AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0456450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456450 MtrunA17_Chr3g0103371 93.960 149 9 0 1 149 1 149 9.14e-92 262
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0456450 AT2G01870.1 37.398 123 61 5 34 149 13 126 4.09e-16 71.2

Find 41 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCGTGTCTTAAAATT+TGG 0.120400 3_3:+50016143 Msa0456450:five_prime_UTR
GGAAATGAAGATAATGTTTA+TGG 0.128032 3_3:-50016117 None:intergenic
TCAACTTAGGAAAGAATATT+TGG 0.173434 3_3:+50017480 Msa0456450:three_prime_UTR
AAGCTCTTTGAGGGCTTCTT+TGG 0.197880 3_3:-50016414 None:intergenic
AGGGCTTCTTTGGCTTTCTC+TGG 0.231668 3_3:-50016404 None:intergenic
CTGCATAGTTCATGCATTAA+AGG 0.282045 3_3:+50016355 Msa0456450:CDS
GAGAGAGTACCCTTGAGTTT+TGG 0.292782 3_3:-50016479 None:intergenic
CTTCTCGTGTCTTAAAATTT+GGG 0.300531 3_3:+50016144 Msa0456450:five_prime_UTR
CCAATTGATGAAAATTTAAG+TGG 0.385000 3_3:-50017505 None:intergenic
GAAAGTGATGCAAATAATAA+TGG 0.386523 3_3:-50016251 None:intergenic
GTAATTAAGCCAGCCATTGA+TGG 0.399846 3_3:+50017293 Msa0456450:CDS
TTATTACATAATAACGATAA+AGG 0.404120 3_3:+50016281 Msa0456450:CDS
CTGCACTTGGATATAGGTTA+TGG 0.412024 3_3:-50017317 None:intergenic
TCGCGACATATATAAAGTTA+AGG 0.412406 3_3:+50017369 Msa0456450:three_prime_UTR
ACATATATAAAGTTAAGGTT+TGG 0.420592 3_3:+50017374 Msa0456450:three_prime_UTR
TTTCTGGTCAAGCTCTTTGA+GGG 0.426726 3_3:-50016423 None:intergenic
ACCTTTCTTGCACTTCTAGC+TGG 0.428554 3_3:+50017224 Msa0456450:CDS
CACACACTGCACTTGGATAT+AGG 0.429892 3_3:-50017323 None:intergenic
GGGCTTCTTTGGCTTTCTCT+GGG 0.431656 3_3:-50016403 None:intergenic
GTGTGATATTAATTAATTTG+CGG 0.439644 3_3:+50017341 Msa0456450:three_prime_UTR
TTAATATCACACACTGCACT+TGG 0.458769 3_3:-50017330 None:intergenic
TTTCTTGCACTTCTAGCTGG+TGG 0.505803 3_3:+50017227 Msa0456450:CDS
ACCAGCTAGAAGTGCAAGAA+AGG 0.506989 3_3:-50017225 None:intergenic
GGCTGCTTATAGATGCTAAG+AGG 0.520680 3_3:-50016227 None:intergenic
TATAGGTTATGGACCATCAA+TGG 0.534653 3_3:-50017306 None:intergenic
GACAACATTAAAATCAACTT+AGG 0.546871 3_3:+50017467 Msa0456450:three_prime_UTR
TGGCTGGCTTAATTACAGTA+AGG 0.551216 3_3:-50017286 None:intergenic
AGTTTCCTCTCCAAAACTCA+AGG 0.567427 3_3:+50016469 Msa0456450:CDS
GGTTATGGACCATCAATGGC+TGG 0.567707 3_3:-50017302 None:intergenic
CTTATCACCTCCTCTCTCGT+AGG 0.590439 3_3:-50017170 None:intergenic
ATAAAGGCATATTCAAAGAG+AGG 0.608157 3_3:+50016297 Msa0456450:CDS
GTTTCCTCTCCAAAACTCAA+GGG 0.619477 3_3:+50016470 Msa0456450:CDS
GAATAACATCTGAATATGAG+TGG 0.621057 3_3:-50016195 None:intergenic
AGAAATGAAGCCTACGAGAG+AGG 0.629871 3_3:+50017160 Msa0456450:CDS
CAGAATCTTAGCAACATGCG+TGG 0.639323 3_3:-50017442 None:intergenic
AGAATCTTAGCAACATGCGT+GGG 0.645379 3_3:-50017441 None:intergenic
AAGGCATATTCAAAGAGAGG+AGG 0.658459 3_3:+50016300 Msa0456450:CDS
AATGAAGCCTACGAGAGAGG+AGG 0.660242 3_3:+50017163 Msa0456450:CDS
GTGAATGTAGTGAAGAGTGA+AGG 0.676798 3_3:+50016166 Msa0456450:five_prime_UTR
AGTGATGCAAATAATAATGG+TGG 0.676828 3_3:-50016248 None:intergenic
