Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1203000 | XP_003629468.2 | 98.097 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 0.0 | 945 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1203000 | sp|Q8L7A0|TAUE3_ARATH | 59.915 | 469 | 167 | 6 | 15 | 468 | 13 | 475 | 2.11e-178 | 511 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1203000 | G7LEU1 | 98.097 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 0.0 | 945 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0004880 | Msa1203000 | 0.808069 | 3.712639e-50 | -8.615850e-47 |
Msa0017510 | Msa1203000 | 0.805624 | 1.220282e-49 | -8.615850e-47 |
Msa0036430 | Msa1203000 | 0.811895 | 5.568294e-51 | -8.615850e-47 |
Msa0036960 | Msa1203000 | 0.828307 | 9.666547e-55 | -8.615850e-47 |
Msa0044100 | Msa1203000 | 0.826708 | 2.339468e-54 | -8.615850e-47 |
Msa0072370 | Msa1203000 | 0.815199 | 1.044628e-51 | -8.615850e-47 |
Msa0095540 | Msa1203000 | 0.828140 | 1.060668e-54 | -8.615850e-47 |
Msa0096000 | Msa1203000 | 0.805731 | 1.158439e-49 | -8.615850e-47 |
Msa0611380 | Msa1203000 | 0.878373 | 2.960850e-69 | -8.615850e-47 |
Msa0618180 | Msa1203000 | 0.844374 | 7.863325e-59 | -8.615850e-47 |
Msa0618220 | Msa1203000 | 0.826641 | 2.426591e-54 | -8.615850e-47 |
Msa0618290 | Msa1203000 | 0.814307 | 1.647133e-51 | -8.615850e-47 |
Msa0619990 | Msa1203000 | 0.833913 | 4.058543e-56 | -8.615850e-47 |
Msa0628640 | Msa1203000 | 0.872613 | 2.780825e-67 | -8.615850e-47 |
Msa0631120 | Msa1203000 | 0.907344 | 5.607527e-81 | -8.615850e-47 |
Msa0650070 | Msa1203000 | 0.809350 | 1.975779e-50 | -8.615850e-47 |
Msa0666030 | Msa1203000 | 0.865084 | 7.628095e-65 | -8.615850e-47 |
Msa0669340 | Msa1203000 | 0.890455 | 9.699350e-74 | -8.615850e-47 |
Msa0684500 | Msa1203000 | 0.831275 | 1.830655e-55 | -8.615850e-47 |
Msa0692060 | Msa1203000 | 0.814239 | 1.704926e-51 | -8.615850e-47 |
Msa0701970 | Msa1203000 | 0.825165 | 5.440181e-54 | -8.615850e-47 |
Msa0706420 | Msa1203000 | 0.807881 | 4.070198e-50 | -8.615850e-47 |
Msa0709500 | Msa1203000 | 0.805378 | 1.374154e-49 | -8.615850e-47 |
Msa0716450 | Msa1203000 | 0.885619 | 6.957870e-72 | -8.615850e-47 |
Msa0717260 | Msa1203000 | 0.896085 | 5.171642e-76 | -8.615850e-47 |
Msa0734230 | Msa1203000 | 0.834210 | 3.418820e-56 | -8.615850e-47 |
Msa0741900 | Msa1203000 | 0.808973 | 2.379964e-50 | -8.615850e-47 |
Msa0758320 | Msa1203000 | 0.889561 | 2.168654e-73 | -8.615850e-47 |
Msa0775440 | Msa1203000 | 0.865072 | 7.698110e-65 | -8.615850e-47 |
Msa0787260 | Msa1203000 | 0.822208 | 2.678523e-53 | -8.615850e-47 |
Msa0790850 | Msa1203000 | 0.802600 | 5.194345e-49 | -8.615850e-47 |
Msa0799030 | Msa1203000 | 0.891871 | 2.673281e-74 | -8.615850e-47 |
Msa0799700 | Msa1203000 | 0.849379 | 3.358519e-60 | -8.615850e-47 |
Msa0810020 | Msa1203000 | 0.811055 | 8.477729e-51 | -8.615850e-47 |
Msa0812820 | Msa1203000 | 0.858122 | 1.023120e-62 | -8.615850e-47 |
Msa0822990 | Msa1203000 | 0.826644 | 2.422623e-54 | -8.615850e-47 |
Msa0837440 | Msa1203000 | 0.872855 | 2.306639e-67 | -8.615850e-47 |
Msa0837980 | Msa1203000 | 0.889898 | 1.602624e-73 | -8.615850e-47 |
Msa0130570 | Msa1203000 | 0.819475 | 1.139270e-52 | -8.615850e-47 |
Msa0141100 | Msa1203000 | 0.897557 | 1.252445e-76 | -8.615850e-47 |
Msa0148340 | Msa1203000 | 0.809481 | 1.852018e-50 | -8.615850e-47 |
Msa0153420 | Msa1203000 | 0.818544 | 1.854578e-52 | -8.615850e-47 |
Msa0157290 | Msa1203000 | 0.804930 | 1.705271e-49 | -8.615850e-47 |
Msa0183750 | Msa1203000 | 0.845322 | 4.364969e-59 | -8.615850e-47 |
Msa0191040 | Msa1203000 | 0.854056 | 1.587154e-61 | -8.615850e-47 |
Msa0219190 | Msa1203000 | 0.801742 | 7.798223e-49 | -8.615850e-47 |
Msa0220300 | Msa1203000 | 0.857354 | 1.728138e-62 | -8.615850e-47 |
Msa0225600 | Msa1203000 | 0.813018 | 3.165290e-51 | -8.615850e-47 |
Msa0233340 | Msa1203000 | 0.854034 | 1.610273e-61 | -8.615850e-47 |
Msa0236440 | Msa1203000 | 0.804459 | 2.138556e-49 | -8.615850e-47 |
Msa0374850 | Msa1203000 | 0.894836 | 1.695177e-75 | -8.615850e-47 |
Msa0375090 | Msa1203000 | 0.888889 | 3.952830e-73 | -8.615850e-47 |
Msa0385670 | Msa1203000 | 0.834729 | 2.532942e-56 | -8.615850e-47 |
Msa0419820 | Msa1203000 | 0.821235 | 4.497608e-53 | -8.615850e-47 |
Msa0423360 | Msa1203000 | -0.800557 | 1.362939e-48 | -8.615850e-47 |
Msa0435670 | Msa1203000 | 0.815802 | 7.670096e-52 | -8.615850e-47 |
Msa0470340 | Msa1203000 | 0.879196 | 1.518037e-69 | -8.615850e-47 |
Msa0470860 | Msa1203000 | 0.856363 | 3.385276e-62 | -8.615850e-47 |
Msa0479680 | Msa1203000 | 0.824628 | 7.281086e-54 | -8.615850e-47 |
Msa0479700 | Msa1203000 | 0.817106 | 3.916275e-52 | -8.615850e-47 |
Msa0480950 | Msa1203000 | 0.885398 | 8.413064e-72 | -8.615850e-47 |
Msa0481110 | Msa1203000 | 0.836635 | 8.337138e-57 | -8.615850e-47 |
Msa0981010 | Msa1203000 | 0.818662 | 1.743757e-52 | -8.615850e-47 |
Msa1002620 | Msa1203000 | 0.886617 | 2.925320e-72 | -8.615850e-47 |
Msa1007610 | Msa1203000 | -0.800547 | 1.369561e-48 | -8.615850e-47 |
Msa1010110 | Msa1203000 | 0.809314 | 2.011944e-50 | -8.615850e-47 |
Msa1033560 | Msa1203000 | 0.844055 | 9.582621e-59 | -8.615850e-47 |
Msa1073340 | Msa1203000 | 0.812073 | 5.093556e-51 | -8.615850e-47 |
Msa1073350 | Msa1203000 | 0.803767 | 2.978411e-49 | -8.615850e-47 |
Msa0251240 | Msa1203000 | 0.837524 | 4.939966e-57 | -8.615850e-47 |
Msa0266450 | Msa1203000 | 0.824545 | 7.616366e-54 | -8.615850e-47 |
Msa0288190 | Msa1203000 | 0.801582 | 8.411994e-49 | -8.615850e-47 |
Msa0311690 | Msa1203000 | 0.844864 | 5.805036e-59 | -8.615850e-47 |
Msa0315250 | Msa1203000 | 0.838328 | 3.070335e-57 | -8.615850e-47 |
Msa0326540 | Msa1203000 | 0.807974 | 3.888670e-50 | -8.615850e-47 |
