AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0693050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693050 MtrunA17_Chr4g0043331 97.938 291 6 0 1 291 1 291 0.0 583
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0693050 AT4G26370.1 68.807 218 65 1 66 283 69 283 3.25e-104 306
Msa0693050 AT4G26370.2 60.000 115 43 1 66 180 69 180 1.74e-35 128
Msa0693050 AT4G26370.3 60.000 115 43 1 66 180 69 180 1.74e-35 128

Find 120 sgRNAs with CRISPR-Local

Find 393 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGGGTTTGGGAAGGAATT+TGG 0.119074 4_4:-61860967 None:intergenic
TGTTGAACCATTATTATTAT+AGG 0.182688 4_4:+61865801 Msa0693050:three_prime_UTR
TGAAGTAGCGGTGTTAATTT+TGG 0.202201 4_4:-61860985 None:intergenic
TTGGGTTTGGGAAGGAATTT+GGG 0.203019 4_4:-61860966 None:intergenic
GGAGAAAAGGAGCAATAATT+TGG 0.209267 4_4:-61866073 None:intergenic
ATTTGGAGGCATCAAATAAT+AGG 0.245346 4_4:+61865667 Msa0693050:CDS
ATTTCGTGTACCTGCCAATT+TGG 0.250481 4_4:-61863578 None:intergenic
GGGATAGTGATAGTGGGATT+TGG 0.259441 4_4:-61866052 None:intergenic
GGATAGTGATAGTGGGATTT+GGG 0.261084 4_4:-61866051 None:intergenic
TTATTATAGGTTTCTGCAAC+TGG 0.299436 4_4:+61865814 Msa0693050:three_prime_UTR
TCATCTGTTTCAACGATAAC+AGG 0.318092 4_4:-61861467 None:intergenic
ACAAAGTTATCCCACCAAAT+TGG 0.319429 4_4:+61863564 Msa0693050:CDS
GCAAAAGCGGTGGTTGAGTT+TGG 0.331587 4_4:-61860901 None:intergenic
AATCTGCTATATACCAGCTT+TGG 0.334078 4_4:-61863241 None:intergenic
TGGTTGCTGTCAGGGATAGA+TGG 0.336054 4_4:+61863519 Msa0693050:CDS
TATAATTTATGCTTCGTGTT+TGG 0.348060 4_4:+61861250 Msa0693050:CDS
GATTTCCCACAAGTTTATTA+CGG 0.351707 4_4:+61865893 Msa0693050:three_prime_UTR
GCAGCCCCTCGTATCATTAA+TGG 0.354885 4_4:+61865621 Msa0693050:CDS
TGCTTCGTGTTTGGAGGGAT+TGG 0.362504 4_4:+61861259 Msa0693050:CDS
AAGAAGCTAATGAACTTCTA+AGG 0.369066 4_4:+61861489 Msa0693050:CDS
AGAGAGCATTTCAGAGATAA+AGG 0.376806 4_4:-61861011 None:intergenic
GCAGAAACCTATAATAATAA+TGG 0.383326 4_4:-61865808 None:intergenic
ATCTGCTATATACCAGCTTT+GGG 0.384978 4_4:-61863240 None:intergenic
ATTTCCCACAAGTTTATTAC+GGG 0.392155 4_4:+61865894 Msa0693050:three_prime_UTR
TTTGGAGGCATCAAATAATA+GGG 0.397760 4_4:+61865668 Msa0693050:CDS
GAGAAAAGGAGCAATAATTT+GGG 0.402819 4_4:-61866072 None:intergenic
GAGTATAATCACATGAGTTT+CGG 0.405577 4_4:+61861437 Msa0693050:CDS
GTTAATGACGATTTGGTGTC+TGG 0.417195 4_4:-61865293 None:intergenic
GGAAACTATTGGTTGCTGTC+AGG 0.418304 4_4:+61863510 Msa0693050:CDS
GTACCTCGTTAATGACGATT+TGG 0.422385 4_4:-61865300 None:intergenic
ATTTAACAAGGACAAATTGT+TGG 0.439004 4_4:+61861415 Msa0693050:CDS
TGGAGGGATTGGACCCGGTT+CGG 0.439014 4_4:+61861270 Msa0693050:CDS
CAGGTTCACTAGGAAACTAT+TGG 0.442129 4_4:+61863499 Msa0693050:intron
AATATGCAATTATTACTAGT+TGG 0.448256 4_4:-61865965 None:intergenic
AATTTATGCTTCGTGTTTGG+AGG 0.449542 4_4:+61861253 Msa0693050:CDS
ATAATTTGGGATAGTGATAG+TGG 0.451378 4_4:-61866059 None:intergenic
GATAGTGGGATTTGGGATAG+TGG 0.452344 4_4:-61866044 None:intergenic
AGAAGTTGAAGGTGAAGAGA+GGG 0.454774 4_4:-61860874 None:intergenic
CGTTTCTCAAATAACCGAAC+CGG 0.455058 4_4:-61861284 None:intergenic
GTCTTTGTCGAGTGCTAAAG+TGG 0.463142 4_4:-61861042 None:intergenic
AGGTGAAGAGAGGGGAAGTA+AGG 0.465052 4_4:-61860865 None:intergenic
AAGAAGTTGAAGGTGAAGAG+AGG 0.465590 4_4:-61860875 None:intergenic
GGGATAACTTTGTTAATGAC+AGG 0.468047 4_4:-61863554 None:intergenic
ATTCAACTCGAGTCTGCAAT+TGG 0.472202 4_4:+61861515 Msa0693050:CDS
GCAATTATTACTAGTTGGAT+AGG 0.481035 4_4:-61865960 None:intergenic
TCGTGTACCTGCCAATTTGG+TGG 0.485420 4_4:-61863575 None:intergenic
GTAGGAGTTATGTTTGAAAG+TGG 0.491262 4_4:+61865848 Msa0693050:three_prime_UTR
GAAACTATTGGTTGCTGTCA+GGG 0.496002 4_4:+61863511 Msa0693050:CDS
ATAGTGGGATTTGGGATAGT+GGG 0.497089 4_4:-61866043 None:intergenic
TATTGTTATGAAATAATTGA+TGG 0.498347 4_4:+61865984 Msa0693050:three_prime_UTR
GTGTTTGGAGGGATTGGACC+CGG 0.500612 4_4:+61861265 Msa0693050:CDS
CGTGTACCTGCCAATTTGGT+GGG 0.500976 4_4:-61863574 None:intergenic
TTGCCTAAACTCGATAAAAC+CGG 0.503153 4_4:+61861107 Msa0693050:CDS
AGAGCTTTCTATTCTTCACT+TGG 0.503711 4_4:+61865243 Msa0693050:CDS
GGGGAAAAGCAATGGAAAGA+AGG 0.507289 4_4:-61866022 None:intergenic
GCATCCCGTAATAAACTTGT+GGG 0.507291 4_4:-61865898 None:intergenic
TGGTGGTTTAGTAGTGAAGA+GGG 0.509590 4_4:-61860927 None:intergenic
TAACTTATCAGACCAGCATA+GGG 0.513184 4_4:-61865772 None:intergenic
GGAAGTGAGAGTAGCGGTGG+TGG 0.515094 4_4:-61860944 None:intergenic
CTAACTTATCAGACCAGCAT+AGG 0.518019 4_4:-61865773 None:intergenic
CGGTTCGGTTATTTGAGAAA+CGG 0.523373 4_4:+61861285 Msa0693050:CDS
AGGCGGTGGATCTGGCTAAA+CGG 0.525821 4_4:+61865586 Msa0693050:intron
ATTTATGCTTCGTGTTTGGA+GGG 0.526272 4_4:+61861254 Msa0693050:CDS
AGCTCTAGAATCTTCCCTGC+TGG 0.531317 4_4:-61865226 None:intergenic
TGCATCCCGTAATAAACTTG+TGG 0.533013 4_4:-61865899 None:intergenic
CTGGCTAAACGGTTCTGTGA+TGG 0.535411 4_4:+61865597 Msa0693050:CDS
GCAAGTTCTCTAGCGGCTCT+CGG 0.536127 4_4:-61861143 None:intergenic
TATTTGATGCCTCCAAATCT+CGG 0.536490 4_4:-61865662 None:intergenic
AGTTTGGAAGAAGAAGTTGA+AGG 0.542605 4_4:-61860885 None:intergenic
TTGAGTAATATCCCCTATGC+TGG 0.546544 4_4:+61865760 Msa0693050:three_prime_UTR
GTCATATCTGCAGGTTCACT+AGG 0.549643 4_4:+61863489 Msa0693050:intron
GGTTGCTGTCAGGGATAGAT+GGG 0.555102 4_4:+61863520 Msa0693050:CDS
