!!! TTGATGTTGTTTTTGTGTGG+TGG + chr4_2:67141550-67141569 Msa0616890:intron 35.0%
GGTGAAAGAAAACGTGTATA+AGG - chr4_2:67141700-67141719 None:intergenic 35.0%
!! TTTTCAATAGTGTTGCTCTG+TGG + chr4_2:67141743-67141762 Msa0616890:intron 35.0%
!! CAATTTACGCCATGTTTTAG+GGG - chr4_2:67141994-67142013 None:intergenic 35.0%
! CCAATTTACGCCATGTTTTA+GGG - chr4_2:67141995-67142014 None:intergenic 35.0%
! CTGGTATTGGAATAAACCTT+AGG + chr4_2:67142286-67142305 Msa0616890:CDS 35.0%
ATTGGCAGTTAATAACACAG+AGG + chr4_2:67142652-67142671 Msa0616890:CDS 35.0%
!! ATCTGTGACTATTCAGGTTT+TGG + chr4_2:67142730-67142749 Msa0616890:intron 35.0%
! CACTTTCAGTTTGTTCCATA+CGG - chr4_2:67142923-67142942 None:intergenic 35.0%
GCTCGAAAAGATTTAGTCAT+CGG + chr4_2:67142990-67143009 Msa0616890:CDS 35.0%
GATCTTAGAGATAATCTTGG+TGG + chr4_2:67143129-67143148 Msa0616890:CDS 35.0%
AAGAATGGTATAGGTAGACA+GGG - chr4_2:67143180-67143199 None:intergenic 35.0%
TAAGAATGGTATAGGTAGAC+AGG - chr4_2:67143181-67143200 None:intergenic 35.0%
GCAGAAACTAAGAATGGTAT+AGG - chr4_2:67143189-67143208 None:intergenic 35.0%
ACAAATGCTCAAAGTGAATG+TGG + chr4_2:67143404-67143423 Msa0616890:intron 35.0%
AGGGCAAACAAAACTGAATT+AGG - chr4_2:67143590-67143609 None:intergenic 35.0%
TCCTTAAAATGTGATGTTGG+AGG + chr4_2:67143795-67143814 Msa0616890:intron 35.0%
! ACCTCCAACATCACATTTTA+AGG - chr4_2:67143799-67143818 None:intergenic 35.0%
TCTTCACTCTGTACAGAAAA+GGG - chr4_2:67143975-67143994 None:intergenic 35.0%
ATCTTCACTCTGTACAGAAA+AGG - chr4_2:67143976-67143995 None:intergenic 35.0%
GTGTGAGCTAATCGATAAAA+TGG + chr4_2:67144025-67144044 Msa0616890:intron 35.0%
AAGAGAGGAGATTAGGAAAT+CGG - chr4_2:67144401-67144420 None:intergenic 35.0%
TACAGTATGTCGTTGTTTAG+TGG + chr4_2:67144474-67144493 Msa0616890:three_prime_UTR 35.0%
! CTTTTTGATCTGTATCATGC+AGG + chr4_2:67144528-67144547 Msa0616890:three_prime_UTR 35.0%
CTTGAAGCTCAAATACAGAT+TGG - chr4_2:67144833-67144852 None:intergenic 35.0%
TCTGTATTTGAGCTTCAAGA+TGG + chr4_2:67144834-67144853 Msa0616890:three_prime_UTR 35.0%
CTGTATTTGAGCTTCAAGAT+GGG + chr4_2:67144835-67144854 Msa0616890:three_prime_UTR 35.0%
CAATTATACCTGGAAGTTTC+TGG - chr4_2:67144941-67144960 None:intergenic 35.0%
ATGTAATCGAGTGTCAATGT+CGG + chr4_2:67145116-67145135 Msa0616890:intron 35.0%
! CAAATGCAATCTTTTGCTTC+TGG + chr4_2:67145344-67145363 Msa0616890:three_prime_UTR 35.0%
ACACATAACACAAGATTGGT+AGG + chr4_2:67145443-67145462 Msa0616890:three_prime_UTR 35.0%
! AGTAATCTAAGAAAGCATGC+AGG + chr4_2:67145470-67145489 Msa0616890:three_prime_UTR 35.0%