Msa0334500 | Msa1203000 | 0.824356 | 8.437086e-54 | -8.615850e-47 |
Msa1113850 | Msa1203000 | 0.852305 | 5.036955e-61 | -8.615850e-47 |
Msa1160400 | Msa1203000 | 0.844548 | 7.061696e-59 | -8.615850e-47 |
Msa1171360 | Msa1203000 | 0.806315 | 8.731833e-50 | -8.615850e-47 |
Msa1172670 | Msa1203000 | 0.807693 | 4.461777e-50 | -8.615850e-47 |
Msa1179460 | Msa1203000 | 0.812931 | 3.307725e-51 | -8.615850e-47 |
Msa1190120 | Msa1203000 | 0.866424 | 2.880010e-65 | -8.615850e-47 |
Msa1197590 | Msa1203000 | 0.824161 | 9.378600e-54 | -8.615850e-47 |
Msa1203000 | Msa1205960 | 0.804017 | 2.642817e-49 | -8.615850e-47 |
Msa1203000 | Msa1211550 | 0.856616 | 2.851831e-62 | -8.615850e-47 |
Msa1203000 | Msa1217940 | 0.840335 | 9.250275e-58 | -8.615850e-47 |
Msa1203000 | Msa1218480 | 0.819477 | 1.137665e-52 | -8.615850e-47 |
Msa1203000 | Msa1219260 | 0.890157 | 1.269915e-73 | -8.615850e-47 |
Msa1203000 | Msa1227950 | 0.856828 | 2.470453e-62 | -8.615850e-47 |
Msa1203000 | Msa1227970 | 0.861724 | 8.392012e-64 | -8.615850e-47 |
Msa1203000 | Msa1228210 | 0.800147 | 1.652035e-48 | -8.615850e-47 |
Msa1203000 | Msa1254700 | 0.844810 | 6.002208e-59 | -8.615850e-47 |
Msa1203000 | Msa1255040 | -0.811420 | 7.064254e-51 | -8.615850e-47 |
Msa1203000 | Msa1255280 | 0.968928 | 2.221885e-129 | -8.615850e-47 |
Msa1203000 | Msa1258050 | 0.875109 | 3.992019e-68 | -8.615850e-47 |
Msa1203000 | Msa1266960 | 0.892982 | 9.604228e-75 | -8.615850e-47 |
Msa1203000 | Msa1291870 | 0.810704 | 1.009918e-50 | -8.615850e-47 |
Msa1203000 | Msa1308130 | 0.835316 | 1.801721e-56 | -8.615850e-47 |
Msa1203000 | Msa1331910 | 0.800431 | 1.446282e-48 | -8.615850e-47 |
Msa1203000 | Msa1339940 | 0.848920 | 4.505579e-60 | -8.615850e-47 |
Msa1203000 | Msa1342430 | 0.810579 | 1.074687e-50 | -8.615850e-47 |
Msa1203000 | Msa1369700 | 0.832425 | 9.522529e-56 | -8.615850e-47 |
Msa1203000 | Msa1395870 | 0.867518 | 1.290465e-65 | -8.615850e-47 |
Msa1203000 | Msa1397250 | 0.822492 | 2.300866e-53 | -8.615850e-47 |
Msa1203000 | Msa1399560 | 0.892250 | 1.888114e-74 | -8.615850e-47 |
Msa1203000 | Msa1401150 | 0.829756 | 4.308608e-55 | -8.615850e-47 |
Msa1203000 | Msa1437190 | 0.839814 | 1.265114e-57 | -8.615850e-47 |
Msa1203000 | Msa1440340 | 0.812952 | 3.271763e-51 | -8.615850e-47 |
Msa1203000 | Msa1443840 | 0.965151 | 3.108488e-124 | -8.615850e-47 |
Msa1203000 | Msa1449730 | 0.819458 | 1.149313e-52 | -8.615850e-47 |
Msa1203000 | Msa1452060 | 0.847047 | 1.480423e-59 | -8.615850e-47 |
Msa1203000 | Msa1460380 | 0.850055 | 2.174968e-60 | -8.615850e-47 |
Msa1203000 | Msa1460890 | 0.805426 | 1.342812e-49 | -8.615850e-47 |
Msa0503580 | Msa1203000 | 0.812707 | 3.701732e-51 | -8.615850e-47 |
Msa0531430 | Msa1203000 | 0.895408 | 9.860146e-76 | -8.615850e-47 |
Msa0534570 | Msa1203000 | 0.840032 | 1.110027e-57 | -8.615850e-47 |
Msa0534590 | Msa1203000 | 0.900228 | 9.039854e-78 | -8.615850e-47 |
Msa0548620 | Msa1203000 | 0.827866 | 1.234466e-54 | -8.615850e-47 |
Msa0565600 | Msa1203000 | 0.826658 | 2.404179e-54 | -8.615850e-47 |
Msa0590800 | Msa1203000 | 0.866995 | 1.895355e-65 | -8.615850e-47 |
Msa0853320 | Msa1203000 | 0.882007 | 1.494691e-70 | -8.615850e-47 |
Msa0862100 | Msa1203000 | 0.812674 | 3.765014e-51 | -8.615850e-47 |
Msa0880140 | Msa1203000 | 0.810501 | 1.117243e-50 | -8.615850e-47 |
Msa0880710 | Msa1203000 | 0.812744 | 3.633629e-51 | -8.615850e-47 |
Msa0966420 | Msa1203000 | 0.805537 | 1.272308e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1203000 | MtrunA17_Chr8g0373471 | 98.097 | 473 | 9 | 0 | 1 | 473 | 1 | 473 | 0.0 | 945 |
Msa1203000 | MtrunA17_Chr5g0403901 | 73.319 | 461 | 103 | 4 | 19 | 467 | 18 | 470 | 0.0 | 592 |
Msa1203000 | MtrunA17_Chr3g0139541 | 64.871 | 427 | 133 | 5 | 49 | 468 | 53 | 469 | 0.0 | 518 |
Msa1203000 | MtrunA17_Chr8g0380211 | 62.560 | 414 | 150 | 3 | 62 | 470 | 67 | 480 | 4.49e-157 | 454 |
Msa1203000 | MtrunA17_Chr1g0157751 | 50.547 | 457 | 210 | 5 | 20 | 466 | 6 | 456 | 3.43e-144 | 420 |
Msa1203000 | MtrunA17_Chr7g0265481 | 51.816 | 413 | 185 | 3 | 63 | 465 | 51 | 459 | 8.19e-126 | 374 |
Msa1203000 | MtrunA17_Chr8g0380191 | 57.637 | 347 | 106 | 3 | 122 | 467 | 10 | 316 | 6.60e-125 | 366 |
Msa1203000 | MtrunA17_Chr1g0179621 | 47.484 | 457 | 229 | 4 | 17 | 465 | 9 | 462 | 2.18e-120 | 360 |
Msa1203000 | MtrunA17_Chr2g0280401 | 28.982 | 383 | 252 | 7 | 100 | 465 | 87 | 466 | 1.99e-42 | 156 |
Msa1203000 | MtrunA17_Chr3g0139621 | 48.305 | 118 | 38 | 2 | 301 | 395 | 27 | 144 | 1.14e-17 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1203000 | AT2G25737.1 | 59.915 | 469 | 167 | 6 | 15 | 468 | 13 | 475 | 2.14e-179 | 511 |
Msa1203000 | AT2G25737.2 | 56.712 | 365 | 137 | 6 | 15 | 364 | 13 | 371 | 1.32e-122 | 362 |
Msa1203000 | AT2G36630.1 | 47.962 | 417 | 207 | 3 | 57 | 465 | 42 | 456 | 1.66e-118 | 355 |
Msa1203000 | AT1G11540.2 | 32.029 | 409 | 245 | 7 | 76 | 465 | 56 | 450 | 1.85e-46 | 167 |
Msa1203000 | AT1G11540.1 | 31.496 | 381 | 228 | 7 | 104 | 465 | 1 | 367 | 1.12e-45 | 163 |
Msa1203000 | AT1G61740.1 | 29.158 | 463 | 292 | 8 | 24 | 465 | 11 | 458 | 1.18e-44 | 162 |
Msa1203000 | AT4G21250.1 | 31.690 | 426 | 236 | 9 | 68 | 465 | 51 | 449 | 5.86e-39 | 147 |
Msa1203000 | AT4G21260.1 | 27.500 | 400 | 227 | 10 | 68 | 465 | 55 | 393 | 6.48e-29 | 118 |
Find 115 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGGAGGTGGCTTCATTT+TGG | 0.204042 | 8_1:-56745191 | Msa1203000:CDS |
TTCAAAATGCTGGTTATTCT+AGG | 0.226848 | 8_1:+56748479 | None:intergenic |
GATGGAAAATGAAGAATATA+TGG | 0.247767 | 8_1:-56744351 | Msa1203000:CDS |
TATCAGTTCTTATGTATGTT+TGG | 0.264788 | 8_1:-56746212 | Msa1203000:CDS |
AAAGGAAACAATTATGAAAA+AGG | 0.272024 | 8_1:-56746745 | Msa1203000:intron |
