Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255280 | XP_003629468.2 | 98.309 | 473 | 8 | 0 | 1 | 473 | 1 | 473 | 0.0 | 946 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255280 | sp|Q8L7A0|TAUE3_ARATH | 61.937 | 444 | 152 | 5 | 36 | 468 | 38 | 475 | 6.70e-178 | 509 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0036430 | Msa1255280 | 0.828358 | 9.397955e-55 | -8.615850e-47 |
Msa0036960 | Msa1255280 | 0.809548 | 1.791860e-50 | -8.615850e-47 |
Msa0044100 | Msa1255280 | 0.811700 | 6.141848e-51 | -8.615850e-47 |
Msa0072370 | Msa1255280 | 0.812315 | 4.511113e-51 | -8.615850e-47 |
Msa0084500 | Msa1255280 | 0.803560 | 3.288803e-49 | -8.615850e-47 |
Msa0095540 | Msa1255280 | 0.803990 | 2.677809e-49 | -8.615850e-47 |
Msa0611380 | Msa1255280 | 0.857572 | 1.489757e-62 | -8.615850e-47 |
Msa0618180 | Msa1255280 | 0.832967 | 6.988038e-56 | -8.615850e-47 |
Msa0618220 | Msa1255280 | 0.826134 | 3.205185e-54 | -8.615850e-47 |
Msa0619070 | Msa1255280 | 0.808855 | 2.522886e-50 | -8.615850e-47 |
Msa0619990 | Msa1255280 | 0.827404 | 1.593662e-54 | -8.615850e-47 |
Msa0628640 | Msa1255280 | 0.858782 | 6.505050e-63 | -8.615850e-47 |
Msa0631120 | Msa1255280 | 0.896447 | 3.658663e-76 | -8.615850e-47 |
Msa0650070 | Msa1255280 | 0.825581 | 4.335424e-54 | -8.615850e-47 |
Msa0666030 | Msa1255280 | 0.844554 | 7.036496e-59 | -8.615850e-47 |
Msa0669340 | Msa1255280 | 0.889105 | 3.262696e-73 | -8.615850e-47 |
Msa0684500 | Msa1255280 | 0.841003 | 6.183843e-58 | -8.615850e-47 |
Msa0692060 | Msa1255280 | 0.829127 | 6.125124e-55 | -8.615850e-47 |
Msa0701970 | Msa1255280 | 0.823900 | 1.079547e-53 | -8.615850e-47 |
Msa0706420 | Msa1255280 | 0.810216 | 1.286911e-50 | -8.615850e-47 |
Msa0709500 | Msa1255280 | 0.802695 | 4.965568e-49 | -8.615850e-47 |
Msa0716450 | Msa1255280 | 0.868584 | 5.859076e-66 | -8.615850e-47 |
Msa0717260 | Msa1255280 | 0.875589 | 2.735778e-68 | -8.615850e-47 |
Msa0734230 | Msa1255280 | 0.839200 | 1.827128e-57 | -8.615850e-47 |
Msa0741900 | Msa1255280 | 0.833826 | 4.266767e-56 | -8.615850e-47 |
Msa0758320 | Msa1255280 | 0.881312 | 2.665411e-70 | -8.615850e-47 |
Msa0775440 | Msa1255280 | 0.867707 | 1.122209e-65 | -8.615850e-47 |
Msa0780740 | Msa1255280 | 0.805715 | 1.167823e-49 | -8.615850e-47 |
Msa0787260 | Msa1255280 | 0.817384 | 3.391727e-52 | -8.615850e-47 |
Msa0790850 | Msa1255280 | 0.801192 | 1.010931e-48 | -8.615850e-47 |
Msa0799030 | Msa1255280 | 0.868122 | 8.254906e-66 | -8.615850e-47 |
Msa0799700 | Msa1255280 | 0.851704 | 7.461300e-61 | -8.615850e-47 |
Msa0810020 | Msa1255280 | 0.820923 | 5.306161e-53 | -8.615850e-47 |
Msa0812820 | Msa1255280 | 0.846758 | 1.776073e-59 | -8.615850e-47 |
Msa0822990 | Msa1255280 | 0.829568 | 4.786416e-55 | -8.615850e-47 |
Msa0837440 | Msa1255280 | 0.862921 | 3.596628e-64 | -8.615850e-47 |
Msa0837980 | Msa1255280 | 0.883108 | 5.930104e-71 | -8.615850e-47 |
Msa0130570 | Msa1255280 | 0.828149 | 1.055528e-54 | -8.615850e-47 |
Msa0141100 | Msa1255280 | 0.904683 | 9.502906e-80 | -8.615850e-47 |
Msa0148340 | Msa1255280 | 0.812533 | 4.041527e-51 | -8.615850e-47 |
Msa0153420 | Msa1255280 | 0.825285 | 5.095982e-54 | -8.615850e-47 |
Msa0172350 | Msa1255280 | 0.803218 | 3.871555e-49 | -8.615850e-47 |
Msa0183750 | Msa1255280 | 0.830875 | 2.295227e-55 | -8.615850e-47 |
Msa0188680 | Msa1255280 | -0.801147 | 1.032550e-48 | -8.615850e-47 |
Msa0191040 | Msa1255280 | 0.836741 | 7.835109e-57 | -8.615850e-47 |
Msa0219190 | Msa1255280 | 0.803698 | 3.078391e-49 | -8.615850e-47 |
Msa0220300 | Msa1255280 | 0.840233 | 9.836342e-58 | -8.615850e-47 |
Msa0225600 | Msa1255280 | 0.812517 | 4.074322e-51 | -8.615850e-47 |
Msa0233340 | Msa1255280 | 0.836632 | 8.349892e-57 | -8.615850e-47 |
Msa0236440 | Msa1255280 | 0.812090 | 5.050615e-51 | -8.615850e-47 |
Msa1227950 | Msa1255280 | 0.857192 | 1.929690e-62 | -8.615850e-47 |
Msa1227970 | Msa1255280 | 0.859709 | 3.429480e-63 | -8.615850e-47 |
Msa1254700 | Msa1255280 | 0.823031 | 1.724283e-53 | -8.615850e-47 |
Msa1255040 | Msa1255280 | -0.823560 | 1.296966e-53 | -8.615850e-47 |
Msa1255280 | Msa1258050 | 0.866187 | 3.425482e-65 | -8.615850e-47 |
Msa1255280 | Msa1266960 | 0.883475 | 4.350312e-71 | -8.615850e-47 |
Msa1255280 | Msa1291870 | 0.817801 | 2.730977e-52 | -8.615850e-47 |
Msa1255280 | Msa1308130 | 0.826282 | 2.954745e-54 | -8.615850e-47 |
Msa1255280 | Msa1329920 | 0.809908 | 1.499423e-50 | -8.615850e-47 |
Msa1255280 | Msa1331910 | 0.801435 | 9.015601e-49 | -8.615850e-47 |
Msa1255280 | Msa1339940 | 0.827485 | 1.523994e-54 | -8.615850e-47 |
Msa1255280 | Msa1353060 | 0.802563 | 5.285996e-49 | -8.615850e-47 |
Msa1255280 | Msa1369700 | 0.820180 | 7.861461e-53 | -8.615850e-47 |
Msa1255280 | Msa1370090 | 0.809499 | 1.836039e-50 | -8.615850e-47 |
Msa1255280 | Msa1395870 | 0.865435 | 5.917437e-65 | -8.615850e-47 |
Msa1255280 | Msa1397250 | 0.816066 | 6.698081e-52 | -8.615850e-47 |
Msa1255280 | Msa1399560 | 0.883875 | 3.098867e-71 | -8.615850e-47 |
Msa1255280 | Msa1401150 | 0.831069 | 2.056871e-55 | -8.615850e-47 |
Msa1255280 | Msa1437190 | 0.823086 | 1.673508e-53 | -8.615850e-47 |
Msa1255280 | Msa1440340 | 0.800668 | 1.293756e-48 | -8.615850e-47 |
Msa1255280 | Msa1443840 | 0.933479 | 1.761552e-95 | -8.615850e-47 |
Msa1255280 | Msa1449730 | 0.820280 | 7.454087e-53 | -8.615850e-47 |
Msa1255280 | Msa1452060 | 0.825308 | 5.032048e-54 | -8.615850e-47 |
Msa1255280 | Msa1460380 | 0.834609 | 2.714882e-56 | -8.615850e-47 |
Msa0374850 | Msa1255280 | 0.905987 | 2.399026e-80 | -8.615850e-47 |
Msa0375090 | Msa1255280 | 0.897001 | 2.145050e-76 | -8.615850e-47 |
Msa0385670 | Msa1255280 | 0.837458 | 5.136838e-57 | -8.615850e-47 |