GCAGTAATGAGATGAATGAG+AGG + chr4_2:67140591-67140610 Msa0616890:five_prime_UTR 40.0%
ATGAGATGAATGAGAGGCTA+TGG + chr4_2:67140597-67140616 Msa0616890:five_prime_UTR 40.0%
GCAGAAAGAAGATGAATGTG+TGG + chr4_2:67140789-67140808 Msa0616890:exon 40.0%
!! TGAAAGTATTGTTGGAGTGG+TGG - chr4_2:67140834-67140853 None:intergenic 40.0%
!! TGGGGTGTTGAAAGTATTGT+TGG - chr4_2:67140842-67140861 None:intergenic 40.0%
TTGTGAAGGGAAAGCTTAGT+GGG - chr4_2:67140893-67140912 None:intergenic 40.0%
TATCTCGAAGCTCAACATCA+CGG - chr4_2:67141033-67141052 None:intergenic 40.0%
! TACCAATGAAGGACTTGTTC+AGG + chr4_2:67141081-67141100 Msa0616890:CDS 40.0%
TTCCTGAACAAGTCCTTCAT+TGG - chr4_2:67141086-67141105 None:intergenic 40.0%
!! TTTGGTTTGTAGCTTGGAGT+TGG + chr4_2:67141259-67141278 Msa0616890:intron 40.0%
! TTATGTCTATGTGTCGGTGT+TGG + chr4_2:67141466-67141485 Msa0616890:intron 40.0%
!! TTTGGTGTTTGTGTCTGTGT+CGG + chr4_2:67141496-67141515 Msa0616890:intron 40.0%
! GTTTTTGTGTGGTGGTTAGT+TGG + chr4_2:67141558-67141577 Msa0616890:intron 40.0%
TGAGCAATTCCATTCAGACA+AGG + chr4_2:67141626-67141645 Msa0616890:CDS 40.0%
TTCCATTCAGACAAGGTCAA+AGG + chr4_2:67141633-67141652 Msa0616890:CDS 40.0%
! TACACGTTTTCTTTCACCTG+AGG + chr4_2:67141702-67141721 Msa0616890:CDS 40.0%
AATATCAAGAATCGCGATCG+GGG - chr4_2:67141824-67141843 None:intergenic 40.0%
CAATATCAAGAATCGCGATC+GGG - chr4_2:67141825-67141844 None:intergenic 40.0%
GCAATATCAAGAATCGCGAT+CGG - chr4_2:67141826-67141845 None:intergenic 40.0%
TTGATCTAATACTGCAGCTG+CGG + chr4_2:67141933-67141952 Msa0616890:intron 40.0%
CCCTAAAACATGGCGTAAAT+TGG + chr4_2:67141992-67142011 Msa0616890:intron 40.0%
! GCCAATTTACGCCATGTTTT+AGG - chr4_2:67141996-67142015 None:intergenic 40.0%
AATTTCCAACTCAGACGACA+CGG - chr4_2:67142036-67142055 None:intergenic 40.0%
! AAGAAACACGAGAAGCACAA+TGG - chr4_2:67142201-67142220 None:intergenic 40.0%
AGGTATGACATGACTGGTAT+TGG + chr4_2:67142273-67142292 Msa0616890:CDS 40.0%
TTTCATCCGTAACTTCCCTA+AGG - chr4_2:67142305-67142324 None:intergenic 40.0%
AGGGAAGTTACGGATGAAAA+TGG + chr4_2:67142306-67142325 Msa0616890:CDS 40.0%
GACAACTCTACCAATTCACT+CGG + chr4_2:67142405-67142424 Msa0616890:intron 40.0%
AAGACATTAGCCGAGTGAAT+TGG - chr4_2:67142418-67142437 None:intergenic 40.0%
TGGTTAGGGGGATGAAATAT+TGG + chr4_2:67142634-67142653 Msa0616890:intron 40.0%
TAGTCACAGATGTTCCGTTA+GGG - chr4_2:67142721-67142740 None:intergenic 40.0%
ATAGTCACAGATGTTCCGTT+AGG - chr4_2:67142722-67142741 None:intergenic 40.0%
CGTATGGAACAAACTGAAAG+TGG + chr4_2:67142921-67142940 Msa0616890:CDS 40.0%
!! AAAGTGGTGCTGCTCATATT+GGG + chr4_2:67142937-67142956 Msa0616890:CDS 40.0%
