AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene006617

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006617.t1 MTR_4g078630 98.246 285 5 0 1 285 1 285 0.0 575
MS.gene006617.t1 MTR_7g071680 46.786 280 132 6 15 279 25 302 2.38e-77 237
MS.gene006617.t1 MTR_4g052340 47.955 269 126 4 17 282 12 269 3.49e-74 228
MS.gene006617.t1 MTR_4g052350 46.886 273 127 4 15 282 10 269 2.99e-71 221
MS.gene006617.t1 MTR_4g052300 46.768 263 122 4 18 275 7 256 5.07e-70 217
MS.gene006617.t1 MTR_7g107670 45.560 259 134 5 17 272 31 285 1.80e-69 217
MS.gene006617.t1 MTR_4g052320 45.977 261 128 3 18 275 7 257 2.49e-68 213
MS.gene006617.t1 MTR_7g083870 45.588 272 137 7 17 284 33 297 3.67e-67 211
MS.gene006617.t1 MTR_7g110130 44.776 268 136 4 14 277 1 260 7.13e-66 207
MS.gene006617.t1 MTR_3g020670 45.091 275 144 4 5 274 1 273 1.84e-64 204
MS.gene006617.t1 MTR_6g023590 44.747 257 131 4 18 270 12 261 5.10e-64 202
MS.gene006617.t1 MTR_6g023990 44.697 264 135 4 11 270 6 262 5.75e-63 199
MS.gene006617.t1 MTR_6g023610 45.098 255 129 4 18 268 12 259 8.25e-63 199
MS.gene006617.t1 MTR_7g110160 46.241 266 110 5 14 274 1 238 3.32e-62 197
MS.gene006617.t1 MTR_2g090165 41.971 274 146 5 14 283 1 265 4.41e-62 197
MS.gene006617.t1 MTR_7g105460 45.018 271 135 5 18 283 12 273 4.00e-61 195
MS.gene006617.t1 MTR_6g023910 42.481 266 142 3 18 279 12 270 4.26e-61 195
MS.gene006617.t1 MTR_7g110140 45.525 257 129 4 18 271 5 253 7.34e-61 194
MS.gene006617.t1 MTR_6g023600 44.531 256 131 4 18 269 12 260 2.47e-60 192
MS.gene006617.t1 MTR_6g023950 46.094 256 127 5 18 269 12 260 1.05e-59 191
MS.gene006617.t1 MTR_6g023600 44.141 256 126 5 18 269 12 254 4.11e-57 184
MS.gene006617.t1 MTR_7g105580 40.613 261 126 6 17 274 6 240 5.10e-56 181
MS.gene006617.t1 MTR_7g105590 48.168 191 95 2 17 204 6 195 2.00e-54 175
MS.gene006617.t1 MTR_6g035395 41.154 260 135 5 17 276 3 244 1.70e-52 172
MS.gene006617.t1 MTR_3g113870 42.211 199 109 4 32 227 34 229 1.29e-46 156
MS.gene006617.t1 MTR_7g105570 44.554 202 101 4 84 283 38 230 1.77e-38 135
MS.gene006617.t1 MTR_4g084800 49.242 132 64 1 17 145 11 142 1.37e-35 125
MS.gene006617.t1 MTR_1g082760 30.566 265 156 6 18 269 39 288 5.10e-25 101
MS.gene006617.t1 MTR_7g113650 29.811 265 158 7 18 269 39 288 6.41e-24 98.6
MS.gene006617.t1 MTR_4g132850 31.439 264 157 8 16 272 4 250 1.56e-23 96.7
MS.gene006617.t1 MTR_3g085740 30.000 270 163 9 10 270 66 318 3.90e-21 91.7
MS.gene006617.t1 MTR_7g094510 30.385 260 160 6 19 269 6 253 9.35e-21 89.4
MS.gene006617.t1 MTR_3g068155 28.958 259 165 8 19 271 19 264 1.51e-20 89.0
MS.gene006617.t1 MTR_3g068070 29.167 264 158 9 19 271 15 260 2.32e-20 88.6