GAGGTGATAAGTGACAACAA+TGG 0.780630 3_3:+50017182 Msa0456450:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTACATAATAACGATAA+AGG + chr3_3:50016281-50016300 Msa0456450:CDS 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG + chr3_3:50016644-50016663 Msa0456450:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG - chr3_3:50016651-50016670 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG + chr3_3:50016682-50016701 Msa0456450:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG - chr3_3:50016953-50016972 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG + chr3_3:50016957-50016976 Msa0456450:intron 15.0%
!! TTATTACATAATAACGATAA+AGG + chr3_3:50016281-50016300 Msa0456450:CDS 15.0%
!!! ATTTCCCTTTTTTAATTTTA+CGG + chr3_3:50016644-50016663 Msa0456450:intron 15.0%
!! AAAACCGTAAAATTAAAAAA+GGG - chr3_3:50016651-50016670 None:intergenic 15.0%
!!! TTTGGAAAAAACAATTATTT+TGG + chr3_3:50016682-50016701 Msa0456450:intron 15.0%
!! ATTATTCAACATATTTGAAT+TGG - chr3_3:50016953-50016972 None:intergenic 15.0%
!! AAATATGTTGAATAATAACA+AGG + chr3_3:50016957-50016976 Msa0456450:intron 15.0%
!! CAAAATAAGAGAAAAAGAAA+CGG - chr3_3:50016504-50016523 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG - chr3_3:50016652-50016671 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG - chr3_3:50016738-50016757 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG - chr3_3:50016865-50016884 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG - chr3_3:50016866-50016885 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG - chr3_3:50016921-50016940 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG - chr3_3:50017115-50017134 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG + chr3_3:50017341-50017360 Msa0456450:three_prime_UTR 20.0%
!! ACATATATAAAGTTAAGGTT+TGG + chr3_3:50017374-50017393 Msa0456450:three_prime_UTR 20.0%
!! CAAAATAAGAGAAAAAGAAA+CGG - chr3_3:50016504-50016523 None:intergenic 20.0%
!! CAAAACCGTAAAATTAAAAA+AGG - chr3_3:50016652-50016671 None:intergenic 20.0%
!!! TTACATTTTATCTTGAGTTA+AGG - chr3_3:50016738-50016757 None:intergenic 20.0%
!! CGAAATGTAAATTTAGAAAA+GGG - chr3_3:50016865-50016884 None:intergenic 20.0%
!! ACGAAATGTAAATTTAGAAA+AGG - chr3_3:50016866-50016885 None:intergenic 20.0%
!! ACATCATATATAGTTAATCT+TGG - chr3_3:50016921-50016940 None:intergenic 20.0%
!! AAGTATGTACTATTTATAAG+TGG - chr3_3:50017115-50017134 None:intergenic 20.0%
!!! GTGTGATATTAATTAATTTG+CGG + chr3_3:50017341-50017360 Msa0456450:three_prime_UTR 20.0%
!! ACATATATAAAGTTAAGGTT+TGG + chr3_3:50017374-50017393 Msa0456450:three_prime_UTR 20.0%
! GGAAATGAAGATAATGTTTA+TGG - chr3_3:50016120-50016139 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG - chr3_3:50016254-50016273 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG - chr3_3:50016442-50016461 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG + chr3_3:50016540-50016559 Msa0456450:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG + chr3_3:50016562-50016581 Msa0456450:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG + chr3_3:50016619-50016638 Msa0456450:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG + chr3_3:50016664-50016683 Msa0456450:intron 25.0%