! ATGCATTGAACTCTTTGAGG+CGG - chr4_2:67142968-67142987 None:intergenic 40.0%
CCAATGCATTGAACTCTTTG+AGG - chr4_2:67142971-67142990 None:intergenic 40.0%
CCTCAAAGAGTTCAATGCAT+TGG + chr4_2:67142968-67142987 Msa0616890:CDS 40.0%
AATGAAGCGACTTCAAGACA+TGG + chr4_2:67143086-67143105 Msa0616890:CDS 40.0%
ATGAAGCGACTTCAAGACAT+GGG + chr4_2:67143087-67143106 Msa0616890:CDS 40.0%
! GGGTGCCTCATATTTTGTAT+TGG + chr4_2:67143107-67143126 Msa0616890:CDS 40.0%
ATGTGTGTTCGTGCAGATTA+TGG + chr4_2:67143298-67143317 Msa0616890:intron 40.0%
AGTTGTGCTCAAACATGCTT+TGG + chr4_2:67143499-67143518 Msa0616890:intron 40.0%
CCGGCCTGCAAAAATTAAAA+GGG - chr4_2:67143609-67143628 None:intergenic 40.0%
!!! CCCTTTTAATTTTTGCAGGC+CGG + chr4_2:67143606-67143625 Msa0616890:intron 40.0%
TCCGGCCTGCAAAAATTAAA+AGG - chr4_2:67143610-67143629 None:intergenic 40.0%
! GCAAAGCTTTTCCTAAACGA+AGG + chr4_2:67143639-67143658 Msa0616890:CDS 40.0%
TTTCCTAAACGAAGGAGACA+CGG + chr4_2:67143647-67143666 Msa0616890:CDS 40.0%
TTCACTCTGTACAGAAAAGG+GGG - chr4_2:67143973-67143992 None:intergenic 40.0%
CTTCACTCTGTACAGAAAAG+GGG - chr4_2:67143974-67143993 None:intergenic 40.0%
! CTTTTACAACAAGAGGAGCA+CGG - chr4_2:67144318-67144337 None:intergenic 40.0%
AGAGAGGAGATTAGGAAATC+GGG - chr4_2:67144400-67144419 None:intergenic 40.0%
TCTGGTGTGGTTATAACTGT+TGG + chr4_2:67144858-67144877 Msa0616890:three_prime_UTR 40.0%
CTGGTGTGGTTATAACTGTT+GGG + chr4_2:67144859-67144878 Msa0616890:three_prime_UTR 40.0%
GTATGTAACACCAAAGCACA+AGG + chr4_2:67144884-67144903 Msa0616890:three_prime_UTR 40.0%
CCATTTATGTCCTTGTGCTT+TGG - chr4_2:67144897-67144916 None:intergenic 40.0%
CCAAAGCACAAGGACATAAA+TGG + chr4_2:67144894-67144913 Msa0616890:three_prime_UTR 40.0%
CACAAGGACATAAATGGCAA+CGG + chr4_2:67144900-67144919 Msa0616890:three_prime_UTR 40.0%
CTTTCTTTCTCTCCTTGTCT+CGG + chr4_2:67144977-67144996 Msa0616890:intron 40.0%
TTTCTTTCTCTCCTTGTCTC+GGG + chr4_2:67144978-67144997 Msa0616890:intron 40.0%
AAATGCAGTATGCTTCAGCA+AGG + chr4_2:67145297-67145316 Msa0616890:three_prime_UTR 40.0%
CATGCAGGAGTTCGTATTTA+AGG + chr4_2:67145485-67145504 Msa0616890:three_prime_UTR 40.0%
AAGTTGCTTCAGTTATGCTC+TGG - chr4_2:67145513-67145532 None:intergenic 40.0%
AGAGCATAACTGAAGCAACT+TGG + chr4_2:67145512-67145531 Msa0616890:three_prime_UTR 40.0%
GTTGTGAAGGGAAAGCTTAG+TGG - chr4_2:67140894-67140913 None:intergenic 45.0%
! CAAAGGAGAGTGTAGTTGCA+AGG - chr4_2:67140922-67140941 None:intergenic 45.0%
CTTGCAACTACACTCTCCTT+TGG + chr4_2:67140920-67140939 Msa0616890:CDS 45.0%