ATCAGTTCTTATGTATGTTT+GGG | 0.291680 | 8_1:-56746211 | Msa1203000:CDS |
CCTATGCTTACTTTGATCAT+TGG | 0.307184 | 8_1:-56747953 | Msa1203000:CDS |
TTGAAATGGGGTTTGGAAAC+AGG | 0.308611 | 8_1:-56748578 | None:intergenic |
ATATATTGCACTTCAAACTA+TGG | 0.315520 | 8_1:+56744051 | None:intergenic |
GCTATTGCAGGCATGATTAC+AGG | 0.318014 | 8_1:-56747663 | Msa1203000:intron |
AGAAAGATAATTGCTATCTT+TGG | 0.319840 | 8_1:-56744620 | Msa1203000:CDS |
AGGCATCGATACATGGAAAA+AGG | 0.325374 | 8_1:-56746763 | Msa1203000:CDS |
GCCTTTGACTAAAGCTTTAG+TGG | 0.329119 | 8_1:+56746782 | None:intergenic |
TAAACGGTATGTTACATAAT+TGG | 0.337245 | 8_1:+56744077 | None:intergenic |
TTGGCTTCTTAATTCCTTGC+AGG | 0.341432 | 8_1:-56746033 | Msa1203000:intron |
TAGAACCTGATTCCAACATT+TGG | 0.359466 | 8_1:+56746612 | None:intergenic |
GAGAAGCATCAACAATTATA+TGG | 0.361224 | 8_1:-56748344 | Msa1203000:CDS |
ATTAAGAAGCCAATACTCTA+TGG | 0.361665 | 8_1:+56746043 | None:intergenic |
AGTTCCTTTGCATAAGCATA+TGG | 0.364228 | 8_1:+56745318 | None:intergenic |
TTCGTCTTCCAAAACTCTTT+CGG | 0.369986 | 8_1:+56748278 | None:intergenic |
TCTCATTGTTCAAATTCTTA+AGG | 0.370958 | 8_1:-56746181 | Msa1203000:intron |
TAGTTTAGCCGAAAGAGTTT+TGG | 0.383679 | 8_1:-56748286 | Msa1203000:CDS |
TGTTTCTTACCATAGGGTAC+TGG | 0.386212 | 8_1:+56744804 | None:intergenic |
ATCACAGGTGGGGTGGGAAT+AGG | 0.390427 | 8_1:-56744389 | Msa1203000:intron |
AGAACCTGATTCCAACATTT+GGG | 0.395873 | 8_1:+56746613 | None:intergenic |
GTTGAGCAGGAAATGAAGTT+TGG | 0.401432 | 8_1:-56748064 | Msa1203000:intron |
TGAACGGTTTGAAACAATAT+AGG | 0.402736 | 8_1:+56748404 | None:intergenic |
GTTAGTGGTTTGCTTGGTCT+AGG | 0.405722 | 8_1:-56745208 | Msa1203000:CDS |
AGAAGTTTCTTCTGGTATAG+TGG | 0.415578 | 8_1:-56748228 | Msa1203000:CDS |
TTTGTGAGCGCAATCAGTTT+AGG | 0.416463 | 8_1:-56744557 | Msa1203000:intron |
GAGAGGGCTGTAGAAGACTT+TGG | 0.417036 | 8_1:+56747923 | None:intergenic |
TTAATGTCATATTTGCTGAT+TGG | 0.419755 | 8_1:-56747509 | Msa1203000:CDS |
TTGGGAAGTGTAGGAGGAGT+AGG | 0.421290 | 8_1:-56747995 | Msa1203000:CDS |
GAACTTTCAGGAAGCCTTTG+AGG | 0.428813 | 8_1:-56746642 | Msa1203000:intron |
AGTGTAACAGAAATTGCAAT+AGG | 0.433950 | 8_1:+56745349 | None:intergenic |
AAACTTGTTCCATAGAGTAT+TGG | 0.436863 | 8_1:-56746052 | Msa1203000:CDS |
AGTCTTCCTATGAACGTGTT+TGG | 0.439230 | 8_1:-56748203 | Msa1203000:CDS |
ATAATAGCTGGTATGGTTAG+TGG | 0.442928 | 8_1:-56745223 | Msa1203000:CDS |
AGGCAACATGGTTGAGAAGA+TGG | 0.444124 | 8_1:-56744369 | Msa1203000:CDS |
CTTCAAACTATGGTCATAAA+CGG | 0.445809 | 8_1:+56744061 | None:intergenic |
GTAGGAGGAGTAGGAGGTGG+AGG | 0.451115 | 8_1:-56747986 | Msa1203000:CDS |
ATGGAAAATGAAGAATATAT+GGG | 0.453528 | 8_1:-56744350 | Msa1203000:CDS |
CTTTACTTGACAACATTCAC+TGG | 0.454961 | 8_1:-56746242 | Msa1203000:CDS |
GCAGCCCAAATGTTGGAATC+AGG | 0.455292 | 8_1:-56746617 | Msa1203000:CDS |
AGCAGGAAATGAAGTTTGGT+TGG | 0.456534 | 8_1:-56748060 | Msa1203000:intron |
GCAACCATAGCTGCATTAAC+CGG | 0.462747 | 8_1:-56744656 | Msa1203000:CDS |
CACAGGCCAAACACGTTCAT+AGG | 0.464015 | 8_1:+56748197 | None:intergenic |
CAGTGAATGTTGTCAAGTAA+AGG | 0.464845 | 8_1:+56746243 | None:intergenic |
GGTTTGCTTGGTCTAGGAGG+TGG | 0.469170 | 8_1:-56745202 | Msa1203000:CDS |
ATTGTCGTAGGTTCTATTGT+TGG | 0.473965 | 8_1:-56748034 | Msa1203000:CDS |
TTCCTAGCATTAGCATAGGC+TGG | 0.478501 | 8_1:+56747550 | None:intergenic |
AGTGAATGTTGTCAAGTAAA+GGG | 0.481684 | 8_1:+56746244 | None:intergenic |
GGCATGATTACAGGAGCCGC+TGG | 0.482016 | 8_1:-56747654 | Msa1203000:CDS |
GGAATTGGGAATTCCTCCTC+AGG | 0.483527 | 8_1:-56745155 | Msa1203000:intron |
CTGTGGAATAATAGCTGGTA+TGG | 0.485082 | 8_1:-56745230 | Msa1203000:CDS |
AACTAGAGTAATTGCATCAA+GGG | 0.487063 | 8_1:-56745299 | Msa1203000:CDS |
TGTTTCAAACCGTTCATACA+TGG | 0.488172 | 8_1:-56748397 | Msa1203000:exon |
AGTGTAGGAGGAGTAGGAGG+TGG | 0.490550 | 8_1:-56747989 | Msa1203000:CDS |
TGCTTCTGTGGAATAATAGC+TGG | 0.491856 | 8_1:-56745235 | Msa1203000:CDS |
TTGGCTATCACAGGTGGGGT+GGG | 0.492087 | 8_1:-56744395 | Msa1203000:intron |
TTTGGCTATCACAGGTGGGG+TGG | 0.493274 | 8_1:-56744396 | Msa1203000:intron |
TCTTCATCTTGTAGATCAGC+TGG | 0.493935 | 8_1:+56746365 | None:intergenic |
CTTTCTCACCACATGTTGGC+CGG | 0.494055 | 8_1:+56744637 | None:intergenic |
GGTATGGTTAGTGGTTTGCT+TGG | 0.496243 | 8_1:-56745214 | Msa1203000:CDS |
GGAAGTGTAGGAGGAGTAGG+AGG | 0.499007 | 8_1:-56747992 | Msa1203000:CDS |
AGTTCTTATGTATGTTTGGG+TGG | 0.502161 | 8_1:-56746208 | Msa1203000:CDS |
TTGCTTATCATTCTGTTCAT+CGG | 0.504723 | 8_1:-56747474 | Msa1203000:intron |
GCAAGATCATAATCTATAAG+TGG | 0.507543 | 8_1:+56747582 | None:intergenic |
GCAGATTGTGTAACAATGAC+TGG | 0.507617 | 8_1:-56744188 | Msa1203000:three_prime_UTR |
GAACTAGAGTAATTGCATCA+AGG | 0.511872 | 8_1:-56745300 | Msa1203000:CDS |
ATCTGTCTTTACTGCTTCTG+TGG | 0.513821 | 8_1:-56745247 | Msa1203000:CDS |
CATTTGGGCTGCTTCCTCAA+AGG | 0.514918 | 8_1:+56746628 | None:intergenic |
GGAGCAGCATTGGGAAGTGT+AGG | 0.522662 | 8_1:-56748004 | Msa1203000:CDS |
CAAGGGGAAAGGAAATCACT+TGG | 0.523181 | 8_1:-56745282 | Msa1203000:CDS |
ATAAGTGGCATGTCTAGTGT+AGG | 0.528419 | 8_1:+56747597 | None:intergenic |
GTTTCTTACCATAGGGTACT+GGG | 0.530425 | 8_1:+56744805 | None:intergenic |
TAGTCAAAGGCATCGATACA+TGG | 0.531192 | 8_1:-56746770 | Msa1203000:CDS |
GATCGCTTCCCAGTACCCTA+TGG | 0.534547 | 8_1:-56744813 | Msa1203000:intron |
CCAATGATCAAAGTAAGCAT+AGG | 0.543311 | 8_1:+56747953 | None:intergenic |
GCAGCATTGGGAAGTGTAGG+AGG | 0.544657 | 8_1:-56748001 | Msa1203000:CDS |
TTTCTCTTCCTCCATGTCAG+TGG | 0.546653 | 8_1:-56744853 | Msa1203000:CDS |
CTTCAAAAGCCATGTATGAA+CGG | 0.550042 | 8_1:+56748388 | None:intergenic |
CATTGTACATGAGAATGAGT+AGG | 0.553335 | 8_1:+56744022 | None:intergenic |
CAATTATATGGCTAGTCTCG+TGG | 0.555789 | 8_1:-56748332 | Msa1203000:CDS |