! GACTTTACACCTTATTATTA+CGG - chr3_3:50016821-50016840 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG + chr3_3:50016822-50016841 Msa0456450:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG + chr3_3:50016823-50016842 Msa0456450:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG + chr3_3:50016992-50017011 Msa0456450:intron 25.0%
! GACAACATTAAAATCAACTT+AGG + chr3_3:50017467-50017486 Msa0456450:three_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG + chr3_3:50017480-50017499 Msa0456450:three_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG - chr3_3:50017508-50017527 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG + chr3_3:50017505-50017524 Msa0456450:three_prime_UTR 25.0%
! GGAAATGAAGATAATGTTTA+TGG - chr3_3:50016120-50016139 None:intergenic 25.0%
! GAAAGTGATGCAAATAATAA+TGG - chr3_3:50016254-50016273 None:intergenic 25.0%
!! TAGAGATAGATTGAATTTTC+TGG - chr3_3:50016442-50016461 None:intergenic 25.0%
!! TGTAGTGCTTTTAAATTTTG+TGG + chr3_3:50016540-50016559 Msa0456450:intron 25.0%
! GAAGTTTATGTCTTATGATA+AGG + chr3_3:50016562-50016581 Msa0456450:intron 25.0%
! GAATTGCAATTGATTATAGT+AGG + chr3_3:50016619-50016638 Msa0456450:intron 25.0%
!!! CGGTTTTGTTTATTTCTTTT+TGG + chr3_3:50016664-50016683 Msa0456450:intron 25.0%
! GACTTTACACCTTATTATTA+CGG - chr3_3:50016821-50016840 None:intergenic 25.0%
! AATAATAAGGTGTAAAGTCA+AGG + chr3_3:50016822-50016841 Msa0456450:intron 25.0%
! ATAATAAGGTGTAAAGTCAA+GGG + chr3_3:50016823-50016842 Msa0456450:intron 25.0%
!!! TTCTCTTCATTTTTCATTCT+AGG + chr3_3:50016992-50017011 Msa0456450:intron 25.0%
! GACAACATTAAAATCAACTT+AGG + chr3_3:50017467-50017486 Msa0456450:three_prime_UTR 25.0%
! TCAACTTAGGAAAGAATATT+TGG + chr3_3:50017480-50017499 Msa0456450:three_prime_UTR 25.0%
! CCAATTGATGAAAATTTAAG+TGG - chr3_3:50017508-50017527 None:intergenic 25.0%
!! CCACTTAAATTTTCATCAAT+TGG + chr3_3:50017505-50017524 Msa0456450:three_prime_UTR 25.0%
CTTCTCGTGTCTTAAAATTT+GGG + chr3_3:50016144-50016163 Msa0456450:five_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG - chr3_3:50016198-50016217 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG - chr3_3:50016251-50016270 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG + chr3_3:50016297-50016316 Msa0456450:CDS 30.0%
AATTGACCACCGTAATAATA+AGG + chr3_3:50016809-50016828 Msa0456450:intron 30.0%
TTTACACCTTATTATTACGG+TGG - chr3_3:50016818-50016837 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG - chr3_3:50016894-50016913 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG + chr3_3:50016997-50017016 Msa0456450:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG + chr3_3:50016998-50017017 Msa0456450:intron 30.0%
TCGCGACATATATAAAGTTA+AGG + chr3_3:50017369-50017388 Msa0456450:three_prime_UTR 30.0%
CTTCTCGTGTCTTAAAATTT+GGG + chr3_3:50016144-50016163 Msa0456450:five_prime_UTR 30.0%
GAATAACATCTGAATATGAG+TGG - chr3_3:50016198-50016217 None:intergenic 30.0%
AGTGATGCAAATAATAATGG+TGG - chr3_3:50016251-50016270 None:intergenic 30.0%