Msa0419820 | Msa1255280 | 0.822477 | 2.320317e-53 | -8.615850e-47 |
Msa0423360 | Msa1255280 | -0.804079 | 2.566041e-49 | -8.615850e-47 |
Msa0435670 | Msa1255280 | 0.813101 | 3.035342e-51 | -8.615850e-47 |
Msa0464540 | Msa1255280 | 0.803950 | 2.728959e-49 | -8.615850e-47 |
Msa0470340 | Msa1255280 | 0.880490 | 5.259880e-70 | -8.615850e-47 |
Msa0470860 | Msa1255280 | 0.847777 | 9.330816e-60 | -8.615850e-47 |
Msa0479680 | Msa1255280 | 0.817334 | 3.480521e-52 | -8.615850e-47 |
Msa0479700 | Msa1255280 | 0.810903 | 9.143801e-51 | -8.615850e-47 |
Msa0480950 | Msa1255280 | 0.892753 | 1.186800e-74 | -8.615850e-47 |
Msa0481110 | Msa1255280 | 0.831033 | 2.099538e-55 | -8.615850e-47 |
Msa0981010 | Msa1255280 | 0.807234 | 5.584343e-50 | -8.615850e-47 |
Msa1002620 | Msa1255280 | 0.879084 | 1.662461e-69 | -8.615850e-47 |
Msa1033560 | Msa1255280 | 0.839960 | 1.158729e-57 | -8.615850e-47 |
Msa1073340 | Msa1255280 | 0.810291 | 1.240120e-50 | -8.615850e-47 |
Msa1073350 | Msa1255280 | 0.804189 | 2.434001e-49 | -8.615850e-47 |
Msa1083150 | Msa1255280 | 0.800736 | 1.253267e-48 | -8.615850e-47 |
Msa0251240 | Msa1255280 | 0.814557 | 1.449789e-51 | -8.615850e-47 |
Msa0266450 | Msa1255280 | 0.825196 | 5.347759e-54 | -8.615850e-47 |
Msa0270220 | Msa1255280 | -0.801413 | 9.111734e-49 | -8.615850e-47 |
Msa0307830 | Msa1255280 | -0.801460 | 8.909662e-49 | -8.615850e-47 |
Msa0309350 | Msa1255280 | 0.803422 | 3.513253e-49 | -8.615850e-47 |
Msa0311690 | Msa1255280 | 0.832575 | 8.743155e-56 | -8.615850e-47 |
Msa0315240 | Msa1255280 | 0.800335 | 1.512489e-48 | -8.615850e-47 |
Msa0315250 | Msa1255280 | 0.841165 | 5.606492e-58 | -8.615850e-47 |
Msa0334500 | Msa1255280 | 0.807583 | 4.707866e-50 | -8.615850e-47 |
Msa1113850 | Msa1255280 | 0.846688 | 1.856244e-59 | -8.615850e-47 |
Msa1160400 | Msa1255280 | 0.833428 | 5.363334e-56 | -8.615850e-47 |
Msa1171360 | Msa1255280 | 0.803349 | 3.637121e-49 | -8.615850e-47 |
Msa1190120 | Msa1255280 | 0.857292 | 1.803324e-62 | -8.615850e-47 |
Msa1197590 | Msa1255280 | 0.816601 | 5.085153e-52 | -8.615850e-47 |
Msa1203000 | Msa1255280 | 0.968928 | 2.221885e-129 | -8.615850e-47 |
Msa1211550 | Msa1255280 | 0.840662 | 7.597342e-58 | -8.615850e-47 |
Msa1217940 | Msa1255280 | 0.838241 | 3.231750e-57 | -8.615850e-47 |
Msa1218480 | Msa1255280 | 0.803895 | 2.801811e-49 | -8.615850e-47 |
Msa1219260 | Msa1255280 | 0.885104 | 1.084067e-71 | -8.615850e-47 |
Msa0503580 | Msa1255280 | 0.808450 | 3.078892e-50 | -8.615850e-47 |
Msa0531430 | Msa1255280 | 0.881244 | 2.819752e-70 | -8.615850e-47 |
Msa0534570 | Msa1255280 | 0.832084 | 1.156889e-55 | -8.615850e-47 |
Msa0534590 | Msa1255280 | 0.880970 | 3.537247e-70 | -8.615850e-47 |
Msa0548620 | Msa1255280 | 0.833818 | 4.286392e-56 | -8.615850e-47 |
Msa0565600 | Msa1255280 | 0.812722 | 3.673919e-51 | -8.615850e-47 |
Msa0568820 | Msa1255280 | 0.800486 | 1.408876e-48 | -8.615850e-47 |
Msa0590800 | Msa1255280 | 0.861320 | 1.114287e-63 | -8.615850e-47 |
Msa0853320 | Msa1255280 | 0.888072 | 8.160732e-73 | -8.615850e-47 |
Msa0862100 | Msa1255280 | 0.823727 | 1.185072e-53 | -8.615850e-47 |
Msa0880710 | Msa1255280 | 0.800268 | 1.561033e-48 | -8.615850e-47 |
Msa0966420 | Msa1255280 | 0.818676 | 1.731071e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255280 | MtrunA17_Chr8g0373471 | 98.309 | 473 | 8 | 0 | 1 | 473 | 1 | 473 | 0.0 | 946 |
Msa1255280 | MtrunA17_Chr5g0403901 | 73.319 | 461 | 103 | 4 | 19 | 467 | 18 | 470 | 0.0 | 593 |
Msa1255280 | MtrunA17_Chr3g0139541 | 64.871 | 427 | 133 | 5 | 49 | 468 | 53 | 469 | 0.0 | 517 |
Msa1255280 | MtrunA17_Chr8g0380211 | 62.319 | 414 | 151 | 3 | 62 | 470 | 67 | 480 | 1.21e-156 | 453 |
Msa1255280 | MtrunA17_Chr1g0157751 | 50.547 | 457 | 210 | 5 | 20 | 466 | 6 | 456 | 1.39e-143 | 419 |
Msa1255280 | MtrunA17_Chr7g0265481 | 51.816 | 413 | 185 | 3 | 63 | 465 | 51 | 459 | 2.76e-125 | 372 |
Msa1255280 | MtrunA17_Chr8g0380191 | 57.349 | 347 | 107 | 3 | 122 | 467 | 10 | 316 | 1.79e-124 | 365 |
Msa1255280 | MtrunA17_Chr1g0179621 | 47.484 | 457 | 229 | 4 | 17 | 465 | 9 | 462 | 2.98e-120 | 359 |
Msa1255280 | MtrunA17_Chr2g0280401 | 28.982 | 383 | 252 | 7 | 100 | 465 | 87 | 466 | 4.25e-42 | 155 |
Msa1255280 | MtrunA17_Chr3g0139621 | 48.305 | 118 | 38 | 2 | 301 | 395 | 27 | 144 | 1.09e-17 | 80.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255280 | AT2G25737.1 | 61.937 | 444 | 152 | 5 | 36 | 468 | 38 | 475 | 6.81e-179 | 509 |
Msa1255280 | AT2G25737.2 | 60.615 | 325 | 114 | 4 | 48 | 364 | 53 | 371 | 4.51e-122 | 361 |
Msa1255280 | AT2G36630.1 | 47.962 | 417 | 207 | 3 | 57 | 465 | 42 | 456 | 4.21e-118 | 354 |
Msa1255280 | AT1G11540.2 | 32.274 | 409 | 244 | 7 | 76 | 465 | 56 | 450 | 6.56e-47 | 169 |
Msa1255280 | AT1G11540.1 | 31.759 | 381 | 227 | 7 | 104 | 465 | 1 | 367 | 3.16e-46 | 164 |
Msa1255280 | AT1G61740.1 | 30.000 | 420 | 261 | 7 | 67 | 465 | 51 | 458 | 2.15e-44 | 162 |
Msa1255280 | AT4G21250.1 | 31.690 | 426 | 236 | 9 | 68 | 465 | 51 | 449 | 1.22e-38 | 146 |
Msa1255280 | AT4G21260.1 | 27.500 | 400 | 227 | 10 | 68 | 465 | 55 | 393 | 1.56e-28 | 117 |
Find 115 sgRNAs with CRISPR-Local
Find 257 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGGAGGTGGCTTCATTT+TGG | 0.204042 | 8_2:-53744018 | Msa1255280:CDS |
TTCAAAATGCTGGTTATTCT+AGG | 0.226848 | 8_2:+53747231 | None:intergenic |
GATGGAAAATGAAGAATATA+TGG | 0.247767 | 8_2:-53743177 | Msa1255280:CDS |
TATCAGTTCTTATGTATGTT+TGG | 0.264788 | 8_2:-53745039 | Msa1255280:CDS |
AAAGGAAACAATTATGAAAA+AGG | 0.272024 | 8_2:-53745732 | Msa1255280:intron |
GTTATTGCAGGTATGATTAC+AGG | 0.290362 | 8_2:-53746368 | Msa1255280:intron |
ATCAGTTCTTATGTATGTTT+GGG | 0.291680 | 8_2:-53745038 | Msa1255280:CDS |