CAATGATCAAAGTAAGCATA+GGG | 0.558927 | 8_1:+56747954 | None:intergenic |
AATATGTAGAAAATTTAGAA+AGG | 0.559766 | 8_1:+56744223 | None:intergenic |
AGTGGTTTGCTTGGTCTAGG+AGG | 0.560215 | 8_1:-56745205 | Msa1203000:CDS |
AGCTGATCTACAAGATGAAG+AGG | 0.560678 | 8_1:-56746363 | Msa1203000:intron |
TGTCATATTTGCTGATTGGA+TGG | 0.563702 | 8_1:-56747505 | Msa1203000:CDS |
TCCACTAAAGCTTTAGTCAA+AGG | 0.565804 | 8_1:-56746783 | Msa1203000:CDS |
ATATATAATATTTACCTGCA+AGG | 0.570892 | 8_1:+56746019 | None:intergenic |
CTAATTCCTAGCATTAGCAT+AGG | 0.571256 | 8_1:+56747546 | None:intergenic |
TGAGGAAGCAGCCCAAATGT+TGG | 0.572269 | 8_1:-56746624 | Msa1203000:CDS |
ACTTGACAACATTCACTGGA+AGG | 0.572833 | 8_1:-56746238 | Msa1203000:CDS |
AGTAATTGCATCAAGGGGAA+AGG | 0.574209 | 8_1:-56745293 | Msa1203000:CDS |
TGCATTAACCGGCCAACATG+TGG | 0.574265 | 8_1:-56744645 | Msa1203000:CDS |
TAAGTGGCATGTCTAGTGTA+GGG | 0.577620 | 8_1:+56747598 | None:intergenic |
GAAGCCATATGCTTATGCAA+AGG | 0.580245 | 8_1:-56745322 | Msa1203000:CDS |
TTGGCCGGTTAATGCAGCTA+TGG | 0.591965 | 8_1:+56744652 | None:intergenic |
CAACAGTGTATTACAATCTG+AGG | 0.597031 | 8_1:-56747629 | Msa1203000:CDS |
TTTGGTTGGAGAATTGTCGT+AGG | 0.615183 | 8_1:-56748046 | Msa1203000:CDS |
TGGAAAATGAAGAATATATG+GGG | 0.615202 | 8_1:-56744349 | Msa1203000:CDS |
AATATACTAACACTTAGAGA+GGG | 0.620159 | 8_1:+56747907 | None:intergenic |
TTATCTTTCTCACCACATGT+TGG | 0.621904 | 8_1:+56744633 | None:intergenic |
GAATGAGTTTGTACCTGAGG+AGG | 0.622331 | 8_1:+56745142 | None:intergenic |
AAATATACTAACACTTAGAG+AGG | 0.625688 | 8_1:+56747906 | None:intergenic |
GCATGATTACAGGAGCCGCT+GGG | 0.626454 | 8_1:-56747653 | Msa1203000:CDS |
ATAATATTGTACCACTGACA+TGG | 0.629151 | 8_1:+56744842 | None:intergenic |
TTCCAGCCTATGCTAATGCT+AGG | 0.630800 | 8_1:-56747552 | Msa1203000:CDS |
CTAATGCTAGGAATTAGCAT+TGG | 0.634658 | 8_1:-56747540 | Msa1203000:CDS |
ACTAGAGTAATTGCATCAAG+GGG | 0.654446 | 8_1:-56745298 | Msa1203000:CDS |
TTTGACAATCTCTGCCACCA+TGG | 0.655124 | 8_1:-56744326 | Msa1203000:CDS |
TGGGGTGGGAATAGGCAACA+TGG | 0.656926 | 8_1:-56744381 | Msa1203000:CDS |
GTAATACACTGTTGACCCAG+CGG | 0.676926 | 8_1:+56747638 | None:intergenic |
ATATTGTACCACTGACATGG+AGG | 0.737557 | 8_1:+56744845 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTGTTTTTTTTGTTTTT+TGG | + | chr8_1:56744150-56744169 | None:intergenic | 10.0% |
!!! | ATAGATTCATATATATATTT+TGG | - | chr8_1:56745225-56745244 | Msa1203000:CDS | 10.0% |
!! | AGGTAAATATTATATATATT+TGG | - | chr8_1:56746576-56746595 | Msa1203000:intron | 10.0% |
!!! | TAAATCCTTAAAAAATTTTA+TGG | - | chr8_1:56747118-56747137 | Msa1203000:intron | 10.0% |
!!! | AAAAACCATAAAATTTTTTA+AGG | + | chr8_1:56747126-56747145 | None:intergenic | 10.0% |
!! | ATAGTTCTTAATTTAACATT+TGG | - | chr8_1:56746108-56746127 | Msa1203000:intron | 15.0% |
!!! | TAATTTATAACTTGCTTTTT+TGG | - | chr8_1:56746983-56747002 | Msa1203000:intron | 15.0% |
!! | TATCTTAAAAAAAACTGAAA+GGG | + | chr8_1:56747653-56747672 | None:intergenic | 15.0% |
!! | ATATCTTAAAAAAAACTGAA+AGG | + | chr8_1:56747654-56747673 | None:intergenic | 15.0% |
!! | TTAAACTTTCTATCATAAAT+GGG | + | chr8_1:56748115-56748134 | None:intergenic | 15.0% |
!!! | TAAATTTTATCCTTACTTTA+TGG | + | chr8_1:56748138-56748157 | None:intergenic | 15.0% |
!!! | AGTAAGGATAAAATTTATTT+TGG | - | chr8_1:56748141-56748160 | Msa1203000:intron | 15.0% |
!! | AATATGTAGAAAATTTAGAA+AGG | + | chr8_1:56748369-56748388 | None:intergenic | 15.0% |
!!! | ACATAAAAACAATTTTAAGA+TGG | + | chr8_1:56748440-56748459 | None:intergenic | 15.0% |
!!! | GATACTTTATGTTATGTTTT+TGG | - | chr8_1:56744432-56744451 | Msa1203000:intron | 20.0% |
!! | TCATGTCAATATTATAAATG+AGG | + | chr8_1:56744468-56744487 | None:intergenic | 20.0% |
!! | TTATATATATAGTCGATGTT+TGG | - | chr8_1:56744730-56744749 | Msa1203000:intron | 20.0% |
!!! | TATGTATTGGTATGTTTATT+TGG | + | chr8_1:56744883-56744902 | None:intergenic | 20.0% |
!!! | TTATTGTATTTTTTCCGAAT+TGG | - | chr8_1:56745325-56745344 | Msa1203000:CDS | 20.0% |
!!! | TATTGTATTTTTTCCGAATT+GGG | - | chr8_1:56745326-56745345 | Msa1203000:CDS | 20.0% |
!! | GTTCTTGAAAAAATTGAATT+TGG | + | chr8_1:56745749-56745768 | None:intergenic | 20.0% |
!! | AAAGGAAACAATTATGAAAA+AGG | - | chr8_1:56745844-56745863 | Msa1203000:intron | 20.0% |
!! | TTAATTAACACAAATAAGAG+AGG | - | chr8_1:56746084-56746103 | Msa1203000:intron | 20.0% |
!! | TTCTTAAGGTAGTTAATATT+TGG | - | chr8_1:56746422-56746441 | Msa1203000:intron | 20.0% |
!! | ATATATAATATTTACCTGCA+AGG | + | chr8_1:56746573-56746592 | None:intergenic | 20.0% |
!!! | ATACTACTATATCACAATTT+TGG | + | chr8_1:56746688-56746707 | None:intergenic | 20.0% |
!! | TGATATAGTAGTATACATAA+AGG | - | chr8_1:56746694-56746713 | Msa1203000:intron | 20.0% |
!!! | AATTAATTGTGATTTGTTGA+CGG | + | chr8_1:56746792-56746811 | None:intergenic | 20.0% |
!! | TTAATAAGAGAAATGTTAAC+CGG | - | chr8_1:56746850-56746869 | Msa1203000:intron | 20.0% |
!!! | CCTTTTTTAGTATTCTTAAT+CGG | + | chr8_1:56746888-56746907 | None:intergenic | 20.0% |
!! | ACTAAAATACATATCTTGAT+TGG | - | chr8_1:56747148-56747167 | Msa1203000:intron | 20.0% |
!!! | TTGATGAATATTTTTGAATG+TGG | - | chr8_1:56747678-56747697 | Msa1203000:intron | 20.0% |
!!! | ATATATTGTTTCTTACCATA+GGG | + | chr8_1:56747794-56747813 | None:intergenic | 20.0% |
!!! | TATATATTGTTTCTTACCAT+AGG | + | chr8_1:56747795-56747814 | None:intergenic | 20.0% |
!! | GTTAAACTTTCTATCATAAA+TGG | + | chr8_1:56748116-56748135 | None:intergenic | 20.0% |
!! | ATGGAAAATGAAGAATATAT+GGG | - | chr8_1:56748239-56748258 | Msa1203000:CDS | 20.0% |
!!! | TGTTTTTATGTGTTTTTGTT+TGG | - | chr8_1:56748449-56748468 | Msa1203000:five_prime_UTR | 20.0% |
