Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1449730 | A0A072VNY8 | 73.214 | 56 | 12 | 1 | 5 | 60 | 18 | 70 | 1.55e-20 | 85.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036960 | Msa1449730 | 0.841955 | 3.470978e-58 | -8.615850e-47 |
| Msa0095540 | Msa1449730 | 0.877629 | 5.390700e-69 | -8.615850e-47 |
| Msa1395870 | Msa1449730 | 0.824649 | 7.199937e-54 | -8.615850e-47 |
| Msa1399560 | Msa1449730 | 0.839544 | 1.487600e-57 | -8.615850e-47 |
| Msa0611380 | Msa1449730 | 0.833811 | 4.302377e-56 | -8.615850e-47 |
| Msa0628640 | Msa1449730 | 0.841472 | 4.655821e-58 | -8.615850e-47 |
| Msa0631120 | Msa1449730 | 0.830288 | 3.194873e-55 | -8.615850e-47 |
| Msa0666030 | Msa1449730 | 0.810091 | 1.369688e-50 | -8.615850e-47 |
| Msa0669340 | Msa1449730 | 0.827302 | 1.686154e-54 | -8.615850e-47 |
| Msa0684500 | Msa1449730 | 0.808655 | 2.783088e-50 | -8.615850e-47 |
| Msa0716450 | Msa1449730 | 0.824639 | 7.237414e-54 | -8.615850e-47 |
| Msa0717260 | Msa1449730 | 0.820701 | 5.968322e-53 | -8.615850e-47 |
| Msa0734230 | Msa1449730 | 0.802696 | 4.962804e-49 | -8.615850e-47 |
| Msa0758320 | Msa1449730 | 0.820515 | 6.585143e-53 | -8.615850e-47 |
| Msa0775440 | Msa1449730 | 0.816425 | 5.567263e-52 | -8.615850e-47 |
| Msa0799030 | Msa1449730 | 0.815175 | 1.057756e-51 | -8.615850e-47 |
| Msa0799700 | Msa1449730 | 0.800247 | 1.576173e-48 | -8.615850e-47 |
| Msa0812820 | Msa1449730 | 0.816064 | 6.705791e-52 | -8.615850e-47 |
| Msa0837440 | Msa1449730 | 0.815178 | 1.055931e-51 | -8.615850e-47 |
| Msa0837980 | Msa1449730 | 0.827489 | 1.521338e-54 | -8.615850e-47 |
| Msa0141100 | Msa1449730 | 0.852229 | 5.293482e-61 | -8.615850e-47 |
| Msa0191040 | Msa1449730 | 0.805374 | 1.376782e-49 | -8.615850e-47 |
| Msa0233340 | Msa1449730 | 0.805354 | 1.390270e-49 | -8.615850e-47 |
| Msa1227950 | Msa1449730 | 0.821368 | 4.189506e-53 | -8.615850e-47 |
| Msa1227970 | Msa1449730 | 0.807679 | 4.493213e-50 | -8.615850e-47 |
| Msa1254700 | Msa1449730 | 0.809217 | 2.110579e-50 | -8.615850e-47 |
| Msa1255280 | Msa1449730 | 0.820280 | 7.454087e-53 | -8.615850e-47 |
| Msa1258050 | Msa1449730 | 0.804388 | 2.212837e-49 | -8.615850e-47 |
| Msa1266960 | Msa1449730 | 0.835387 | 1.728883e-56 | -8.615850e-47 |
| Msa0374850 | Msa1449730 | 0.851926 | 6.456485e-61 | -8.615850e-47 |
| Msa0375090 | Msa1449730 | 0.849446 | 3.218001e-60 | -8.615850e-47 |
| Msa0470340 | Msa1449730 | 0.828925 | 6.854352e-55 | -8.615850e-47 |
| Msa0480950 | Msa1449730 | 0.818654 | 1.750858e-52 | -8.615850e-47 |
| Msa1002620 | Msa1449730 | 0.808378 | 3.189441e-50 | -8.615850e-47 |
| Msa1033560 | Msa1449730 | 0.800123 | 1.670086e-48 | -8.615850e-47 |
| Msa0311690 | Msa1449730 | 0.800599 | 1.336213e-48 | -8.615850e-47 |
| Msa1190120 | Msa1449730 | 0.813555 | 2.412378e-51 | -8.615850e-47 |