GAAGAGCAGATGCAGAAGAA+GGG - chr4_2:67140964-67140983 None:intergenic 45.0%
TGAAGAGCAGATGCAGAAGA+AGG - chr4_2:67140965-67140984 None:intergenic 45.0%
TTTCGGAGGAAGTAGAGAGA+GGG - chr4_2:67141006-67141025 None:intergenic 45.0%
CTCAACATCACGGCATGTTT+CGG - chr4_2:67141023-67141042 None:intergenic 45.0%
! CCTTCATTGGTAACAACCTC+AGG - chr4_2:67141073-67141092 None:intergenic 45.0%
CCTGAGGTTGTTACCAATGA+AGG + chr4_2:67141070-67141089 Msa0616890:CDS 45.0%
! AAGGACTTGTTCAGGAAGCT+TGG + chr4_2:67141089-67141108 Msa0616890:CDS 45.0%
! GAACATTGATGATACCTGCC+AGG - chr4_2:67141170-67141189 None:intergenic 45.0%
!!! GTGGGTTTTGGTTTGTAGCT+TGG + chr4_2:67141253-67141272 Msa0616890:intron 45.0%
!! TGGTGGTTAGTTGGTGCTAA+TGG + chr4_2:67141567-67141586 Msa0616890:intron 45.0%
TGCCTTTGACCTTGTCTGAA+TGG - chr4_2:67141638-67141657 None:intergenic 45.0%
AAGCGAATGCTGACCAGTTT+GGG + chr4_2:67141670-67141689 Msa0616890:CDS 45.0%
TGTATAAGGATCGCCCAAAC+TGG - chr4_2:67141686-67141705 None:intergenic 45.0%
! ACGTTTTCTTTCACCTGAGG+AGG + chr4_2:67141705-67141724 Msa0616890:CDS 45.0%
!! GAAGAATGGATTACCTCCTC+AGG - chr4_2:67141721-67141740 None:intergenic 45.0%
! TCAATAGTGTTGCTCTGTGG+AGG + chr4_2:67141746-67141765 Msa0616890:intron 45.0%
! TTTTACCGTGTCGTCTGAGT+TGG + chr4_2:67142028-67142047 Msa0616890:intron 45.0%
! GTGTCGTCTGAGTTGGAAAT+TGG + chr4_2:67142035-67142054 Msa0616890:intron 45.0%
AAAAGTTCTCCAAGATGGCG+AGG + chr4_2:67142253-67142272 Msa0616890:intron 45.0%
CGGATGAAAATGGAGACCAT+AGG + chr4_2:67142316-67142335 Msa0616890:CDS 45.0%
AAATGGAGACCATAGGCTGA+AGG + chr4_2:67142323-67142342 Msa0616890:CDS 45.0%
! AGACCATAGGCTGAAGGTAT+TGG + chr4_2:67142329-67142348 Msa0616890:CDS 45.0%
!! GACCATAGGCTGAAGGTATT+GGG + chr4_2:67142330-67142349 Msa0616890:CDS 45.0%
ATCCCAATACCTTCAGCCTA+TGG - chr4_2:67142335-67142354 None:intergenic 45.0%
! GAAGTATCATCCCTGTTGCA+AGG + chr4_2:67142695-67142714 Msa0616890:CDS 45.0%
CGGAACATCTGTGACTATTC+AGG + chr4_2:67142724-67142743 Msa0616890:CDS 45.0%
CTAAAAGCAAAGGCTAGAGC+AGG - chr4_2:67142781-67142800 None:intergenic 45.0%
AGCTCAAGCATGGAAACTGT+GGG + chr4_2:67142841-67142860 Msa0616890:intron 45.0%
TGAAGTTCAGCGGCAATTTG+TGG + chr4_2:67142878-67142897 Msa0616890:CDS 45.0%
TGTTCCATACGGTAAGAGAC+TGG - chr4_2:67142912-67142931 None:intergenic 45.0%
!! GAAAGTGGTGCTGCTCATAT+TGG + chr4_2:67142936-67142955 Msa0616890:CDS 45.0%
TTACCGTGTCTCCTTCGTTT+AGG - chr4_2:67143653-67143672 None:intergenic 45.0%
TGATAGGTCATCTACACTGC+TGG + chr4_2:67144241-67144260 Msa0616890:intron 45.0%
!! AACAACAGCTTGCTGGAACT+GGG - chr4_2:67144275-67144294 None:intergenic 45.0%
