Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799700 | sp|Q9XI31|GLYI4_ARATH | 58.993 | 139 | 53 | 1 | 25 | 163 | 9 | 143 | 4.70e-57 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799700 | G7KGE7 | 96.135 | 207 | 8 | 0 | 1 | 207 | 1 | 207 | 1.67e-147 | 417 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044100 | Msa0799700 | 0.811733 | 6.040023e-51 | -8.615850e-47 |
| Msa0095540 | Msa0799700 | 0.807210 | 5.650685e-50 | -8.615850e-47 |
| Msa0609430 | Msa0799700 | 0.802086 | 6.629976e-49 | -8.615850e-47 |
| Msa0611380 | Msa0799700 | 0.882229 | 1.241337e-70 | -8.615850e-47 |
| Msa0618180 | Msa0799700 | 0.822127 | 2.796615e-53 | -8.615850e-47 |
| Msa0618220 | Msa0799700 | 0.833508 | 5.123409e-56 | -8.615850e-47 |
| Msa0618290 | Msa0799700 | 0.807701 | 4.445166e-50 | -8.615850e-47 |
| Msa0619990 | Msa0799700 | 0.800588 | 1.343526e-48 | -8.615850e-47 |
| Msa0628640 | Msa0799700 | 0.886832 | 2.425632e-72 | -8.615850e-47 |
| Msa0631120 | Msa0799700 | 0.853980 | 1.668685e-61 | -8.615850e-47 |
| Msa0666030 | Msa0799700 | 0.846057 | 2.758874e-59 | -8.615850e-47 |
| Msa0669340 | Msa0799700 | 0.848208 | 7.097187e-60 | -8.615850e-47 |
| Msa0684500 | Msa0799700 | 0.801316 | 9.538711e-49 | -8.615850e-47 |
| Msa0692060 | Msa0799700 | 0.800441 | 1.439417e-48 | -8.615850e-47 |
| Msa0701970 | Msa0799700 | 0.857616 | 1.446119e-62 | -8.615850e-47 |
| Msa0716450 | Msa0799700 | 0.855267 | 7.075857e-62 | -8.615850e-47 |
| Msa0717260 | Msa0799700 | 0.878817 | 2.065255e-69 | -8.615850e-47 |
| Msa0734230 | Msa0799700 | 0.847978 | 8.213591e-60 | -8.615850e-47 |
| Msa0758320 | Msa0799700 | 0.893054 | 8.984112e-75 | -8.615850e-47 |
| Msa0775440 | Msa0799700 | 0.836071 | 1.160057e-56 | -8.615850e-47 |
| Msa0799030 | Msa0799700 | 0.860670 | 1.756383e-63 | -8.615850e-47 |
| Msa0799700 | Msa0810020 | 0.812560 | 3.986665e-51 | -8.615850e-47 |
| Msa0799700 | Msa0812820 | 0.842856 | 2.003043e-58 | -8.615850e-47 |
| Msa0799700 | Msa0822990 | 0.807053 | 6.099082e-50 | -8.615850e-47 |
| Msa0799700 | Msa0837440 | 0.831112 | 2.008119e-55 | -8.615850e-47 |
| Msa0799700 | Msa0837980 | 0.885802 | 5.940236e-72 | -8.615850e-47 |
| Msa0799700 | Msa0853320 | 0.864856 | 8.997910e-65 | -8.615850e-47 |
| Msa0799700 | Msa0880710 | 0.800535 | 1.376901e-48 | -8.615850e-47 |
| Msa0799700 | Msa0936270 | 0.812012 | 5.252167e-51 | -8.615850e-47 |
| Msa0799700 | Msa0944770 | 0.801527 | 8.635012e-49 | -8.615850e-47 |
| Msa0799700 | Msa0951710 | 0.805054 | 1.606667e-49 | -8.615850e-47 |
| Msa0799700 | Msa0981010 | 0.817204 | 3.722576e-52 | -8.615850e-47 |
| Msa0799700 | Msa1002620 | 0.840135 | 1.043563e-57 | -8.615850e-47 |
| Msa0799700 | Msa1033560 | 0.829353 | 5.397058e-55 | -8.615850e-47 |
| Msa0799700 | Msa1113850 | 0.840048 | 1.099406e-57 | -8.615850e-47 |
| Msa0799700 | Msa1160400 | 0.834915 | 2.274134e-56 | -8.615850e-47 |
| Msa0799700 | Msa1172670 | 0.800334 | 1.513511e-48 | -8.615850e-47 |
| Msa0799700 | Msa1190120 | 0.833392 | 5.475016e-56 | -8.615850e-47 |
| Msa0799700 | Msa1197590 | 0.803045 | 4.203470e-49 | -8.615850e-47 |
| Msa0799700 | Msa1203000 | 0.849379 | 3.358519e-60 | -8.615850e-47 |
| Msa0799700 | Msa1211550 | 0.830347 | 3.091236e-55 | -8.615850e-47 |
| Msa0799700 | Msa1217940 | 0.827100 | 1.884588e-54 | -8.615850e-47 |
| Msa0799700 | Msa1219260 | 0.843203 | 1.618930e-58 | -8.615850e-47 |
