AlfalfaGEDB | Msa1258050

M. sativa cultivar zhongmu-4 / Msa1258050

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258050	XP_003608796.1	93.103	174	10	1	1	174	1	172	3.65e-113	328

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258050	G7JK81	93.103	174	10	1	1	174	1	172	1.74e-113	328

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036430	Msa1258050	0.838925	2.152667e-57	-8.615850e-47
Msa0044100	Msa1258050	0.802759	4.817894e-49	-8.615850e-47
Msa0084500	Msa1258050	0.803786	2.952791e-49	-8.615850e-47
Msa0096000	Msa1258050	0.805655	1.201793e-49	-8.615850e-47
Msa0097990	Msa1258050	0.804219	2.399936e-49	-8.615850e-47
Msa0611380	Msa1258050	0.865048	7.831613e-65	-8.615850e-47
Msa0618180	Msa1258050	0.818855	1.576302e-52	-8.615850e-47
Msa0618220	Msa1258050	0.810288	1.241671e-50	-8.615850e-47
Msa0618290	Msa1258050	0.803229	3.850513e-49	-8.615850e-47
Msa0628640	Msa1258050	0.879036	1.728742e-69	-8.615850e-47
Msa0631120	Msa1258050	0.881116	3.135534e-70	-8.615850e-47
Msa0666030	Msa1258050	0.856303	3.523616e-62	-8.615850e-47
Msa0669340	Msa1258050	0.861965	7.079379e-64	-8.615850e-47
Msa0684500	Msa1258050	0.803720	3.047097e-49	-8.615850e-47
Msa0701970	Msa1258050	0.823563	1.294860e-53	-8.615850e-47
Msa0716450	Msa1258050	0.842837	2.026380e-58	-8.615850e-47
Msa0717260	Msa1258050	0.868820	4.913792e-66	-8.615850e-47
Msa0734230	Msa1258050	0.822318	2.526016e-53	-8.615850e-47
Msa0758320	Msa1258050	0.871861	4.949356e-67	-8.615850e-47
Msa0775440	Msa1258050	0.838646	2.540606e-57	-8.615850e-47
Msa0799030	Msa1258050	0.851153	1.068594e-60	-8.615850e-47
Msa0799700	Msa1258050	0.859894	3.015854e-63	-8.615850e-47
Msa0812820	Msa1258050	0.855381	6.556391e-62	-8.615850e-47
Msa0837440	Msa1258050	0.840088	1.073483e-57	-8.615850e-47
Msa0837980	Msa1258050	0.870729	1.171322e-66	-8.615850e-47
Msa0130570	Msa1258050	0.804746	1.862767e-49	-8.615850e-47
Msa0141100	Msa1258050	0.855384	6.542872e-62	-8.615850e-47
Msa0148340	Msa1258050	0.802506	5.432657e-49	-8.615850e-47
Msa0176470	Msa1258050	0.800746	1.247344e-48	-8.615850e-47
Msa0183750	Msa1258050	0.821770	3.384325e-53	-8.615850e-47
Msa0191040	Msa1258050	0.838555	2.682723e-57	-8.615850e-47
Msa0220300	Msa1258050	0.842770	2.110574e-58	-8.615850e-47
Msa0233340	Msa1258050	0.838433	2.883593e-57	-8.615850e-47
Msa0236440	Msa1258050	0.811049	8.501148e-51	-8.615850e-47
Msa1227950	Msa1258050	0.808104	3.648886e-50	-8.615850e-47
Msa1227970	Msa1258050	0.810966	8.863118e-51	-8.615850e-47
Msa1255280	Msa1258050	0.866187	3.425482e-65	-8.615850e-47
Msa1258050	Msa1266960	0.862151	6.208719e-64	-8.615850e-47
Msa1258050	Msa1339940	0.826419	2.741041e-54	-8.615850e-47