TCTACTCCACACTTCAACAA+TGG 0.555760 4_4:+61860836 Msa0693050:exon
TGGTTGATGAACTTTAGTCT+TGG 0.562941 4_4:+61865868 Msa0693050:three_prime_UTR
GCATTCCAGGAAGAACCAGC+AGG 0.565802 4_4:+61865211 Msa0693050:intron
CTCCCTCCATTGTTGAAGTG+TGG 0.566513 4_4:-61860842 None:intergenic
CTGCTATATACCAGCTTTGG+GGG 0.567625 4_4:-61863238 None:intergenic
GAAAAGCAATGGAAAGAAGG+TGG 0.573319 4_4:-61866019 None:intergenic
GAAGTTGAAGGTGAAGAGAG+GGG 0.577370 4_4:-61860873 None:intergenic
TATTATAGGTTTCTGCAACT+GGG 0.582646 4_4:+61865815 Msa0693050:three_prime_UTR
TGTTATGAAATAATTGATGG+TGG 0.583782 4_4:+61865987 Msa0693050:three_prime_UTR
AGTTATCCCACCAAATTGGC+AGG 0.586746 4_4:+61863568 Msa0693050:CDS
GATTGTTGAAAATATTGATG+TGG 0.586916 4_4:+61865735 Msa0693050:three_prime_UTR
TATAATCACATGAGTTTCGG+AGG 0.587444 4_4:+61861440 Msa0693050:CDS
CTCCACACTTCAACAATGGA+GGG 0.590137 4_4:+61860840 Msa0693050:exon
AAAAGCAATGGAAAGAAGGT+GGG 0.591281 4_4:-61866018 None:intergenic
AGTGTGGAGTAGATAGATAA+CGG 0.591828 4_4:-61860826 None:intergenic
GTGGTGGTTTAGTAGTGAAG+AGG 0.591941 4_4:-61860928 None:intergenic
TAGTGGGATTTGGGATAGTG+GGG 0.595991 4_4:-61866042 None:intergenic
TAATTTGGGATAGTGATAGT+GGG 0.596392 4_4:-61866058 None:intergenic
AGCAATGGAAAGAAGGTGGG+TGG 0.604838 4_4:-61866015 None:intergenic
TGGGTTTGGGAAGGAATTTG+GGG 0.610576 4_4:-61860965 None:intergenic
ACTCCACACTTCAACAATGG+AGG 0.611176 4_4:+61860839 Msa0693050:exon
TGGGGAAGTGAGAGTAGCGG+TGG 0.615693 4_4:-61860947 None:intergenic
CAACTGGGAAGATCATAAGT+AGG 0.620936 4_4:+61865830 Msa0693050:three_prime_UTR
GTGAAGAGGGGAAGCAAAAG+CGG 0.626097 4_4:-61860914 None:intergenic
GCAATGGAAAGAAGGTGGGT+GGG 0.628138 4_4:-61866014 None:intergenic
GGTGGTTTAGTAGTGAAGAG+GGG 0.629211 4_4:-61860926 None:intergenic
GACAGCCATTAATGATACGA+GGG 0.631693 4_4:-61865626 None:intergenic
GGTTGGTTATGAATTTAACA+AGG 0.642550 4_4:+61861403 Msa0693050:CDS
TCTGCTATATACCAGCTTTG+GGG 0.649992 4_4:-61863239 None:intergenic
TCTGTTTCAACGATAACAGG+TGG 0.649999 4_4:-61861464 None:intergenic
ATTTGGGGAAGTGAGAGTAG+CGG 0.651966 4_4:-61860950 None:intergenic
GGATAACTTTGTTAATGACA+GGG 0.657385 4_4:-61863553 None:intergenic
AGATAAAGGTGATGAAGTAG+CGG 0.660310 4_4:-61860997 None:intergenic
TCTCGGACTACAAAACCGAC+CGG 0.664343 4_4:-61861126 None:intergenic
ATAATCACATGAGTTTCGGA+GGG 0.671556 4_4:+61861441 Msa0693050:CDS
AGTGGGATTTGGGATAGTGG+GGG 0.671838 4_4:-61866041 None:intergenic
TTACAGAGCAAGTTCTCTAG+CGG 0.672676 4_4:-61861150 None:intergenic
GTTTCTCAAATAACCGAACC+GGG 0.676933 4_4:-61861283 None:intergenic
CATTCCAGGAAGAACCAGCA+GGG 0.678311 4_4:+61865212 Msa0693050:intron
TCTCTGAAATGCTCTCTCCG+TGG 0.679129 4_4:+61861017 Msa0693050:CDS
AGACAGCCATTAATGATACG+AGG 0.681753 4_4:-61865627 None:intergenic
AAACGGATGAATGAGCGTAG+AGG 0.681961 4_4:+61861302 Msa0693050:CDS
AACTTATCAGACCAGCATAG+GGG 0.689195 4_4:-61865771 None:intergenic
CTAAACTCGATAAAACCGGT+CGG 0.694768 4_4:+61861111 Msa0693050:CDS
CGAGTGCTAAAGTGGAACCA+CGG 0.698369 4_4:-61861034 None:intergenic
AAGAGGGGAAGCAAAAGCGG+TGG 0.698794 4_4:-61860911 None:intergenic
ACAGCCATTAATGATACGAG+GGG 0.715241 4_4:-61865625 None:intergenic
ACACCAAATCGTCATTAACG+AGG 0.730395 4_4:+61865297 Msa0693050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATCTTTTAAAAAATTCA+TGG - chr4_4:61862236-61862255 None:intergenic 10.0%
!!! ATTTATAGTGATTTTTATAT+TGG + chr4_4:61862794-61862813 Msa0693050:intron 10.0%
!! ATAATAAAAACAAAAAATTG+GGG - chr4_4:61864887-61864906 None:intergenic 10.0%
!! CAATAATAAAAACAAAAAAT+TGG - chr4_4:61864889-61864908 None:intergenic 10.0%
!!! CAATTTTTTGTTTTTATTAT+TGG + chr4_4:61864887-61864906 Msa0693050:intron 10.0%
!!! CTTTTTATTTTTATTTTTGT+AGG + chr4_4:61865347-61865366 Msa0693050:intron 10.0%
!! TCATTACTAATATATATGAT+TGG + chr4_4:61861616-61861635 Msa0693050:intron 15.0%
!!! TTAATTAAAACATTTTAAGC+TGG - chr4_4:61861963-61861982 None:intergenic 15.0%
!!! TAGTTATAAGGATTAATTTT+GGG - chr4_4:61861995-61862014 None:intergenic 15.0%
!! AGAAAATCATATTGTAATTA+GGG - chr4_4:61862431-61862450 None:intergenic 15.0%
!! AAGAAAATCATATTGTAATT+AGG - chr4_4:61862432-61862451 None:intergenic 15.0%
!! AATGTATGATTAATTGATTA+TGG + chr4_4:61863028-61863047 Msa0693050:intron 15.0%
!!! TATCTTATTTCATAGATTTT+TGG + chr4_4:61863675-61863694 Msa0693050:intron 15.0%
!!! TTGTTTTTATTATTGGATAA+TGG + chr4_4:61864894-61864913 Msa0693050:intron 15.0%
!!! ATATACATTTGTTAATTATG+TGG + chr4_4:61865028-61865047 Msa0693050:intron 15.0%
!! ATAAAAAAACTTATATACTG+TGG + chr4_4:61865549-61865568 Msa0693050:intron 15.0%
!! TATTGTTATGAAATAATTGA+TGG + chr4_4:61865984-61866003 Msa0693050:three_prime_UTR 15.0%
!!! AATGTGTTTGTTTTTTATAG+AGG + chr4_4:61861382-61861401 Msa0693050:intron 20.0%
!!! TTTCATTTGTTAATTGATTG+AGG + chr4_4:61861715-61861734 Msa0693050:intron 20.0%
!!! GTAGTTATAAGGATTAATTT+TGG - chr4_4:61861996-61862015 None:intergenic 20.0%
!! AATTAATCCTTATAACTACT+TGG + chr4_4:61861997-61862016 Msa0693050:intron 20.0%
!! TTCTTGATTCAACTTAAATT+TGG - chr4_4:61862261-61862280 None:intergenic 20.0%
!!! ACTATAAATTTTTGTTCTCA+TGG - chr4_4:61862783-61862802 None:intergenic 20.0%
!!! ATTGTTCTGTTTTCATTTTA+CGG + chr4_4:61862939-61862958 Msa0693050:intron 20.0%
!! ATTTATACAGACTTTAATAC+AGG + chr4_4:61862984-61863003 Msa0693050:intron 20.0%