TTGAAATGGGGTTTGGAAAC+AGG | 0.308611 | 8_2:-53747330 | None:intergenic |
TGAACGGTTTGAAACAAAAT+AGG | 0.309051 | 8_2:+53747155 | None:intergenic |
ATATATTGCACTTCAAACTA+TGG | 0.315520 | 8_2:+53742877 | None:intergenic |
AGAAAGATAATTGCTATCTT+TGG | 0.319840 | 8_2:-53743446 | Msa1255280:CDS |
AGTGTAGGAGGGGTAGGAGG+TGG | 0.323655 | 8_2:-53746740 | Msa1255280:CDS |
AGGCATCGATACATGGAAAA+AGG | 0.325374 | 8_2:-53745750 | Msa1255280:CDS |
GCCTTTGACTAAAGCTTTAG+TGG | 0.329119 | 8_2:+53745769 | None:intergenic |
CCTATGCTCACTTTGATCAT+TGG | 0.330446 | 8_2:-53746704 | Msa1255280:CDS |
TAAACGGTATGTTACATAAT+TGG | 0.337245 | 8_2:+53742903 | None:intergenic |
TTGGCTTCTTAATTCCTTGC+AGG | 0.341432 | 8_2:-53744861 | Msa1255280:intron |
TAGAACCTGATTCCAACATT+TGG | 0.359466 | 8_2:+53745439 | None:intergenic |
GAGAAGCATCAACAATTATA+TGG | 0.361224 | 8_2:-53747095 | Msa1255280:CDS |
ATTAAGAAGCCAATACTCTA+TGG | 0.361665 | 8_2:+53744871 | None:intergenic |
AGTTCCTTTGCATAAGCATA+TGG | 0.364228 | 8_2:+53744145 | None:intergenic |
TCTCATTGTTCAAATTCTTA+AGG | 0.370958 | 8_2:-53745008 | Msa1255280:intron |
TGTTTCTTACCATAGGGTAC+TGG | 0.386212 | 8_2:+53743630 | None:intergenic |
ATCACAGGTGGGGTGGGAAT+AGG | 0.390427 | 8_2:-53743215 | Msa1255280:intron |
AGAACCTGATTCCAACATTT+GGG | 0.395873 | 8_2:+53745440 | None:intergenic |
GAATAGAATGATAAGCAAAA+TGG | 0.396738 | 8_2:+53746184 | None:intergenic |
GTAGGAGGGGTAGGAGGTGG+AGG | 0.399768 | 8_2:-53746737 | Msa1255280:CDS |
GTTGAGCAGGAAATGAAGTT+TGG | 0.401432 | 8_2:-53746815 | Msa1255280:intron |
TTGGGAAGTGTAGGAGGGGT+AGG | 0.403096 | 8_2:-53746746 | Msa1255280:CDS |
GTTAGTGGTTTGCTTGGTCT+AGG | 0.405722 | 8_2:-53744035 | Msa1255280:CDS |
TTCGTCTTCGAAAACTCTTT+CGG | 0.407295 | 8_2:+53747029 | None:intergenic |
GGAAGTGTAGGAGGGGTAGG+AGG | 0.412992 | 8_2:-53746743 | Msa1255280:CDS |
TTTGTGAGCGCAATCAGTTT+AGG | 0.416463 | 8_2:-53743383 | Msa1255280:intron |
GAGAGGGCTGTAGAAGACTT+TGG | 0.417036 | 8_2:+53746674 | None:intergenic |
TTAATGTCATGTTTGCTGAT+TGG | 0.426685 | 8_2:-53746214 | Msa1255280:CDS |
GAACTTTCAGGAAGCCTTTG+AGG | 0.428813 | 8_2:-53745469 | Msa1255280:intron |
AGTCTTCATATGAACGTGTT+TGG | 0.432389 | 8_2:-53746954 | Msa1255280:CDS |
AGTGTAACAGAAATTGCAAT+AGG | 0.433950 | 8_2:+53744176 | None:intergenic |
AAACTTGTTCCATAGAGTAT+TGG | 0.436863 | 8_2:-53744880 | Msa1255280:CDS |
ATAATAGCTGGTATGGTTAG+TGG | 0.442928 | 8_2:-53744050 | Msa1255280:CDS |
AGGCAACATGGTTGAGAAGA+TGG | 0.444124 | 8_2:-53743195 | Msa1255280:CDS |
CTTCAAACTATGGTCATAAA+CGG | 0.445809 | 8_2:+53742887 | None:intergenic |
ATGGAAAATGAAGAATATAT+GGG | 0.453528 | 8_2:-53743176 | Msa1255280:CDS |
CTTTACTTGACAACATTCAC+TGG | 0.454961 | 8_2:-53745069 | Msa1255280:CDS |
GCAGCCCAAATGTTGGAATC+AGG | 0.455292 | 8_2:-53745444 | Msa1255280:CDS |
AGCAGGAAATGAAGTTTGGT+TGG | 0.456534 | 8_2:-53746811 | Msa1255280:intron |
GCAACCATAGCTGCATTAAC+CGG | 0.462747 | 8_2:-53743482 | Msa1255280:CDS |
CAGTGAATGTTGTCAAGTAA+AGG | 0.464845 | 8_2:+53745070 | None:intergenic |
GGTTTGCTTGGTCTAGGAGG+TGG | 0.469170 | 8_2:-53744029 | Msa1255280:CDS |
CAATTATATGGCTAGTTTCG+TGG | 0.472977 | 8_2:-53747083 | Msa1255280:CDS |
ATTGTCGTAGGTTCTATTGT+TGG | 0.473965 | 8_2:-53746785 | Msa1255280:CDS |
AGTGAATGTTGTCAAGTAAA+GGG | 0.481684 | 8_2:+53745071 | None:intergenic |
GGAATTGGGAATTCCTCCTC+AGG | 0.483527 | 8_2:-53743982 | Msa1255280:intron |
GGTATGATTACAGGAGCAGC+TGG | 0.484398 | 8_2:-53746359 | Msa1255280:CDS |
CTGTGGAATAATAGCTGGTA+TGG | 0.485082 | 8_2:-53744057 | Msa1255280:CDS |
AACTAGAGTAATTGCATCAA+GGG | 0.487063 | 8_2:-53744126 | Msa1255280:CDS |
TGTTTCAAACCGTTCATACA+TGG | 0.488172 | 8_2:-53747148 | Msa1255280:exon |
TTGCTTATCATTCTATTCAT+CGG | 0.491065 | 8_2:-53746179 | Msa1255280:intron |
TGCTTCTGTGGAATAATAGC+TGG | 0.491856 | 8_2:-53744062 | Msa1255280:CDS |
TTGGCTATCACAGGTGGGGT+GGG | 0.492087 | 8_2:-53743221 | Msa1255280:intron |
TTTGGCTATCACAGGTGGGG+TGG | 0.493274 | 8_2:-53743222 | Msa1255280:intron |
TCTTCATCTTGTAGATCAGC+TGG | 0.493935 | 8_2:+53745192 | None:intergenic |
CTTTCTCACCACATGTTGGC+CGG | 0.494055 | 8_2:+53743463 | None:intergenic |
GGTATGGTTAGTGGTTTGCT+TGG | 0.496243 | 8_2:-53744041 | Msa1255280:CDS |
AGTTCTTATGTATGTTTGGG+TGG | 0.502161 | 8_2:-53745035 | Msa1255280:CDS |
GCAAGATCATAATCTATAAG+TGG | 0.507543 | 8_2:+53746287 | None:intergenic |
GCAGATTGTGTAACAATGAC+TGG | 0.507617 | 8_2:-53743014 | Msa1255280:three_prime_UTR |
CAATGATCAAAGTGAGCATA+GGG | 0.509691 | 8_2:+53746705 | None:intergenic |
GAACTAGAGTAATTGCATCA+AGG | 0.511872 | 8_2:-53744127 | Msa1255280:CDS |
ATCTGTCTTTACTGCTTCTG+TGG | 0.513821 | 8_2:-53744074 | Msa1255280:CDS |
CATTTGGGCTGCTTCCTCAA+AGG | 0.514918 | 8_2:+53745455 | None:intergenic |
GCAGCATTGGGAAGTGTAGG+AGG | 0.516125 | 8_2:-53746752 | Msa1255280:CDS |
GGAGCAGCATTGGGAAGTGT+AGG | 0.522662 | 8_2:-53746755 | Msa1255280:CDS |
CAAGGGGAAAGGAAATCACT+TGG | 0.523181 | 8_2:-53744109 | Msa1255280:CDS |
GTTTCTTACCATAGGGTACT+GGG | 0.530425 | 8_2:+53743631 | None:intergenic |
TAGTCAAAGGCATCGATACA+TGG | 0.531192 | 8_2:-53745757 | Msa1255280:CDS |
AGAAGTTTCTTCTGGTACAG+TGG | 0.532914 | 8_2:-53746979 | Msa1255280:CDS |
GATCGCTTCCCAGTACCCTA+TGG | 0.534547 | 8_2:-53743639 | Msa1255280:intron |
CCAATGATCAAAGTGAGCAT+AGG | 0.539472 | 8_2:+53746704 | None:intergenic |
CTTCGAAAGCCATGTATGAA+CGG | 0.542487 | 8_2:+53747139 | None:intergenic |
TGTCATGTTTGCTGATTGGA+TGG | 0.542804 | 8_2:-53746210 | Msa1255280:CDS |
TTTCTCTTCCTCCATGTCAG+TGG | 0.546653 | 8_2:-53743679 | Msa1255280:CDS |
CATTGTACATGAGAATGAGT+AGG | 0.553335 | 8_2:+53742848 | None:intergenic |
TAAGTGGCATGTCTAGTGTT+GGG | 0.556589 | 8_2:+53746303 | None:intergenic |