!! AAACAACAGCTTGCTGGAAC+TGG - chr4_2:67144276-67144295 None:intergenic 45.0%
! GTTCCAGCAAGCTGTTGTTT+CGG + chr4_2:67144276-67144295 Msa0616890:CDS 45.0%
TATCCGAAACAACAGCTTGC+TGG - chr4_2:67144282-67144301 None:intergenic 45.0%
CCTCACTATTTCACTAGCAC+TGG - chr4_2:67144575-67144594 None:intergenic 45.0%
CCAGTGCTAGTGAAATAGTG+AGG + chr4_2:67144572-67144591 Msa0616890:intron 45.0%
AATTGTCGAGCTGTTCTCGT+TGG + chr4_2:67144696-67144715 Msa0616890:three_prime_UTR 45.0%
TTTGAGCTTCAAGATGGGTC+TGG + chr4_2:67144840-67144859 Msa0616890:three_prime_UTR 45.0%
TTCTTTCTCTCCTTGTCTCG+GGG + chr4_2:67144979-67144998 Msa0616890:intron 45.0%
!! AAGCATTGGAGTTGCTACCA+TGG + chr4_2:67145003-67145022 Msa0616890:intron 45.0%
! AGCATTGGAGTTGCTACCAT+GGG + chr4_2:67145004-67145023 Msa0616890:intron 45.0%
ACAATCTAGTGCTAGTCCCA+TGG - chr4_2:67145023-67145042 None:intergenic 45.0%
CATCCCAAGCTGCAAATACA+GGG - chr4_2:67145257-67145276 None:intergenic 45.0%
TCATCCCAAGCTGCAAATAC+AGG - chr4_2:67145258-67145277 None:intergenic 45.0%
!! TGCAAGGAGGGTGTTGTGAA+GGG - chr4_2:67140906-67140925 None:intergenic 50.0%
!! TTGCAAGGAGGGTGTTGTGA+AGG - chr4_2:67140907-67140926 None:intergenic 50.0%
! GGAGAGTGTAGTTGCAAGGA+GGG - chr4_2:67140918-67140937 None:intergenic 50.0%
! AGGAGAGTGTAGTTGCAAGG+AGG - chr4_2:67140919-67140938 None:intergenic 50.0%
GGGGGAGAAGAATAAGCCAA+AGG - chr4_2:67140939-67140958 None:intergenic 50.0%
AGATGCAGAAGAAGGGAAGG+GGG - chr4_2:67140957-67140976 None:intergenic 50.0%
CAGATGCAGAAGAAGGGAAG+GGG - chr4_2:67140958-67140977 None:intergenic 50.0%
GCAGATGCAGAAGAAGGGAA+GGG - chr4_2:67140959-67140978 None:intergenic 50.0%
AGCAGATGCAGAAGAAGGGA+AGG - chr4_2:67140960-67140979 None:intergenic 50.0%
GTAGAGAGAGGGATTGGAAG+AGG - chr4_2:67140995-67141014 None:intergenic 50.0%
GAGGAAGTAGAGAGAGGGAT+TGG - chr4_2:67141001-67141020 None:intergenic 50.0%
GTTTCGGAGGAAGTAGAGAG+AGG - chr4_2:67141007-67141026 None:intergenic 50.0%
AACATCACGGCATGTTTCGG+AGG - chr4_2:67141020-67141039 None:intergenic 50.0%
GTAACAACCTCAGGAGCAGT+TGG - chr4_2:67141064-67141083 None:intergenic 50.0%
TTGATACTGGTCGCAACCGT+TGG + chr4_2:67141134-67141153 Msa0616890:CDS 50.0%
! CTGTGTCGGTGCTTCTTCAT+AGG + chr4_2:67141510-67141529 Msa0616890:intron 50.0%
CAAGCGAATGCTGACCAGTT+TGG + chr4_2:67141669-67141688 Msa0616890:CDS 50.0%
CTGTCTGTGCCCCTAAAACA+TGG + chr4_2:67141982-67142001 Msa0616890:intron 50.0%
CATGTCATACCTCGCCATCT+TGG - chr4_2:67142265-67142284 None:intergenic 50.0%
ATGGCGAGGTATGACATGAC+TGG + chr4_2:67142267-67142286 Msa0616890:CDS 50.0%