!! TGAAATTATGTGACATAATA+AGG - chr4_4:61863087-61863106 None:intergenic 20.0%
!!! GAACTTTGAAATTCTAATTA+TGG - chr4_4:61863845-61863864 None:intergenic 20.0%
!!! AAAATAATAATGAGGTACTA+AGG - chr4_4:61864148-61864167 None:intergenic 20.0%
!! TGGTACTAAAAATAATAATG+AGG - chr4_4:61864156-61864175 None:intergenic 20.0%
!!! TATTATTTTTAGTACCAAAC+AGG + chr4_4:61864159-61864178 Msa0693050:intron 20.0%
!!! ATTATTTTTAGTACCAAACA+GGG + chr4_4:61864160-61864179 Msa0693050:intron 20.0%
!! ATCATTAAACAGTTATTGTT+GGG + chr4_4:61864357-61864376 Msa0693050:intron 20.0%
!! TAATAGAACATTGGAAATTT+AGG + chr4_4:61864406-61864425 Msa0693050:intron 20.0%
!! AGAATAAGAATGAAACTATT+TGG - chr4_4:61864438-61864457 None:intergenic 20.0%
!! TTAAACCAGTAAAAATACAA+AGG - chr4_4:61864777-61864796 None:intergenic 20.0%
!! AAAATGTTTATCAAATGTCA+AGG + chr4_4:61864943-61864962 Msa0693050:intron 20.0%
!! CATTATCATTACGTAAAATT+TGG - chr4_4:61865000-61865019 None:intergenic 20.0%
!!! TTTTTATTTTTGTAGGTGTT+AGG + chr4_4:61865354-61865373 Msa0693050:intron 20.0%
!!! TTTTATTTTTGTAGGTGTTA+GGG + chr4_4:61865355-61865374 Msa0693050:intron 20.0%
!!! ATGTCAATTTTTTCTACTAT+TGG + chr4_4:61865403-61865422 Msa0693050:intron 20.0%
!! TGTTGAACCATTATTATTAT+AGG + chr4_4:61865801-61865820 Msa0693050:three_prime_UTR 20.0%
!!! AGCATTATTTTCAAAATTCA+AGG + chr4_4:61865937-61865956 Msa0693050:three_prime_UTR 20.0%
!! AATATGCAATTATTACTAGT+TGG - chr4_4:61865968-61865987 None:intergenic 20.0%
!! GTATTTGGAATTAACGTTAA+CGG + chr4_4:61861209-61861228 Msa0693050:intron 25.0%
! TATAATTTATGCTTCGTGTT+TGG + chr4_4:61861250-61861269 Msa0693050:CDS 25.0%
!!! ATTGTTAACTGTTTTGGTTT+TGG + chr4_4:61861327-61861346 Msa0693050:intron 25.0%
!!! TGTTTGTTTTTTATAGAGGT+TGG + chr4_4:61861386-61861405 Msa0693050:intron 25.0%
! ATTTAACAAGGACAAATTGT+TGG + chr4_4:61861415-61861434 Msa0693050:CDS 25.0%
! TGCTCAAATTTGAACTTAAT+TGG + chr4_4:61861653-61861672 Msa0693050:intron 25.0%
!!! ATTTGAACTTAATTGGTCTT+TGG + chr4_4:61861660-61861679 Msa0693050:intron 25.0%
! ATCGGTCATTTCTTTATATA+TGG + chr4_4:61861690-61861709 Msa0693050:intron 25.0%
! TTGTTTATACATGACACATA+TGG + chr4_4:61862297-61862316 Msa0693050:intron 25.0%
! ATAATCCAAGTTCTATATGT+CGG - chr4_4:61862369-61862388 None:intergenic 25.0%
! AATCATATTGTAATTAGGGA+AGG - chr4_4:61862427-61862446 None:intergenic 25.0%
! AAACCTAAAAAAACCCTAAT+TGG - chr4_4:61862562-61862581 None:intergenic 25.0%
! TTTATATGTAGTGTACTGAA+TGG - chr4_4:61862641-61862660 None:intergenic 25.0%
! TTAATCTGTCATAGATATAC+AGG - chr4_4:61862965-61862984 None:intergenic 25.0%
! ATTATGTGACATAATAAGGA+AGG - chr4_4:61863083-61863102 None:intergenic 25.0%
! AGAATATAACAAGTCACAAA+AGG - chr4_4:61863186-61863205 None:intergenic 25.0%
!!! TATATAGCAGATTGATTTTG+AGG + chr4_4:61863251-61863270 Msa0693050:CDS 25.0%
! ATGCATGCATTATATGTAAA+GGG - chr4_4:61863287-61863306 None:intergenic 25.0%
! AAATGTTAGAAATGTTAGTG+AGG + chr4_4:61863413-61863432 Msa0693050:intron 25.0%
! AATGTTAGAAATGTTAGTGA+GGG + chr4_4:61863414-61863433 Msa0693050:intron 25.0%
!! ATCTATTGCTTCATTTTGTT+CGG - chr4_4:61863642-61863661 None:intergenic 25.0%
! AAAGTAGTCATTATAAAGCT+TGG - chr4_4:61863748-61863767 None:intergenic 25.0%
!! AAGCTTTATAATGACTACTT+TGG + chr4_4:61863747-61863766 Msa0693050:intron 25.0%
! TAATTATGGCATTGTTTCAA+AGG - chr4_4:61863831-61863850 None:intergenic 25.0%
! ATTGTTCAAGATAATGTGTA+AGG - chr4_4:61863986-61864005 None:intergenic 25.0%
!! TTAGGGATTATATCCTATTT+TGG - chr4_4:61864232-61864251 None:intergenic 25.0%
!!! TGATTTGTTAGTTGTTTCTT+AGG - chr4_4:61864257-61864276 None:intergenic 25.0%
!!! AGTGTTTTGTTGGATTTATT+GGG + chr4_4:61864334-61864353 Msa0693050:intron 25.0%
! GATCATTAAACAGTTATTGT+TGG + chr4_4:61864356-61864375 Msa0693050:intron 25.0%
! ATGATGAGTTAATAGAACAT+TGG + chr4_4:61864397-61864416 Msa0693050:intron 25.0%
! AGAAACAATCAACCTAAAAA+TGG - chr4_4:61864694-61864713 None:intergenic 25.0%
! TGTTTCTCAAATTGTCTTAT+CGG + chr4_4:61864707-61864726 Msa0693050:intron 25.0%
!!! AGATACCTTTGTATTTTTAC+TGG + chr4_4:61864769-61864788 Msa0693050:intron 25.0%
! ATAAAAACAAAAAATTGGGG+TGG - chr4_4:61864884-61864903 None:intergenic 25.0%
! TAAAATTATACAAGTGTGAG+TGG - chr4_4:61865137-61865156 None:intergenic 25.0%
!! TAGACAACTTTGTTTGTTAA+TGG + chr4_4:61865162-61865181 Msa0693050:intron 25.0%
! AACAAACAATATGCATACTA+TGG - chr4_4:61865188-61865207 None:intergenic 25.0%
! ATAGTATGCATATTGTTTGT+TGG + chr4_4:61865187-61865206 Msa0693050:intron 25.0%
!!! TTTATTTTTGTAGGTGTTAG+GGG + chr4_4:61865356-61865375 Msa0693050:intron 25.0%
! GATTGTTGAAAATATTGATG+TGG + chr4_4:61865735-61865754 Msa0693050:three_prime_UTR 25.0%
! GCAGAAACCTATAATAATAA+TGG - chr4_4:61865811-61865830 None:intergenic 25.0%
! TGTTATGAAATAATTGATGG+TGG + chr4_4:61865987-61866006 Msa0693050:three_prime_UTR 25.0%
!! GTGTACTGCATTTTAGTATT+TGG + chr4_4:61861194-61861213 Msa0693050:intron 30.0%
! GAGGTAATTGTTAACTGTTT+TGG + chr4_4:61861321-61861340 Msa0693050:intron 30.0%
! GGTTGGTTATGAATTTAACA+AGG + chr4_4:61861403-61861422 Msa0693050:CDS 30.0%
GAGTATAATCACATGAGTTT+CGG + chr4_4:61861437-61861456 Msa0693050:CDS 30.0%
AAGAAGCTAATGAACTTCTA+AGG + chr4_4:61861489-61861508 Msa0693050:CDS 30.0%
!! TTGGTCTTTGGAATGAAAAT+CGG + chr4_4:61861672-61861691 Msa0693050:intron 30.0%