| Msa0799700 | Msa1227950 | 0.815248 | 1.018973e-51 | -8.615850e-47 |
| Msa0799700 | Msa1227970 | 0.806514 | 7.927189e-50 | -8.615850e-47 |
| Msa0799700 | Msa1254700 | 0.805881 | 1.077773e-49 | -8.615850e-47 |
| Msa0799700 | Msa1255280 | 0.851704 | 7.461300e-61 | -8.615850e-47 |
| Msa0799700 | Msa1258050 | 0.859894 | 3.015854e-63 | -8.615850e-47 |
| Msa0799700 | Msa1266960 | 0.850868 | 1.285388e-60 | -8.615850e-47 |
| Msa0799700 | Msa1291870 | 0.805127 | 1.550901e-49 | -8.615850e-47 |
| Msa0799700 | Msa1329920 | 0.812722 | 3.674800e-51 | -8.615850e-47 |
| Msa0799700 | Msa1339940 | 0.827531 | 1.486068e-54 | -8.615850e-47 |
| Msa0799700 | Msa1369700 | 0.828256 | 9.945172e-55 | -8.615850e-47 |
| Msa0799700 | Msa1395870 | 0.817033 | 4.066296e-52 | -8.615850e-47 |
| Msa0799700 | Msa1397250 | 0.810000 | 1.432902e-50 | -8.615850e-47 |
| Msa0799700 | Msa1397340 | 0.822469 | 2.330008e-53 | -8.615850e-47 |
| Msa0799700 | Msa1399560 | 0.849497 | 3.112906e-60 | -8.615850e-47 |
| Msa0799700 | Msa1401150 | 0.809186 | 2.143069e-50 | -8.615850e-47 |
| Msa0799700 | Msa1423450 | 0.805339 | 1.400535e-49 | -8.615850e-47 |
| Msa0799700 | Msa1437190 | 0.815248 | 1.019055e-51 | -8.615850e-47 |
| Msa0799700 | Msa1440340 | 0.801899 | 7.240820e-49 | -8.615850e-47 |
| Msa0799700 | Msa1443840 | 0.843557 | 1.302262e-58 | -8.615850e-47 |
| Msa0799700 | Msa1449730 | 0.800247 | 1.576173e-48 | -8.615850e-47 |
| Msa0799700 | Msa1452060 | 0.828614 | 8.152892e-55 | -8.615850e-47 |
| Msa0799700 | Msa1460380 | 0.827706 | 1.349164e-54 | -8.615850e-47 |
| Msa0799700 | Msa1460890 | 0.819502 | 1.122745e-52 | -8.615850e-47 |
| Msa0141100 | Msa0799700 | 0.859029 | 5.487453e-63 | -8.615850e-47 |
| Msa0183750 | Msa0799700 | 0.816487 | 5.391212e-52 | -8.615850e-47 |
| Msa0191040 | Msa0799700 | 0.839291 | 1.729663e-57 | -8.615850e-47 |
| Msa0220300 | Msa0799700 | 0.816900 | 4.356372e-52 | -8.615850e-47 |
| Msa0233340 | Msa0799700 | 0.839518 | 1.510753e-57 | -8.615850e-47 |
| Msa0236440 | Msa0799700 | 0.829487 | 5.008714e-55 | -8.615850e-47 |
| Msa0374850 | Msa0799700 | 0.859319 | 4.489499e-63 | -8.615850e-47 |
| Msa0375090 | Msa0799700 | 0.850019 | 2.224830e-60 | -8.615850e-47 |
| Msa0385670 | Msa0799700 | 0.804679 | 1.924359e-49 | -8.615850e-47 |
| Msa0423360 | Msa0799700 | -0.806388 | 8.428599e-50 | -8.615850e-47 |
| Msa0470340 | Msa0799700 | 0.838377 | 2.982321e-57 | -8.615850e-47 |
| Msa0470860 | Msa0799700 | 0.839656 | 1.390522e-57 | -8.615850e-47 |
| Msa0480950 | Msa0799700 | 0.858461 | 8.109303e-63 | -8.615850e-47 |
| Msa0481110 | Msa0799700 | 0.824753 | 6.802433e-54 | -8.615850e-47 |
| Msa0251240 | Msa0799700 | 0.810657 | 1.033754e-50 | -8.615850e-47 |
| Msa0266450 | Msa0799700 | 0.806052 | 9.921769e-50 | -8.615850e-47 |
| Msa0271040 | Msa0799700 | 0.822383 | 2.440072e-53 | -8.615850e-47 |
| Msa0309350 | Msa0799700 | 0.826450 | 2.694853e-54 | -8.615850e-47 |
| Msa0311690 | Msa0799700 | 0.829228 | 5.788294e-55 | -8.615850e-47 |
| Msa0315250 | Msa0799700 | 0.824904 | 6.268314e-54 | -8.615850e-47 |
| Msa0326540 | Msa0799700 | 0.802711 | 4.929124e-49 | -8.615850e-47 |
| Msa0505360 | Msa0799700 | 0.801869 | 7.345554e-49 | -8.615850e-47 |
| Msa0520510 | Msa0799700 | 0.802281 | 6.043806e-49 | -8.615850e-47 |
| Msa0531430 | Msa0799700 | 0.866488 | 2.748399e-65 | -8.615850e-47 |