!! | TTTTTCATGACAACAATTTC+TGG | + | chr8_1:56744340-56744359 | None:intergenic | 25.0% |
! | TGAAAAAAAGAAGTTTCTTC+TGG | - | chr8_1:56744353-56744372 | Msa1203000:CDS | 25.0% |
! | AAAATGTTTGATAAACTCAC+AGG | + | chr8_1:56744412-56744431 | None:intergenic | 25.0% |
! | TTGACATGATGTTATGAAAT+TGG | - | chr8_1:56744479-56744498 | Msa1203000:intron | 25.0% |
! | AATATACTAACACTTAGAGA+GGG | + | chr8_1:56744685-56744704 | None:intergenic | 25.0% |
! | AAATATACTAACACTTAGAG+AGG | + | chr8_1:56744686-56744705 | None:intergenic | 25.0% |
! | CAGAAAGAATACATATGTAT+TGG | + | chr8_1:56744896-56744915 | None:intergenic | 25.0% |
!! | TTAATGTCATATTTGCTGAT+TGG | - | chr8_1:56745080-56745099 | Msa1203000:intron | 25.0% |
! | AATAACCAAATGCAATATGT+TGG | + | chr8_1:56745310-56745329 | None:intergenic | 25.0% |
! | TTCTTATTGGTCAAAAACAA+TGG | + | chr8_1:56745558-56745577 | None:intergenic | 25.0% |
!!! | TTGTTTTTCTCACTTCTTAT+TGG | + | chr8_1:56745571-56745590 | None:intergenic | 25.0% |
! | AATAAGAAGTGAGAAAAACA+AGG | - | chr8_1:56745570-56745589 | Msa1203000:intron | 25.0% |
! | TACTCTTACTATAAAGTAGA+AGG | + | chr8_1:56745917-56745936 | None:intergenic | 25.0% |
! | TATCAGTTCTTATGTATGTT+TGG | - | chr8_1:56746377-56746396 | Msa1203000:CDS | 25.0% |
! | ATCAGTTCTTATGTATGTTT+GGG | - | chr8_1:56746378-56746397 | Msa1203000:CDS | 25.0% |
! | TCTCATTGTTCAAATTCTTA+AGG | - | chr8_1:56746408-56746427 | Msa1203000:intron | 25.0% |
! | AGTTGTATAACTTCATAGAT+TGG | - | chr8_1:56746637-56746656 | Msa1203000:intron | 25.0% |
! | TAATACAAATGTTCCTATGT+AGG | + | chr8_1:56746725-56746744 | None:intergenic | 25.0% |
!!! | GGTGTAAATTTTTTTACATC+AGG | + | chr8_1:56746771-56746790 | None:intergenic | 25.0% |
! | CCGATTAAGAATACTAAAAA+AGG | - | chr8_1:56746885-56746904 | Msa1203000:intron | 25.0% |
!!! | CATAAAACTATTTCTATGCA+AGG | - | chr8_1:56747177-56747196 | Msa1203000:intron | 25.0% |
!!! | GTGTGCTATTTATCAATTTA+AGG | - | chr8_1:56747215-56747234 | Msa1203000:intron | 25.0% |
! | CTCAATCGAATATATTAATG+AGG | - | chr8_1:56747518-56747537 | Msa1203000:CDS | 25.0% |
!!! | ATTATTTTACAACTGTTTCG+AGG | + | chr8_1:56747601-56747620 | None:intergenic | 25.0% |
!!! | TGAATATTTTTGAATGTGGT+AGG | - | chr8_1:56747682-56747701 | Msa1203000:intron | 25.0% |
! | GAATGTAGATATGATGATAT+TGG | - | chr8_1:56747818-56747837 | Msa1203000:intron | 25.0% |
! | AGAAAGATAATTGCTATCTT+TGG | - | chr8_1:56747969-56747988 | Msa1203000:CDS | 25.0% |
! | GAAAGTTTAACCATAAAGTA+AGG | - | chr8_1:56748125-56748144 | Msa1203000:intron | 25.0% |
!! | TAGTAACAATGTCTCATTTT+TGG | - | chr8_1:56748175-56748194 | Msa1203000:intron | 25.0% |
! | GATGGAAAATGAAGAATATA+TGG | - | chr8_1:56748238-56748257 | Msa1203000:CDS | 25.0% |
! | TGGAAAATGAAGAATATATG+GGG | - | chr8_1:56748240-56748259 | Msa1203000:CDS | 25.0% |
! | TAAACGGTATGTTACATAAT+TGG | + | chr8_1:56748515-56748534 | None:intergenic | 25.0% |
! | ATATATTGCACTTCAAACTA+TGG | + | chr8_1:56748541-56748560 | None:intergenic | 25.0% |
! | TTCAAAATGCTGGTTATTCT+AGG | + | chr8_1:56744113-56744132 | None:intergenic | 30.0% |
!!! | CTACTACTTTTTCAAAATGC+TGG | + | chr8_1:56744123-56744142 | None:intergenic | 30.0% |
! | TGAACGGTTTGAAACAATAT+AGG | + | chr8_1:56744188-56744207 | None:intergenic | 30.0% |
!! | GAGAAGCATCAACAATTATA+TGG | - | chr8_1:56744245-56744264 | Msa1203000:three_prime_UTR | 30.0% |
!!! | GGTTCTATTGTTGGATTTTT+TGG | - | chr8_1:56744564-56744583 | Msa1203000:CDS | 30.0% |
CAATGATCAAAGTAAGCATA+GGG | + | chr8_1:56744638-56744657 | None:intergenic | 30.0% | |
! | TGATTTCTTATTGCTATTGC+AGG | - | chr8_1:56744914-56744933 | Msa1203000:intron | 30.0% |
GCAAGATCATAATCTATAAG+TGG | + | chr8_1:56745010-56745029 | None:intergenic | 30.0% | |
TTGCTTATCATTCTGTTCAT+CGG | - | chr8_1:56745115-56745134 | Msa1203000:intron | 30.0% | |
TGTTTAGCATAATTGCTCTT+GGG | - | chr8_1:56745152-56745171 | Msa1203000:intron | 30.0% | |
!!! | CTCTTCTGTTTGTGTTTTTT+GGG | - | chr8_1:56745181-56745200 | Msa1203000:CDS | 30.0% |
!!! | AACCACTTTTTGACAACTTT+TGG | - | chr8_1:56745473-56745492 | Msa1203000:intron | 30.0% |
AAAACAATGGAGAGAGAAAA+AGG | + | chr8_1:56745545-56745564 | None:intergenic | 30.0% | |
TCAACAAAGTTGTCATCAAA+TGG | - | chr8_1:56745596-56745615 | Msa1203000:intron | 30.0% | |
AAATCTAGACAGTTTGATGT+CGG | - | chr8_1:56745665-56745684 | Msa1203000:intron | 30.0% | |
TGTAATAACTGGAAGTTTGT+AGG | + | chr8_1:56746019-56746038 | None:intergenic | 30.0% | |
TTCCAGTTATTACATGTAGA+TGG | - | chr8_1:56746025-56746044 | Msa1203000:intron | 30.0% | |
!! | TTCAGAAGCATCTGATATAA+GGG | + | chr8_1:56746186-56746205 | None:intergenic | 30.0% |
TGAAGAGGTAATTATTTCCA+AGG | - | chr8_1:56746241-56746260 | Msa1203000:CDS | 30.0% | |
GAAGAGGTAATTATTTCCAA+GGG | - | chr8_1:56746242-56746261 | Msa1203000:CDS | 30.0% | |
ACTCTCTATAAAGAATGATC+TGG | + | chr8_1:56746272-56746291 | None:intergenic | 30.0% | |
TCTTTATAGAGAGTTCATTG+AGG | - | chr8_1:56746278-56746297 | Msa1203000:intron | 30.0% | |
TATGTTAAATTCTTGTGTGC+AGG | - | chr8_1:56746321-56746340 | Msa1203000:intron | 30.0% | |
AGTGAATGTTGTCAAGTAAA+GGG | + | chr8_1:56746348-56746367 | None:intergenic | 30.0% | |
! | AAACTTGTTCCATAGAGTAT+TGG | - | chr8_1:56746537-56746556 | Msa1203000:intron | 30.0% |
ATTAAGAAGCCAATACTCTA+TGG | + | chr8_1:56746549-56746568 | None:intergenic | 30.0% | |
!! | CACAATTTTGGTCTTTTAAC+AGG | + | chr8_1:56746676-56746695 | None:intergenic | 30.0% |
CATAAAGGTTTATCCTACAT+AGG | - | chr8_1:56746709-56746728 | Msa1203000:intron | 30.0% | |
!! | TAAAAAAGTGTCATGCTAAC+CGG | + | chr8_1:56747034-56747053 | None:intergenic | 30.0% |
AGTGTAACAGAAATTGCAAT+AGG | + | chr8_1:56747243-56747262 | None:intergenic | 30.0% | |
AACTAGAGTAATTGCATCAA+GGG | - | chr8_1:56747290-56747309 | Msa1203000:intron | 30.0% | |