! ATAAAGGCATATTCAAAGAG+AGG + chr3_3:50016297-50016316 Msa0456450:CDS 30.0%
AATTGACCACCGTAATAATA+AGG + chr3_3:50016809-50016828 Msa0456450:intron 30.0%
TTTACACCTTATTATTACGG+TGG - chr3_3:50016818-50016837 None:intergenic 30.0%
ACTTGTATAATCTTAGGAGA+GGG - chr3_3:50016894-50016913 None:intergenic 30.0%
!! TTCATTTTTCATTCTAGGAG+TGG + chr3_3:50016997-50017016 Msa0456450:intron 30.0%
!! TCATTTTTCATTCTAGGAGT+GGG + chr3_3:50016998-50017017 Msa0456450:intron 30.0%
TCGCGACATATATAAAGTTA+AGG + chr3_3:50017369-50017388 Msa0456450:three_prime_UTR 30.0%
!!! TTTTAAGACACGAGAAGCAA+TGG - chr3_3:50016141-50016160 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG + chr3_3:50016143-50016162 Msa0456450:five_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG + chr3_3:50016355-50016374 Msa0456450:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG - chr3_3:50016710-50016729 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG + chr3_3:50016711-50016730 Msa0456450:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG - chr3_3:50016783-50016802 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG - chr3_3:50016895-50016914 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG - chr3_3:50016900-50016919 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG - chr3_3:50017024-50017043 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG - chr3_3:50017025-50017044 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG + chr3_3:50017083-50017102 Msa0456450:intron 35.0%
TATAGGTTATGGACCATCAA+TGG - chr3_3:50017309-50017328 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG - chr3_3:50017333-50017352 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG - chr3_3:50017430-50017449 None:intergenic 35.0%
!!! TTTTAAGACACGAGAAGCAA+TGG - chr3_3:50016141-50016160 None:intergenic 35.0%
GCTTCTCGTGTCTTAAAATT+TGG + chr3_3:50016143-50016162 Msa0456450:five_prime_UTR 35.0%
CTGCATAGTTCATGCATTAA+AGG + chr3_3:50016355-50016374 Msa0456450:CDS 35.0%
TATAACAACGAGTGCAAAGT+AGG - chr3_3:50016710-50016729 None:intergenic 35.0%
CTTTGCACTCGTTGTTATAA+TGG + chr3_3:50016711-50016730 Msa0456450:intron 35.0%
TCAAAGACTAAACCGACTAA+CGG - chr3_3:50016783-50016802 None:intergenic 35.0%
GACTTGTATAATCTTAGGAG+AGG - chr3_3:50016895-50016914 None:intergenic 35.0%
! GGCATGACTTGTATAATCTT+AGG - chr3_3:50016900-50016919 None:intergenic 35.0%
AAATGATACTCTTCGAGTGA+GGG - chr3_3:50017024-50017043 None:intergenic 35.0%
AAAATGATACTCTTCGAGTG+AGG - chr3_3:50017025-50017044 None:intergenic 35.0%
CTCAATGAACTCAAACTCTT+TGG + chr3_3:50017083-50017102 Msa0456450:intron 35.0%
TATAGGTTATGGACCATCAA+TGG - chr3_3:50017309-50017328 None:intergenic 35.0%
TTAATATCACACACTGCACT+TGG - chr3_3:50017333-50017352 None:intergenic 35.0%
ATGCGTGGGATATAAAAACA+TGG - chr3_3:50017430-50017449 None:intergenic 35.0%