AATATGTAGAAAATTTAGAA+AGG | 0.559766 | 8_2:+53743049 | None:intergenic |
AGTGGTTTGCTTGGTCTAGG+AGG | 0.560215 | 8_2:-53744032 | Msa1255280:CDS |
AGCTGATCTACAAGATGAAG+AGG | 0.560678 | 8_2:-53745190 | Msa1255280:intron |
CAGCATTGGGAAGTGTAGGA+GGG | 0.565603 | 8_2:-53746751 | Msa1255280:CDS |
TCCACTAAAGCTTTAGTCAA+AGG | 0.565804 | 8_2:-53745770 | Msa1255280:CDS |
ATATATAATATTTACCTGCA+AGG | 0.570892 | 8_2:+53744847 | None:intergenic |
CTAATTCCTAGCATTAGCAT+AGG | 0.571256 | 8_2:+53746251 | None:intergenic |
TGAGGAAGCAGCCCAAATGT+TGG | 0.572269 | 8_2:-53745451 | Msa1255280:CDS |
ACTTGACAACATTCACTGGA+AGG | 0.572833 | 8_2:-53745065 | Msa1255280:CDS |
AGTAATTGCATCAAGGGGAA+AGG | 0.574209 | 8_2:-53744120 | Msa1255280:CDS |
TGCATTAACCGGCCAACATG+TGG | 0.574265 | 8_2:-53743471 | Msa1255280:CDS |
ATAAGTGGCATGTCTAGTGT+TGG | 0.578798 | 8_2:+53746302 | None:intergenic |
GAAGCCATATGCTTATGCAA+AGG | 0.580245 | 8_2:-53744149 | Msa1255280:CDS |
AGCATTGGGAAGTGTAGGAG+GGG | 0.588416 | 8_2:-53746750 | Msa1255280:CDS |
TTGGCCGGTTAATGCAGCTA+TGG | 0.591965 | 8_2:+53743478 | None:intergenic |
TTTCAGCCTATGCTAATGCT+AGG | 0.600746 | 8_2:-53746257 | Msa1255280:CDS |
CAACCGTGTATTACAATCTG+AGG | 0.602134 | 8_2:-53746334 | Msa1255280:CDS |
TTTGGTTGGAGAATTGTCGT+AGG | 0.615183 | 8_2:-53746797 | Msa1255280:CDS |
TGGAAAATGAAGAATATATG+GGG | 0.615202 | 8_2:-53743175 | Msa1255280:CDS |
AATATACTAACACTTAGAGA+GGG | 0.620159 | 8_2:+53746658 | None:intergenic |
TTATCTTTCTCACCACATGT+TGG | 0.621904 | 8_2:+53743459 | None:intergenic |
GAATGAGTTTGTACCTGAGG+AGG | 0.622331 | 8_2:+53743969 | None:intergenic |
AAATATACTAACACTTAGAG+AGG | 0.625688 | 8_2:+53746657 | None:intergenic |
ATAATATTGTACCACTGACA+TGG | 0.629151 | 8_2:+53743668 | None:intergenic |
CTAATGCTAGGAATTAGCAT+TGG | 0.634658 | 8_2:-53746245 | Msa1255280:CDS |
ACTAGAGTAATTGCATCAAG+GGG | 0.654446 | 8_2:-53744125 | Msa1255280:CDS |
TTTGACAATCTCTGCCACCA+TGG | 0.655124 | 8_2:-53743152 | Msa1255280:CDS |
TGGGGTGGGAATAGGCAACA+TGG | 0.656926 | 8_2:-53743207 | Msa1255280:CDS |
GTATGATTACAGGAGCAGCT+GGG | 0.686475 | 8_2:-53746358 | Msa1255280:CDS |
AAGCCTCAGATTGTAATACA+CGG | 0.701059 | 8_2:+53746331 | None:intergenic |
ATATTGTACCACTGACATGG+AGG | 0.737557 | 8_2:+53743671 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGGTAAATATTATATATATT+TGG | - | chr8_2:53745326-53745345 | Msa1255280:intron | 10.0% |
!! | TAAATCCTTAAAAAAATTTA+TGG | - | chr8_2:53745869-53745888 | Msa1255280:intron | 10.0% |
!!! | AAAAACCATAAATTTTTTTA+AGG | + | chr8_2:53745877-53745896 | None:intergenic | 10.0% |
!!! | TTATTGTATTTTGTTGATTT+CGG | - | chr8_2:53744089-53744108 | Msa1255280:CDS | 15.0% |
!! | ATAGTTCTTAATTTAACATT+TGG | - | chr8_2:53744859-53744878 | Msa1255280:intron | 15.0% |
!!! | TAATTTATAACTTGCTTTTT+TGG | - | chr8_2:53745734-53745753 | Msa1255280:CDS | 15.0% |
!! | ATCTTAAAAAAAAACTGAAA+GGG | + | chr8_2:53746404-53746423 | None:intergenic | 15.0% |
!! | TATCTTAAAAAAAAACTGAA+AGG | + | chr8_2:53746405-53746424 | None:intergenic | 15.0% |
!! | TTAAACTTTCTATCATAAAT+GGG | + | chr8_2:53746867-53746886 | None:intergenic | 15.0% |
!!! | TAAATTTTATCCTTACTTTA+TGG | + | chr8_2:53746890-53746909 | None:intergenic | 15.0% |
!!! | AGTAAGGATAAAATTTATTT+TGG | - | chr8_2:53746893-53746912 | Msa1255280:intron | 15.0% |
!! | AATATGTAGAAAATTTAGAA+AGG | + | chr8_2:53747121-53747140 | None:intergenic | 15.0% |
!!! | ACATAAAAACAATTTTAAGA+TGG | + | chr8_2:53747192-53747211 | None:intergenic | 15.0% |
!! | AATAACTACATAATGCAATA+TGG | + | chr8_2:53744074-53744093 | None:intergenic | 20.0% |
!! | GTTCTTGAAAAAATTGAATT+TGG | + | chr8_2:53744340-53744359 | None:intergenic | 20.0% |
!! | AAAGGAAACAATTATGAAAA+AGG | - | chr8_2:53744435-53744454 | Msa1255280:intron | 20.0% |
!! | TTAATTAACACAAATAAGAG+AGG | - | chr8_2:53744835-53744854 | Msa1255280:intron | 20.0% |
!! | TTCTTAAGGTAGTTAATATT+TGG | - | chr8_2:53745173-53745192 | Msa1255280:intron | 20.0% |
!! | ATATATAATATTTACCTGCA+AGG | + | chr8_2:53745323-53745342 | None:intergenic | 20.0% |
!!! | TACTACTATATCACAATTTT+TGG | + | chr8_2:53745438-53745457 | None:intergenic | 20.0% |
!! | TGATATAGTAGTATACATAA+AGG | - | chr8_2:53745445-53745464 | Msa1255280:CDS | 20.0% |
!!! | AATTAATTGTGATTTGTTGA+CGG | + | chr8_2:53745543-53745562 | None:intergenic | 20.0% |
!! | TTAATAAGAGAAATGTTAAC+CGG | - | chr8_2:53745601-53745620 | Msa1255280:intron | 20.0% |
!!! | CCTTTTTTAGTATTCTTAAT+CGG | + | chr8_2:53745639-53745658 | None:intergenic | 20.0% |
!! | ACTAAAATACATATCTTGAT+TGG | - | chr8_2:53745899-53745918 | Msa1255280:intron | 20.0% |
!!! | TTGATGAATATTTTTGAATG+TGG | - | chr8_2:53746430-53746449 | Msa1255280:intron | 20.0% |
!!! | ATATATTGTTTCTTACCATA+GGG | + | chr8_2:53746546-53746565 | None:intergenic | 20.0% |
!!! | TATATATTGTTTCTTACCAT+AGG | + | chr8_2:53746547-53746566 | None:intergenic | 20.0% |
!! | GTTAAACTTTCTATCATAAA+TGG | + | chr8_2:53746868-53746887 | None:intergenic | 20.0% |
!! | ATGGAAAATGAAGAATATAT+GGG | - | chr8_2:53746991-53747010 | Msa1255280:CDS | 20.0% |
!!! | TGTTTTTATGTGTTTTTGTT+TGG | - | chr8_2:53747201-53747220 | Msa1255280:five_prime_UTR | 20.0% |
!! | TTTTTCATGACAACTATTTC+TGG | + | chr8_2:53743167-53743186 | None:intergenic | 25.0% |
! | TGAAAAAAAGAAGTTTCTTC+TGG | - | chr8_2:53743180-53743199 | Msa1255280:CDS | 25.0% |
! | TTGACATGATGTTATGAAAT+TGG | - | chr8_2:53743306-53743325 | Msa1255280:intron | 25.0% |
! | AATATACTAACACTTAGAGA+GGG | + | chr8_2:53743512-53743531 | None:intergenic | 25.0% |
! | AAATATACTAACACTTAGAG+AGG | + | chr8_2:53743513-53743532 | None:intergenic | 25.0% |
!! | ACTATTTTGTATGCGAAAAA+TGG | - | chr8_2:53743611-53743630 | Msa1255280:intron | 25.0% |