| Msa0534570 | Msa0799700 | 0.825760 | 3.931500e-54 | -8.615850e-47 |
| Msa0534590 | Msa0799700 | 0.865951 | 4.066153e-65 | -8.615850e-47 |
| Msa0565600 | Msa0799700 | 0.856753 | 2.598937e-62 | -8.615850e-47 |
| Msa0590800 | Msa0799700 | 0.843312 | 1.513970e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799700 | MtrunA17_Chr5g0405171 | 96.135 | 207 | 8 | 0 | 1 | 207 | 1 | 207 | 3.21e-151 | 417 |
| Msa0799700 | MtrunA17_Chr8g0372141 | 76.923 | 195 | 42 | 3 | 14 | 207 | 1 | 193 | 4.80e-108 | 308 |
| Msa0799700 | MtrunA17_Chr2g0277151 | 53.846 | 182 | 80 | 1 | 25 | 206 | 3 | 180 | 4.89e-66 | 201 |
| Msa0799700 | MtrunA17_Chr4g0063501 | 58.571 | 140 | 54 | 1 | 25 | 164 | 5 | 140 | 1.58e-56 | 176 |
| Msa0799700 | MtrunA17_Chr4g0003581 | 55.479 | 146 | 57 | 2 | 25 | 168 | 9 | 148 | 3.66e-55 | 173 |
| Msa0799700 | MtrunA17_Chr2g0332851 | 54.225 | 142 | 60 | 2 | 25 | 165 | 9 | 146 | 3.98e-51 | 163 |
| Msa0799700 | MtrunA17_Chr2g0332841 | 52.817 | 142 | 62 | 2 | 25 | 165 | 9 | 146 | 4.48e-49 | 157 |
| Msa0799700 | MtrunA17_Chr4g0020201 | 48.000 | 150 | 76 | 2 | 17 | 165 | 26 | 174 | 6.18e-48 | 155 |
| Msa0799700 | MtrunA17_Chr1g0212241 | 46.617 | 133 | 66 | 2 | 42 | 173 | 3 | 131 | 1.66e-39 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0799700 | AT1G80160.1 | 57.639 | 144 | 57 | 2 | 25 | 168 | 9 | 148 | 3.86e-58 | 181 |
| Msa0799700 | AT1G15380.2 | 58.993 | 139 | 53 | 1 | 25 | 163 | 9 | 143 | 4.77e-58 | 181 |
| Msa0799700 | AT1G15380.1 | 58.993 | 139 | 53 | 1 | 25 | 163 | 9 | 143 | 4.77e-58 | 181 |
| Msa0799700 | AT1G80160.3 | 57.447 | 141 | 56 | 2 | 25 | 165 | 50 | 186 | 1.20e-57 | 181 |
| Msa0799700 | AT2G28420.1 | 52.778 | 144 | 64 | 2 | 26 | 168 | 17 | 157 | 2.91e-52 | 166 |
| Msa0799700 | AT1G80160.2 | 53.000 | 100 | 43 | 2 | 69 | 168 | 27 | 122 | 5.33e-33 | 116 |
Find 44 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATCTTCTTTCAAATTTAC+TGG | 0.206523 | 5_3:-12984414 | Msa0799700:CDS |
| CATATGGTGTTTAAAATATA+TGG | 0.250719 | 5_3:-12983334 | Msa0799700:three_prime_UTR |
| GGTAGAAGATGAAGGAATTA+AGG | 0.253602 | 5_3:-12983772 | Msa0799700:CDS |
| TGGTTATCCTTGGGATTAAT+AGG | 0.256572 | 5_3:+12984192 | None:intergenic |
| CTCTTAAAGCTATGGCTTCT+AGG | 0.268260 | 5_3:+12983645 | None:intergenic |
| CCCAAAACATCCTCATAAAA+TGG | 0.272466 | 5_3:+12984456 | None:intergenic |
| AAGATATGTTGGAGGATATT+AGG | 0.278431 | 5_3:-12983434 | Msa0799700:three_prime_UTR |
| GAGAGAACAAAAGTGGAAAA+TGG | 0.331776 | 5_3:-12984568 | Msa0799700:CDS |
| TAAGAAGAGATTAGAAGAAA+AGG | 0.341886 | 5_3:-12983817 | Msa0799700:CDS |
| GAAGCAGTGCATGAAGAAAT+AGG | 0.352827 | 5_3:+12983675 | None:intergenic |
| GAATCCTCCACACTTGGAAT+TGG | 0.363613 | 5_3:+12983614 | None:intergenic |
| CATGAAGAAATAGGAATGAT+TGG | 0.374847 | 5_3:+12983684 | None:intergenic |
| AAGAAGAGATTAGAAGAAAA+GGG | 0.385631 | 5_3:-12983816 | Msa0799700:CDS |
| GAAAGAAGATGGTCGTTTGA+TGG | 0.396618 | 5_3:+12984425 | None:intergenic |
| AGCTCAATCATGTAGCCATC+AGG | 0.416541 | 5_3:+12983726 | None:intergenic |
| AATGAAATATGTTACAGCTT+TGG | 0.418600 | 5_3:-12983793 | Msa0799700:CDS |
| TGTCTTGTATTTGTAACATA+TGG | 0.419689 | 5_3:-12983350 | Msa0799700:three_prime_UTR |
| GAATGAGATATGGTTATCCT+TGG | 0.430947 | 5_3:+12984182 | None:intergenic |
| GGATAACCATATCTCATTCC+AGG | 0.432811 | 5_3:-12984178 | Msa0799700:intron |