MS.gene006617.t1 MTR_4g131740 27.113 284 177 8 1 270 23 290 5.34e-20 87.8
MS.gene006617.t1 MTR_3g068065 30.000 260 163 9 19 272 17 263 1.90e-19 86.3
MS.gene006617.t1 MTR_1196s0010 30.800 250 157 5 22 269 277 512 4.73e-19 87.0
MS.gene006617.t1 MTR_3g068085 30.943 265 152 12 19 271 15 260 4.84e-19 84.7
MS.gene006617.t1 MTR_7g094520 29.008 262 163 7 19 270 11 259 5.00e-18 82.0
MS.gene006617.t1 MTR_7g063360 29.008 262 165 7 19 271 16 265 1.74e-17 80.5
MS.gene006617.t1 MTR_1g051165 27.562 283 169 7 10 271 4 271 1.92e-17 80.5
MS.gene006617.t1 MTR_4g064887 28.044 271 152 11 19 271 15 260 1.39e-16 78.2
MS.gene006617.t1 MTR_4g058810 29.278 263 166 6 19 271 11 263 2.67e-16 77.4
MS.gene006617.t1 MTR_4g058840 29.278 263 166 6 19 271 11 263 2.92e-16 77.4
MS.gene006617.t1 MTR_4g058820 29.278 263 166 6 19 271 11 263 2.92e-16 77.4
MS.gene006617.t1 MTR_7g063390 27.757 263 167 7 19 271 16 265 2.52e-14 71.6
MS.gene006617.t1 MTR_7g063260 27.547 265 167 5 19 272 16 266 6.30e-14 70.5
MS.gene006617.t1 MTR_8g096580 29.592 196 129 3 22 211 48 240 1.11e-13 70.5
MS.gene006617.t1 MTR_3g068175 27.206 272 179 8 6 271 4 262 3.12e-13 68.6
MS.gene006617.t1 MTR_8g442750 29.021 286 162 11 5 270 1 265 3.29e-13 68.9
MS.gene006617.t1 MTR_7g063320 26.336 262 170 6 19 270 15 263 3.52e-13 68.6
MS.gene006617.t1 MTR_4g086400 28.922 204 127 4 21 208 6 207 8.89e-13 68.6
MS.gene006617.t1 MTR_1g068955 28.358 268 168 7 12 268 7 261 2.00e-12 66.6
MS.gene006617.t1 MTR_8g096620 27.638 199 128 5 16 205 42 233 5.76e-12 65.5
MS.gene006617.t1 MTR_7g063330 26.616 263 171 7 19 272 15 264 9.07e-12 64.3
MS.gene006617.t1 MTR_8g044240 26.531 196 129 4 25 207 75 268 1.03e-11 64.7
MS.gene006617.t1 MTR_3g068175 26.449 276 180 9 6 271 4 266 1.93e-11 63.5
MS.gene006617.t1 MTR_7g063270 26.792 265 168 7 19 272 16 265 2.50e-11 63.2
MS.gene006617.t1 MTR_7g076660 31.056 161 94 7 22 166 8 167 3.80e-11 62.8
MS.gene006617.t1 MTR_4g086410 28.000 200 128 3 21 205 6 204 4.60e-11 63.5
MS.gene006617.t1 MTR_7g080410 29.302 215 121 9 22 212 41 248 6.28e-11 62.4
MS.gene006617.t1 MTR_7g080410 29.245 212 125 8 22 212 41 248 6.61e-11 62.0
MS.gene006617.t1 MTR_7g076660 30.435 161 95 7 22 166 7 166 7.04e-11 62.0
MS.gene006617.t1 MTR_7g076655 31.447 159 92 7 24 166 9 166 9.43e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene006617.t1 AT3G42960 58.889 270 108 3 15 282 4 272 3.94e-106 310
MS.gene006617.t1 AT3G51680 46.520 273 135 3 14 275 27 299 4.36e-72 224
MS.gene006617.t1 AT3G26770 45.977 261 131 7 17 272 39 294 6.37e-67 211
MS.gene006617.t1 AT2G47140 45.946 259 129 4 14 269 1 251 2.57e-66 207