! TCATTCTGCTGGTGTCAGAC+AGG + chr4_2:67142374-67142393 Msa0616890:CDS 50.0%
GAGCAGGTGCCAAACTAACT+TGG - chr4_2:67142765-67142784 None:intergenic 50.0%
CGTTGTTGTCAGCTCAAGCA+TGG + chr4_2:67142831-67142850 Msa0616890:intron 50.0%
CAGCTCAAGCATGGAAACTG+TGG + chr4_2:67142840-67142859 Msa0616890:intron 50.0%
CACACCAGTCTCTTACCGTA+TGG + chr4_2:67142905-67142924 Msa0616890:CDS 50.0%
!! TAATCTTGGTGGGCTAGTGC+AGG + chr4_2:67143140-67143159 Msa0616890:CDS 50.0%
TCGTGCAGATTATGGCTGAG+AGG + chr4_2:67143306-67143325 Msa0616890:intron 50.0%
ACTCTGTACAGAAAAGGGGG+AGG - chr4_2:67143970-67143989 None:intergenic 50.0%
!! ACAACAGCTTGCTGGAACTG+GGG - chr4_2:67144274-67144293 None:intergenic 50.0%
! ACAAGAGGAGCACGGATCAA+TGG - chr4_2:67144310-67144329 None:intergenic 50.0%
CTCGTTGGAAAACGCACGTA+TGG + chr4_2:67144711-67144730 Msa0616890:three_prime_UTR 50.0%
TGGAAAACGCACGTATGGCA+AGG + chr4_2:67144716-67144735 Msa0616890:three_prime_UTR 50.0%
! CCTGGAAGTTTCTGGAAGTC+AGG - chr4_2:67144933-67144952 None:intergenic 50.0%
CCTGACTTCCAGAAACTTCC+AGG + chr4_2:67144930-67144949 Msa0616890:three_prime_UTR 50.0%
CCAAGCTGCAAATACAGGGA+GGG - chr4_2:67145253-67145272 None:intergenic 50.0%
CCTCCCTGTATTTGCAGCTT+GGG + chr4_2:67145251-67145270 Msa0616890:intron 50.0%
! TTGCTTCTGGTCTTCCAGCA+AGG + chr4_2:67145357-67145376 Msa0616890:three_prime_UTR 50.0%
! TGCTTCTGGTCTTCCAGCAA+GGG + chr4_2:67145358-67145377 Msa0616890:three_prime_UTR 50.0%
TGCGGATTCTTTACCCTTGC+TGG - chr4_2:67145374-67145393 None:intergenic 50.0%
AGGGTAAAGAATCCGCATGC+TGG + chr4_2:67145377-67145396 Msa0616890:three_prime_UTR 50.0%
! GGAGTGGTGGAGAGTGATGA+AGG - chr4_2:67140821-67140840 None:intergenic 55.0%
GAGAGAGGGATTGGAAGAGG+AGG - chr4_2:67140992-67141011 None:intergenic 55.0%
CACAGTTCCAACTGCTCCTG+AGG + chr4_2:67141054-67141073 Msa0616890:CDS 55.0%
! ACCGTTGGTCTCAGGATACC+TGG + chr4_2:67141149-67141168 Msa0616890:CDS 55.0%
GCCAGGTATCCTGAGACCAA+CGG - chr4_2:67141153-67141172 None:intergenic 55.0%
TTGGTCTCAGGATACCTGGC+AGG + chr4_2:67141153-67141172 Msa0616890:CDS 55.0%
!! GTCGGTGTTGGTGTCGAGTT+TGG + chr4_2:67141478-67141497 Msa0616890:intron 55.0%
TCAAGAATCGCGATCGGGGT+TGG - chr4_2:67141820-67141839 None:intergenic 55.0%
CTGACACCAGCAGAATGAGC+AGG - chr4_2:67142372-67142391 None:intergenic 55.0%
TCCCTGTTGCAAGGCCCTAA+CGG + chr4_2:67142704-67142723 Msa0616890:CDS 55.0%
TCCGTTAGGGCCTTGCAACA+GGG - chr4_2:67142708-67142727 None:intergenic 55.0%
TTCCGTTAGGGCCTTGCAAC+AGG - chr4_2:67142709-67142728 None:intergenic 55.0%
!! CAACAGCTTGCTGGAACTGG+GGG - chr4_2:67144273-67144292 None:intergenic 55.0%