| ATTCATTGAGAGAACAAAAG+TGG | 0.461029 | 5_3:-12984575 | Msa0799700:CDS |
| GTATCAAATTCATCAATGTC+TGG | 0.469039 | 5_3:+12984234 | None:intergenic |
| GAATGTAAAATTGTTAGTCT+TGG | 0.473770 | 5_3:-12983412 | Msa0799700:three_prime_UTR |
| AAAGAAGATGGTCGTTTGAT+GGG | 0.476824 | 5_3:+12984426 | None:intergenic |
| CCAGTAAATTTGAAAGAAGA+TGG | 0.495096 | 5_3:+12984414 | None:intergenic |
| ATGAAGAAATAGGAATGATT+GGG | 0.499317 | 5_3:+12983685 | None:intergenic |
| CTGCATGAATCCTCCACACT+TGG | 0.500461 | 5_3:+12983608 | None:intergenic |
| AATGAGATATGGTTATCCTT+GGG | 0.506176 | 5_3:+12984183 | None:intergenic |
| CTTTCAAATTTACTGGAGCA+TGG | 0.508696 | 5_3:-12984407 | Msa0799700:intron |
| AAGTAGATCTCTTAAAGCTA+TGG | 0.522280 | 5_3:+12983637 | None:intergenic |
| ACAGCTTTGGTAGAAGATGA+AGG | 0.526294 | 5_3:-12983780 | Msa0799700:CDS |
| ATTCATGCAGAATGTTATGA+TGG | 0.532345 | 5_3:-12983595 | Msa0799700:CDS |
| AGAGCAGAGTGGTGGGTCCA+AGG | 0.539966 | 5_3:-12983379 | Msa0799700:three_prime_UTR |
| TCATGTAGCCATCAGGGTCA+TGG | 0.545015 | 5_3:+12983733 | None:intergenic |
| TAATTGTGAGAGCAGAGTGG+TGG | 0.567120 | 5_3:-12983387 | Msa0799700:three_prime_UTR |
| GTGTTCTTCCATGACCCTGA+TGG | 0.589307 | 5_3:-12983741 | Msa0799700:CDS |
| ACATGATTCAATGAGAGCAA+TGG | 0.593307 | 5_3:+12984513 | None:intergenic |
| AACGAGGCCTATTAATCCCA+AGG | 0.600112 | 5_3:-12984199 | Msa0799700:CDS |
| GCTCAATCATGTAGCCATCA+GGG | 0.602960 | 5_3:+12983727 | None:intergenic |
| TCTACTTCCAATTCCAAGTG+TGG | 0.614729 | 5_3:-12983621 | Msa0799700:CDS |
| AATTGTGAGAGCAGAGTGGT+GGG | 0.617021 | 5_3:-12983386 | Msa0799700:three_prime_UTR |
| ACTTCCAATTCCAAGTGTGG+AGG | 0.621587 | 5_3:-12983618 | Msa0799700:CDS |
| TATGATGGAAAGCTTGAGCA+TGG | 0.636263 | 5_3:-12983580 | Msa0799700:CDS |
| GTTTAATTGTGAGAGCAGAG+TGG | 0.701131 | 5_3:-12983390 | Msa0799700:three_prime_UTR |
| ATACTTACATGAATGAAACG+AGG | 0.744566 | 5_3:-12984215 | Msa0799700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCTTATTTTTTTATATTTT+TGG | - | chr5_3:12983415-12983434 | Msa0799700:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAAGATATGT+TGG | - | chr5_3:12984352-12984371 | Msa0799700:intron | 10.0% |
| !!! | AGCTTATTTTTTTATATTTT+TGG | - | chr5_3:12983415-12983434 | Msa0799700:three_prime_UTR | 10.0% |
| !! | AAAAAAAAAAAAAGATATGT+TGG | - | chr5_3:12984352-12984371 | Msa0799700:intron | 10.0% |
| !!! | TATAAATCTTTATTTTTACC+TGG | + | chr5_3:12983640-12983659 | None:intergenic | 15.0% |
| !!! | AATATAGTCATTTTTTGAAA+TGG | - | chr5_3:12983669-12983688 | Msa0799700:CDS | 15.0% |
| !!! | TATATGGTTAAATATGTTTT+TGG | - | chr5_3:12984479-12984498 | Msa0799700:CDS | 15.0% |
| !!! | TATAAATCTTTATTTTTACC+TGG | + | chr5_3:12983640-12983659 | None:intergenic | 15.0% |
| !!! | AATATAGTCATTTTTTGAAA+TGG | - | chr5_3:12983669-12983688 | Msa0799700:CDS | 15.0% |
| !!! | TATATGGTTAAATATGTTTT+TGG | - | chr5_3:12984479-12984498 | Msa0799700:CDS | 15.0% |
| !!! | TTTTGCAGGTTTTATAATTA+TGG | - | chr5_3:12983515-12983534 | Msa0799700:three_prime_UTR | 20.0% |
| !!! | AGGTTTTATAATTATGGTAT+TGG | - | chr5_3:12983521-12983540 | Msa0799700:three_prime_UTR | 20.0% |
| !! | GCACATAATAATTATAACAA+AGG | + | chr5_3:12983831-12983850 | None:intergenic | 20.0% |
| !! | TGTTATAATTATTATGTGCA+TGG | - | chr5_3:12983832-12983851 | Msa0799700:CDS | 20.0% |