Msa1258050	Msa1369700	0.819920	9.012252e-53	-8.615850e-47
Msa1258050	Msa1395870	0.870639	1.253916e-66	-8.615850e-47
Msa1258050	Msa1397340	0.809050	2.291666e-50	-8.615850e-47
Msa1258050	Msa1399560	0.862420	5.133659e-64	-8.615850e-47
Msa1258050	Msa1401150	0.808419	3.126133e-50	-8.615850e-47
Msa1258050	Msa1437190	0.817115	3.898979e-52	-8.615850e-47
Msa1258050	Msa1443840	0.861925	7.282010e-64	-8.615850e-47
Msa1258050	Msa1449730	0.804388	2.212837e-49	-8.615850e-47
Msa1258050	Msa1452060	0.832230	1.064209e-55	-8.615850e-47
Msa1258050	Msa1460380	0.837397	5.324936e-57	-8.615850e-47
Msa0374850	Msa1258050	0.845864	3.113201e-59	-8.615850e-47
Msa0375090	Msa1258050	0.848691	5.217323e-60	-8.615850e-47
Msa0470340	Msa1258050	0.856941	2.288706e-62	-8.615850e-47
Msa0470860	Msa1258050	0.831300	1.805125e-55	-8.615850e-47
Msa0480950	Msa1258050	0.940255	3.190023e-100	-8.615850e-47
Msa0481110	Msa1258050	0.850539	1.590386e-60	-8.615850e-47
Msa0981010	Msa1258050	0.803657	3.140052e-49	-8.615850e-47
Msa1002620	Msa1258050	0.831286	1.818980e-55	-8.615850e-47
Msa1033560	Msa1258050	0.859473	4.037056e-63	-8.615850e-47
Msa1073340	Msa1258050	0.808387	3.176133e-50	-8.615850e-47
Msa0251240	Msa1258050	0.817260	3.616429e-52	-8.615850e-47
Msa0266450	Msa1258050	0.804335	2.270118e-49	-8.615850e-47
Msa0271040	Msa1258050	0.808069	3.711028e-50	-8.615850e-47
Msa0288190	Msa1258050	0.802000	6.905181e-49	-8.615850e-47
Msa0309350	Msa1258050	0.814449	1.532135e-51	-8.615850e-47
Msa0311690	Msa1258050	0.836469	9.190994e-57	-8.615850e-47
Msa0315250	Msa1258050	0.818018	2.440339e-52	-8.615850e-47
Msa0326540	Msa1258050	0.805028	1.626720e-49	-8.615850e-47
Msa1113850	Msa1258050	0.849506	3.096396e-60	-8.615850e-47
Msa1160400	Msa1258050	0.833044	6.684563e-56	-8.615850e-47
Msa1190120	Msa1258050	0.870765	1.139087e-66	-8.615850e-47
Msa1203000	Msa1258050	0.875109	3.992019e-68	-8.615850e-47
Msa1211550	Msa1258050	0.840649	7.656486e-58	-8.615850e-47
Msa1217940	Msa1258050	0.847872	8.784010e-60	-8.615850e-47
Msa1219260	Msa1258050	0.867946	9.406641e-66	-8.615850e-47
Msa0520510	Msa1258050	0.812159	4.876721e-51	-8.615850e-47
Msa0531430	Msa1258050	0.869490	2.978161e-66	-8.615850e-47
Msa0534570	Msa1258050	0.841930	3.523755e-58	-8.615850e-47
Msa0534590	Msa1258050	0.867205	1.624938e-65	-8.615850e-47
Msa0565600	Msa1258050	0.825116	5.585585e-54	-8.615850e-47
Msa0590800	Msa1258050	0.870464	1.430746e-66	-8.615850e-47
Msa0853320	Msa1258050	0.884595	1.676922e-71	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258050	MtrunA17_Chr4g0056791	93.103	174	10	1	1	174	1	172	3.36e-117	328
Msa1258050	MtrunA17_Chr5g0398651	64.815	108	33	1	41	143	5	112	4.05e-41	134