MS.gene006617.t1 AT3G26760 42.803 264 145 5 17 276 34 295 4.95e-63 201
MS.gene006617.t1 AT4G03140 42.966 263 143 5 17 276 76 334 1.32e-62 201
MS.gene006617.t1 AT2G47120 41.634 257 137 5 18 271 6 252 1.01e-57 186
MS.gene006617.t1 AT2G47120 41.634 257 137 5 18 271 5 251 1.02e-57 186
MS.gene006617.t1 AT3G29250 42.692 260 132 6 18 271 5 253 3.57e-57 184
MS.gene006617.t1 AT3G29250 41.573 267 139 6 11 271 34 289 9.32e-57 184
MS.gene006617.t1 AT3G29260 42.045 264 135 6 14 271 1 252 1.13e-56 183
MS.gene006617.t1 AT2G47130 40.467 257 141 3 18 271 5 252 7.18e-56 181
MS.gene006617.t1 AT3G29250 42.471 259 132 6 19 271 44 291 1.02e-55 182
MS.gene006617.t1 AT1G52340 42.264 265 144 3 17 274 16 278 3.06e-55 180
MS.gene006617.t1 AT2G47150 28.800 250 120 5 21 270 3 194 2.82e-23 94.7
MS.gene006617.t1 AT2G29310 27.857 280 159 8 19 282 7 259 7.50e-22 92.4
MS.gene006617.t1 AT1G54870 28.679 265 161 6 18 269 81 330 1.32e-21 93.2
MS.gene006617.t1 AT1G54870 28.679 265 161 6 18 269 83 332 1.39e-21 93.2
MS.gene006617.t1 AT3G03980 30.037 273 157 8 16 269 11 268 2.44e-21 91.3
MS.gene006617.t1 AT4G05530 30.827 266 156 9 16 272 6 252 1.87e-20 88.6
MS.gene006617.t1 AT5G18210 30.943 265 153 8 19 268 8 257 2.43e-20 88.2
MS.gene006617.t1 AT3G04000 28.676 272 163 7 16 269 11 269 2.74e-20 88.6
MS.gene006617.t1 AT5G06060 28.958 259 165 7 19 271 9 254 3.29e-20 88.2
MS.gene006617.t1 AT5G18210 32.271 251 140 8 19 254 8 243 4.43e-20 87.8
MS.gene006617.t1 AT3G05260 29.930 284 167 10 1 270 20 285 9.42e-20 87.4
MS.gene006617.t1 AT2G30670 27.170 265 162 7 19 271 7 252 2.20e-19 85.9
MS.gene006617.t1 AT2G29330 27.899 276 164 8 19 282 7 259 8.40e-19 84.0
MS.gene006617.t1 AT1G24360 29.304 273 161 9 5 270 70 317 9.38e-19 85.1
MS.gene006617.t1 AT2G29320 27.437 277 165 8 19 282 13 266 1.78e-17 80.5
MS.gene006617.t1 AT2G29290 28.261 276 163 9 19 282 7 259 2.55e-17 80.1
MS.gene006617.t1 AT2G29360 26.523 279 175 10 5 271 1 261 2.57e-17 80.1
MS.gene006617.t1 AT2G29340 26.786 280 162 8 19 282 7 259 3.80e-17 79.7
MS.gene006617.t1 AT1G07450 27.863 262 163 9 19 271 8 252 4.64e-17 79.3
MS.gene006617.t1 AT2G29350 26.996 263 160 8 21 271 17 259 5.22e-17 79.3
MS.gene006617.t1 AT2G29260 28.571 266 157 8 19 271 68 313 5.37e-17 80.1
MS.gene006617.t1 AT2G29150 29.151 271 160 9 11 269 8 258 5.85e-17 79.3
MS.gene006617.t1 AT2G29340 26.786 280 162 8 19 282 7 259 7.52e-17 79.3
MS.gene006617.t1 AT1G63380 28.676 272 172 8 12 271 14 275 1.05e-16 78.6
MS.gene006617.t1 AT1G62610 28.159 277 178 6 6 271 1 267 1.05e-16 78.6
MS.gene006617.t1 AT1G63380 28.623 276 176 7 7 271 5 270 1.18e-16 78.6
MS.gene006617.t1 AT1G63380 27.660 282 179 8 1 271 1 268 1.18e-16 78.6