GCTTCAAGATGGGTCTGGTG+TGG + chr4_2:67144845-67144864 Msa0616890:three_prime_UTR 55.0%
CCCTCCCTGTATTTGCAGCT+TGG + chr4_2:67145250-67145269 Msa0616890:intron 55.0%
CCCAAGCTGCAAATACAGGG+AGG - chr4_2:67145254-67145273 None:intergenic 55.0%
ACATGGCAGCTTCCAGCATG+CGG - chr4_2:67145392-67145411 None:intergenic 55.0%
! TGGTCGCAACCGTTGGTCTC+AGG + chr4_2:67141141-67141160 Msa0616890:CDS 60.0%
TGGCAAGGCAAGGGCCCATA+AGG - chr4_2:67141800-67141819 None:intergenic 60.0%
! GATCGGGGTTGGCAAGGCAA+GGG - chr4_2:67141809-67141828 None:intergenic 60.0%
! AATCGCGATCGGGGTTGGCA+AGG - chr4_2:67141815-67141834 None:intergenic 60.0%
GACGGTCCTGCTCATTCTGC+TGG + chr4_2:67142363-67142382 Msa0616890:CDS 60.0%
CCAATGCTTGCCCCGAGACA+AGG - chr4_2:67144992-67145011 None:intergenic 60.0%
CCTTGTCTCGGGGCAAGCAT+TGG + chr4_2:67144989-67145008 Msa0616890:intron 60.0%
! CGATCGGGGTTGGCAAGGCA+AGG - chr4_2:67141810-67141829 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 67140549 67145719 67140549 ID=Msa0616890;Name=Msa0616890
chr4_2 mRNA 67140549 67145719 67140549 ID=Msa0616890-mRNA-1;Parent=Msa0616890;Name=Msa0616890-mRNA-1;_AED=0.14;_eAED=0.14;_QI=251|1|1|1|1|0.90|11|849|388
chr4_2 exon 67140549 67141174 67140549 ID=Msa0616890-mRNA-1:exon:19113;Parent=Msa0616890-mRNA-1
chr4_2 exon 67141607 67141726 67141607 ID=Msa0616890-mRNA-1:exon:19114;Parent=Msa0616890-mRNA-1
chr4_2 exon 67142258 67142395 67142258 ID=Msa0616890-mRNA-1:exon:19115;Parent=Msa0616890-mRNA-1
chr4_2 exon 67142641 67142745 67142641 ID=Msa0616890-mRNA-1:exon:19116;Parent=Msa0616890-mRNA-1
chr4_2 exon 67142843 67143011 67142843 ID=Msa0616890-mRNA-1:exon:19117;Parent=Msa0616890-mRNA-1
chr4_2 exon 67143085 67143161 67143085 ID=Msa0616890-mRNA-1:exon:19118;Parent=Msa0616890-mRNA-1
chr4_2 exon 67143624 67143668 67143624 ID=Msa0616890-mRNA-1:exon:19119;Parent=Msa0616890-mRNA-1
chr4_2 exon 67144247 67144588 67144247 ID=Msa0616890-mRNA-1:exon:19120;Parent=Msa0616890-mRNA-1
chr4_2 exon 67144675 67144737 67144675 ID=Msa0616890-mRNA-1:exon:19121;Parent=Msa0616890-mRNA-1
chr4_2 exon 67144822 67144951 67144822 ID=Msa0616890-mRNA-1:exon:19122;Parent=Msa0616890-mRNA-1
chr4_2 exon 67145268 67145719 67145268 ID=Msa0616890-mRNA-1:exon:19123;Parent=Msa0616890-mRNA-1