Msa1258050	MtrunA17_Chr4g0027171	44.615	130	58	2	57	174	69	196	1.40e-29	107
Msa1258050	MtrunA17_Chr2g0320881	48.182	110	56	1	57	165	57	166	2.51e-26	99.4

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1258050	AT2G27830.1	45.968	124	58	2	57	172	68	190	5.49e-32	114

Find 45 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGATCAGTGTTCTTCAAAAT+TGG	0.195240	8_2:+59148666	None:intergenic
GTTTCTCTGGCTGTGAATTA+TGG	0.269497	8_2:+59148898	None:intergenic
CATTACTTTGGAAAGTGAAT+TGG	0.299193	8_2:+59148619	None:intergenic
CAATGGATTCTTCATTTCCT+TGG	0.316089	8_2:-59148194	Msa1258050:CDS
GCGGAGAAGTCATGCTTATA+AGG	0.356705	8_2:+59148979	None:intergenic
TGTCTCTAAACAAAACAATA+AGG	0.368608	8_2:-59149029	Msa1258050:five_prime_UTR
ATTACTTTGGAAAGTGAATT+GGG	0.392489	8_2:+59148620	None:intergenic
CACAGTTGAAGATTTGATAA+AGG	0.392539	8_2:-59148724	Msa1258050:CDS
GCTGTGAATTATGGAGTTTA+CGG	0.413396	8_2:+59148907	None:intergenic
AGAATTCAACGGGGTCTTAC+CGG	0.420392	8_2:+59148932	None:intergenic
GTTTACGGCAAGAATTCAAC+GGG	0.423723	8_2:+59148922	None:intergenic
ACATTGCCAGAGGGTTTCTC+TGG	0.447363	8_2:+59148885	None:intergenic
AGACGAGAAGTTAGTGAGCT+TGG	0.447814	8_2:-59148292	Msa1258050:CDS
AGGCATATCACGTCTCCTGC+AGG	0.475516	8_2:-59148141	Msa1258050:three_prime_UTR
GTGACAATCGAAAACAGCTT+GGG	0.499309	8_2:-59148777	Msa1258050:CDS
AAACTAATGACACTGTTCTT+CGG	0.503212	8_2:-59148821	Msa1258050:CDS
CTGCATGGTGCATGAAGAAA+CGG	0.506540	8_2:+59148230	None:intergenic
AAGCATGACTTCTCCGCCAC+AGG	0.512058	8_2:-59148973	Msa1258050:exon
AGTTAGTGAGCTTGGAGTCA+AGG	0.514747	8_2:-59148284	Msa1258050:CDS
CTTCTCCGCCACAGGCTCAT+CGG	0.524598	8_2:-59148965	Msa1258050:CDS
ACATATTAGTAAGTAACATT+CGG	0.532723	8_2:-59148066	Msa1258050:three_prime_UTR
GGTGACAATCGAAAACAGCT+TGG	0.547560	8_2:-59148778	Msa1258050:CDS
AATTTCATTACATACTCGAC+AGG	0.551601	8_2:+59148022	None:intergenic
TGCCACATTCTCATTCTGCA+TGG	0.554134	8_2:+59148215	None:intergenic
GTTTGCATCTTCAGCGTCAG+AGG	0.563732	8_2:+59148840	None:intergenic
AATTGCATAAAATTCCCTGC+AGG	0.579334	8_2:+59148126	None:intergenic
CCTCTGGCAATGTTGATCGT+CGG	0.591836	8_2:-59148875	Msa1258050:CDS
TCACAGCCAGAGAAACCCTC+TGG	0.594528	8_2:-59148891	Msa1258050:CDS
TTTCTCCGATGAGCCTGTGG+CGG	0.602364	8_2:+59148960	None:intergenic
GGCATATCACGTCTCCTGCA+GGG	0.602401	8_2:-59148140	Msa1258050:three_prime_UTR
GCCATCAAAACTGCTACTGA+AGG	0.605105	8_2:-59148799	Msa1258050:CDS
TGCATGGTGCATGAAGAAAC+GGG	0.610698	8_2:+59148231	None:intergenic
GCAGAATGAGAATGTGGCAA+TGG	0.617184	8_2:-59148211	Msa1258050:CDS
AGTTTACGGCAAGAATTCAA+CGG	0.621562	8_2:+59148921	None:intergenic
TAATGAAGATCATAACACCT+TGG	0.638724	8_2:+59148645	None:intergenic