| Msa1201890 | Msa1449730 | 0.809094 | 2.242367e-50 | -8.615850e-47 |
| Msa1203000 | Msa1449730 | 0.819458 | 1.149313e-52 | -8.615850e-47 |
| Msa1211550 | Msa1449730 | 0.802893 | 4.518703e-49 | -8.615850e-47 |
| Msa1218600 | Msa1449730 | 0.801675 | 8.050584e-49 | -8.615850e-47 |
| Msa1219260 | Msa1449730 | 0.852955 | 3.285617e-61 | -8.615850e-47 |
| Msa0531430 | Msa1449730 | 0.838979 | 2.084512e-57 | -8.615850e-47 |
| Msa0534570 | Msa1449730 | 0.810176 | 1.312615e-50 | -8.615850e-47 |
| Msa0534590 | Msa1449730 | 0.820581 | 6.358469e-53 | -8.615850e-47 |
| Msa0590800 | Msa1449730 | 0.819552 | 1.093615e-52 | -8.615850e-47 |
| Msa0853320 | Msa1449730 | 0.813801 | 2.129492e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 11 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAAATTCACATAATGAT+TGG | 0.393884 | tig0032678:+27089 | None:intergenic |
| TGGTTTGGTGCAGGTTATGA+TGG | 0.410190 | tig0032678:-29719 | None:intergenic |
| TTTCCCATGATGGGAAAAGC+TGG | 0.461719 | tig0032678:-29682 | Msa1449730:CDS |
| AGAAGATTATGCTTCTCAAC+GGG | 0.498617 | tig0032678:-27168 | Msa1449730:CDS |
| ATGGGAAAAGCTGGGTTGAC+TGG | 0.514865 | tig0032678:-29673 | Msa1449730:intron |
| TTCCCATGATGGGAAAAGCT+GGG | 0.535647 | tig0032678:-29681 | Msa1449730:CDS |
| GGTTTGGTGCAGGTTATGAT+GGG | 0.539945 | tig0032678:-29718 | None:intergenic |
| TAGAAGATTATGCTTCTCAA+CGG | 0.625011 | tig0032678:-27169 | Msa1449730:CDS |
| TGGAACATCGAGGTGGCTGA+AGG | 0.628575 | tig0032678:+27109 | Msa1449720:intergenic |
| TAATGATTGGAACATCGAGG+TGG | 0.726775 | tig0032678:+27102 | Msa1449720:intergenic |
| ACATAATGATTGGAACATCG+AGG | 0.733437 | tig0032678:+27099 | Msa1449720:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATATTCATAAAATAG+GGG | + | tig0032678:27261-27280 | Msa1449730:intergenic | 10.0% |
| !! | GTTAATAATATTCATAAAAT+AGG | + | tig0032678:27263-27282 | Msa1449730:intergenic | 10.0% |
| !! | TTGATATATTCATAAAATAT+TGG | + | tig0032678:28081-28100 | Msa1449730:intergenic | 10.0% |
| !!! | ATATTTTATGAATATATCAA+TGG | - | tig0032678:28081-28100 | Msa1449730:intron | 10.0% |
| !! | AATATAATAAAGACATAAGT+GGG | + | tig0032678:27227-27246 | Msa1449730:intergenic | 15.0% |
| !! | AAATATAATAAAGACATAAG+TGG | + | tig0032678:27228-27247 | Msa1449730:intergenic | 15.0% |
| !! | AATCAAAGAATCTATTAATT+CGG | - | tig0032678:27410-27429 | Msa1449730:intron | 15.0% |
| !! | TAAAATTACTATAAGGTTAT+TGG | - | tig0032678:27652-27671 | Msa1449730:intron | 15.0% |
| !! | TTATAAATGTTGATCAATAT+AGG | + | tig0032678:27969-27988 | Msa1449730:intergenic | 15.0% |
| !! | TATTGATCAACATTTATAAT+TGG | - | tig0032678:27970-27989 | Msa1449730:intron | 15.0% |
| !! | TAAATTTACTAAAACTAACA+AGG | - | tig0032678:28015-28034 | Msa1449730:intron | 15.0% |
| !! | TATATTCATAAAATATTGGA+TGG | + | tig0032678:28077-28096 | Msa1449730:intergenic | 15.0% |