! | AGAACTTTCGAAAATGAATT+GGG | + | chr8_2:53743754-53743773 | None:intergenic | 25.0% |
! | AAGAACTTTCGAAAATGAAT+TGG | + | chr8_2:53743755-53743774 | None:intergenic | 25.0% |
! | GAATAGAATGATAAGCAAAA+TGG | + | chr8_2:53743986-53744005 | None:intergenic | 25.0% |
! | TTGCTTATCATTCTATTCAT+CGG | - | chr8_2:53743988-53744007 | Msa1255280:CDS | 25.0% |
! | TACTCTTACTATAAAGTAGA+AGG | + | chr8_2:53744668-53744687 | None:intergenic | 25.0% |
! | TATCAGTTCTTATGTATGTT+TGG | - | chr8_2:53745128-53745147 | Msa1255280:intron | 25.0% |
! | ATCAGTTCTTATGTATGTTT+GGG | - | chr8_2:53745129-53745148 | Msa1255280:intron | 25.0% |
! | TCTCATTGTTCAAATTCTTA+AGG | - | chr8_2:53745159-53745178 | Msa1255280:intron | 25.0% |
! | AGTTGTATAACTTCATAGAT+TGG | - | chr8_2:53745387-53745406 | Msa1255280:intron | 25.0% |
!!! | ACAATTTTTGGTCTTTTAAC+AGG | + | chr8_2:53745426-53745445 | None:intergenic | 25.0% |
! | TAATACAAATGTTCCTATGT+AGG | + | chr8_2:53745476-53745495 | None:intergenic | 25.0% |
!!! | GGTGTAAATTTTTTTACATC+AGG | + | chr8_2:53745522-53745541 | None:intergenic | 25.0% |
! | CCGATTAAGAATACTAAAAA+AGG | - | chr8_2:53745636-53745655 | Msa1255280:intron | 25.0% |
!!! | CATAATACTATTTCTATGCA+AGG | - | chr8_2:53745928-53745947 | Msa1255280:intron | 25.0% |
!!! | GTGTGCTATTTATCAATTTA+AGG | - | chr8_2:53745966-53745985 | Msa1255280:intron | 25.0% |
! | CTCAATCGAATATATTAATG+AGG | - | chr8_2:53746269-53746288 | Msa1255280:CDS | 25.0% |
!!! | ATTATTTTACAACTGTTTCG+AGG | + | chr8_2:53746352-53746371 | None:intergenic | 25.0% |
!!! | TGAATATTTTTGAATGTGGT+AGG | - | chr8_2:53746434-53746453 | Msa1255280:intron | 25.0% |
! | GAATGTAGATATGATGATAT+TGG | - | chr8_2:53746570-53746589 | Msa1255280:intron | 25.0% |
! | AGAAAGATAATTGCTATCTT+TGG | - | chr8_2:53746721-53746740 | Msa1255280:CDS | 25.0% |
! | GAAAGTTTAACCATAAAGTA+AGG | - | chr8_2:53746877-53746896 | Msa1255280:intron | 25.0% |
!! | TAGTAACAATGTCTCATTTT+TGG | - | chr8_2:53746927-53746946 | Msa1255280:intron | 25.0% |
! | GATGGAAAATGAAGAATATA+TGG | - | chr8_2:53746990-53747009 | Msa1255280:CDS | 25.0% |
! | TGGAAAATGAAGAATATATG+GGG | - | chr8_2:53746992-53747011 | Msa1255280:CDS | 25.0% |
! | TAAACGGTATGTTACATAAT+TGG | + | chr8_2:53747267-53747286 | None:intergenic | 25.0% |
! | ATATATTGCACTTCAAACTA+TGG | + | chr8_2:53747293-53747312 | None:intergenic | 25.0% |
! | TTCAAAATGCTGGTTATTCT+AGG | + | chr8_2:53742939-53742958 | None:intergenic | 30.0% |
!!! | CTACTACTTTTTCAAAATGC+TGG | + | chr8_2:53742949-53742968 | None:intergenic | 30.0% |
! | TGAACGGTTTGAAACAAAAT+AGG | + | chr8_2:53743015-53743034 | None:intergenic | 30.0% |
!! | GAGAAGCATCAACAATTATA+TGG | - | chr8_2:53743072-53743091 | Msa1255280:three_prime_UTR | 30.0% |
! | AAAGTGTTTGATAAACTCAC+AGG | + | chr8_2:53743239-53743258 | None:intergenic | 30.0% |
!!! | GGTTCTATTGTTGGATTTTT+TGG | - | chr8_2:53743391-53743410 | Msa1255280:CDS | 30.0% |
CATGTTAGATATTCGATGTT+TGG | - | chr8_2:53743553-53743572 | Msa1255280:intron | 30.0% | |
GAAAGTTCTTTCAAATACTC+TGG | - | chr8_2:53743765-53743784 | Msa1255280:intron | 30.0% | |
GCAAGATCATAATCTATAAG+TGG | + | chr8_2:53743883-53743902 | None:intergenic | 30.0% | |
! | TTAATGTCATGTTTGCTGAT+TGG | - | chr8_2:53743953-53743972 | Msa1255280:intron | 30.0% |
AACTACATAATGCAATATGG+TGG | + | chr8_2:53744071-53744090 | None:intergenic | 30.0% | |
AAATCTAGACAGTTTGATGT+CGG | - | chr8_2:53744242-53744261 | Msa1255280:intron | 30.0% | |
!! | TAGATTTTAACGCATATAGG+TGG | + | chr8_2:53744276-53744295 | None:intergenic | 30.0% |
!! | TGCTAGATTTTAACGCATAT+AGG | + | chr8_2:53744279-53744298 | None:intergenic | 30.0% |
!! | AGGTAAACTTATAGCTTGTT+TGG | - | chr8_2:53744455-53744474 | Msa1255280:intron | 30.0% |
! | ATAGTAGCTTTTCCAAATCA+CGG | + | chr8_2:53744526-53744545 | None:intergenic | 30.0% |
ATATGTAGCTTCACTGTAAA+CGG | - | chr8_2:53744544-53744563 | Msa1255280:intron | 30.0% | |
TAACTATATAAGCCTGTGTT+TGG | + | chr8_2:53744616-53744635 | None:intergenic | 30.0% | |
TGTAATAACTGGAAGTTTGT+AGG | + | chr8_2:53744770-53744789 | None:intergenic | 30.0% | |
TTCCAGTTATTACATGTAGA+TGG | - | chr8_2:53744776-53744795 | Msa1255280:intron | 30.0% | |
!! | TTCAGAAGCATCTGATATAA+GGG | + | chr8_2:53744937-53744956 | None:intergenic | 30.0% |
TGAAGAGGTAATTATTTCCA+AGG | - | chr8_2:53744992-53745011 | Msa1255280:intron | 30.0% | |
GAAGAGGTAATTATTTCCAA+GGG | - | chr8_2:53744993-53745012 | Msa1255280:intron | 30.0% | |
ACTCTCTATAAAGAATGATC+TGG | + | chr8_2:53745023-53745042 | None:intergenic | 30.0% | |
TCTTTATAGAGAGTTCATTG+AGG | - | chr8_2:53745029-53745048 | Msa1255280:CDS | 30.0% | |
TATGTTAAATTCTTGTGTGC+AGG | - | chr8_2:53745072-53745091 | Msa1255280:CDS | 30.0% | |
AGTGAATGTTGTCAAGTAAA+GGG | + | chr8_2:53745099-53745118 | None:intergenic | 30.0% | |
! | AAACTTGTTCCATAGAGTAT+TGG | - | chr8_2:53745287-53745306 | Msa1255280:intron | 30.0% |
ATTAAGAAGCCAATACTCTA+TGG | + | chr8_2:53745299-53745318 | None:intergenic | 30.0% | |
CATAAAGGTTTATCCTACAT+AGG | - | chr8_2:53745460-53745479 | Msa1255280:CDS | 30.0% | |
!! | TAAAAAAGTGTCATGCTAAC+CGG | + | chr8_2:53745785-53745804 | None:intergenic | 30.0% |
AGTGTAACAGAAATTGCAAT+AGG | + | chr8_2:53745994-53746013 | None:intergenic | 30.0% | |
AACTAGAGTAATTGCATCAA+GGG | - | chr8_2:53746041-53746060 | Msa1255280:intron | 30.0% | |
ATTCCCAATTCCAAAAACAA+TGG | + | chr8_2:53746177-53746196 | None:intergenic | 30.0% | |
CGAATATATTAATGAGGTCT+CGG | - | chr8_2:53746275-53746294 | Msa1255280:CDS | 30.0% | |
ATAATATTGTACCACTGACA+TGG | + | chr8_2:53746502-53746521 | None:intergenic | 30.0% | |
AACTTTCTATCATAAATGGG+TGG | + | chr8_2:53746864-53746883 | None:intergenic | 30.0% | |