AAATTGACTAAAATCATCCA+AGG	0.645086	8_2:+59148177	None:intergenic
CACCATGCAGAATGAGAATG+TGG	0.646013	8_2:-59148217	Msa1258050:CDS
AGTTGAAGATTTGATAAAGG+CGG	0.653116	8_2:-59148721	Msa1258050:CDS
ATTCAACGGGGTCTTACCGG+AGG	0.655189	8_2:+59148935	None:intergenic
CGACGATCAACATTGCCAGA+GGG	0.655617	8_2:+59148876	None:intergenic
TCAGATGTTGATGTTGTCTG+AGG	0.666940	8_2:-59148748	Msa1258050:CDS
TTTACGAGAAGGATAAGAGG+AGG	0.685585	8_2:-59148689	Msa1258050:CDS
CCGACGATCAACATTGCCAG+AGG	0.706693	8_2:+59148875	None:intergenic
ATGGTGCATGAAGAAACGGG+TGG	0.830690	8_2:+59148234	None:intergenic
TTTACGGCAAGAATTCAACG+GGG	0.837986	8_2:+59148923	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TCAAAATGATTGTTTTTTTT+AGG	+	chr8_2:59148549-59148568	None:intergenic	15.0%
!!	CAAGTAAAAATACTTATAAT+GGG	+	chr8_2:59148915-59148934	None:intergenic	15.0%
!!	TCAAGTAAAAATACTTATAA+TGG	+	chr8_2:59148916-59148935	None:intergenic	15.0%
!!!	TCAAAATGATTGTTTTTTTT+AGG	+	chr8_2:59148549-59148568	None:intergenic	15.0%
!!	CAAGTAAAAATACTTATAAT+GGG	+	chr8_2:59148915-59148934	None:intergenic	15.0%
!!	TCAAGTAAAAATACTTATAA+TGG	+	chr8_2:59148916-59148935	None:intergenic	15.0%
!!!	TGTAGTTTTAGTACTATTTT+TGG	+	chr8_2:59148478-59148497	None:intergenic	20.0%
!!	AATAGTACTAAAACTACAAA+AGG	-	chr8_2:59148480-59148499	Msa1258050:intron	20.0%
!!!	AAAAAACAATCATTTTGAGT+TGG	-	chr8_2:59148551-59148570	Msa1258050:intron	20.0%
!!	ACATATTAGTAAGTAACATT+CGG	-	chr8_2:59148815-59148834	Msa1258050:CDS	20.0%
!!!	TAAAAATACTTATAATGGGA+TGG	+	chr8_2:59148911-59148930	None:intergenic	20.0%
!!!	TGTAGTTTTAGTACTATTTT+TGG	+	chr8_2:59148478-59148497	None:intergenic	20.0%
!!	AATAGTACTAAAACTACAAA+AGG	-	chr8_2:59148480-59148499	Msa1258050:intron	20.0%
!!!	AAAAAACAATCATTTTGAGT+TGG	-	chr8_2:59148551-59148570	Msa1258050:intron	20.0%
!!	ACATATTAGTAAGTAACATT+CGG	-	chr8_2:59148815-59148834	Msa1258050:CDS	20.0%
!!!	TAAAAATACTTATAATGGGA+TGG	+	chr8_2:59148911-59148930	None:intergenic	20.0%
!!!	TTATTGTTTTGTTTAGAGAC+AGG	+	chr8_2:59147853-59147872	None:intergenic	25.0%
!	TGTCTCTAAACAAAACAATA+AGG	-	chr8_2:59147852-59147871	Msa1258050:three_prime_UTR	25.0%
!!	ATTACTTTGGAAAGTGAATT+GGG	+	chr8_2:59148264-59148283	None:intergenic	25.0%
!	TTAGTAAGAAGTCATTACTT+TGG	+	chr8_2:59148277-59148296	None:intergenic	25.0%
!!!	AATGTTCTGTTTTTCATTCA+TGG	-	chr8_2:59148337-59148356	Msa1258050:intron	25.0%
!	CTAAAACTACAAAAGGATAA+TGG	-	chr8_2:59148487-59148506	Msa1258050:intron	25.0%
!	AAATTGACTAAAATCATCCA+AGG	+	chr8_2:59148707-59148726	None:intergenic	25.0%
!!	TCAATTTTCTGCTATAAAGT+AGG	-	chr8_2:59148720-59148739	Msa1258050:CDS	25.0%