ATTCCCAATTCCAAAAACAA+TGG | + | chr8_1:56747426-56747445 | None:intergenic | 30.0% | |
CGAATATATTAATGAGGTCT+CGG | - | chr8_1:56747524-56747543 | Msa1203000:CDS | 30.0% | |
ATAATATTGTACCACTGACA+TGG | + | chr8_1:56747750-56747769 | None:intergenic | 30.0% | |
AACTTTCTATCATAAATGGG+TGG | + | chr8_1:56748112-56748131 | None:intergenic | 30.0% | |
!!! | AAACCCCAAATTTTTTTCCA+TGG | + | chr8_1:56748283-56748302 | None:intergenic | 30.0% |
CTTCAAACTATGGTCATAAA+CGG | + | chr8_1:56748531-56748550 | None:intergenic | 30.0% | |
TGTTTCAAACCGTTCATACA+TGG | - | chr8_1:56744192-56744211 | Msa1203000:three_prime_UTR | 35.0% | |
CTTCAAAAGCCATGTATGAA+CGG | + | chr8_1:56744204-56744223 | None:intergenic | 35.0% | |
!!! | GGCTTTTGAAGTTCAAAAGA+AGG | - | chr8_1:56744213-56744232 | Msa1203000:three_prime_UTR | 35.0% |
! | TAGTTTAGCCGAAAGAGTTT+TGG | - | chr8_1:56744303-56744322 | Msa1203000:exon | 35.0% |
TTCGTCTTCCAAAACTCTTT+CGG | + | chr8_1:56744314-56744333 | None:intergenic | 35.0% | |
AGAAGTTTCTTCTGGTATAG+TGG | - | chr8_1:56744361-56744380 | Msa1203000:CDS | 35.0% | |
!! | TTGGTGATGATGCATTGTAA+TGG | - | chr8_1:56744498-56744517 | Msa1203000:intron | 35.0% |
!!! | TTGTAATGGTTTTGTTGAGC+AGG | - | chr8_1:56744512-56744531 | Msa1203000:intron | 35.0% |
ATTGTCGTAGGTTCTATTGT+TGG | - | chr8_1:56744555-56744574 | Msa1203000:intron | 35.0% | |
CCAATGATCAAAGTAAGCAT+AGG | + | chr8_1:56744639-56744658 | None:intergenic | 35.0% | |
CCTATGCTTACTTTGATCAT+TGG | - | chr8_1:56744636-56744655 | Msa1203000:CDS | 35.0% | |
!!! | TACAGTTTTGGACCTGAAAT+TGG | - | chr8_1:56744787-56744806 | Msa1203000:intron | 35.0% |
TTTGTAGCTTCACCAATTTC+AGG | + | chr8_1:56744802-56744821 | None:intergenic | 35.0% | |
AAGCTACAAATAGTAGCATG+TGG | - | chr8_1:56744812-56744831 | Msa1203000:intron | 35.0% | |
TACAAATAGTAGCATGTGGT+TGG | - | chr8_1:56744816-56744835 | Msa1203000:CDS | 35.0% | |
CAACAGTGTATTACAATCTG+AGG | - | chr8_1:56744960-56744979 | Msa1203000:intron | 35.0% | |
CTAATTCCTAGCATTAGCAT+AGG | + | chr8_1:56745046-56745065 | None:intergenic | 35.0% | |
CTAATGCTAGGAATTAGCAT+TGG | - | chr8_1:56745049-56745068 | Msa1203000:intron | 35.0% | |
! | TGTCATATTTGCTGATTGGA+TGG | - | chr8_1:56745084-56745103 | Msa1203000:intron | 35.0% |
CTGTTTAGCATAATTGCTCT+TGG | - | chr8_1:56745151-56745170 | Msa1203000:intron | 35.0% | |
!!! | GCTCTTCTGTTTGTGTTTTT+TGG | - | chr8_1:56745180-56745199 | Msa1203000:CDS | 35.0% |
!!! | TTTTTTGGGAAAGAAGCACA+TGG | - | chr8_1:56745195-56745214 | Msa1203000:CDS | 35.0% |
! | TGTTGATTGTGTAAATGCGT+TGG | + | chr8_1:56745366-56745385 | None:intergenic | 35.0% |
GTCCAAAAGTTGTCAAAAAG+TGG | + | chr8_1:56745478-56745497 | None:intergenic | 35.0% | |
! | TCCACTAAAGCTTTAGTCAA+AGG | - | chr8_1:56745806-56745825 | Msa1203000:intron | 35.0% |
TACTATGCTACTGAACTTTC+AGG | - | chr8_1:56745935-56745954 | Msa1203000:intron | 35.0% | |
AGAACCTGATTCCAACATTT+GGG | + | chr8_1:56745979-56745998 | None:intergenic | 35.0% | |
TAGAACCTGATTCCAACATT+TGG | + | chr8_1:56745980-56745999 | None:intergenic | 35.0% | |
AGCCATCTACATGTAATAAC+TGG | + | chr8_1:56746030-56746049 | None:intergenic | 35.0% | |
!! | TCAGAAGCATCTGATATAAG+GGG | + | chr8_1:56746185-56746204 | None:intergenic | 35.0% |
!! | CTTCAGAAGCATCTGATATA+AGG | + | chr8_1:56746187-56746206 | None:intergenic | 35.0% |
CAGTGAATGTTGTCAAGTAA+AGG | + | chr8_1:56746349-56746368 | None:intergenic | 35.0% | |
CTTTACTTGACAACATTCAC+TGG | - | chr8_1:56746347-56746366 | Msa1203000:intron | 35.0% | |
AGTTCTTATGTATGTTTGGG+TGG | - | chr8_1:56746381-56746400 | Msa1203000:CDS | 35.0% | |
! | AGTATTCTTAATCGGTGTTC+CGG | + | chr8_1:56746880-56746899 | None:intergenic | 35.0% |
TGCAAGGTCTAACTGAAATT+TGG | - | chr8_1:56747193-56747212 | Msa1203000:intron | 35.0% | |
AGTTCCTTTGCATAAGCATA+TGG | + | chr8_1:56747274-56747293 | None:intergenic | 35.0% | |
GAACTAGAGTAATTGCATCA+AGG | - | chr8_1:56747289-56747308 | Msa1203000:intron | 35.0% | |
ACTAGAGTAATTGCATCAAG+GGG | - | chr8_1:56747291-56747310 | Msa1203000:intron | 35.0% | |
ATAATAGCTGGTATGGTTAG+TGG | - | chr8_1:56747366-56747385 | Msa1203000:intron | 35.0% | |
!!! | CATTTTGGGACCATTGTTTT+TGG | - | chr8_1:56747413-56747432 | Msa1203000:intron | 35.0% |
!!! | GGACCATTGTTTTTGGAATT+GGG | - | chr8_1:56747420-56747439 | Msa1203000:intron | 35.0% |
AATGAATGAGTTTGTACCTG+AGG | + | chr8_1:56747453-56747472 | None:intergenic | 35.0% | |
TTAATGAGGTCTCGGTTTAA+TGG | - | chr8_1:56747532-56747551 | Msa1203000:CDS | 35.0% | |
! | TGCTACATCAACTTTTGCTA+TGG | - | chr8_1:56747712-56747731 | Msa1203000:intron | 35.0% |
TTATCTTTCTCACCACATGT+TGG | + | chr8_1:56747959-56747978 | None:intergenic | 35.0% | |
TGCCACCATGGAAAAAAATT+TGG | - | chr8_1:56748275-56748294 | Msa1203000:CDS | 35.0% | |
GCCACCATGGAAAAAAATTT+GGG | - | chr8_1:56748276-56748295 | Msa1203000:CDS | 35.0% | |
CCACCATGGAAAAAAATTTG+GGG | - | chr8_1:56748277-56748296 | Msa1203000:CDS | 35.0% | |
CATTGTACATGAGAATGAGT+AGG | + | chr8_1:56748570-56748589 | None:intergenic | 35.0% | |
!! | CAATTATATGGCTAGTCTCG+TGG | - | chr8_1:56744257-56744276 | Msa1203000:three_prime_UTR | 40.0% |
AGTCTTCCTATGAACGTGTT+TGG | - | chr8_1:56744386-56744405 | Msa1203000:intron | 40.0% | |
GTTGAGCAGGAAATGAAGTT+TGG | - | chr8_1:56744525-56744544 | Msa1203000:intron | 40.0% | |
AGCAGGAAATGAAGTTTGGT+TGG | - | chr8_1:56744529-56744548 | Msa1203000:intron | 40.0% | |
TTTGGTTGGAGAATTGTCGT+AGG | - | chr8_1:56744543-56744562 | Msa1203000:intron | 40.0% | |
!!! | TGGATTTTTTGGAGCAGCAT+TGG | - | chr8_1:56744575-56744594 | Msa1203000:CDS | 40.0% |
!!! | GGATTTTTTGGAGCAGCATT+GGG | - | chr8_1:56744576-56744595 | Msa1203000:CDS | 40.0% |