| !!! | TTTTTATGCTTTTGAATATA+AGG | - | tig0032678:28476-28495 | Msa1449730:intron | 15.0% |
| !!! | TAATAATTTTATCCCATTTA+CGG | - | tig0032678:28570-28589 | Msa1449730:intron | 15.0% |
| !! | ACTAGATAATATCTATTAAT+TGG | - | tig0032678:28598-28617 | Msa1449730:intron | 15.0% |
| !! | AAAAATGAAATTGACAATTT+CGG | - | tig0032678:28851-28870 | Msa1449730:intron | 15.0% |
| !!! | ACAATCATATTTAGTTTTGT+GGG | + | tig0032678:27200-27219 | Msa1449730:intergenic | 20.0% |
| !!! | TACAATCATATTTAGTTTTG+TGG | + | tig0032678:27201-27220 | Msa1449730:intergenic | 20.0% |
| !! | GGAATAATTTATTATTCTCT+CGG | + | tig0032678:27337-27356 | Msa1449730:intergenic | 20.0% |
| !! | TGTTCGATAAAATTACTATA+AGG | - | tig0032678:27645-27664 | Msa1449730:intron | 20.0% |
| !! | ACATGTAAAAAATGTAATTC+TGG | + | tig0032678:27688-27707 | Msa1449730:intergenic | 20.0% |
| !!! | ATTTCATTTTTAATTTGCTG+CGG | + | tig0032678:27910-27929 | Msa1449730:intergenic | 20.0% |
| !! | CATTTATAATTGGACAAAAA+TGG | - | tig0032678:27980-27999 | Msa1449730:intron | 20.0% |
| !! | TATTCTACTAATTTGATATC+AGG | + | tig0032678:28212-28231 | Msa1449730:intergenic | 20.0% |
| !! | CATTGAATAATTGATATATC+TGG | + | tig0032678:28351-28370 | Msa1449730:intergenic | 20.0% |
| !! | TATCAATAAATACTTTCTCT+AGG | + | tig0032678:28410-28429 | Msa1449730:intergenic | 20.0% |
| !!! | TCATTGTATTATTTGCTATT+TGG | - | tig0032678:28943-28962 | Msa1449730:intron | 20.0% |
| !!! | AAATTTCTAGTAAATCGAAA+TGG | + | tig0032678:29401-29420 | Msa1449730:intergenic | 20.0% |
| !! | TTTGATGTGAATAATAATGT+GGG | + | tig0032678:29515-29534 | Msa1449730:intergenic | 20.0% |
| !! | ATTTGATGTGAATAATAATG+TGG | + | tig0032678:29516-29535 | Msa1449730:intergenic | 20.0% |
| !!! | AATCATATTTAGTTTTGTGG+GGG | + | tig0032678:27198-27217 | Msa1449730:intergenic | 25.0% |
| !!! | CAATCATATTTAGTTTTGTG+GGG | + | tig0032678:27199-27218 | Msa1449730:intergenic | 25.0% |
| ! | CTAATTCAGAGTATATTAGA+AGG | - | tig0032678:27437-27456 | Msa1449730:intron | 25.0% |
| ! | TTGTACAAAATATGCAGAAT+TGG | + | tig0032678:27554-27573 | Msa1449730:intergenic | 25.0% |
| ! | TTATAATTGGACAAAAATGG+AGG | - | tig0032678:27983-28002 | Msa1449730:intron | 25.0% |
| ! | TATAATTGGACAAAAATGGA+GGG | - | tig0032678:27984-28003 | Msa1449730:intron | 25.0% |
| !!! | ACTTGTTAATTTTCCATGAT+GGG | + | tig0032678:28122-28141 | Msa1449730:intergenic | 25.0% |
| !! | AAAAGGTGACTTTTTATGAT+GGG | + | tig0032678:28148-28167 | Msa1449730:intergenic | 25.0% |
| !! | TATTATTTTCTGACAGCAAA+TGG | + | tig0032678:28555-28574 | Msa1449730:intergenic | 25.0% |
| !!! | TGTATTATTTGCTATTTGGA+TGG | - | tig0032678:28947-28966 | Msa1449730:intron | 25.0% |
| ! | AAAAATGATATTGATGAGTG+TGG | - | tig0032678:29208-29227 | Msa1449730:intron | 25.0% |
| ! | AAAATGATATTGATGAGTGT+GGG | - | tig0032678:29209-29228 | Msa1449730:intron | 25.0% |