!!!	TTATTGTTTTGTTTAGAGAC+AGG	+	chr8_2:59147853-59147872	None:intergenic	25.0%
!	TGTCTCTAAACAAAACAATA+AGG	-	chr8_2:59147852-59147871	Msa1258050:three_prime_UTR	25.0%
!!	ATTACTTTGGAAAGTGAATT+GGG	+	chr8_2:59148264-59148283	None:intergenic	25.0%
!	TTAGTAAGAAGTCATTACTT+TGG	+	chr8_2:59148277-59148296	None:intergenic	25.0%
!!!	AATGTTCTGTTTTTCATTCA+TGG	-	chr8_2:59148337-59148356	Msa1258050:intron	25.0%
!	CTAAAACTACAAAAGGATAA+TGG	-	chr8_2:59148487-59148506	Msa1258050:intron	25.0%
!	AAATTGACTAAAATCATCCA+AGG	+	chr8_2:59148707-59148726	None:intergenic	25.0%
!!	TCAATTTTCTGCTATAAAGT+AGG	-	chr8_2:59148720-59148739	Msa1258050:CDS	25.0%
	AAACTAATGACACTGTTCTT+CGG	-	chr8_2:59148060-59148079	Msa1258050:three_prime_UTR	30.0%
	CACAGTTGAAGATTTGATAA+AGG	-	chr8_2:59148157-59148176	Msa1258050:exon	30.0%
	AGTTGAAGATTTGATAAAGG+CGG	-	chr8_2:59148160-59148179	Msa1258050:exon	30.0%
	TAATGAAGATCATAACACCT+TGG	+	chr8_2:59148239-59148258	None:intergenic	30.0%
!	CATTACTTTGGAAAGTGAAT+TGG	+	chr8_2:59148265-59148284	None:intergenic	30.0%
	AGCTCAAAACATAGAATTAG+GGG	+	chr8_2:59148307-59148326	None:intergenic	30.0%
	CAGCTCAAAACATAGAATTA+GGG	+	chr8_2:59148308-59148327	None:intergenic	30.0%
	TCAGCTCAAAACATAGAATT+AGG	+	chr8_2:59148309-59148328	None:intergenic	30.0%
	AATTTCATTACATACTCGAC+AGG	+	chr8_2:59148862-59148881	None:intergenic	30.0%
	AAACTAATGACACTGTTCTT+CGG	-	chr8_2:59148060-59148079	Msa1258050:three_prime_UTR	30.0%
	CACAGTTGAAGATTTGATAA+AGG	-	chr8_2:59148157-59148176	Msa1258050:exon	30.0%
	AGTTGAAGATTTGATAAAGG+CGG	-	chr8_2:59148160-59148179	Msa1258050:exon	30.0%
	TAATGAAGATCATAACACCT+TGG	+	chr8_2:59148239-59148258	None:intergenic	30.0%
!	CATTACTTTGGAAAGTGAAT+TGG	+	chr8_2:59148265-59148284	None:intergenic	30.0%
	AGCTCAAAACATAGAATTAG+GGG	+	chr8_2:59148307-59148326	None:intergenic	30.0%
	CAGCTCAAAACATAGAATTA+GGG	+	chr8_2:59148308-59148327	None:intergenic	30.0%
	TCAGCTCAAAACATAGAATT+AGG	+	chr8_2:59148309-59148328	None:intergenic	30.0%
	AATTTCATTACATACTCGAC+AGG	+	chr8_2:59148862-59148881	None:intergenic	30.0%
	AGTTTACGGCAAGAATTCAA+CGG	+	chr8_2:59147963-59147982	None:intergenic	35.0%
	GCTGTGAATTATGGAGTTTA+CGG	+	chr8_2:59147977-59147996	None:intergenic	35.0%
!	TGTTTTACGAGAAGGATAAG+AGG	-	chr8_2:59148189-59148208	Msa1258050:CDS	35.0%
	GGATCAGTGTTCTTCAAAAT+TGG	+	chr8_2:59148218-59148237	None:intergenic	35.0%
!!	TTTTGAAGAACACTGATCCA+AGG	-	chr8_2:59148219-59148238	Msa1258050:CDS	35.0%
!!	TCTGTTTTTCATTCATGGAC+TGG	-	chr8_2:59148342-59148361	Msa1258050:intron	35.0%
!!	CATTCATGGACTGGTTAATT+TGG	-	chr8_2:59148351-59148370	Msa1258050:intron	35.0%
!	CAATGGATTCTTCATTTCCT+TGG	-	chr8_2:59148687-59148706	Msa1258050:CDS	35.0%