GTGAATGTAGTGAAGAGTGA+AGG + chr3_3:50016166-50016185 Msa0456450:five_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG + chr3_3:50016300-50016319 Msa0456450:CDS 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG - chr3_3:50016426-50016445 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG - chr3_3:50016427-50016446 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG + chr3_3:50016469-50016488 Msa0456450:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG + chr3_3:50016470-50016489 Msa0456450:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG - chr3_3:50016588-50016607 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG + chr3_3:50016827-50016846 Msa0456450:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG + chr3_3:50017182-50017201 Msa0456450:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG - chr3_3:50017289-50017308 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG + chr3_3:50017293-50017312 Msa0456450:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG - chr3_3:50017320-50017339 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG - chr3_3:50017444-50017463 None:intergenic 40.0%
GTGAATGTAGTGAAGAGTGA+AGG + chr3_3:50016166-50016185 Msa0456450:five_prime_UTR 40.0%
AAGGCATATTCAAAGAGAGG+AGG + chr3_3:50016300-50016319 Msa0456450:CDS 40.0%
! TTTCTGGTCAAGCTCTTTGA+GGG - chr3_3:50016426-50016445 None:intergenic 40.0%
!! TTTTCTGGTCAAGCTCTTTG+AGG - chr3_3:50016427-50016446 None:intergenic 40.0%
AGTTTCCTCTCCAAAACTCA+AGG + chr3_3:50016469-50016488 Msa0456450:CDS 40.0%
GTTTCCTCTCCAAAACTCAA+GGG + chr3_3:50016470-50016489 Msa0456450:CDS 40.0%
AAAATCCTTCGTGTCTAACG+AGG - chr3_3:50016588-50016607 None:intergenic 40.0%
TAAGGTGTAAAGTCAAGGGT+CGG + chr3_3:50016827-50016846 Msa0456450:intron 40.0%
GAGGTGATAAGTGACAACAA+TGG + chr3_3:50017182-50017201 Msa0456450:CDS 40.0%
!! TGGCTGGCTTAATTACAGTA+AGG - chr3_3:50017289-50017308 None:intergenic 40.0%
GTAATTAAGCCAGCCATTGA+TGG + chr3_3:50017293-50017312 Msa0456450:CDS 40.0%
CTGCACTTGGATATAGGTTA+TGG - chr3_3:50017320-50017339 None:intergenic 40.0%
AGAATCTTAGCAACATGCGT+GGG - chr3_3:50017444-50017463 None:intergenic 40.0%
GGCTGCTTATAGATGCTAAG+AGG - chr3_3:50016230-50016249 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG - chr3_3:50016417-50016436 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG - chr3_3:50016477-50016496 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG - chr3_3:50016482-50016501 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG + chr3_3:50016768-50016787 Msa0456450:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG + chr3_3:50017160-50017179 Msa0456450:CDS 45.0%
ACCTTTCTTGCACTTCTAGC+TGG + chr3_3:50017224-50017243 Msa0456450:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG - chr3_3:50017228-50017247 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG + chr3_3:50017227-50017246 Msa0456450:CDS 45.0%
CACACACTGCACTTGGATAT+AGG - chr3_3:50017326-50017345 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG - chr3_3:50017445-50017464 None:intergenic 45.0%
GGCTGCTTATAGATGCTAAG+AGG - chr3_3:50016230-50016249 None:intergenic 45.0%
! AAGCTCTTTGAGGGCTTCTT+TGG - chr3_3:50016417-50016436 None:intergenic 45.0%
!!! AGTACCCTTGAGTTTTGGAG+AGG - chr3_3:50016477-50016496 None:intergenic 45.0%