| !!! | CCATGTTGTATATAAATTTT+TGG | + | chr5_3:12983930-12983949 | None:intergenic | 20.0% |
| !! | CCAAAAATTTATATACAACA+TGG | - | chr5_3:12983927-12983946 | Msa0799700:intron | 20.0% |
| !! | AAAAAAAAAAGATATGTTGG+AGG | - | chr5_3:12984355-12984374 | Msa0799700:intron | 20.0% |
| !!! | CATATGGTGTTTAAAATATA+TGG | - | chr5_3:12984463-12984482 | Msa0799700:CDS | 20.0% |
| !!! | AGTTGAAGAAAAATTTTAGA+AGG | + | chr5_3:12984537-12984556 | None:intergenic | 20.0% |
| !!! | TTTTGCAGGTTTTATAATTA+TGG | - | chr5_3:12983515-12983534 | Msa0799700:three_prime_UTR | 20.0% |
| !!! | AGGTTTTATAATTATGGTAT+TGG | - | chr5_3:12983521-12983540 | Msa0799700:three_prime_UTR | 20.0% |
| !! | GCACATAATAATTATAACAA+AGG | + | chr5_3:12983831-12983850 | None:intergenic | 20.0% |
| !! | TGTTATAATTATTATGTGCA+TGG | - | chr5_3:12983832-12983851 | Msa0799700:CDS | 20.0% |
| !!! | CCATGTTGTATATAAATTTT+TGG | + | chr5_3:12983930-12983949 | None:intergenic | 20.0% |
| !! | CCAAAAATTTATATACAACA+TGG | - | chr5_3:12983927-12983946 | Msa0799700:intron | 20.0% |
| !! | AAAAAAAAAAGATATGTTGG+AGG | - | chr5_3:12984355-12984374 | Msa0799700:intron | 20.0% |
| !!! | CATATGGTGTTTAAAATATA+TGG | - | chr5_3:12984463-12984482 | Msa0799700:CDS | 20.0% |
| !!! | AGTTGAAGAAAAATTTTAGA+AGG | + | chr5_3:12984537-12984556 | None:intergenic | 20.0% |
| !!! | GCTTTTAACTTTTTTTTTGC+AGG | - | chr5_3:12983501-12983520 | Msa0799700:three_prime_UTR | 25.0% |
| !!! | GTCATTTTTTGAAATGGTTA+TGG | - | chr5_3:12983675-12983694 | Msa0799700:CDS | 25.0% |
| ! | AAAGGTCATAATACAAAAAG+TGG | + | chr5_3:12983813-12983832 | None:intergenic | 25.0% |
| ! | TAAGTAAATAATTAACCGCA+TGG | - | chr5_3:12983864-12983883 | Msa0799700:intron | 25.0% |
| ! | TAAGAAGAGATTAGAAGAAA+AGG | - | chr5_3:12983980-12983999 | Msa0799700:intron | 25.0% |
| ! | AAGAAGAGATTAGAAGAAAA+GGG | - | chr5_3:12983981-12984000 | Msa0799700:intron | 25.0% |
| ! | AATGAAATATGTTACAGCTT+TGG | - | chr5_3:12984004-12984023 | Msa0799700:intron | 25.0% |
| ! | ATGAAGAAATAGGAATGATT+GGG | + | chr5_3:12984115-12984134 | None:intergenic | 25.0% |
| !! | GAATGTAAAATTGTTAGTCT+TGG | - | chr5_3:12984385-12984404 | Msa0799700:intron | 25.0% |
| ! | TGTCTTGTATTTGTAACATA+TGG | - | chr5_3:12984447-12984466 | Msa0799700:CDS | 25.0% |
| !!! | GCTTTTAACTTTTTTTTTGC+AGG | - | chr5_3:12983501-12983520 | Msa0799700:three_prime_UTR | 25.0% |
| !!! | GTCATTTTTTGAAATGGTTA+TGG | - | chr5_3:12983675-12983694 | Msa0799700:CDS | 25.0% |
| ! | AAAGGTCATAATACAAAAAG+TGG | + | chr5_3:12983813-12983832 | None:intergenic | 25.0% |
| ! | TAAGTAAATAATTAACCGCA+TGG | - | chr5_3:12983864-12983883 | Msa0799700:intron | 25.0% |
| ! | TAAGAAGAGATTAGAAGAAA+AGG | - | chr5_3:12983980-12983999 | Msa0799700:intron | 25.0% |
| ! | AAGAAGAGATTAGAAGAAAA+GGG | - | chr5_3:12983981-12984000 | Msa0799700:intron | 25.0% |
| ! | AATGAAATATGTTACAGCTT+TGG | - | chr5_3:12984004-12984023 | Msa0799700:intron | 25.0% |
| ! | ATGAAGAAATAGGAATGATT+GGG | + | chr5_3:12984115-12984134 | None:intergenic | 25.0% |
| !! | GAATGTAAAATTGTTAGTCT+TGG | - | chr5_3:12984385-12984404 | Msa0799700:intron | 25.0% |
| ! | TGTCTTGTATTTGTAACATA+TGG | - | chr5_3:12984447-12984466 | Msa0799700:CDS | 25.0% |
| ATTCATTGAGAGAACAAAAG+TGG | - | chr5_3:12983222-12983241 | Msa0799700:three_prime_UTR | 30.0% | |
| ! | CCATTTTATGAGGATGTTTT+GGG | - | chr5_3:12983341-12983360 | Msa0799700:three_prime_UTR | 30.0% |