	AATTGCATAAAATTCCCTGC+AGG	+	chr8_2:59148758-59148777	None:intergenic	35.0%
	AGTTTACGGCAAGAATTCAA+CGG	+	chr8_2:59147963-59147982	None:intergenic	35.0%
	GCTGTGAATTATGGAGTTTA+CGG	+	chr8_2:59147977-59147996	None:intergenic	35.0%
!	TGTTTTACGAGAAGGATAAG+AGG	-	chr8_2:59148189-59148208	Msa1258050:CDS	35.0%
	GGATCAGTGTTCTTCAAAAT+TGG	+	chr8_2:59148218-59148237	None:intergenic	35.0%
!!	TTTTGAAGAACACTGATCCA+AGG	-	chr8_2:59148219-59148238	Msa1258050:CDS	35.0%
!!	TCTGTTTTTCATTCATGGAC+TGG	-	chr8_2:59148342-59148361	Msa1258050:intron	35.0%
!!	CATTCATGGACTGGTTAATT+TGG	-	chr8_2:59148351-59148370	Msa1258050:intron	35.0%
!	CAATGGATTCTTCATTTCCT+TGG	-	chr8_2:59148687-59148706	Msa1258050:CDS	35.0%
	AATTGCATAAAATTCCCTGC+AGG	+	chr8_2:59148758-59148777	None:intergenic	35.0%
	TTTACGGCAAGAATTCAACG+GGG	+	chr8_2:59147961-59147980	None:intergenic	40.0%
	GTTTACGGCAAGAATTCAAC+GGG	+	chr8_2:59147962-59147981	None:intergenic	40.0%
	GTTTCTCTGGCTGTGAATTA+TGG	+	chr8_2:59147986-59148005	None:intergenic	40.0%
!!	ACCTTCAGTAGCAGTTTTGA+TGG	+	chr8_2:59148086-59148105	None:intergenic	40.0%
	GTGACAATCGAAAACAGCTT+GGG	-	chr8_2:59148104-59148123	Msa1258050:three_prime_UTR	40.0%
	TCAGATGTTGATGTTGTCTG+AGG	-	chr8_2:59148133-59148152	Msa1258050:three_prime_UTR	40.0%
	TTTACGAGAAGGATAAGAGG+AGG	-	chr8_2:59148192-59148211	Msa1258050:CDS	40.0%
!!!	CAATCATTTTGAGTTGGTGC+AGG	-	chr8_2:59148557-59148576	Msa1258050:intron	40.0%
	TTTACGGCAAGAATTCAACG+GGG	+	chr8_2:59147961-59147980	None:intergenic	40.0%
	GTTTACGGCAAGAATTCAAC+GGG	+	chr8_2:59147962-59147981	None:intergenic	40.0%
	GTTTCTCTGGCTGTGAATTA+TGG	+	chr8_2:59147986-59148005	None:intergenic	40.0%
!!	ACCTTCAGTAGCAGTTTTGA+TGG	+	chr8_2:59148086-59148105	None:intergenic	40.0%
	GTGACAATCGAAAACAGCTT+GGG	-	chr8_2:59148104-59148123	Msa1258050:three_prime_UTR	40.0%
	TCAGATGTTGATGTTGTCTG+AGG	-	chr8_2:59148133-59148152	Msa1258050:three_prime_UTR	40.0%
	TTTACGAGAAGGATAAGAGG+AGG	-	chr8_2:59148192-59148211	Msa1258050:CDS	40.0%
!!!	CAATCATTTTGAGTTGGTGC+AGG	-	chr8_2:59148557-59148576	Msa1258050:intron	40.0%
	GCGGAGAAGTCATGCTTATA+AGG	+	chr8_2:59147905-59147924	None:intergenic	45.0%
	AGAATTCAACGGGGTCTTAC+CGG	+	chr8_2:59147952-59147971	None:intergenic	45.0%
	GCCATCAAAACTGCTACTGA+AGG	-	chr8_2:59148082-59148101	Msa1258050:three_prime_UTR	45.0%
	GGTGACAATCGAAAACAGCT+TGG	-	chr8_2:59148103-59148122	Msa1258050:three_prime_UTR	45.0%
!	GGCGTTAGTGTTTTACGAGA+AGG	-	chr8_2:59148181-59148200	Msa1258050:CDS	45.0%
	AGACGAGAAGTTAGTGAGCT+TGG	-	chr8_2:59148589-59148608	Msa1258050:intron	45.0%
	AGTTAGTGAGCTTGGAGTCA+AGG	-	chr8_2:59148597-59148616	Msa1258050:intron	45.0%
	TGCATGGTGCATGAAGAAAC+GGG	+	chr8_2:59148653-59148672	None:intergenic	45.0%