| ! | AAAACAGAAATGAAATCACT+TGG | + | tig0032678:29468-29487 | Msa1449730:intergenic | 25.0% |
| ! | ACTTCATAATTTTCCCATGA+TGG | - | tig0032678:27111-27130 | Msa1449730:CDS | 30.0% |
| ! | CTTCATAATTTTCCCATGAT+GGG | - | tig0032678:27112-27131 | Msa1449730:CDS | 30.0% |
| ATAACAATACAGTGATTGTG+GGG | + | tig0032678:27358-27377 | Msa1449730:intergenic | 30.0% | |
| GATAACAATACAGTGATTGT+GGG | + | tig0032678:27359-27378 | Msa1449730:intergenic | 30.0% | |
| TGATAACAATACAGTGATTG+TGG | + | tig0032678:27360-27379 | Msa1449730:intergenic | 30.0% | |
| ACTAAAACTAACAAGGCAAT+TGG | - | tig0032678:28022-28041 | Msa1449730:intron | 30.0% | |
| ! | TATTTGACATTTTCCCATCA+TGG | - | tig0032678:28106-28125 | Msa1449730:intron | 30.0% |
| !!! | GACTTGTTAATTTTCCATGA+TGG | + | tig0032678:28123-28142 | Msa1449730:intergenic | 30.0% |
| ! | CAAAAGGTGACTTTTTATGA+TGG | + | tig0032678:28149-28168 | Msa1449730:intergenic | 30.0% |
| ! | CATCATAAAAAGTCACCTTT+TGG | - | tig0032678:28147-28166 | Msa1449730:intron | 30.0% |
| !!! | AAAGTCACCTTTTGGTTTTA+CGG | - | tig0032678:28155-28174 | Msa1449730:intron | 30.0% |
| !!! | ATCAGGTGTATCTTTTTTAG+AGG | + | tig0032678:28195-28214 | Msa1449730:intergenic | 30.0% |
| ATCTAGTGTTATCCGTAAAT+GGG | + | tig0032678:28585-28604 | Msa1449730:intergenic | 30.0% | |
| TATCTAGTGTTATCCGTAAA+TGG | + | tig0032678:28586-28605 | Msa1449730:intergenic | 30.0% | |
| AATGAAATTGACAATTTCGG+CGG | - | tig0032678:28854-28873 | Msa1449730:intron | 30.0% | |
| AATTACATCGTTCATTCAAG+GGG | + | tig0032678:28920-28939 | Msa1449730:intergenic | 30.0% | |
| CAATTACATCGTTCATTCAA+GGG | + | tig0032678:28921-28940 | Msa1449730:intergenic | 30.0% | |
| TCAATTACATCGTTCATTCA+AGG | + | tig0032678:28922-28941 | Msa1449730:intergenic | 30.0% | |
| TCAAATAGAAGAAACTGAGT+AGG | + | tig0032678:28997-29016 | Msa1449730:intergenic | 30.0% | |
| !! | TTATTTCTAAATGACATCCG+AGG | - | tig0032678:29107-29126 | Msa1449730:intron | 30.0% |
| ATGATCATCCTTACTACTTT+GGG | - | tig0032678:29130-29149 | Msa1449730:intron | 30.0% | |
| ATATCTCATCTAAAGGAGTA+AGG | + | tig0032678:29179-29198 | Msa1449730:intergenic | 30.0% | |
| CAAACTGATATCTCATCTAA+AGG | + | tig0032678:29186-29205 | Msa1449730:intergenic | 30.0% | |
| AAATGATATTGATGAGTGTG+GGG | - | tig0032678:29210-29229 | Msa1449730:intron | 30.0% | |
| AAGACTTGGAGTAAAGATAA+CGG | - | tig0032678:29259-29278 | Msa1449730:intron | 30.0% | |
| !!! | TTGCTTTTTCTTTCCATCTT+TGG | - | tig0032678:29312-29331 | Msa1449730:intron | 30.0% |
| TGGATAAGTTAGTACTTAGT+AGG | + | tig0032678:29448-29467 | Msa1449730:intergenic | 30.0% | |
| TGGGAATGAAATGCTTTATA+TGG | + | tig0032678:29496-29515 | Msa1449730:intergenic | 30.0% | |
| ! | AACAAGAAGTATGACGTTAT+TGG | + | tig0032678:29567-29586 | Msa1449730:intergenic | 30.0% |