TGTCCAAATGAATAAGACTT+AGG + chr4_4:61861803-61861822 Msa0693050:intron 30.0%
!! AGTCCTAAGTCTTATTCATT+TGG - chr4_4:61861809-61861828 None:intergenic 30.0%
AATGAATAAGACTTAGGACT+AGG + chr4_4:61861809-61861828 Msa0693050:intron 30.0%
ATGAATAAGACTTAGGACTA+GGG + chr4_4:61861810-61861829 Msa0693050:intron 30.0%
! TAAAACATTTTAAGCTGGTG+TGG - chr4_4:61861958-61861977 None:intergenic 30.0%
GAAAATCAACAAAGCAAAGA+GGG - chr4_4:61862085-61862104 None:intergenic 30.0%
TGAAAATCAACAAAGCAAAG+AGG - chr4_4:61862086-61862105 None:intergenic 30.0%
! AACTTATAATGACTGGTTGT+GGG - chr4_4:61862166-61862185 None:intergenic 30.0%
ACGACAGTTAACAATTACTA+CGG - chr4_4:61862333-61862352 None:intergenic 30.0%
TTTAACCGACATATAGAACT+TGG + chr4_4:61862361-61862380 Msa0693050:intron 30.0%
ACTATTAAGCGTGTGATAAA+TGG - chr4_4:61862457-61862476 None:intergenic 30.0%
TATAAATTGAACTCCTTGTG+TGG + chr4_4:61862655-61862674 Msa0693050:intron 30.0%
! CAACATCAAACTTTTTACCT+TGG + chr4_4:61862720-61862739 Msa0693050:intron 30.0%
AAAGTTTGATGTTGTCTCAT+GGG - chr4_4:61862748-61862767 None:intergenic 30.0%
AAAAGTTTGATGTTGTCTCA+TGG - chr4_4:61862749-61862768 None:intergenic 30.0%
! CAACATCAAACTTTTTACCT+TGG + chr4_4:61862720-61862739 Msa0693050:intron 30.0%
AGCAATTTGATGTTGTAAGT+TGG + chr4_4:61862843-61862862 Msa0693050:intron 30.0%
TCCTTAGAACTACTACTTTA+AGG - chr4_4:61862869-61862888 None:intergenic 30.0%
!! TTAAAGTAGTAGTTCTAAGG+AGG + chr4_4:61862868-61862887 Msa0693050:intron 30.0%
!! TAAAGTAGTAGTTCTAAGGA+GGG + chr4_4:61862869-61862888 Msa0693050:intron 30.0%
GATGCATGCATTATATGTAA+AGG - chr4_4:61863288-61863307 None:intergenic 30.0%
ATGTTAGAAATGTTAGTGAG+GGG + chr4_4:61863415-61863434 Msa0693050:intron 30.0%
! TATTAGCTTCCATTGGAATA+AGG - chr4_4:61863457-61863476 None:intergenic 30.0%
GGATAACTTTGTTAATGACA+GGG - chr4_4:61863556-61863575 None:intergenic 30.0%
!! CTAACTCAGAATTTTGAGTA+GGG - chr4_4:61863706-61863725 None:intergenic 30.0%
! TGCCACATTGACTAAAAATA+TGG - chr4_4:61863773-61863792 None:intergenic 30.0%
AAAGGATGATAAAGATAGCA+GGG - chr4_4:61863813-61863832 None:intergenic 30.0%
! AGACATAATTTGTCTAGAGT+TGG + chr4_4:61863875-61863894 Msa0693050:intron 30.0%
! GACATAATTTGTCTAGAGTT+GGG + chr4_4:61863876-61863895 Msa0693050:intron 30.0%
!! TAGGTTGAACAGTTTTAACA+TGG - chr4_4:61863920-61863939 None:intergenic 30.0%
CTGTTCAACCTAAATTTACA+AGG + chr4_4:61863928-61863947 Msa0693050:intron 30.0%
GCATATAAAACCAAAGTCAA+AGG - chr4_4:61864083-61864102 None:intergenic 30.0%
! TTATATGCTCTCTGAAGAAA+AGG + chr4_4:61864095-61864114 Msa0693050:intron 30.0%
! AATAATGAGGTACTAAGGAT+GGG - chr4_4:61864143-61864162 None:intergenic 30.0%
! TAATAATGAGGTACTAAGGA+TGG - chr4_4:61864144-61864163 None:intergenic 30.0%
AGAATAGGGTTACCTTAATA+AGG - chr4_4:61864191-61864210 None:intergenic 30.0%
TCTCATTCCAGTATAGAATA+GGG - chr4_4:61864205-61864224 None:intergenic 30.0%
ATCTCATTCCAGTATAGAAT+AGG - chr4_4:61864206-61864225 None:intergenic 30.0%
GGAATGAGATAATCCAAAAT+AGG + chr4_4:61864216-61864235 Msa0693050:intron 30.0%
!! TAGTTGTTTCTTAGGAGTTA+GGG - chr4_4:61864249-61864268 None:intergenic 30.0%
!! TTAGTTGTTTCTTAGGAGTT+AGG - chr4_4:61864250-61864269 None:intergenic 30.0%
AACCTTAATTACTGATCAGT+TGG + chr4_4:61864279-61864298 Msa0693050:intron 30.0%
GATCATGTTGGAAATAGTAA+TGG + chr4_4:61864306-61864325 Msa0693050:intron 30.0%
!! AATGGTATTGAGTGTTTTGT+TGG + chr4_4:61864324-61864343 Msa0693050:intron 30.0%
!! GAGTGTTTTGTTGGATTTAT+TGG + chr4_4:61864333-61864352 Msa0693050:intron 30.0%
TAAATGCAGTTAAATTCAGC+CGG + chr4_4:61864488-61864507 Msa0693050:intron 30.0%
!! TACAGTACACTACCATTTTT+AGG + chr4_4:61864679-61864698 Msa0693050:intron 30.0%
TTATCGGTCATCTAGTATAT+TGG + chr4_4:61864723-61864742 Msa0693050:intron 30.0%
!! ATAATGGATATGCGTACATA+AGG + chr4_4:61864910-61864929 Msa0693050:intron 30.0%
! GAGCTATATTTTCTGCTTAA+TGG - chr4_4:61865454-61865473 None:intergenic 30.0%
! AAGCAGAAAATATAGCTCTA+AGG + chr4_4:61865456-61865475 Msa0693050:intron 30.0%
!! AGCAGAAAATATAGCTCTAA+GGG + chr4_4:61865457-61865476 Msa0693050:intron 30.0%
!! ATTTGGAGGCATCAAATAAT+AGG + chr4_4:61865667-61865686 Msa0693050:CDS 30.0%
!! TTTGGAGGCATCAAATAATA+GGG + chr4_4:61865668-61865687 Msa0693050:CDS 30.0%
TTATTATAGGTTTCTGCAAC+TGG + chr4_4:61865814-61865833 Msa0693050:three_prime_UTR 30.0%
TATTATAGGTTTCTGCAACT+GGG + chr4_4:61865815-61865834 Msa0693050:three_prime_UTR 30.0%
GATTTCCCACAAGTTTATTA+CGG + chr4_4:61865893-61865912 Msa0693050:three_prime_UTR 30.0%
ATTTCCCACAAGTTTATTAC+GGG + chr4_4:61865894-61865913 Msa0693050:three_prime_UTR 30.0%
GCAATTATTACTAGTTGGAT+AGG - chr4_4:61865963-61865982 None:intergenic 30.0%
! TAATTTGGGATAGTGATAGT+GGG - chr4_4:61866061-61866080 None:intergenic 30.0%
! ATAATTTGGGATAGTGATAG+TGG - chr4_4:61866062-61866081 None:intergenic 30.0%
AGTGTGGAGTAGATAGATAA+CGG - chr4_4:61860829-61860848 None:intergenic 35.0%
AGTTTGGAAGAAGAAGTTGA+AGG - chr4_4:61860888-61860907 None:intergenic 35.0%
!!! TGTTAATTTTGGGTTTGGGA+AGG - chr4_4:61860977-61860996 None:intergenic 35.0%
!! GAAGTAGCGGTGTTAATTTT+GGG - chr4_4:61860987-61861006 None:intergenic 35.0%
!! TGAAGTAGCGGTGTTAATTT+TGG - chr4_4:61860988-61861007 None:intergenic 35.0%
AGATAAAGGTGATGAAGTAG+CGG - chr4_4:61861000-61861019 None:intergenic 35.0%