	CTGCATGGTGCATGAAGAAA+CGG	+	chr8_2:59148654-59148673	None:intergenic	45.0%
	CACCATGCAGAATGAGAATG+TGG	-	chr8_2:59148664-59148683	Msa1258050:CDS	45.0%
	TGCCACATTCTCATTCTGCA+TGG	+	chr8_2:59148669-59148688	None:intergenic	45.0%
	GCAGAATGAGAATGTGGCAA+TGG	-	chr8_2:59148670-59148689	Msa1258050:CDS	45.0%
	GCGGAGAAGTCATGCTTATA+AGG	+	chr8_2:59147905-59147924	None:intergenic	45.0%
	AGAATTCAACGGGGTCTTAC+CGG	+	chr8_2:59147952-59147971	None:intergenic	45.0%
	GCCATCAAAACTGCTACTGA+AGG	-	chr8_2:59148082-59148101	Msa1258050:three_prime_UTR	45.0%
	GGTGACAATCGAAAACAGCT+TGG	-	chr8_2:59148103-59148122	Msa1258050:three_prime_UTR	45.0%
!	GGCGTTAGTGTTTTACGAGA+AGG	-	chr8_2:59148181-59148200	Msa1258050:CDS	45.0%
	AGACGAGAAGTTAGTGAGCT+TGG	-	chr8_2:59148589-59148608	Msa1258050:intron	45.0%
	AGTTAGTGAGCTTGGAGTCA+AGG	-	chr8_2:59148597-59148616	Msa1258050:intron	45.0%
	TGCATGGTGCATGAAGAAAC+GGG	+	chr8_2:59148653-59148672	None:intergenic	45.0%
	CTGCATGGTGCATGAAGAAA+CGG	+	chr8_2:59148654-59148673	None:intergenic	45.0%
	CACCATGCAGAATGAGAATG+TGG	-	chr8_2:59148664-59148683	Msa1258050:CDS	45.0%
	TGCCACATTCTCATTCTGCA+TGG	+	chr8_2:59148669-59148688	None:intergenic	45.0%
	GCAGAATGAGAATGTGGCAA+TGG	-	chr8_2:59148670-59148689	Msa1258050:CDS	45.0%
!	GTTTTTCTCCGATGAGCCTG+TGG	+	chr8_2:59147927-59147946	None:intergenic	50.0%
	GCTCATCGGAGAAAAACCTC+CGG	-	chr8_2:59147930-59147949	Msa1258050:three_prime_UTR	50.0%
	ACATTGCCAGAGGGTTTCTC+TGG	+	chr8_2:59147999-59148018	None:intergenic	50.0%
	CGACGATCAACATTGCCAGA+GGG	+	chr8_2:59148008-59148027	None:intergenic	50.0%
	CCTCTGGCAATGTTGATCGT+CGG	-	chr8_2:59148006-59148025	Msa1258050:three_prime_UTR	50.0%
	GTTTGCATCTTCAGCGTCAG+AGG	+	chr8_2:59148044-59148063	None:intergenic	50.0%
	ATGGTGCATGAAGAAACGGG+TGG	+	chr8_2:59148650-59148669	None:intergenic	50.0%
!	GTTTTTCTCCGATGAGCCTG+TGG	+	chr8_2:59147927-59147946	None:intergenic	50.0%
	GCTCATCGGAGAAAAACCTC+CGG	-	chr8_2:59147930-59147949	Msa1258050:three_prime_UTR	50.0%
	ACATTGCCAGAGGGTTTCTC+TGG	+	chr8_2:59147999-59148018	None:intergenic	50.0%
	CGACGATCAACATTGCCAGA+GGG	+	chr8_2:59148008-59148027	None:intergenic	50.0%
	CCTCTGGCAATGTTGATCGT+CGG	-	chr8_2:59148006-59148025	Msa1258050:three_prime_UTR	50.0%
	GTTTGCATCTTCAGCGTCAG+AGG	+	chr8_2:59148044-59148063	None:intergenic	50.0%
	ATGGTGCATGAAGAAACGGG+TGG	+	chr8_2:59148650-59148669	None:intergenic	50.0%
	AAGCATGACTTCTCCGCCAC+AGG	-	chr8_2:59147908-59147927	Msa1258050:three_prime_UTR	55.0%
	TTTCTCCGATGAGCCTGTGG+CGG	+	chr8_2:59147924-59147943	None:intergenic	55.0%
	ATTCAACGGGGTCTTACCGG+AGG	+	chr8_2:59147949-59147968	None:intergenic	55.0%