| TAGAAGATTATGCTTCTCAA+CGG | - | tig0032678:29634-29653 | Msa1449730:intron | 30.0% | |
| ! | AACGTCATTTGAGTTATGCA+TGG | + | tig0032678:27295-27314 | Msa1449730:intergenic | 35.0% |
| AATGACGTTCTTATAGTGAC+CGG | - | tig0032678:27306-27325 | Msa1449730:intron | 35.0% | |
| ATATACCTGTCGTAACAAAC+AGG | - | tig0032678:27763-27782 | Msa1449730:intron | 35.0% | |
| ATGATTGAGCTTAGCAGATT+TGG | + | tig0032678:27789-27808 | Msa1449730:intergenic | 35.0% | |
| AAAAAAAGAGACAGTCCATC+AGG | - | tig0032678:27940-27959 | Msa1449730:intron | 35.0% | |
| AAAAAAGAGACAGTCCATCA+GGG | - | tig0032678:27941-27960 | Msa1449730:intron | 35.0% | |
| AACAAGGCAATTGGAACAAA+AGG | - | tig0032678:28031-28050 | Msa1449730:intron | 35.0% | |
| AGTTGTACCGTAAAACCAAA+AGG | + | tig0032678:28165-28184 | Msa1449730:intergenic | 35.0% | |
| GAAACTGAGTAGGTCATAAA+TGG | + | tig0032678:28987-29006 | Msa1449730:intergenic | 35.0% | |
| GATGATCATCCTTACTACTT+TGG | - | tig0032678:29129-29148 | Msa1449730:intron | 35.0% | |
| TTGAAAGACCCAAAGTAGTA+AGG | + | tig0032678:29141-29160 | Msa1449730:intergenic | 35.0% | |
| CAGTTTCACGTTATAAGACT+TGG | - | tig0032678:29245-29264 | Msa1449730:intron | 35.0% | |
| AAAAGCAATGCTGGTACTTT+GGG | + | tig0032678:29300-29319 | Msa1449730:intergenic | 35.0% | |
| AAAAAGCAATGCTGGTACTT+TGG | + | tig0032678:29301-29320 | Msa1449730:intergenic | 35.0% | |
| ATGGAAAGAAAAAGCAATGC+TGG | + | tig0032678:29309-29328 | Msa1449730:intergenic | 35.0% | |
| AAGGAAGAAAAAGCCAAAGA+TGG | + | tig0032678:29328-29347 | Msa1449730:intergenic | 35.0% | |
| ! | TTCCTTTTTGACCAGTTTCT+GGG | - | tig0032678:29342-29361 | Msa1449730:intron | 35.0% |
| AGTTAGTACTTAGTAGGTAC+TGG | + | tig0032678:29442-29461 | Msa1449730:intergenic | 35.0% | |
| ! | GCTAAAGTTTTCAGACAACA+TGG | - | tig0032678:29539-29558 | Msa1449730:intron | 35.0% |
| AGAAGATTATGCTTCTCAAC+GGG | - | tig0032678:29635-29654 | Msa1449730:intron | 35.0% | |
| ACATAATGATTGGAACATCG+AGG | + | tig0032678:29707-29726 | Msa1449730:intergenic | 35.0% | |
| GGGGGTGAAAACAGTAATAA+AGG | + | tig0032678:27180-27199 | Msa1449730:intergenic | 40.0% | |
| TATTATTCTCTCGGTCTCAC+CGG | + | tig0032678:27328-27347 | Msa1449730:intergenic | 40.0% | |
| GATCAATATAGGATCCCTGA+TGG | + | tig0032678:27958-27977 | Msa1449730:intergenic | 40.0% | |
| AGGTACCCAATCTCATATCT+AGG | - | tig0032678:28051-28070 | Msa1449730:intron | 40.0% | |
| GATGGCCTAGATATGAGATT+GGG | + | tig0032678:28059-28078 | Msa1449730:intergenic | 40.0% | |
| TAATCGTGTGACTCACTTAG+TGG | - | tig0032678:29063-29082 | Msa1449730:intron | 40.0% | |
| GTAGTAAGGATGATCATCCT+CGG | + | tig0032678:29127-29146 | Msa1449730:intergenic | 40.0% | |
| !! | GTACTTTGGGACTGAATTTC+TGG | + | tig0032678:29287-29306 | Msa1449730:intergenic | 40.0% |
| ! | CTTCCTTTTTGACCAGTTTC+TGG | - | tig0032678:29341-29360 | Msa1449730:intron | 40.0% |