!!! | AAACCCCAAATTTTTTTCCA+TGG | + | chr8_2:53747035-53747054 | None:intergenic | 30.0% |
CTTCAAACTATGGTCATAAA+CGG | + | chr8_2:53747283-53747302 | None:intergenic | 30.0% | |
TGTTTCAAACCGTTCATACA+TGG | - | chr8_2:53743019-53743038 | Msa1255280:three_prime_UTR | 35.0% | |
GGCTTTCGAAGTTAAAAAGA+AGG | - | chr8_2:53743040-53743059 | Msa1255280:three_prime_UTR | 35.0% | |
!! | CAATTATATGGCTAGTTTCG+TGG | - | chr8_2:53743084-53743103 | Msa1255280:three_prime_UTR | 35.0% |
TTCGTCTTCGAAAACTCTTT+CGG | + | chr8_2:53743141-53743160 | None:intergenic | 35.0% | |
AGTCTTCATATGAACGTGTT+TGG | - | chr8_2:53743213-53743232 | Msa1255280:intron | 35.0% | |
!! | TTGGTGATGATGCATTGTAA+TGG | - | chr8_2:53743325-53743344 | Msa1255280:intron | 35.0% |
!!! | TTGTAATGGTTTTGTTGAGC+AGG | - | chr8_2:53743339-53743358 | Msa1255280:intron | 35.0% |
ATTGTCGTAGGTTCTATTGT+TGG | - | chr8_2:53743382-53743401 | Msa1255280:intron | 35.0% | |
CAATGATCAAAGTGAGCATA+GGG | + | chr8_2:53743465-53743484 | None:intergenic | 35.0% | |
AAGCTACAAATAGTAGCATG+TGG | - | chr8_2:53743636-53743655 | Msa1255280:intron | 35.0% | |
TACAAATAGTAGCATGTGGT+TGG | - | chr8_2:53743640-53743659 | Msa1255280:CDS | 35.0% | |
GAATGCATGTATTGTGTGTT+TGG | + | chr8_2:53743708-53743727 | None:intergenic | 35.0% | |
GTTATTGCAGGTATGATTAC+AGG | - | chr8_2:53743799-53743818 | Msa1255280:intron | 35.0% | |
AAGCCTCAGATTGTAATACA+CGG | + | chr8_2:53743839-53743858 | None:intergenic | 35.0% | |
CTAATTCCTAGCATTAGCAT+AGG | + | chr8_2:53743919-53743938 | None:intergenic | 35.0% | |
CTAATGCTAGGAATTAGCAT+TGG | - | chr8_2:53743922-53743941 | Msa1255280:intron | 35.0% | |
! | TCCACTAAAGCTTTAGTCAA+AGG | - | chr8_2:53744397-53744416 | Msa1255280:intron | 35.0% |
!! | TTATAGCTTGTTTGGATGTG+CGG | - | chr8_2:53744463-53744482 | Msa1255280:intron | 35.0% |
TATGTAGCTTCACTGTAAAC+GGG | - | chr8_2:53744545-53744564 | Msa1255280:intron | 35.0% | |
TACTATGCTACTGAACTTTC+AGG | - | chr8_2:53744686-53744705 | Msa1255280:intron | 35.0% | |
AGAACCTGATTCCAACATTT+GGG | + | chr8_2:53744730-53744749 | None:intergenic | 35.0% | |
TAGAACCTGATTCCAACATT+TGG | + | chr8_2:53744731-53744750 | None:intergenic | 35.0% | |
AGCCATCTACATGTAATAAC+TGG | + | chr8_2:53744781-53744800 | None:intergenic | 35.0% | |
!! | TCAGAAGCATCTGATATAAG+GGG | + | chr8_2:53744936-53744955 | None:intergenic | 35.0% |
!! | CTTCAGAAGCATCTGATATA+AGG | + | chr8_2:53744938-53744957 | None:intergenic | 35.0% |
CAGTGAATGTTGTCAAGTAA+AGG | + | chr8_2:53745100-53745119 | None:intergenic | 35.0% | |
CTTTACTTGACAACATTCAC+TGG | - | chr8_2:53745098-53745117 | Msa1255280:intron | 35.0% | |
AGTTCTTATGTATGTTTGGG+TGG | - | chr8_2:53745132-53745151 | Msa1255280:intron | 35.0% | |
! | AGTATTCTTAATCGGTGTTC+CGG | + | chr8_2:53745631-53745650 | None:intergenic | 35.0% |
TGCAAGGTCTAACTGAAATT+TGG | - | chr8_2:53745944-53745963 | Msa1255280:intron | 35.0% | |
AGTTCCTTTGCATAAGCATA+TGG | + | chr8_2:53746025-53746044 | None:intergenic | 35.0% | |
GAACTAGAGTAATTGCATCA+AGG | - | chr8_2:53746040-53746059 | Msa1255280:intron | 35.0% | |
ACTAGAGTAATTGCATCAAG+GGG | - | chr8_2:53746042-53746061 | Msa1255280:intron | 35.0% | |
ATAATAGCTGGTATGGTTAG+TGG | - | chr8_2:53746117-53746136 | Msa1255280:intron | 35.0% | |
!!! | CATTTTGGGACCATTGTTTT+TGG | - | chr8_2:53746164-53746183 | Msa1255280:intron | 35.0% |
!!! | GGACCATTGTTTTTGGAATT+GGG | - | chr8_2:53746171-53746190 | Msa1255280:intron | 35.0% |
AATGAATGAGTTTGTACCTG+AGG | + | chr8_2:53746204-53746223 | None:intergenic | 35.0% | |
TTAATGAGGTCTCGGTTTAA+TGG | - | chr8_2:53746283-53746302 | Msa1255280:CDS | 35.0% | |
! | TGCTACATCAACTTTTGCTA+TGG | - | chr8_2:53746464-53746483 | Msa1255280:intron | 35.0% |
TTATCTTTCTCACCACATGT+TGG | + | chr8_2:53746711-53746730 | None:intergenic | 35.0% | |
TGCCACCATGGAAAAAAATT+TGG | - | chr8_2:53747027-53747046 | Msa1255280:CDS | 35.0% | |
GCCACCATGGAAAAAAATTT+GGG | - | chr8_2:53747028-53747047 | Msa1255280:CDS | 35.0% | |
CCACCATGGAAAAAAATTTG+GGG | - | chr8_2:53747029-53747048 | Msa1255280:CDS | 35.0% | |
CATTGTACATGAGAATGAGT+AGG | + | chr8_2:53747322-53747341 | None:intergenic | 35.0% | |
CTTCGAAAGCCATGTATGAA+CGG | + | chr8_2:53743031-53743050 | None:intergenic | 40.0% | |
AGAAGTTTCTTCTGGTACAG+TGG | - | chr8_2:53743188-53743207 | Msa1255280:CDS | 40.0% | |
GTTGAGCAGGAAATGAAGTT+TGG | - | chr8_2:53743352-53743371 | Msa1255280:intron | 40.0% | |
AGCAGGAAATGAAGTTTGGT+TGG | - | chr8_2:53743356-53743375 | Msa1255280:intron | 40.0% | |
TTTGGTTGGAGAATTGTCGT+AGG | - | chr8_2:53743370-53743389 | Msa1255280:intron | 40.0% | |
!!! | TGGATTTTTTGGAGCAGCAT+TGG | - | chr8_2:53743402-53743421 | Msa1255280:CDS | 40.0% |
!!! | GGATTTTTTGGAGCAGCATT+GGG | - | chr8_2:53743403-53743422 | Msa1255280:CDS | 40.0% |
CCAATGATCAAAGTGAGCAT+AGG | + | chr8_2:53743466-53743485 | None:intergenic | 40.0% | |
CCTATGCTCACTTTGATCAT+TGG | - | chr8_2:53743463-53743482 | Msa1255280:CDS | 40.0% | |
TTCATATAGCTTCTGAACCG+CGG | + | chr8_2:53743666-53743685 | None:intergenic | 40.0% | |
! | TATGAACTAGCTTCTGAACG+CGG | - | chr8_2:53743680-53743699 | Msa1255280:CDS | 40.0% |
!! | GCTGCTATCTTTGTTATTGC+AGG | - | chr8_2:53743787-53743806 | Msa1255280:intron | 40.0% |
CAACCGTGTATTACAATCTG+AGG | - | chr8_2:53743833-53743852 | Msa1255280:intron | 40.0% | |
TAAGTGGCATGTCTAGTGTT+GGG | + | chr8_2:53743867-53743886 | None:intergenic | 40.0% | |
ATAAGTGGCATGTCTAGTGT+TGG | + | chr8_2:53743868-53743887 | None:intergenic | 40.0% | |
TTTCAGCCTATGCTAATGCT+AGG | - | chr8_2:53743910-53743929 | Msa1255280:intron | 40.0% | |
! | TGTCATGTTTGCTGATTGGA+TGG | - | chr8_2:53743957-53743976 | Msa1255280:intron | 40.0% |
GTGAATGCTTTGTATTGCTC+AGG | + | chr8_2:53744119-53744138 | None:intergenic | 40.0% | |