| CCAGTAAATTTGAAAGAAGA+TGG | + | chr5_3:12983386-12983405 | None:intergenic | 30.0% | |
| CCATCTTCTTTCAAATTTAC+TGG | - | chr5_3:12983383-12983402 | Msa0799700:three_prime_UTR | 30.0% | |
| GTATCAAATTCATCAATGTC+TGG | + | chr5_3:12983566-12983585 | None:intergenic | 30.0% | |
| ATACTTACATGAATGAAACG+AGG | - | chr5_3:12983582-12983601 | Msa0799700:CDS | 30.0% | |
| AATGAGATATGGTTATCCTT+GGG | + | chr5_3:12983617-12983636 | None:intergenic | 30.0% | |
| ! | TTTTTACCTGGAATGAGATA+TGG | + | chr5_3:12983628-12983647 | None:intergenic | 30.0% |
| ATGGAAATCTATGCATATGT+AGG | - | chr5_3:12983729-12983748 | Msa0799700:CDS | 30.0% | |
| TGGAAATCTATGCATATGTA+GGG | - | chr5_3:12983730-12983749 | Msa0799700:CDS | 30.0% | |
| CATGAAGAAATAGGAATGAT+TGG | + | chr5_3:12984116-12984135 | None:intergenic | 30.0% | |
| AAGTAGATCTCTTAAAGCTA+TGG | + | chr5_3:12984163-12984182 | None:intergenic | 30.0% | |
| ATTCATGCAGAATGTTATGA+TGG | - | chr5_3:12984202-12984221 | Msa0799700:CDS | 30.0% | |
| AAGATATGTTGGAGGATATT+AGG | - | chr5_3:12984363-12984382 | Msa0799700:intron | 30.0% | |
| ! | AATACAAGACAACTTTTCCT+TGG | + | chr5_3:12984438-12984457 | None:intergenic | 30.0% |
| ATTCATTGAGAGAACAAAAG+TGG | - | chr5_3:12983222-12983241 | Msa0799700:three_prime_UTR | 30.0% | |
| ! | CCATTTTATGAGGATGTTTT+GGG | - | chr5_3:12983341-12983360 | Msa0799700:three_prime_UTR | 30.0% |
| CCAGTAAATTTGAAAGAAGA+TGG | + | chr5_3:12983386-12983405 | None:intergenic | 30.0% | |
| CCATCTTCTTTCAAATTTAC+TGG | - | chr5_3:12983383-12983402 | Msa0799700:three_prime_UTR | 30.0% | |
| GTATCAAATTCATCAATGTC+TGG | + | chr5_3:12983566-12983585 | None:intergenic | 30.0% | |
| ATACTTACATGAATGAAACG+AGG | - | chr5_3:12983582-12983601 | Msa0799700:CDS | 30.0% | |
| AATGAGATATGGTTATCCTT+GGG | + | chr5_3:12983617-12983636 | None:intergenic | 30.0% | |
| ! | TTTTTACCTGGAATGAGATA+TGG | + | chr5_3:12983628-12983647 | None:intergenic | 30.0% |
| ATGGAAATCTATGCATATGT+AGG | - | chr5_3:12983729-12983748 | Msa0799700:CDS | 30.0% | |
| TGGAAATCTATGCATATGTA+GGG | - | chr5_3:12983730-12983749 | Msa0799700:CDS | 30.0% | |
| CATGAAGAAATAGGAATGAT+TGG | + | chr5_3:12984116-12984135 | None:intergenic | 30.0% | |
| AAGTAGATCTCTTAAAGCTA+TGG | + | chr5_3:12984163-12984182 | None:intergenic | 30.0% | |
| ATTCATGCAGAATGTTATGA+TGG | - | chr5_3:12984202-12984221 | Msa0799700:CDS | 30.0% | |
| AAGATATGTTGGAGGATATT+AGG | - | chr5_3:12984363-12984382 | Msa0799700:intron | 30.0% | |
| ! | AATACAAGACAACTTTTCCT+TGG | + | chr5_3:12984438-12984457 | None:intergenic | 30.0% |
| GAGAGAACAAAAGTGGAAAA+TGG | - | chr5_3:12983229-12983248 | Msa0799700:three_prime_UTR | 35.0% | |
| ACATGATTCAATGAGAGCAA+TGG | + | chr5_3:12983287-12983306 | None:intergenic | 35.0% | |
| ! | TCTTTTGTGTAGATCAGTGT+TGG | - | chr5_3:12983310-12983329 | Msa0799700:three_prime_UTR | 35.0% |
| !!! | GGAATCTATGCCATTTTATG+AGG | - | chr5_3:12983331-12983350 | Msa0799700:three_prime_UTR | 35.0% |
| !! | GCCATTTTATGAGGATGTTT+TGG | - | chr5_3:12983340-12983359 | Msa0799700:three_prime_UTR | 35.0% |
| CCCAAAACATCCTCATAAAA+TGG | + | chr5_3:12983344-12983363 | None:intergenic | 35.0% | |
| AAAGAAGATGGTCGTTTGAT+GGG | + | chr5_3:12983374-12983393 | None:intergenic | 35.0% | |
| CTTTCAAATTTACTGGAGCA+TGG | - | chr5_3:12983390-12983409 | Msa0799700:three_prime_UTR | 35.0% | |