| ACTGGACAAGAGGACAATAA+AGG | + | tig0032678:29424-29443 | Msa1449730:intergenic | 40.0% | |
| ! | CTCAGTCTTCTACGTTTTCT+GGG | - | tig0032678:29596-29615 | Msa1449730:intron | 40.0% |
| TAATGATTGGAACATCGAGG+TGG | + | tig0032678:29704-29723 | Msa1449730:intergenic | 40.0% | |
| ! | TTTCCCATGATGGGAAAAGC+TGG | - | tig0032678:27121-27140 | Msa1449730:CDS | 45.0% |
| ! | TTCCCATGATGGGAAAAGCT+GGG | - | tig0032678:27122-27141 | Msa1449730:CDS | 45.0% |
| ! | AACCCAGCTTTTCCCATCAT+GGG | + | tig0032678:27127-27146 | Msa1449730:intergenic | 45.0% |
| ! | TTTGGCCTGTTTGTTACGAC+AGG | + | tig0032678:27771-27790 | Msa1449730:intergenic | 45.0% |
| GGATGGCCTAGATATGAGAT+TGG | + | tig0032678:28060-28079 | Msa1449730:intergenic | 45.0% | |
| !! | TTCGGCGGACTACATTCATA+TGG | - | tig0032678:28869-28888 | Msa1449730:intron | 45.0% |
| CACCCAGAAACTGGTCAAAA+AGG | + | tig0032678:29347-29366 | Msa1449730:intergenic | 45.0% | |
| TTTCTGGGTGTCTTGGCTAA+GGG | - | tig0032678:29357-29376 | Msa1449730:intron | 45.0% | |
| !! | CTTAGTAGGTACTGGACAAG+AGG | + | tig0032678:29434-29453 | Msa1449730:intergenic | 45.0% |
| CCAGAAAACGTAGAAGACTG+AGG | + | tig0032678:29598-29617 | Msa1449730:intergenic | 45.0% | |
| ! | CCTCAGTCTTCTACGTTTTC+TGG | - | tig0032678:29595-29614 | Msa1449730:intron | 45.0% |
| !! | TTAATAATATTCATAAAATA+GGG | + | tig0032678:27262-27281 | Msa1449730:intergenic | 5.0% |
| !!! | AATTTTTTTACTTTTTTTTT+AGG | - | tig0032678:27858-27877 | Msa1449730:intron | 5.0% |
| ! | CAACCCAGCTTTTCCCATCA+TGG | + | tig0032678:27128-27147 | Msa1449730:intergenic | 50.0% |
| ! | ATGGGAAAAGCTGGGTTGAC+TGG | - | tig0032678:27130-27149 | Msa1449730:CDS | 50.0% |
| ATTGATGAGTGTGGGGCACA+TGG | - | tig0032678:29217-29236 | Msa1449730:intron | 50.0% | |
| ! | TGACCAGTTTCTGGGTGTCT+TGG | - | tig0032678:29350-29369 | Msa1449730:intron | 50.0% |
| TAGCCAAGACACCCAGAAAC+TGG | + | tig0032678:29356-29375 | Msa1449730:intergenic | 50.0% | |
| ! | GTTTCTGGGTGTCTTGGCTA+AGG | - | tig0032678:29356-29375 | Msa1449730:intron | 50.0% |
| TGGAACATCGAGGTGGCTGA+AGG | + | tig0032678:29697-29716 | Msa1449730:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032678 | gene | 27097 | 29728 | 27097 | ID=Msa1449730;Name=Msa1449730 |
| tig0032678 | mRNA | 27097 | 29728 | 27097 | ID=Msa1449730-mRNA-1;Parent=Msa1449730;Name=Msa1449730-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0|0.5|1|1|2|0|60 |
| tig0032678 | exon | 29674 | 29728 | 29674 | ID=Msa1449730-mRNA-1:exon:17099;Parent=Msa1449730-mRNA-1 |
| tig0032678 | exon | 27097 | 27224 | 27097 | ID=Msa1449730-mRNA-1:exon:17098;Parent=Msa1449730-mRNA-1 |
| tig0032678 | CDS | 29674 | 29728 | 29674 | ID=Msa1449730-mRNA-1:cds;Parent=Msa1449730-mRNA-1 |
| tig0032678 | CDS | 27097 | 27224 | 27097 | ID=Msa1449730-mRNA-1:cds;Parent=Msa1449730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