!!! GAGAGAGTACCCTTGAGTTT+TGG - chr3_3:50016482-50016501 None:intergenic 45.0%
AGACGTGTACATCCGTTAGT+CGG + chr3_3:50016768-50016787 Msa0456450:intron 45.0%
AGAAATGAAGCCTACGAGAG+AGG + chr3_3:50017160-50017179 Msa0456450:CDS 45.0%
ACCTTTCTTGCACTTCTAGC+TGG + chr3_3:50017224-50017243 Msa0456450:CDS 45.0%
! ACCAGCTAGAAGTGCAAGAA+AGG - chr3_3:50017228-50017247 None:intergenic 45.0%
! TTTCTTGCACTTCTAGCTGG+TGG + chr3_3:50017227-50017246 Msa0456450:CDS 45.0%
CACACACTGCACTTGGATAT+AGG - chr3_3:50017326-50017345 None:intergenic 45.0%
CAGAATCTTAGCAACATGCG+TGG - chr3_3:50017445-50017464 None:intergenic 45.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG - chr3_3:50016406-50016425 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG - chr3_3:50016407-50016426 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG + chr3_3:50016580-50016599 Msa0456450:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG + chr3_3:50017163-50017182 Msa0456450:CDS 50.0%
CTTATCACCTCCTCTCTCGT+AGG - chr3_3:50017173-50017192 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG - chr3_3:50017305-50017324 None:intergenic 50.0%
!! GGGCTTCTTTGGCTTTCTCT+GGG - chr3_3:50016406-50016425 None:intergenic 50.0%
!! AGGGCTTCTTTGGCTTTCTC+TGG - chr3_3:50016407-50016426 None:intergenic 50.0%
TAAGGCCTCGTTAGACACGA+AGG + chr3_3:50016580-50016599 Msa0456450:intron 50.0%
AATGAAGCCTACGAGAGAGG+AGG + chr3_3:50017163-50017182 Msa0456450:CDS 50.0%
CTTATCACCTCCTCTCTCGT+AGG - chr3_3:50017173-50017192 None:intergenic 50.0%
GGTTATGGACCATCAATGGC+TGG - chr3_3:50017305-50017324 None:intergenic 50.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 50016104 50017555 50016104 ID=Msa0456450;Name=Msa0456450
chr3_3 mRNA 50016104 50017555 50016104 ID=Msa0456450-mRNA-1;Parent=Msa0456450;Name=Msa0456450-mRNA-1;_AED=0.00;_eAED=0.00;_QI=105|1|1|1|1|1|2|233|149
chr3_3 exon 50016104 50016491 50016104 ID=Msa0456450-mRNA-1:exon:9564;Parent=Msa0456450-mRNA-1
chr3_3 exon 50017156 50017555 50017156 ID=Msa0456450-mRNA-1:exon:9565;Parent=Msa0456450-mRNA-1
chr3_3 five_prime_UTR 50016104 50016208 50016104 ID=Msa0456450-mRNA-1:five_prime_utr;Parent=Msa0456450-mRNA-1
chr3_3 CDS 50016209 50016491 50016209 ID=Msa0456450-mRNA-1:cds;Parent=Msa0456450-mRNA-1
chr3_3 CDS 50017156 50017322 50017156 ID=Msa0456450-mRNA-1:cds;Parent=Msa0456450-mRNA-1
chr3_3 three_prime_UTR 50017323 50017555 50017323 ID=Msa0456450-mRNA-1:three_prime_utr;Parent=Msa0456450-mRNA-1
Gene Sequence

>Msa0456450

ATGTTATTCTCTATGAAACCTCTTAGCATCTATAAGCAGCCACCATTATTATTTGCATCACTTTCTAAATCGTTATTACATAATAACGATAAAGGCATATTCAAAGAGAGGAGGCTCATAAAATATTCTTCTTCATTTAATTTATGCTGCATAGTTCATGCATTAAAGGAAGATTCAAAGCAATATGAGATAGACCCAGAGAAAGCCAAAGAAGCCCTCAAAGAGCTTGACCAGAAAATTCAATCTATCTCTAGTAGAGAAGTTTCCTCTCCAAAACTCAAGGTATCAGAAATGAAGCCTACGAGAGAGGAGGTGATAAGTGACAACAATGGTAAGCTAGAAATTTCAGAGACCTTTCTTGCACTTCTAGCTGGTGGACTTGTTCTCTTTACTATATTGTACAATGTACTATTCCTTACTGTAATTAAGCCAGCCATTGATGGTCCATAA

Protein sequence

>Msa0456450

MLFSMKPLSIYKQPPLLFASLSKSLLHNNDKGIFKERRLIKYSSSFNLCCIVHALKEDSKQYEIDPEKAKEALKELDQKIQSISSREVSSPKLKVSEMKPTREEVISDNNGKLEISETFLALLAGGLVLFTILYNVLFLTVIKPAIDGP*