!! AGAGAGCATTTCAGAGATAA+AGG - chr4_4:61861014-61861033 None:intergenic 35.0%
TTGCCTAAACTCGATAAAAC+CGG + chr4_4:61861107-61861126 Msa0693050:CDS 35.0%
!! TTAACGGTCTTTGATTTTGC+AGG + chr4_4:61861225-61861244 Msa0693050:intron 35.0%
AATTTATGCTTCGTGTTTGG+AGG + chr4_4:61861253-61861272 Msa0693050:CDS 35.0%
ATTTATGCTTCGTGTTTGGA+GGG + chr4_4:61861254-61861273 Msa0693050:CDS 35.0%
!!! GTTTTGGTTTTGGTTGTTGT+TGG + chr4_4:61861337-61861356 Msa0693050:intron 35.0%
! TTTGGTTGTTGTTGGTATTG+TGG + chr4_4:61861345-61861364 Msa0693050:intron 35.0%
TATAATCACATGAGTTTCGG+AGG + chr4_4:61861440-61861459 Msa0693050:CDS 35.0%
ATAATCACATGAGTTTCGGA+GGG + chr4_4:61861441-61861460 Msa0693050:CDS 35.0%
TCATCTGTTTCAACGATAAC+AGG - chr4_4:61861470-61861489 None:intergenic 35.0%
TGAATAAGACTTAGGACTAG+GGG + chr4_4:61861811-61861830 Msa0693050:intron 35.0%
! ATGAAACTGTAGTTCTGTTG+CGG + chr4_4:61861840-61861859 Msa0693050:intron 35.0%
! GTGTAAAACTGTTTTACTCC+AGG - chr4_4:61861896-61861915 None:intergenic 35.0%
AGATAATATCGGATGGTGAT+TGG - chr4_4:61861925-61861944 None:intergenic 35.0%
GTGTGGCAAAGAGATAATAT+CGG - chr4_4:61861936-61861955 None:intergenic 35.0%
AGTAGAGCCAAGTAGTTATA+AGG - chr4_4:61862007-61862026 None:intergenic 35.0%
!!! ACTTGGCTCTACTGTATTTT+TGG + chr4_4:61862014-61862033 Msa0693050:intron 35.0%
TGAAAACGACACAGCAAATA+GGG - chr4_4:61862056-61862075 None:intergenic 35.0%
! CAACTTATAATGACTGGTTG+TGG - chr4_4:61862167-61862186 None:intergenic 35.0%
TGCTGACAACTTATAATGAC+TGG - chr4_4:61862173-61862192 None:intergenic 35.0%
ATTATAAGTTGTCAGCAGCA+CGG + chr4_4:61862176-61862195 Msa0693050:intron 35.0%
AGTTAACAATTACTACGGAG+GGG - chr4_4:61862328-61862347 None:intergenic 35.0%
CAGTTAACAATTACTACGGA+GGG - chr4_4:61862329-61862348 None:intergenic 35.0%
ACAGTTAACAATTACTACGG+AGG - chr4_4:61862330-61862349 None:intergenic 35.0%
GTAACATCTCCATAATCACT+AGG + chr4_4:61862482-61862501 Msa0693050:intron 35.0%
!!! TGGCCAATTAGGGTTTTTTT+AGG + chr4_4:61862556-61862575 Msa0693050:intron 35.0%
! TTTTGTTCTCATGGATACCA+AGG - chr4_4:61862774-61862793 None:intergenic 35.0%
! GCCTTAAAGTAGTAGTTCTA+AGG + chr4_4:61862865-61862884 Msa0693050:intron 35.0%
!! AAAGTAGTAGTTCTAAGGAG+GGG + chr4_4:61862870-61862889 Msa0693050:intron 35.0%
! ACCAAGTCAAAACTTTTCCT+GGG - chr4_4:61863128-61863147 None:intergenic 35.0%
! AACCAAGTCAAAACTTTTCC+TGG - chr4_4:61863129-61863148 None:intergenic 35.0%
ATCTGCTATATACCAGCTTT+GGG - chr4_4:61863243-61863262 None:intergenic 35.0%
AATCTGCTATATACCAGCTT+TGG - chr4_4:61863244-61863263 None:intergenic 35.0%
! GCTAGATTATTAGCTTCCAT+TGG - chr4_4:61863464-61863483 None:intergenic 35.0%
GGGATAACTTTGTTAATGAC+AGG - chr4_4:61863557-61863576 None:intergenic 35.0%
ACAAAGTTATCCCACCAAAT+TGG + chr4_4:61863564-61863583 Msa0693050:CDS 35.0%
!! CCTAACTCAGAATTTTGAGT+AGG - chr4_4:61863707-61863726 None:intergenic 35.0%
CCTACTCAAAATTCTGAGTT+AGG + chr4_4:61863704-61863723 Msa0693050:intron 35.0%
TCAAAATTCTGAGTTAGGTC+TGG + chr4_4:61863709-61863728 Msa0693050:intron 35.0%
!!! GGCCATATTTTTAGTCAATG+TGG + chr4_4:61863768-61863787 Msa0693050:intron 35.0%
AGATAGCAGGGGTTAAATAA+TGG - chr4_4:61863801-61863820 None:intergenic 35.0%
AAGGATGATAAAGATAGCAG+GGG - chr4_4:61863812-61863831 None:intergenic 35.0%
CAAAGGATGATAAAGATAGC+AGG - chr4_4:61863814-61863833 None:intergenic 35.0%
GTCTCAGACCTTGTAAATTT+AGG - chr4_4:61863939-61863958 None:intergenic 35.0%
GTGTAAGGAAAAGACATAAC+AGG - chr4_4:61863971-61863990 None:intergenic 35.0%
AATAAAAGTCTCTTCCCACT+AGG + chr4_4:61864003-61864022 Msa0693050:intron 35.0%
! AAACCTTTTTGTCACCTAGT+GGG - chr4_4:61864020-61864039 None:intergenic 35.0%
! AAAACCTTTTTGTCACCTAG+TGG - chr4_4:61864021-61864040 None:intergenic 35.0%
! ACTAAGGATGGGTTTATGTT+AGG - chr4_4:61864132-61864151 None:intergenic 35.0%
! TAATAAGGTGTTTCCCTGTT+TGG - chr4_4:61864176-61864195 None:intergenic 35.0%
AACAGGGAAACACCTTATTA+AGG + chr4_4:61864176-61864195 Msa0693050:intron 35.0%
AAGGTAACCCTATTCTATAC+TGG + chr4_4:61864195-61864214 Msa0693050:intron 35.0%
CACCAACTGATCAGTAATTA+AGG - chr4_4:61864284-61864303 None:intergenic 35.0%
TAATACAAGTGCGACTGTAA+AGG - chr4_4:61864622-61864641 None:intergenic 35.0%
AGTTGGAATTCTCTTTGACT+TGG - chr4_4:61864833-61864852 None:intergenic 35.0%
TTCCAACTAAAGTTCGAGTA+TGG + chr4_4:61864845-61864864 Msa0693050:intron 35.0%
TAAATAGTTACAAGCAGCGA+GGG - chr4_4:61865079-61865098 None:intergenic 35.0%
ATAAATAGTTACAAGCAGCG+AGG - chr4_4:61865080-61865099 None:intergenic 35.0%
AATTATACAAGTGTGAGTGG+AGG - chr4_4:61865134-61865153 None:intergenic 35.0%
AGAGCTTTCTATTCTTCACT+TGG + chr4_4:61865243-61865262 Msa0693050:CDS 35.0%
!!! CTGTGGTATGTTTGTTTTGA+AGG + chr4_4:61865566-61865585 Msa0693050:intron 35.0%
!!! TGGTATGTTTGTTTTGAAGG+CGG + chr4_4:61865569-61865588 Msa0693050:intron 35.0%
TATTTGATGCCTCCAAATCT+CGG - chr4_4:61865665-61865684 None:intergenic 35.0%
TAACTTATCAGACCAGCATA+GGG - chr4_4:61865775-61865794 None:intergenic 35.0%
GTAGGAGTTATGTTTGAAAG+TGG + chr4_4:61865848-61865867 Msa0693050:three_prime_UTR 35.0%
!! TGGTTGATGAACTTTAGTCT+TGG + chr4_4:61865868-61865887 Msa0693050:three_prime_UTR 35.0%
AAAAGCAATGGAAAGAAGGT+GGG - chr4_4:61866021-61866040 None:intergenic 35.0%
TCTACTCCACACTTCAACAA+TGG + chr4_4:61860836-61860855 Msa0693050:exon 40.0%
AGAAGTTGAAGGTGAAGAGA+GGG - chr4_4:61860877-61860896 None:intergenic 40.0%