chr4_2 five_prime_UTR 67140549 67140799 67140549 ID=Msa0616890-mRNA-1:five_prime_utr;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67140800 67141174 67140800 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67141607 67141726 67141607 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67142258 67142395 67142258 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67142641 67142745 67142641 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67142843 67143011 67142843 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67143085 67143161 67143085 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67143624 67143668 67143624 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 CDS 67144247 67144384 67144247 ID=Msa0616890-mRNA-1:cds;Parent=Msa0616890-mRNA-1
chr4_2 three_prime_UTR 67144385 67144588 67144385 ID=Msa0616890-mRNA-1:three_prime_utr;Parent=Msa0616890-mRNA-1
chr4_2 three_prime_UTR 67144675 67144737 67144675 ID=Msa0616890-mRNA-1:three_prime_utr;Parent=Msa0616890-mRNA-1
chr4_2 three_prime_UTR 67144822 67144951 67144822 ID=Msa0616890-mRNA-1:three_prime_utr;Parent=Msa0616890-mRNA-1
chr4_2 three_prime_UTR 67145268 67145719 67145268 ID=Msa0616890-mRNA-1:three_prime_utr;Parent=Msa0616890-mRNA-1
Gene Sequence

>Msa0616890

ATGAATGTGTGGCTAACACCTTCATCACTCTCCACCACTCCAACAATACTTTCAACACCCCATCATCATCATCTTCATCTTCCAATTATTCCCACTAAGCTTTCCCTTCACAACACCCTCCTTGCAACTACACTCTCCTTTGGCTTATTCTTCTCCCCCTTCCCTTCTTCTGCATCTGCTCTTCAATCACCTCCTCTTCCAATCCCTCTCTCTACTTCCTCCGAAACATGCCGTGATGTTGAGCTTCGAGATATCACAGTTCCAACTGCTCCTGAGGTTGTTACCAATGAAGGACTTGTTCAGGAAGCTTGGCAGATAGTTAATGATGACTTTCTTGATACTGGTCGCAACCGTTGGTCTCAGGATACCTGGCAGCTAAAGAAGAATGATATTTTGAGCAATTCCATTCAGACAAGGTCAAAGGCACACAATATCATCAAGCGAATGCTGACCAGTTTGGGCGATCCTTATACACGTTTTCTTTCACCTGAGGAGTTCTCCAAGATGGCGAGGTATGACATGACTGGTATTGGAATAAACCTTAGGGAAGTTACGGATGAAAATGGAGACCATAGGCTGAAGGTATTGGGATTAATATTGGACGGTCCTGCTCATTCTGCTGGTGTCAGACAGGGGGATGAAATATTGGCAGTTAATAACACAGAGGTAAATGGAAAATCAGCATTTGAAGTATCATCCCTGTTGCAAGGCCCTAACGGAACATCTGTGACTATTCAGCTCAAGCATGGAAACTGTGGGCCTGTTGAATCAATTGAAGTTCAGCGGCAATTTGTGGCTCGCACACCAGTCTCTTACCGTATGGAACAAACTGAAAGTGGTGCTGCTCATATTGGGTACATCCGCCTCAAAGAGTTCAATGCATTGGCTCGAAAAGATTTAGTCATCGCAATGAAGCGACTTCAAGACATGGGTGCCTCATATTTTGTATTGGATCTTAGAGATAATCTTGGTGGGCTAGTGCAGGCCGGAATTGAAATTGCAAAGCTTTTCCTAAACGAAGGAGACACGGTCATCTACACTGCTGGAAGAGACCCCCAGTTCCAGCAAGCTGTTGTTTCGGATACTTCACCATTGATCCGTGCTCCTCTTGTTGTAAAAGTTTTTCCTACATCTGAATTTTTTTTACAATTAAGTTTACGTCAATGA

Protein sequence

>Msa0616890

MNVWLTPSSLSTTPTILSTPHHHHLHLPIIPTKLSLHNTLLATTLSFGLFFSPFPSSASALQSPPLPIPLSTSSETCRDVELRDITVPTAPEVVTNEGLVQEAWQIVNDDFLDTGRNRWSQDTWQLKKNDILSNSIQTRSKAHNIIKRMLTSLGDPYTRFLSPEEFSKMARYDMTGIGINLREVTDENGDHRLKVLGLILDGPAHSAGVRQGDEILAVNNTEVNGKSAFEVSSLLQGPNGTSVTIQLKHGNCGPVESIEVQRQFVARTPVSYRMEQTESGAAHIGYIRLKEFNALARKDLVIAMKRLQDMGASYFVLDLRDNLGGLVQAGIEIAKLFLNEGDTVIYTAGRDPQFQQAVVSDTSPLIRAPLVVKVFPTSEFFLQLSLRQ*