| TGGTTATCCTTGGGATTAAT+AGG | + | chr5_3:12983608-12983627 | None:intergenic | 35.0% | |
| GAATGAGATATGGTTATCCT+TGG | + | chr5_3:12983618-12983637 | None:intergenic | 35.0% | |
| AGCTAAATTTGTGATCCATG+CGG | + | chr5_3:12983882-12983901 | None:intergenic | 35.0% | |
| !!! | ACATGGTTTTTTGCAGTGTA+CGG | - | chr5_3:12983944-12983963 | Msa0799700:intron | 35.0% |
| GGTAGAAGATGAAGGAATTA+AGG | - | chr5_3:12984025-12984044 | Msa0799700:intron | 35.0% | |
| GAGAGAACAAAAGTGGAAAA+TGG | - | chr5_3:12983229-12983248 | Msa0799700:three_prime_UTR | 35.0% | |
| ACATGATTCAATGAGAGCAA+TGG | + | chr5_3:12983287-12983306 | None:intergenic | 35.0% | |
| ! | TCTTTTGTGTAGATCAGTGT+TGG | - | chr5_3:12983310-12983329 | Msa0799700:three_prime_UTR | 35.0% |
| !!! | GGAATCTATGCCATTTTATG+AGG | - | chr5_3:12983331-12983350 | Msa0799700:three_prime_UTR | 35.0% |
| !! | GCCATTTTATGAGGATGTTT+TGG | - | chr5_3:12983340-12983359 | Msa0799700:three_prime_UTR | 35.0% |
| CCCAAAACATCCTCATAAAA+TGG | + | chr5_3:12983344-12983363 | None:intergenic | 35.0% | |
| AAAGAAGATGGTCGTTTGAT+GGG | + | chr5_3:12983374-12983393 | None:intergenic | 35.0% | |
| CTTTCAAATTTACTGGAGCA+TGG | - | chr5_3:12983390-12983409 | Msa0799700:three_prime_UTR | 35.0% | |
| TGGTTATCCTTGGGATTAAT+AGG | + | chr5_3:12983608-12983627 | None:intergenic | 35.0% | |
| GAATGAGATATGGTTATCCT+TGG | + | chr5_3:12983618-12983637 | None:intergenic | 35.0% | |
| AGCTAAATTTGTGATCCATG+CGG | + | chr5_3:12983882-12983901 | None:intergenic | 35.0% | |
| !!! | ACATGGTTTTTTGCAGTGTA+CGG | - | chr5_3:12983944-12983963 | Msa0799700:intron | 35.0% |
| GGTAGAAGATGAAGGAATTA+AGG | - | chr5_3:12984025-12984044 | Msa0799700:intron | 35.0% | |
| GAAAGAAGATGGTCGTTTGA+TGG | + | chr5_3:12983375-12983394 | None:intergenic | 40.0% | |
| GGATAACCATATCTCATTCC+AGG | - | chr5_3:12983619-12983638 | Msa0799700:CDS | 40.0% | |
| ! | ACAGCTTTGGTAGAAGATGA+AGG | - | chr5_3:12984017-12984036 | Msa0799700:intron | 40.0% |
| GAAGCAGTGCATGAAGAAAT+AGG | + | chr5_3:12984125-12984144 | None:intergenic | 40.0% | |
| CTCTTAAAGCTATGGCTTCT+AGG | + | chr5_3:12984155-12984174 | None:intergenic | 40.0% | |
| TCTACTTCCAATTCCAAGTG+TGG | - | chr5_3:12984176-12984195 | Msa0799700:intron | 40.0% | |
| ! | TATGATGGAAAGCTTGAGCA+TGG | - | chr5_3:12984217-12984236 | Msa0799700:CDS | 40.0% |
| GTTTAATTGTGAGAGCAGAG+TGG | - | chr5_3:12984407-12984426 | Msa0799700:intron | 40.0% | |
| GAAAGAAGATGGTCGTTTGA+TGG | + | chr5_3:12983375-12983394 | None:intergenic | 40.0% | |
| GGATAACCATATCTCATTCC+AGG | - | chr5_3:12983619-12983638 | Msa0799700:CDS | 40.0% | |
| ! | ACAGCTTTGGTAGAAGATGA+AGG | - | chr5_3:12984017-12984036 | Msa0799700:intron | 40.0% |
| GAAGCAGTGCATGAAGAAAT+AGG | + | chr5_3:12984125-12984144 | None:intergenic | 40.0% | |
| CTCTTAAAGCTATGGCTTCT+AGG | + | chr5_3:12984155-12984174 | None:intergenic | 40.0% | |
| TCTACTTCCAATTCCAAGTG+TGG | - | chr5_3:12984176-12984195 | Msa0799700:intron | 40.0% | |
| ! | TATGATGGAAAGCTTGAGCA+TGG | - | chr5_3:12984217-12984236 | Msa0799700:CDS | 40.0% |
| GTTTAATTGTGAGAGCAGAG+TGG | - | chr5_3:12984407-12984426 | Msa0799700:intron | 40.0% | |
| AACGAGGCCTATTAATCCCA+AGG | - | chr5_3:12983598-12983617 | Msa0799700:CDS | 45.0% | |
| GCTCAATCATGTAGCCATCA+GGG | + | chr5_3:12984073-12984092 | None:intergenic | 45.0% | |