AAGAAGTTGAAGGTGAAGAG+AGG - chr4_4:61860878-61860897 None:intergenic 40.0%
TGGTGGTTTAGTAGTGAAGA+GGG - chr4_4:61860930-61860949 None:intergenic 40.0%
TTGGGTTTGGGAAGGAATTT+GGG - chr4_4:61860969-61860988 None:intergenic 40.0%
! TTTGGGTTTGGGAAGGAATT+TGG - chr4_4:61860970-61860989 None:intergenic 40.0%
!!! GCGGTGTTAATTTTGGGTTT+GGG - chr4_4:61860981-61861000 None:intergenic 40.0%
!!! AGCGGTGTTAATTTTGGGTT+TGG - chr4_4:61860982-61861001 None:intergenic 40.0%
CTAAACTCGATAAAACCGGT+CGG + chr4_4:61861111-61861130 Msa0693050:CDS 40.0%
TTACAGAGCAAGTTCTCTAG+CGG - chr4_4:61861153-61861172 None:intergenic 40.0%
GTTTCTCAAATAACCGAACC+GGG - chr4_4:61861286-61861305 None:intergenic 40.0%
CGTTTCTCAAATAACCGAAC+CGG - chr4_4:61861287-61861306 None:intergenic 40.0%
!! CGGTTCGGTTATTTGAGAAA+CGG + chr4_4:61861285-61861304 Msa0693050:CDS 40.0%
TCTGTTTCAACGATAACAGG+TGG - chr4_4:61861467-61861486 None:intergenic 40.0%
ATTCAACTCGAGTCTGCAAT+TGG + chr4_4:61861515-61861534 Msa0693050:CDS 40.0%
GGCAAAGAGATAATATCGGA+TGG - chr4_4:61861932-61861951 None:intergenic 40.0%
GAAAACGACACAGCAAATAG+GGG - chr4_4:61862055-61862074 None:intergenic 40.0%
GTGAAAACGACACAGCAAAT+AGG - chr4_4:61862057-61862076 None:intergenic 40.0%
AATCAACAAAGCAAAGAGGG+AGG - chr4_4:61862082-61862101 None:intergenic 40.0%
! TAATGACTGGTTGTGGGTAA+TGG - chr4_4:61862160-61862179 None:intergenic 40.0%
TTATAAGTTGTCAGCAGCAC+GGG + chr4_4:61862177-61862196 Msa0693050:intron 40.0%
TTGTAATTAGGGAAGGTTGC+TGG - chr4_4:61862420-61862439 None:intergenic 40.0%
GCAAATGCTCCTAGTGATTA+TGG - chr4_4:61862494-61862513 None:intergenic 40.0%
!! TAATCACTAGGAGCATTTGC+TGG + chr4_4:61862494-61862513 Msa0693050:intron 40.0%
!! AATCACTAGGAGCATTTGCT+GGG + chr4_4:61862495-61862514 Msa0693050:intron 40.0%
GAAACATTGCAATGCTTGAG+TGG - chr4_4:61862909-61862928 None:intergenic 40.0%
ATACAGGAATCATCTGCTAC+TGG + chr4_4:61863000-61863019 Msa0693050:intron 40.0%
!!! TCCCAGGAAAAGTTTTGACT+TGG + chr4_4:61863124-61863143 Msa0693050:intron 40.0%
TCTGCTATATACCAGCTTTG+GGG - chr4_4:61863242-61863261 None:intergenic 40.0%
CAGGTTCACTAGGAAACTAT+TGG + chr4_4:61863499-61863518 Msa0693050:intron 40.0%
! GAAACTATTGGTTGCTGTCA+GGG + chr4_4:61863511-61863530 Msa0693050:CDS 40.0%
ATTTCGTGTACCTGCCAATT+TGG - chr4_4:61863581-61863600 None:intergenic 40.0%
AAATTGGCAGGTACACGAAA+TGG + chr4_4:61863580-61863599 Msa0693050:intron 40.0%
! TTCATTTTGTTCGGAATGCG+GGG - chr4_4:61863633-61863652 None:intergenic 40.0%
! CTTCATTTTGTTCGGAATGC+GGG - chr4_4:61863634-61863653 None:intergenic 40.0%
! GCTTCATTTTGTTCGGAATG+CGG - chr4_4:61863635-61863654 None:intergenic 40.0%
AAATTCTGAGTTAGGTCTGG+AGG + chr4_4:61863712-61863731 Msa0693050:intron 40.0%
CACTGTTCTACGTCAGTAAT+GGG - chr4_4:61864047-61864066 None:intergenic 40.0%
TCACTGTTCTACGTCAGTAA+TGG - chr4_4:61864048-61864067 None:intergenic 40.0%
!! TCAGTTGGTGTTGATCATGT+TGG + chr4_4:61864294-61864313 Msa0693050:intron 40.0%
ATGAAAGTGATCGCAGTCTT+GGG - chr4_4:61864558-61864577 None:intergenic 40.0%
AATGAAAGTGATCGCAGTCT+TGG - chr4_4:61864559-61864578 None:intergenic 40.0%
CTGTACTATGCAGTATGCAA+GGG - chr4_4:61864664-61864683 None:intergenic 40.0%
ACTGTACTATGCAGTATGCA+AGG - chr4_4:61864665-61864684 None:intergenic 40.0%
AGCCATACTCGAACTTTAGT+TGG - chr4_4:61864850-61864869 None:intergenic 40.0%
!! CGTAAAATTTGGTGTAGCAG+TGG - chr4_4:61864989-61865008 None:intergenic 40.0%
! ATTGTTTGTTGGTGCATTCC+AGG + chr4_4:61865198-61865217 Msa0693050:intron 40.0%
!! GTTAATGACGATTTGGTGTC+TGG - chr4_4:61865296-61865315 None:intergenic 40.0%
ACACCAAATCGTCATTAACG+AGG + chr4_4:61865297-61865316 Msa0693050:CDS 40.0%
GTACCTCGTTAATGACGATT+TGG - chr4_4:61865303-61865322 None:intergenic 40.0%
!!! TATGTTTGTTTTGAAGGCGG+TGG + chr4_4:61865572-61865591 Msa0693050:intron 40.0%
ACAGCCATTAATGATACGAG+GGG - chr4_4:61865628-61865647 None:intergenic 40.0%
GACAGCCATTAATGATACGA+GGG - chr4_4:61865629-61865648 None:intergenic 40.0%
AGACAGCCATTAATGATACG+AGG - chr4_4:61865630-61865649 None:intergenic 40.0%
! ACGCACATTTTACCGAGATT+TGG + chr4_4:61865650-61865669 Msa0693050:CDS 40.0%
! CACATTTTACCGAGATTTGG+AGG + chr4_4:61865653-61865672 Msa0693050:CDS 40.0%
TTGAGTAATATCCCCTATGC+TGG + chr4_4:61865760-61865779 Msa0693050:three_prime_UTR 40.0%
AACTTATCAGACCAGCATAG+GGG - chr4_4:61865774-61865793 None:intergenic 40.0%
CTAACTTATCAGACCAGCAT+AGG - chr4_4:61865776-61865795 None:intergenic 40.0%
CAACTGGGAAGATCATAAGT+AGG + chr4_4:61865830-61865849 Msa0693050:three_prime_UTR 40.0%
GCATCCCGTAATAAACTTGT+GGG - chr4_4:61865901-61865920 None:intergenic 40.0%
TGCATCCCGTAATAAACTTG+TGG - chr4_4:61865902-61865921 None:intergenic 40.0%
GAAAAGCAATGGAAAGAAGG+TGG - chr4_4:61866022-61866041 None:intergenic 40.0%
! ATAGTGGGATTTGGGATAGT+GGG - chr4_4:61866046-61866065 None:intergenic 40.0%
!! GGATAGTGATAGTGGGATTT+GGG - chr4_4:61866054-61866073 None:intergenic 40.0%
ACTCCACACTTCAACAATGG+AGG + chr4_4:61860839-61860858 Msa0693050:exon 45.0%
CTCCACACTTCAACAATGGA+GGG + chr4_4:61860840-61860859 Msa0693050:exon 45.0%
GAAGTTGAAGGTGAAGAGAG+GGG - chr4_4:61860876-61860895 None:intergenic 45.0%
GGTGGTTTAGTAGTGAAGAG+GGG - chr4_4:61860929-61860948 None:intergenic 45.0%
GTGGTGGTTTAGTAGTGAAG+AGG - chr4_4:61860931-61860950 None:intergenic 45.0%