! | TCGCGTCTCAAATACAGTTT+TGG | - | chr8_1:56744775-56744794 | Msa1203000:intron | 40.0% |
TTCATATAGTTTCCGAACCG+CGG | + | chr8_1:56744842-56744861 | None:intergenic | 40.0% | |
!! | ATATGAACTAGCTCTGAACG+CGG | - | chr8_1:56744855-56744874 | Msa1203000:CDS | 40.0% |
TAAGTGGCATGTCTAGTGTA+GGG | + | chr8_1:56744994-56745013 | None:intergenic | 40.0% | |
ATAAGTGGCATGTCTAGTGT+AGG | + | chr8_1:56744995-56745014 | None:intergenic | 40.0% | |
TGCAGCCAACATATTGCATT+TGG | - | chr8_1:56745302-56745321 | Msa1203000:CDS | 40.0% | |
TTGCTTAGGCAATCCCAATT+CGG | + | chr8_1:56745342-56745361 | None:intergenic | 40.0% | |
GTAAATGCGTTGGATTGCTT+AGG | + | chr8_1:56745356-56745375 | None:intergenic | 40.0% | |
ACCGACAAATTGAGATCAGA+CGG | - | chr8_1:56745394-56745413 | Msa1203000:intron | 40.0% | |
ACCGTCTGATCTCAATTTGT+CGG | + | chr8_1:56745398-56745417 | None:intergenic | 40.0% | |
AGAGAGAAAAAGGAAGAGAG+AGG | + | chr8_1:56745535-56745554 | None:intergenic | 40.0% | |
! | TATCCAGTTGATGCAACACA+TGG | - | chr8_1:56745772-56745791 | Msa1203000:intron | 40.0% |
TTGATGCAACACATGGTGAT+AGG | - | chr8_1:56745779-56745798 | Msa1203000:intron | 40.0% | |
! | GCCTTTGACTAAAGCTTTAG+TGG | + | chr8_1:56745810-56745829 | None:intergenic | 40.0% |
!! | TAGTCAAAGGCATCGATACA+TGG | - | chr8_1:56745819-56745838 | Msa1203000:intron | 40.0% |
!! | AGGCATCGATACATGGAAAA+AGG | - | chr8_1:56745826-56745845 | Msa1203000:intron | 40.0% |
GTTTGTAGGCACTTACAATC+AGG | + | chr8_1:56746005-56746024 | None:intergenic | 40.0% | |
TCTTCATCTTGTAGATCAGC+TGG | + | chr8_1:56746227-56746246 | None:intergenic | 40.0% | |
AGCTGATCTACAAGATGAAG+AGG | - | chr8_1:56746226-56746245 | Msa1203000:CDS | 40.0% | |
AGAATGATCTGGAAAACCCT+TGG | + | chr8_1:56746261-56746280 | None:intergenic | 40.0% | |
ACTTGACAACATTCACTGGA+AGG | - | chr8_1:56746351-56746370 | Msa1203000:intron | 40.0% | |
TTGGCTTCTTAATTCCTTGC+AGG | - | chr8_1:56746556-56746575 | Msa1203000:intron | 40.0% | |
! | TATTCTTAATCGGTGTTCCG+GGG | + | chr8_1:56746878-56746897 | None:intergenic | 40.0% |
! | GTATTCTTAATCGGTGTTCC+GGG | + | chr8_1:56746879-56746898 | None:intergenic | 40.0% |
GAAGCCATATGCTTATGCAA+AGG | - | chr8_1:56747267-56747286 | Msa1203000:intron | 40.0% | |
AGTAATTGCATCAAGGGGAA+AGG | - | chr8_1:56747296-56747315 | Msa1203000:intron | 40.0% | |
ATCTGTCTTTACTGCTTCTG+TGG | - | chr8_1:56747342-56747361 | Msa1203000:intron | 40.0% | |
TGCTTCTGTGGAATAATAGC+TGG | - | chr8_1:56747354-56747373 | Msa1203000:intron | 40.0% | |
CTGTGGAATAATAGCTGGTA+TGG | - | chr8_1:56747359-56747378 | Msa1203000:intron | 40.0% | |
!!! | GGGACCATTGTTTTTGGAAT+TGG | - | chr8_1:56747419-56747438 | Msa1203000:intron | 40.0% |
ATATTGTACCACTGACATGG+AGG | + | chr8_1:56747747-56747766 | None:intergenic | 40.0% | |
! | GTTTCTTACCATAGGGTACT+GGG | + | chr8_1:56747787-56747806 | None:intergenic | 40.0% |
TGTTTCTTACCATAGGGTAC+TGG | + | chr8_1:56747788-56747807 | None:intergenic | 40.0% | |
ACTGATTGCGCTCACAAAAA+TGG | + | chr8_1:56748030-56748049 | None:intergenic | 40.0% | |
TTTGTGAGCGCAATCAGTTT+AGG | - | chr8_1:56748032-56748051 | Msa1203000:CDS | 40.0% | |
!!! | GTCTCATTTTTGGCTATCAC+AGG | - | chr8_1:56748185-56748204 | Msa1203000:intron | 40.0% |
!!! | TCATTTTTGGCTATCACAGG+TGG | - | chr8_1:56748188-56748207 | Msa1203000:intron | 40.0% |
!!! | CATTTTTGGCTATCACAGGT+GGG | - | chr8_1:56748189-56748208 | Msa1203000:intron | 40.0% |
!!! | ATTTTTGGCTATCACAGGTG+GGG | - | chr8_1:56748190-56748209 | Msa1203000:intron | 40.0% |
!!! | CCCCAAATTTTTTTCCATGG+TGG | + | chr8_1:56748280-56748299 | None:intergenic | 40.0% |
GCAGATTGTGTAACAATGAC+TGG | - | chr8_1:56748401-56748420 | Msa1203000:five_prime_UTR | 40.0% | |
GCTATTGCAGGCATGATTAC+AGG | - | chr8_1:56744926-56744945 | Msa1203000:intron | 45.0% | |
GTAATACACTGTTGACCCAG+CGG | + | chr8_1:56744954-56744973 | None:intergenic | 45.0% | |
TTCCAGCCTATGCTAATGCT+AGG | - | chr8_1:56745037-56745056 | Msa1203000:intron | 45.0% | |
TTCCTAGCATTAGCATAGGC+TGG | + | chr8_1:56745042-56745061 | None:intergenic | 45.0% | |
ATCAGCATATAGGTGGTCGT+TGG | + | chr8_1:56745692-56745711 | None:intergenic | 45.0% | |
TCACGCAATCAGCATATAGG+TGG | + | chr8_1:56745699-56745718 | None:intergenic | 45.0% | |
GCATCACGCAATCAGCATAT+AGG | + | chr8_1:56745702-56745721 | None:intergenic | 45.0% | |
TCACCATGTGTTGCATCAAC+TGG | + | chr8_1:56745778-56745797 | None:intergenic | 45.0% | |
GAACTTTCAGGAAGCCTTTG+AGG | - | chr8_1:56745947-56745966 | Msa1203000:intron | 45.0% | |
CAAGGGGAAAGGAAATCACT+TGG | - | chr8_1:56747307-56747326 | Msa1203000:intron | 45.0% | |
!! | GGTATGGTTAGTGGTTTGCT+TGG | - | chr8_1:56747375-56747394 | Msa1203000:intron | 45.0% |
!! | GTTAGTGGTTTGCTTGGTCT+AGG | - | chr8_1:56747381-56747400 | Msa1203000:intron | 45.0% |
! | TCTAGGAGGTGGCTTCATTT+TGG | - | chr8_1:56747398-56747417 | Msa1203000:intron | 45.0% |
! | CTAGGAGGTGGCTTCATTTT+GGG | - | chr8_1:56747399-56747418 | Msa1203000:intron | 45.0% |
GAATGAGTTTGTACCTGAGG+AGG | + | chr8_1:56747450-56747469 | None:intergenic | 45.0% | |
TTTCTCTTCCTCCATGTCAG+TGG | - | chr8_1:56747736-56747755 | Msa1203000:intron | 45.0% | |
GCAACCATAGCTGCATTAAC+CGG | - | chr8_1:56747933-56747952 | Msa1203000:CDS | 45.0% | |
AGGCAACATGGTTGAGAAGA+TGG | - | chr8_1:56748220-56748239 | Msa1203000:CDS | 45.0% | |
TTTGACAATCTCTGCCACCA+TGG | - | chr8_1:56748263-56748282 | Msa1203000:CDS | 45.0% | |
CACAGGCCAAACACGTTCAT+AGG | + | chr8_1:56744395-56744414 | None:intergenic | 50.0% | |
! | TTGGGAAGTGTAGGAGGAGT+AGG | - | chr8_1:56744594-56744613 | Msa1203000:CDS | 50.0% |
GAGAGGGCTGTAGAAGACTT+TGG | + | chr8_1:56744669-56744688 | None:intergenic | 50.0% | |
CATTTGGGCTGCTTCCTCAA+AGG | + | chr8_1:56745964-56745983 | None:intergenic | 50.0% | |
TGAGGAAGCAGCCCAAATGT+TGG | - | chr8_1:56745965-56745984 | Msa1203000:intron | 50.0% | |