AGTGACCGATGAATTGAGAT+CGG | - | chr8_2:53744161-53744180 | Msa1255280:CDS | 40.0% | |
! | TATCCAGTTGATGCAACACA+TGG | - | chr8_2:53744363-53744382 | Msa1255280:intron | 40.0% |
TTGATGCAACACATGGTGAT+AGG | - | chr8_2:53744370-53744389 | Msa1255280:intron | 40.0% | |
! | GCCTTTGACTAAAGCTTTAG+TGG | + | chr8_2:53744401-53744420 | None:intergenic | 40.0% |
!! | TAGTCAAAGGCATCGATACA+TGG | - | chr8_2:53744410-53744429 | Msa1255280:intron | 40.0% |
!! | AGGCATCGATACATGGAAAA+AGG | - | chr8_2:53744417-53744436 | Msa1255280:intron | 40.0% |
! | ATCACGGCAATTTTTGCCTT+GGG | + | chr8_2:53744510-53744529 | None:intergenic | 40.0% |
! | AATCACGGCAATTTTTGCCT+TGG | + | chr8_2:53744511-53744530 | None:intergenic | 40.0% |
AGGCAAAAATTGCCGTGATT+TGG | - | chr8_2:53744511-53744530 | Msa1255280:intron | 40.0% | |
ATGTAGCTTCACTGTAAACG+GGG | - | chr8_2:53744546-53744565 | Msa1255280:intron | 40.0% | |
ACGGTACAATTTCCACATCA+AGG | + | chr8_2:53744589-53744608 | None:intergenic | 40.0% | |
GTTTGTAGGCACTTACAATC+AGG | + | chr8_2:53744756-53744775 | None:intergenic | 40.0% | |
TCTTCATCTTGTAGATCAGC+TGG | + | chr8_2:53744978-53744997 | None:intergenic | 40.0% | |
AGCTGATCTACAAGATGAAG+AGG | - | chr8_2:53744977-53744996 | Msa1255280:intron | 40.0% | |
AGAATGATCTGGAAAACCCT+TGG | + | chr8_2:53745012-53745031 | None:intergenic | 40.0% | |
ACTTGACAACATTCACTGGA+AGG | - | chr8_2:53745102-53745121 | Msa1255280:intron | 40.0% | |
TTGGCTTCTTAATTCCTTGC+AGG | - | chr8_2:53745306-53745325 | Msa1255280:intron | 40.0% | |
! | GTATTCTTAATCGGTGTTCC+GGG | + | chr8_2:53745630-53745649 | None:intergenic | 40.0% |
GAAGCCATATGCTTATGCAA+AGG | - | chr8_2:53746018-53746037 | Msa1255280:intron | 40.0% | |
AGTAATTGCATCAAGGGGAA+AGG | - | chr8_2:53746047-53746066 | Msa1255280:intron | 40.0% | |
ATCTGTCTTTACTGCTTCTG+TGG | - | chr8_2:53746093-53746112 | Msa1255280:intron | 40.0% | |
TGCTTCTGTGGAATAATAGC+TGG | - | chr8_2:53746105-53746124 | Msa1255280:intron | 40.0% | |
CTGTGGAATAATAGCTGGTA+TGG | - | chr8_2:53746110-53746129 | Msa1255280:intron | 40.0% | |
!!! | GGGACCATTGTTTTTGGAAT+TGG | - | chr8_2:53746170-53746189 | Msa1255280:intron | 40.0% |
ATATTGTACCACTGACATGG+AGG | + | chr8_2:53746499-53746518 | None:intergenic | 40.0% | |
! | GTTTCTTACCATAGGGTACT+GGG | + | chr8_2:53746539-53746558 | None:intergenic | 40.0% |
TGTTTCTTACCATAGGGTAC+TGG | + | chr8_2:53746540-53746559 | None:intergenic | 40.0% | |
ACTGATTGCGCTCACAAAAA+TGG | + | chr8_2:53746782-53746801 | None:intergenic | 40.0% | |
TTTGTGAGCGCAATCAGTTT+AGG | - | chr8_2:53746784-53746803 | Msa1255280:CDS | 40.0% | |
!!! | GTCTCATTTTTGGCTATCAC+AGG | - | chr8_2:53746937-53746956 | Msa1255280:intron | 40.0% |
!!! | TCATTTTTGGCTATCACAGG+TGG | - | chr8_2:53746940-53746959 | Msa1255280:intron | 40.0% |
!!! | CATTTTTGGCTATCACAGGT+GGG | - | chr8_2:53746941-53746960 | Msa1255280:intron | 40.0% |
!!! | ATTTTTGGCTATCACAGGTG+GGG | - | chr8_2:53746942-53746961 | Msa1255280:intron | 40.0% |
!!! | CCCCAAATTTTTTTCCATGG+TGG | + | chr8_2:53747032-53747051 | None:intergenic | 40.0% |
GCAGATTGTGTAACAATGAC+TGG | - | chr8_2:53747153-53747172 | Msa1255280:five_prime_UTR | 40.0% | |
GTATGATTACAGGAGCAGCT+GGG | - | chr8_2:53743809-53743828 | Msa1255280:intron | 45.0% | |
ACCGATGAATTGAGATCGGA+CGG | - | chr8_2:53744165-53744184 | Msa1255280:CDS | 45.0% | |
ACCGTCCGATCTCAATTCAT+CGG | + | chr8_2:53744169-53744188 | None:intergenic | 45.0% | |
TAACGCATATAGGTGGTCGT+TGG | + | chr8_2:53744269-53744288 | None:intergenic | 45.0% | |
TCACCATGTGTTGCATCAAC+TGG | + | chr8_2:53744369-53744388 | None:intergenic | 45.0% | |
TCCACATCAAGGCAAAAGCA+CGG | + | chr8_2:53744578-53744597 | None:intergenic | 45.0% | |
!! | TAAGCCTGTGTTTGGCTCTA+CGG | + | chr8_2:53744608-53744627 | None:intergenic | 45.0% |
GAACTTTCAGGAAGCCTTTG+AGG | - | chr8_2:53744698-53744717 | Msa1255280:intron | 45.0% | |
AGAAATGTTAACCGGTGTCC+CGG | - | chr8_2:53745609-53745628 | Msa1255280:intron | 45.0% | |
CAAGGGGAAAGGAAATCACT+TGG | - | chr8_2:53746058-53746077 | Msa1255280:intron | 45.0% | |
!! | GGTATGGTTAGTGGTTTGCT+TGG | - | chr8_2:53746126-53746145 | Msa1255280:intron | 45.0% |
!! | GTTAGTGGTTTGCTTGGTCT+AGG | - | chr8_2:53746132-53746151 | Msa1255280:intron | 45.0% |
! | TCTAGGAGGTGGCTTCATTT+TGG | - | chr8_2:53746149-53746168 | Msa1255280:intron | 45.0% |
! | CTAGGAGGTGGCTTCATTTT+GGG | - | chr8_2:53746150-53746169 | Msa1255280:intron | 45.0% |
GAATGAGTTTGTACCTGAGG+AGG | + | chr8_2:53746201-53746220 | None:intergenic | 45.0% | |
TTTCTCTTCCTCCATGTCAG+TGG | - | chr8_2:53746488-53746507 | Msa1255280:intron | 45.0% | |
GCAACCATAGCTGCATTAAC+CGG | - | chr8_2:53746685-53746704 | Msa1255280:CDS | 45.0% | |
AGGCAACATGGTTGAGAAGA+TGG | - | chr8_2:53746972-53746991 | Msa1255280:CDS | 45.0% | |
TTTGACAATCTCTGCCACCA+TGG | - | chr8_2:53747015-53747034 | Msa1255280:CDS | 45.0% | |
!!! | TTTTGTATTTTTTTTTTTTT+TGG | + | chr8_2:53742976-53742995 | None:intergenic | 5.0% |
! | CAGCATTGGGAAGTGTAGGA+GGG | - | chr8_2:53743416-53743435 | Msa1255280:CDS | 50.0% |
! | AGCATTGGGAAGTGTAGGAG+GGG | - | chr8_2:53743417-53743436 | Msa1255280:CDS | 50.0% |
GAGAGGGCTGTAGAAGACTT+TGG | + | chr8_2:53743496-53743515 | None:intergenic | 50.0% | |
GGTATGATTACAGGAGCAGC+TGG | - | chr8_2:53743808-53743827 | Msa1255280:intron | 50.0% | |
!! | TAGCTTGTTTGGATGTGCGG+TGG | - | chr8_2:53744466-53744485 | Msa1255280:intron | 50.0% |
TGTACCGTAGAGCCAAACAC+AGG | - | chr8_2:53744601-53744620 | Msa1255280:intron | 50.0% | |
CATTTGGGCTGCTTCCTCAA+AGG | + | chr8_2:53744715-53744734 | None:intergenic | 50.0% | |
TGAGGAAGCAGCCCAAATGT+TGG | - | chr8_2:53744716-53744735 | Msa1255280:intron | 50.0% | |