ATTTGGGGAAGTGAGAGTAG+CGG - chr4_4:61860953-61860972 None:intergenic 45.0%
TGGGTTTGGGAAGGAATTTG+GGG - chr4_4:61860968-61860987 None:intergenic 45.0%
GTCTTTGTCGAGTGCTAAAG+TGG - chr4_4:61861045-61861064 None:intergenic 45.0%
!! CGACCGGTTTTATCGAGTTT+AGG - chr4_4:61861113-61861132 None:intergenic 45.0%
AAACGGATGAATGAGCGTAG+AGG + chr4_4:61861302-61861321 Msa0693050:CDS 45.0%
! GTTTTACTCCAGGCTGCAAT+TGG - chr4_4:61861886-61861905 None:intergenic 45.0%
! CATTTTAAGCTGGTGTGGTG+TGG - chr4_4:61861953-61861972 None:intergenic 45.0%
GTGATTGTGTACAGCAGTGA+GGG - chr4_4:61862115-61862134 None:intergenic 45.0%
TAATATCAGGCTGCCACACA+AGG - chr4_4:61862671-61862690 None:intergenic 45.0%
CGTAGTGCAGCTGTAATATC+AGG - chr4_4:61862684-61862703 None:intergenic 45.0%
ATGTTGTCTCATGGGTACCA+AGG - chr4_4:61862740-61862759 None:intergenic 45.0%
! TAAGGAGGGGTACATCCATA+TGG + chr4_4:61862883-61862902 Msa0693050:intron 45.0%
ATGACAGAAGTCTTTGTCCC+AGG + chr4_4:61863108-61863127 Msa0693050:intron 45.0%
! CTGCTATATACCAGCTTTGG+GGG - chr4_4:61863241-61863260 None:intergenic 45.0%
CCATTGGAATAAGGAGCTGA+GGG - chr4_4:61863448-61863467 None:intergenic 45.0%
TCCATTGGAATAAGGAGCTG+AGG - chr4_4:61863449-61863468 None:intergenic 45.0%
TAGCACTGTGTCATATCTGC+AGG + chr4_4:61863480-61863499 Msa0693050:intron 45.0%
GTCATATCTGCAGGTTCACT+AGG + chr4_4:61863489-61863508 Msa0693050:intron 45.0%
! GGAAACTATTGGTTGCTGTC+AGG + chr4_4:61863510-61863529 Msa0693050:CDS 45.0%
AGTTATCCCACCAAATTGGC+AGG + chr4_4:61863568-61863587 Msa0693050:CDS 45.0%
! TCATTTTGTTCGGAATGCGG+GGG - chr4_4:61863632-61863651 None:intergenic 45.0%
CTTCCCACTAGGTGACAAAA+AGG + chr4_4:61864014-61864033 Msa0693050:intron 45.0%
TGACGTAGAACAGTGATCCT+AGG + chr4_4:61864052-61864071 Msa0693050:intron 45.0%
GACGTAGAACAGTGATCCTA+GGG + chr4_4:61864053-61864072 Msa0693050:intron 45.0%
!! CAAAGTCAAAGGAGTACCCT+AGG - chr4_4:61864072-61864091 None:intergenic 45.0%
! CTAGGGTACTCCTTTGACTT+TGG + chr4_4:61864070-61864089 Msa0693050:intron 45.0%
! TTTAGTGACTTGCACTCAGC+CGG - chr4_4:61864510-61864529 None:intergenic 45.0%
! TCGAGTATGGCTTGTAACCA+AGG + chr4_4:61864858-61864877 Msa0693050:intron 45.0%
ACAAAAAATTGGGGTGGCCT+TGG - chr4_4:61864878-61864897 None:intergenic 45.0%
AGGTGTGTGTGTGTATGCTA+GGG - chr4_4:61865114-61865133 None:intergenic 45.0%
GGGGAAAAGCAATGGAAAGA+AGG - chr4_4:61866025-61866044 None:intergenic 45.0%
! TAGTGGGATTTGGGATAGTG+GGG - chr4_4:61866045-61866064 None:intergenic 45.0%
!! GATAGTGGGATTTGGGATAG+TGG - chr4_4:61866047-61866066 None:intergenic 45.0%
!! GGGATAGTGATAGTGGGATT+TGG - chr4_4:61866055-61866074 None:intergenic 45.0%
!! AATAATAAAAACAAAAAATT+GGG - chr4_4:61864888-61864907 None:intergenic 5.0%
CTCCCTCCATTGTTGAAGTG+TGG - chr4_4:61860845-61860864 None:intergenic 50.0%
AGGTGAAGAGAGGGGAAGTA+AGG - chr4_4:61860868-61860887 None:intergenic 50.0%
GCAAAAGCGGTGGTTGAGTT+TGG - chr4_4:61860904-61860923 None:intergenic 50.0%
GTGAAGAGGGGAAGCAAAAG+CGG - chr4_4:61860917-61860936 None:intergenic 50.0%
!! TCTCTGAAATGCTCTCTCCG+TGG + chr4_4:61861017-61861036 Msa0693050:CDS 50.0%
CGAGTGCTAAAGTGGAACCA+CGG - chr4_4:61861037-61861056 None:intergenic 50.0%
TCTCGGACTACAAAACCGAC+CGG - chr4_4:61861129-61861148 None:intergenic 50.0%
TGCTTCGTGTTTGGAGGGAT+TGG + chr4_4:61861259-61861278 Msa0693050:CDS 50.0%
AAGACTTAGGACTAGGGGTG+TGG + chr4_4:61861816-61861835 Msa0693050:intron 50.0%
GAAGTATGCCAATTGCAGCC+TGG + chr4_4:61861875-61861894 Msa0693050:intron 50.0%
!!! TGTATTTTTGGCCCTCCCAC+AGG + chr4_4:61862026-61862045 Msa0693050:intron 50.0%
!!! GTATTTTTGGCCCTCCCACA+GGG + chr4_4:61862027-61862046 Msa0693050:intron 50.0%
CAACAAAGCAAAGAGGGAGG+TGG - chr4_4:61862079-61862098 None:intergenic 50.0%
ATTGTGTACAGCAGTGAGGG+AGG - chr4_4:61862112-61862131 None:intergenic 50.0%
GGTGATTGTGTACAGCAGTG+AGG - chr4_4:61862116-61862135 None:intergenic 50.0%
CCAATGGGTAGTCGAGATGA+GGG - chr4_4:61862137-61862156 None:intergenic 50.0%
! GGTTGTGGGTAATGGCCAAT+GGG - chr4_4:61862152-61862171 None:intergenic 50.0%
! TGGTTGTGGGTAATGGCCAA+TGG - chr4_4:61862153-61862172 None:intergenic 50.0%
TTTGCTGGGACGTGAGAACT+AGG + chr4_4:61862509-61862528 Msa0693050:intron 50.0%
GATGACGATGAACTGCGTGA+GGG + chr4_4:61862531-61862550 Msa0693050:intron 50.0%
!! CGTGAGGGATTGGCCAATTA+GGG + chr4_4:61862546-61862565 Msa0693050:intron 50.0%
TACAGCTGCACTACGTGATC+TGG + chr4_4:61862689-61862708 Msa0693050:intron 50.0%
TGGTTCTCACTGCAGCAGTT+TGG + chr4_4:61862814-61862833 Msa0693050:intron 50.0%
GCAATGCTTGAGTGGCCATA+TGG - chr4_4:61862901-61862920 None:intergenic 50.0%
GCTGCAAGGACTTCTTCTTC+TGG - chr4_4:61863217-61863236 None:intergenic 50.0%
CCCTCAGCTCCTTATTCCAA+TGG + chr4_4:61863445-61863464 Msa0693050:intron 50.0%
TGGTTGCTGTCAGGGATAGA+TGG + chr4_4:61863519-61863538 Msa0693050:CDS 50.0%
GGTTGCTGTCAGGGATAGAT+GGG + chr4_4:61863520-61863539 Msa0693050:CDS 50.0%
CGTGTACCTGCCAATTTGGT+GGG - chr4_4:61863577-61863596 None:intergenic 50.0%
TCGTGTACCTGCCAATTTGG+TGG - chr4_4:61863578-61863597 None:intergenic 50.0%
! CATTTTGTTCGGAATGCGGG+GGG - chr4_4:61863631-61863650 None:intergenic 50.0%
GAGGTGTGTGTGTGTATGCT+AGG - chr4_4:61865115-61865134 None:intergenic 50.0%
CATTCCAGGAAGAACCAGCA+GGG + chr4_4:61865212-61865231 Msa0693050:intron 50.0%
!! AGCTCTAGAATCTTCCCTGC+TGG - chr4_4:61865229-61865248 None:intergenic 50.0%