| AGCTCAATCATGTAGCCATC+AGG | + | chr5_3:12984074-12984093 | None:intergenic | 45.0% | |
| ACTTCCAATTCCAAGTGTGG+AGG | - | chr5_3:12984179-12984198 | Msa0799700:CDS | 45.0% | |
| GAATCCTCCACACTTGGAAT+TGG | + | chr5_3:12984186-12984205 | None:intergenic | 45.0% | |
| TAATTGTGAGAGCAGAGTGG+TGG | - | chr5_3:12984410-12984429 | Msa0799700:CDS | 45.0% | |
| AATTGTGAGAGCAGAGTGGT+GGG | - | chr5_3:12984411-12984430 | Msa0799700:CDS | 45.0% | |
| AACGAGGCCTATTAATCCCA+AGG | - | chr5_3:12983598-12983617 | Msa0799700:CDS | 45.0% | |
| GCTCAATCATGTAGCCATCA+GGG | + | chr5_3:12984073-12984092 | None:intergenic | 45.0% | |
| AGCTCAATCATGTAGCCATC+AGG | + | chr5_3:12984074-12984093 | None:intergenic | 45.0% | |
| ACTTCCAATTCCAAGTGTGG+AGG | - | chr5_3:12984179-12984198 | Msa0799700:CDS | 45.0% | |
| GAATCCTCCACACTTGGAAT+TGG | + | chr5_3:12984186-12984205 | None:intergenic | 45.0% | |
| TAATTGTGAGAGCAGAGTGG+TGG | - | chr5_3:12984410-12984429 | Msa0799700:CDS | 45.0% | |
| AATTGTGAGAGCAGAGTGGT+GGG | - | chr5_3:12984411-12984430 | Msa0799700:CDS | 45.0% | |
| !! | ATAAATTTATATACTAAAAA+TGG | - | chr5_3:12983710-12983729 | Msa0799700:CDS | 5.0% |
| !!! | TATTTTATATAACAAAAAAA+AGG | + | chr5_3:12984299-12984318 | None:intergenic | 5.0% |
| !! | ATAAATTTATATACTAAAAA+TGG | - | chr5_3:12983710-12983729 | Msa0799700:CDS | 5.0% |
| !!! | TATTTTATATAACAAAAAAA+AGG | + | chr5_3:12984299-12984318 | None:intergenic | 5.0% |
| GTGTTCTTCCATGACCCTGA+TGG | - | chr5_3:12984056-12984075 | Msa0799700:intron | 50.0% | |
| TCATGTAGCCATCAGGGTCA+TGG | + | chr5_3:12984067-12984086 | None:intergenic | 50.0% | |
| CTGCATGAATCCTCCACACT+TGG | + | chr5_3:12984192-12984211 | None:intergenic | 50.0% | |
| GTGTTCTTCCATGACCCTGA+TGG | - | chr5_3:12984056-12984075 | Msa0799700:intron | 50.0% | |
| TCATGTAGCCATCAGGGTCA+TGG | + | chr5_3:12984067-12984086 | None:intergenic | 50.0% | |
| CTGCATGAATCCTCCACACT+TGG | + | chr5_3:12984192-12984211 | None:intergenic | 50.0% | |
| !! | AGAGCAGAGTGGTGGGTCCA+AGG | - | chr5_3:12984418-12984437 | Msa0799700:CDS | 60.0% |
| !! | AGAGCAGAGTGGTGGGTCCA+AGG | - | chr5_3:12984418-12984437 | Msa0799700:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 12983183 | 12984636 | 12983183 | ID=Msa0799700;Name=Msa0799700 |
| chr5_3 | mRNA | 12983183 | 12984636 | 12983183 | ID=Msa0799700-mRNA-1;Parent=Msa0799700;Name=Msa0799700-mRNA-1;_AED=0.11;_eAED=0.11;_QI=26|1|1|1|1|1|3|374|207 |
| chr5_3 | exon | 12983183 | 12983859 | 12983183 | ID=Msa0799700-mRNA-1:exon:5356;Parent=Msa0799700-mRNA-1 |
| chr5_3 | exon | 12984179 | 12984296 | 12984179 | ID=Msa0799700-mRNA-1:exon:5355;Parent=Msa0799700-mRNA-1 |
| chr5_3 | exon | 12984408 | 12984636 | 12984408 | ID=Msa0799700-mRNA-1:exon:5354;Parent=Msa0799700-mRNA-1 |
| chr5_3 | five_prime_UTR | 12984611 | 12984636 | 12984611 | ID=Msa0799700-mRNA-1:five_prime_utr;Parent=Msa0799700-mRNA-1 |
| chr5_3 | CDS | 12984408 | 12984610 | 12984408 | ID=Msa0799700-mRNA-1:cds;Parent=Msa0799700-mRNA-1 |
| chr5_3 | CDS | 12984179 | 12984296 | 12984179 | ID=Msa0799700-mRNA-1:cds;Parent=Msa0799700-mRNA-1 |
| chr5_3 | CDS | 12983557 | 12983859 | 12983557 | ID=Msa0799700-mRNA-1:cds;Parent=Msa0799700-mRNA-1 |
| chr5_3 | three_prime_UTR | 12983183 | 12983556 | 12983183 | ID=Msa0799700-mRNA-1:three_prime_utr;Parent=Msa0799700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