	TCACAGCCAGAGAAACCCTC+TGG	-	chr8_2:59147990-59148009	Msa1258050:three_prime_UTR	55.0%
	CCGACGATCAACATTGCCAG+AGG	+	chr8_2:59148009-59148028	None:intergenic	55.0%
	AGGCATATCACGTCTCCTGC+AGG	-	chr8_2:59148740-59148759	Msa1258050:CDS	55.0%
	GGCATATCACGTCTCCTGCA+GGG	-	chr8_2:59148741-59148760	Msa1258050:CDS	55.0%
	AAGCATGACTTCTCCGCCAC+AGG	-	chr8_2:59147908-59147927	Msa1258050:three_prime_UTR	55.0%
	TTTCTCCGATGAGCCTGTGG+CGG	+	chr8_2:59147924-59147943	None:intergenic	55.0%
	ATTCAACGGGGTCTTACCGG+AGG	+	chr8_2:59147949-59147968	None:intergenic	55.0%
	TCACAGCCAGAGAAACCCTC+TGG	-	chr8_2:59147990-59148009	Msa1258050:three_prime_UTR	55.0%
	CCGACGATCAACATTGCCAG+AGG	+	chr8_2:59148009-59148028	None:intergenic	55.0%
	AGGCATATCACGTCTCCTGC+AGG	-	chr8_2:59148740-59148759	Msa1258050:CDS	55.0%
	GGCATATCACGTCTCCTGCA+GGG	-	chr8_2:59148741-59148760	Msa1258050:CDS	55.0%
	CTTCTCCGCCACAGGCTCAT+CGG	-	chr8_2:59147916-59147935	Msa1258050:three_prime_UTR	60.0%
	CTTCTCCGCCACAGGCTCAT+CGG	-	chr8_2:59147916-59147935	Msa1258050:three_prime_UTR	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	59147828	59149075	59147828	ID=Msa1258050;Name=Msa1258050
chr8_2	mRNA	59147828	59149075	59147828	ID=Msa1258050-mRNA-1;Parent=Msa1258050;Name=Msa1258050-mRNA-1;_AED=0.00;_eAED=0.00;_QI=84\|1\|1\|1\|0\|0.5\|2\|339\|174
chr8_2	exon	59147828	59148324	59147828	ID=Msa1258050-mRNA-1:exon:18327;Parent=Msa1258050-mRNA-1
chr8_2	exon	59148625	59149075	59148625	ID=Msa1258050-mRNA-1:exon:18326;Parent=Msa1258050-mRNA-1
chr8_2	five_prime_UTR	59148992	59149075	59148992	ID=Msa1258050-mRNA-1:five_prime_utr;Parent=Msa1258050-mRNA-1
chr8_2	CDS	59148625	59148991	59148625	ID=Msa1258050-mRNA-1:cds;Parent=Msa1258050-mRNA-1
chr8_2	CDS	59148167	59148324	59148167	ID=Msa1258050-mRNA-1:cds;Parent=Msa1258050-mRNA-1
chr8_2	three_prime_UTR	59147828	59148166	59147828	ID=Msa1258050-mRNA-1:three_prime_utr;Parent=Msa1258050-mRNA-1

Gene Sequence

>Msa1258050

ATGACTTCTCCGCCACAGGCTCATCGGAGAAAAACCTCCGGTAAGACCCCGTTGAATTCTTGCCGTAAACTCCATAATTCACAGCCAGAGAAACCCTCTGGCAATGTTGATCGTCGGTTTGTCTCAACTCCTCTGACGCTGAAGATGCAAACTAATGACACTGTTCTTCGGCCATCAAAACTGCTACTGAAGGTGACAATCGAAAACAGCTTGGGCGCAATTCAGATGTTGATGTTGTCTGAGGACACAGTTGAAGATTTGATAAAGGCGGCGTTAGTGTTTTACGAGAAGGATAAGAGGAGGCCAATTTTGAAGAACACTGATCCAAGGTGTTATGATCTTCATTACTCCCAATTCACTTTCCAAAGTTTGAAGCGAGACGAGAAGTTAGTGAGCTTGGAGTCAAGGAATTTCTTTCTCTGCTCAAAATCAAAGCCACCCGTTTCTTCATGCACCATGCAGAATGAGAATGTGGCAATGGATTCTTCATTTCCTTGGATGATTTTAGTCAATTTTCTGCTATAA

Protein sequence

>Msa1258050

MTSPPQAHRRKTSGKTPLNSCRKLHNSQPEKPSGNVDRRFVSTPLTLKMQTNDTVLRPSKLLLKVTIENSLGAIQMLMLSEDTVEDLIKAALVFYEKDKRRPILKNTDPRCYDLHYSQFTFQSLKRDEKLVSLESRNFFLCSKSKPPVSSCTMQNENVAMDSSFPWMILVNFLL*