!!! TGTTTTGAAGGCGGTGGATC+TGG + chr4_4:61865578-61865597 Msa0693050:intron 50.0%
CTGGCTAAACGGTTCTGTGA+TGG + chr4_4:61865597-61865616 Msa0693050:CDS 50.0%
GCAGCCCCTCGTATCATTAA+TGG + chr4_4:61865621-61865640 Msa0693050:CDS 50.0%
GCAATGGAAAGAAGGTGGGT+GGG - chr4_4:61866017-61866036 None:intergenic 50.0%
AGCAATGGAAAGAAGGTGGG+TGG - chr4_4:61866018-61866037 None:intergenic 50.0%
!! GGATAGTGGGGGAAAAGCAA+TGG - chr4_4:61866033-61866052 None:intergenic 50.0%
! AGTGGGATTTGGGATAGTGG+GGG - chr4_4:61866044-61866063 None:intergenic 50.0%
AAGAGGGGAAGCAAAAGCGG+TGG - chr4_4:61860914-61860933 None:intergenic 55.0%
GCAAGTTCTCTAGCGGCTCT+CGG - chr4_4:61861146-61861165 None:intergenic 55.0%
GTGTTTGGAGGGATTGGACC+CGG + chr4_4:61861265-61861284 Msa0693050:CDS 55.0%
!! AGCAAATAGGGGTGCCCTGT+GGG - chr4_4:61862044-61862063 None:intergenic 55.0%
CCCTCATCTCGACTACCCAT+TGG + chr4_4:61862134-61862153 Msa0693050:intron 55.0%
GCCAATGGGTAGTCGAGATG+AGG - chr4_4:61862138-61862157 None:intergenic 55.0%
GGATGACGATGAACTGCGTG+AGG + chr4_4:61862530-61862549 Msa0693050:intron 55.0%
CGATGAACTGCGTGAGGGAT+TGG + chr4_4:61862536-61862555 Msa0693050:intron 55.0%
!! GCGTGAGGGATTGGCCAATT+AGG + chr4_4:61862545-61862564 Msa0693050:intron 55.0%
TTACAAGCAGCGAGGGAGCT+TGG - chr4_4:61865072-61865091 None:intergenic 55.0%
GCATTCCAGGAAGAACCAGC+AGG + chr4_4:61865211-61865230 Msa0693050:intron 55.0%
!! TCTTCCCTGCTGGTTCTTCC+TGG - chr4_4:61865219-61865238 None:intergenic 55.0%
AGGCGGTGGATCTGGCTAAA+CGG + chr4_4:61865586-61865605 Msa0693050:intron 55.0%
GGAAGTGAGAGTAGCGGTGG+TGG - chr4_4:61860947-61860966 None:intergenic 60.0%
TGGGGAAGTGAGAGTAGCGG+TGG - chr4_4:61860950-61860969 None:intergenic 60.0%
TGGAGGGATTGGACCCGGTT+CGG + chr4_4:61861270-61861289 Msa0693050:CDS 60.0%
!! AATAGGGGTGCCCTGTGGGA+GGG - chr4_4:61862040-61862059 None:intergenic 60.0%
!! AAATAGGGGTGCCCTGTGGG+AGG - chr4_4:61862041-61862060 None:intergenic 60.0%
!! CAGCAAATAGGGGTGCCCTG+TGG - chr4_4:61862045-61862064 None:intergenic 60.0%
AAGCAGCGAGGGAGCTTGGT+TGG - chr4_4:61865068-61865087 None:intergenic 60.0%
!! CCAGCTTTGGGGGAGCTGCA+AGG - chr4_4:61863231-61863250 None:intergenic 65.0%
CCTTGCAGCTCCCCCAAAGC+TGG + chr4_4:61863228-61863247 Msa0693050:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 61860819 61866087 61860819 ID=Msa0693050;Name=Msa0693050
chr4_4 mRNA 61860819 61866087 61860819 ID=Msa0693050-mRNA-1;Parent=Msa0693050;Name=Msa0693050-mRNA-1;_AED=0.06;_eAED=0.06;_QI=36|1|1|1|1|1|7|392|291
chr4_4 exon 61860819 61861168 61860819 ID=Msa0693050-mRNA-1:exon:17174;Parent=Msa0693050-mRNA-1
chr4_4 exon 61861247 61861323 61861247 ID=Msa0693050-mRNA-1:exon:17175;Parent=Msa0693050-mRNA-1
chr4_4 exon 61861402 61861536 61861402 ID=Msa0693050-mRNA-1:exon:17176;Parent=Msa0693050-mRNA-1
chr4_4 exon 61863218 61863272 61863218 ID=Msa0693050-mRNA-1:exon:17177;Parent=Msa0693050-mRNA-1
chr4_4 exon 61863502 61863589 61863502 ID=Msa0693050-mRNA-1:exon:17178;Parent=Msa0693050-mRNA-1
chr4_4 exon 61865220 61865318 61865220 ID=Msa0693050-mRNA-1:exon:17179;Parent=Msa0693050-mRNA-1
chr4_4 exon 61865588 61866087 61865588 ID=Msa0693050-mRNA-1:exon:17180;Parent=Msa0693050-mRNA-1
chr4_4 five_prime_UTR 61860819 61860854 61860819 ID=Msa0693050-mRNA-1:five_prime_utr;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61860855 61861168 61860855 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61861247 61861323 61861247 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61861402 61861536 61861402 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61863218 61863272 61863218 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61863502 61863589 61863502 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61865220 61865318 61865220 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 CDS 61865588 61865695 61865588 ID=Msa0693050-mRNA-1:cds;Parent=Msa0693050-mRNA-1
chr4_4 three_prime_UTR 61865696 61866087 61865696 ID=Msa0693050-mRNA-1:three_prime_utr;Parent=Msa0693050-mRNA-1
Gene Sequence

>Msa0693050

ATGGAGGGAGCCTTACTTCCCCTCTCTTCACCTTCAACTTCTTCTTCCAAACTCAACCACCGCTTTTGCTTCCCCTCTTCACTACTAAACCACCACCGCTACTCTCACTTCCCCAAATTCCTTCCCAAACCCAAAATTAACACCGCTACTTCATCACCTTTATCTCTGAAATGCTCTCTCCGTGGTTCCACTTTAGCACTCGACAAAGACGAAACTTCTGTCTCAGAAATAACTGATAACTCTTCAATTTCTTTGCCTAAACTCGATAAAACCGGTCGGTTTTGTAGTCCGAGAGCCGCTAGAGAACTTGCTCTGTCTATAATTTATGCTTCGTGTTTGGAGGGATTGGACCCGGTTCGGTTATTTGAGAAACGGATGAATGAGCGTAGAGAGGTTGGTTATGAATTTAACAAGGACAAATTGTTGGAGTATAATCACATGAGTTTCGGAGGGCCACCTGTTATCGTTGAAACAGATGAAGAAGCTAATGAACTTCTAAGGAACATTCAACTCGAGTCTGCAATTGAAGAAGAAGTCCTTGCAGCTCCCCCAAAGCTGGTATATAGCAGATTGATTTTGAGGTTCACTAGGAAACTATTGGTTGCTGTCAGGGATAGATGGGACAGTCACGTCCCTGTCATTAACAAAGTTATCCCACCAAATTGGCAGGAAGAACCAGCAGGGAAGATTCTAGAGCTTTCTATTCTTCACTTGGCAATGTCTGAAATAGCTATGCTAGACACCAGACACCAAATCGTCATTAACGAGGCGGTGGATCTGGCTAAACGGTTCTGTGATGGAGCAGCCCCTCGTATCATTAATGGCTGTCTACGCACATTTTACCGAGATTTGGAGGCATCAAATAATAGGGTTTAG

Protein sequence

>Msa0693050

MEGALLPLSSPSTSSSKLNHRFCFPSSLLNHHRYSHFPKFLPKPKINTATSSPLSLKCSLRGSTLALDKDETSVSEITDNSSISLPKLDKTGRFCSPRAARELALSIIYASCLEGLDPVRLFEKRMNERREVGYEFNKDKLLEYNHMSFGGPPVIVETDEEANELLRNIQLESAIEEEVLAAPPKLVYSRLILRFTRKLLVAVRDRWDSHVPVINKVIPPNWQEEPAGKILELSILHLAMSEIAMLDTRHQIVINEAVDLAKRFCDGAAPRIINGCLRTFYRDLEASNNRV*