GCAGCCCAAATGTTGGAATC+AGG | - | chr8_2:53744723-53744742 | Msa1255280:intron | 50.0% | |
GTATCCTTAACCAGTGCCCA+GGG | - | chr8_2:53745756-53745775 | Msa1255280:CDS | 50.0% | |
!! | AGTGGTTTGCTTGGTCTAGG+AGG | - | chr8_2:53746135-53746154 | Msa1255280:intron | 50.0% |
GGAATTGGGAATTCCTCCTC+AGG | - | chr8_2:53746185-53746204 | Msa1255280:CDS | 50.0% | |
TTGGCCGGTTAATGCAGCTA+TGG | + | chr8_2:53746692-53746711 | None:intergenic | 50.0% | |
TGCATTAACCGGCCAACATG+TGG | - | chr8_2:53746696-53746715 | Msa1255280:CDS | 50.0% | |
CTTTCTCACCACATGTTGGC+CGG | + | chr8_2:53746707-53746726 | None:intergenic | 50.0% | |
! | GGAGCAGCATTGGGAAGTGT+AGG | - | chr8_2:53743412-53743431 | Msa1255280:CDS | 55.0% |
! | GCAGCATTGGGAAGTGTAGG+AGG | - | chr8_2:53743415-53743434 | Msa1255280:CDS | 55.0% |
! | TTGGGAAGTGTAGGAGGGGT+AGG | - | chr8_2:53743421-53743440 | Msa1255280:CDS | 55.0% |
! | TAGTAGCATGTGGTTGGCCG+CGG | - | chr8_2:53743646-53743665 | Msa1255280:CDS | 55.0% |
! | CATCAAGGCAAAAGCACGGC+AGG | + | chr8_2:53744574-53744593 | None:intergenic | 55.0% |
! | GCCGTGCTTTTGCCTTGATG+TGG | - | chr8_2:53744574-53744593 | Msa1255280:intron | 55.0% |
! | TAATCGGTGTTCCGGGACAC+CGG | + | chr8_2:53745623-53745642 | None:intergenic | 55.0% |
GGTATCCTTAACCAGTGCCC+AGG | - | chr8_2:53745755-53745774 | Msa1255280:CDS | 55.0% | |
TCATGCTAACCGGTGTCCCT+GGG | + | chr8_2:53745775-53745794 | None:intergenic | 55.0% | |
! | GGTTTGCTTGGTCTAGGAGG+TGG | - | chr8_2:53746138-53746157 | Msa1255280:intron | 55.0% |
GATCGCTTCCCAGTACCCTA+TGG | - | chr8_2:53746528-53746547 | Msa1255280:intron | 55.0% | |
TTTGGCTATCACAGGTGGGG+TGG | - | chr8_2:53746945-53746964 | Msa1255280:intron | 55.0% | |
TTGGCTATCACAGGTGGGGT+GGG | - | chr8_2:53746946-53746965 | Msa1255280:intron | 55.0% | |
ATCACAGGTGGGGTGGGAAT+AGG | - | chr8_2:53746952-53746971 | Msa1255280:CDS | 55.0% | |
TGGGGTGGGAATAGGCAACA+TGG | - | chr8_2:53746960-53746979 | Msa1255280:CDS | 55.0% | |
! | GGAAGTGTAGGAGGGGTAGG+AGG | - | chr8_2:53743424-53743443 | Msa1255280:CDS | 60.0% |
AGTGTAGGAGGGGTAGGAGG+TGG | - | chr8_2:53743427-53743446 | Msa1255280:CDS | 60.0% | |
! | GCAGCTTTTCTCGCGTCCCA+AGG | - | chr8_2:53744491-53744510 | Msa1255280:intron | 60.0% |
!! | GTGTCCCTGGGCACTGGTTA+AGG | + | chr8_2:53745763-53745782 | None:intergenic | 60.0% |
TAACCAGTGCCCAGGGACAC+CGG | - | chr8_2:53745763-53745782 | Msa1255280:CDS | 60.0% | |
GTCATGCTAACCGGTGTCCC+TGG | + | chr8_2:53745776-53745795 | None:intergenic | 60.0% | |
GTAGGAGGGGTAGGAGGTGG+AGG | - | chr8_2:53743430-53743449 | Msa1255280:CDS | 65.0% | |
TAACCGGTGTCCCTGGGCAC+TGG | + | chr8_2:53745769-53745788 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 53742844 | 53747345 | 53742844 | ID=Msa1255280;Name=Msa1255280 |
chr8_2 | mRNA | 53742844 | 53747345 | 53742844 | ID=Msa1255280-mRNA-1;Parent=Msa1255280;Name=Msa1255280-mRNA-1;_AED=0.19;_eAED=0.19;_QI=194|1|1|1|1|1|12|289|473 |
chr8_2 | exon | 53742844 | 53743230 | 53742844 | ID=Msa1255280-mRNA-1:exon:16678;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53743384 | 53743524 | 53743384 | ID=Msa1255280-mRNA-1:exon:16677;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53743640 | 53743733 | 53743640 | ID=Msa1255280-mRNA-1:exon:16676;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53743983 | 53744201 | 53743983 | ID=Msa1255280-mRNA-1:exon:16675;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53744862 | 53744912 | 53744862 | ID=Msa1255280-mRNA-1:exon:16674;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53745009 | 53745095 | 53745009 | ID=Msa1255280-mRNA-1:exon:16673;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53745191 | 53745243 | 53745191 | ID=Msa1255280-mRNA-1:exon:16672;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53745430 | 53745481 | 53745430 | ID=Msa1255280-mRNA-1:exon:16671;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53745733 | 53745797 | 53745733 | ID=Msa1255280-mRNA-1:exon:16670;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53746180 | 53746380 | 53746180 | ID=Msa1255280-mRNA-1:exon:16669;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53746669 | 53746828 | 53746669 | ID=Msa1255280-mRNA-1:exon:16668;Parent=Msa1255280-mRNA-1 |
chr8_2 | exon | 53746951 | 53747345 | 53746951 | ID=Msa1255280-mRNA-1:exon:16667;Parent=Msa1255280-mRNA-1 |
chr8_2 | five_prime_UTR | 53747152 | 53747345 | 53747152 | ID=Msa1255280-mRNA-1:five_prime_utr;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53746951 | 53747151 | 53746951 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53746669 | 53746828 | 53746669 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53746180 | 53746380 | 53746180 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53745733 | 53745797 | 53745733 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53745430 | 53745481 | 53745430 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53745191 | 53745243 | 53745191 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53745009 | 53745095 | 53745009 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53744862 | 53744912 | 53744862 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53743983 | 53744201 | 53743983 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53743640 | 53743733 | 53743640 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53743384 | 53743524 | 53743384 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | CDS | 53743133 | 53743230 | 53743133 | ID=Msa1255280-mRNA-1:cds;Parent=Msa1255280-mRNA-1 |
chr8_2 | three_prime_UTR | 53742844 | 53743132 | 53742844 | ID=Msa1255280-mRNA-1:three_prime_utr;Parent=Msa1255280-mRNA-1 |
Gene Sequence |
Protein sequence |