GCAGCCCAAATGTTGGAATC+AGG | - | chr8_1:56745972-56745991 | Msa1203000:intron | 50.0% | |
AGAAATGTTAACCGGTGCCC+CGG | - | chr8_1:56746858-56746877 | Msa1203000:intron | 50.0% | |
GTATCCTTAACCAGTGCCCA+GGG | - | chr8_1:56747005-56747024 | Msa1203000:intron | 50.0% | |
!! | AGTGGTTTGCTTGGTCTAGG+AGG | - | chr8_1:56747384-56747403 | Msa1203000:intron | 50.0% |
GGAATTGGGAATTCCTCCTC+AGG | - | chr8_1:56747434-56747453 | Msa1203000:intron | 50.0% | |
TTGGCCGGTTAATGCAGCTA+TGG | + | chr8_1:56747940-56747959 | None:intergenic | 50.0% | |
TGCATTAACCGGCCAACATG+TGG | - | chr8_1:56747944-56747963 | Msa1203000:CDS | 50.0% | |
CTTTCTCACCACATGTTGGC+CGG | + | chr8_1:56747955-56747974 | None:intergenic | 50.0% | |
! | GGAGCAGCATTGGGAAGTGT+AGG | - | chr8_1:56744585-56744604 | Msa1203000:CDS | 55.0% |
! | GCAGCATTGGGAAGTGTAGG+AGG | - | chr8_1:56744588-56744607 | Msa1203000:CDS | 55.0% |
! | GGAAGTGTAGGAGGAGTAGG+AGG | - | chr8_1:56744597-56744616 | Msa1203000:CDS | 55.0% |
AGTGTAGGAGGAGTAGGAGG+TGG | - | chr8_1:56744600-56744619 | Msa1203000:CDS | 55.0% | |
! | TAGTAGCATGTGGTTGGCCG+CGG | - | chr8_1:56744822-56744841 | Msa1203000:CDS | 55.0% |
GCATGATTACAGGAGCCGCT+GGG | - | chr8_1:56744936-56744955 | Msa1203000:intron | 55.0% | |
GGTATCCTTAACCAGTGCCC+AGG | - | chr8_1:56747004-56747023 | Msa1203000:intron | 55.0% | |
TCATGCTAACCGGTGTCCCT+GGG | + | chr8_1:56747024-56747043 | None:intergenic | 55.0% | |
! | GGTTTGCTTGGTCTAGGAGG+TGG | - | chr8_1:56747387-56747406 | Msa1203000:intron | 55.0% |
GATCGCTTCCCAGTACCCTA+TGG | - | chr8_1:56747776-56747795 | Msa1203000:intron | 55.0% | |
TTTGGCTATCACAGGTGGGG+TGG | - | chr8_1:56748193-56748212 | Msa1203000:intron | 55.0% | |
TTGGCTATCACAGGTGGGGT+GGG | - | chr8_1:56748194-56748213 | Msa1203000:intron | 55.0% | |
ATCACAGGTGGGGTGGGAAT+AGG | - | chr8_1:56748200-56748219 | Msa1203000:CDS | 55.0% | |
TGGGGTGGGAATAGGCAACA+TGG | - | chr8_1:56748208-56748227 | Msa1203000:CDS | 55.0% | |
GTAGGAGGAGTAGGAGGTGG+AGG | - | chr8_1:56744603-56744622 | Msa1203000:CDS | 60.0% | |
GGCATGATTACAGGAGCCGC+TGG | - | chr8_1:56744935-56744954 | Msa1203000:intron | 60.0% | |
! | TAATCGGTGTTCCGGGGCAC+CGG | + | chr8_1:56746872-56746891 | None:intergenic | 60.0% |
!! | GTGTCCCTGGGCACTGGTTA+AGG | + | chr8_1:56747012-56747031 | None:intergenic | 60.0% |
TAACCAGTGCCCAGGGACAC+CGG | - | chr8_1:56747012-56747031 | Msa1203000:intron | 60.0% | |
GTCATGCTAACCGGTGTCCC+TGG | + | chr8_1:56747025-56747044 | None:intergenic | 60.0% | |
! | GCATGTGGTTGGCCGCGGTT+CGG | - | chr8_1:56744827-56744846 | Msa1203000:CDS | 65.0% |
TAACCGGTGTCCCTGGGCAC+TGG | + | chr8_1:56747018-56747037 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 56744018 | 56748593 | 56744018 | ID=Msa1203000;Name=Msa1203000 |
chr8_1 | mRNA | 56744018 | 56748593 | 56744018 | ID=Msa1203000-mRNA-1;Parent=Msa1203000;Name=Msa1203000-mRNA-1;_AED=0.19;_eAED=0.19;_QI=193|1|1|1|1|1|12|289|473 |
chr8_1 | exon | 56744018 | 56744404 | 56744018 | ID=Msa1203000-mRNA-1:exon:18540;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56744558 | 56744698 | 56744558 | ID=Msa1203000-mRNA-1:exon:18539;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56744814 | 56744907 | 56744814 | ID=Msa1203000-mRNA-1:exon:18538;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56745156 | 56745374 | 56745156 | ID=Msa1203000-mRNA-1:exon:18537;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56746034 | 56746084 | 56746034 | ID=Msa1203000-mRNA-1:exon:18536;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56746182 | 56746268 | 56746182 | ID=Msa1203000-mRNA-1:exon:18535;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56746364 | 56746416 | 56746364 | ID=Msa1203000-mRNA-1:exon:18534;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56746603 | 56746654 | 56746603 | ID=Msa1203000-mRNA-1:exon:18533;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56746746 | 56746810 | 56746746 | ID=Msa1203000-mRNA-1:exon:18532;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56747475 | 56747675 | 56747475 | ID=Msa1203000-mRNA-1:exon:18531;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56747918 | 56748077 | 56747918 | ID=Msa1203000-mRNA-1:exon:18530;Parent=Msa1203000-mRNA-1 |
chr8_1 | exon | 56748200 | 56748593 | 56748200 | ID=Msa1203000-mRNA-1:exon:18529;Parent=Msa1203000-mRNA-1 |
chr8_1 | five_prime_UTR | 56748401 | 56748593 | 56748401 | ID=Msa1203000-mRNA-1:five_prime_utr;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56748200 | 56748400 | 56748200 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56747918 | 56748077 | 56747918 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56747475 | 56747675 | 56747475 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56746746 | 56746810 | 56746746 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56746603 | 56746654 | 56746603 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56746364 | 56746416 | 56746364 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56746182 | 56746268 | 56746182 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56746034 | 56746084 | 56746034 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56745156 | 56745374 | 56745156 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56744814 | 56744907 | 56744814 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56744558 | 56744698 | 56744558 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | CDS | 56744307 | 56744404 | 56744307 | ID=Msa1203000-mRNA-1:cds;Parent=Msa1203000-mRNA-1 |
chr8_1 | three_prime_UTR | 56744018 | 56744306 | 56744018 | ID=Msa1203000-mRNA-1:three_prime_utr;Parent=Msa1203000-mRNA-1 |
Gene Sequence |
Protein sequence |