MS.gene006617.t1 AT1G63380 28.676 272 172 8 12 271 11 272 1.28e-16 78.6
MS.gene006617.t1 AT2G29310 27.039 233 138 7 55 282 52 257 1.64e-16 77.8
MS.gene006617.t1 AT2G29300 25.843 267 164 8 19 271 7 253 1.66e-16 77.8
MS.gene006617.t1 AT1G62610 28.309 272 173 7 12 271 5 266 1.81e-16 77.8
MS.gene006617.t1 AT1G62610 27.305 282 180 7 1 271 1 268 1.82e-16 77.8
MS.gene006617.t1 AT1G62610 28.309 272 173 7 12 271 11 272 2.11e-16 77.8
MS.gene006617.t1 AT2G29300 25.843 267 164 8 19 271 7 253 2.37e-16 77.8
MS.gene006617.t1 AT2G29370 27.437 277 175 10 5 271 1 261 2.62e-16 77.4
MS.gene006617.t1 AT3G55290 29.545 264 164 7 19 271 18 270 2.88e-16 77.4
MS.gene006617.t1 AT3G55290 29.545 264 164 7 19 271 17 269 2.90e-16 77.4
MS.gene006617.t1 AT1G07440 27.957 279 159 10 19 282 12 263 3.08e-16 77.0
MS.gene006617.t1 AT3G55310 29.699 266 161 8 19 271 17 269 3.27e-16 77.4
MS.gene006617.t1 AT4G13180 28.520 277 171 9 5 270 1 261 6.80e-16 76.3
MS.gene006617.t1 AT2G29310 29.648 199 119 5 19 205 7 196 1.00e-15 74.3
MS.gene006617.t1 AT1G49670 28.502 207 118 4 21 205 6 204 2.67e-14 73.2
MS.gene006617.t1 AT2G29290 27.948 229 141 7 55 282 37 242 2.82e-14 71.2
MS.gene006617.t1 AT1G49670 28.502 207 118 4 21 205 6 204 3.26e-14 73.2
MS.gene006617.t1 AT5G50770 31.553 206 124 6 7 205 38 233 6.80e-14 71.2
MS.gene006617.t1 AT2G29350 28.934 197 119 6 21 205 17 204 9.05e-14 69.3
MS.gene006617.t1 AT2G29350 26.368 201 133 5 72 271 35 221 1.78e-13 68.9
MS.gene006617.t1 AT3G46170 26.937 271 177 7 12 271 18 278 6.22e-13 68.2
MS.gene006617.t1 AT2G17845 28.195 266 164 9 19 269 47 300 1.15e-12 67.4
MS.gene006617.t1 AT2G29320 27.230 213 136 6 72 282 53 248 1.79e-12 66.2
MS.gene006617.t1 AT3G47350 29.358 218 131 7 21 225 46 253 1.28e-11 64.3
MS.gene006617.t1 AT2G29340 27.979 193 118 5 19 199 7 190 1.56e-11 62.8
MS.gene006617.t1 AT2G29340 27.979 193 118 5 19 199 7 190 1.56e-11 62.8
MS.gene006617.t1 AT3G47350 29.358 218 131 7 21 225 46 253 1.94e-11 63.9

Find 43 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTATTTGCAGAAAA+TGG 0.160943 4.4:-32013226 MS.gene006617:CDS
TGATTCAATGTCAGATTCTT+TGG 0.249438 4.4:+32013114 None:intergenic
CTCAAAATTTAGCTCCAAAA+AGG 0.265907 4.4:-32013385 MS.gene006617:intron
ATGAATGCAAGTTTGCTTAA+AGG 0.265952 4.4:-32012493 MS.gene006617:CDS
GAACAATTGAGTGAGTTTAT+TGG 0.274099 4.4:-32012517 MS.gene006617:CDS
TTACTTTCAATCAATCTCTT+TGG 0.274120 4.4:-32012814 MS.gene006617:CDS
GCTCATAATCTTTCAGTTGA+TGG 0.326713 4.4:-32012397 MS.gene006617:CDS
TGAATGCAAGTTTGCTTAAA+GGG 0.337129 4.4:-32012492 MS.gene006617:CDS
TTTCTCTTCACTTAGGATCT+TGG 0.355190 4.4:+32012335 None:intergenic
AGAAGTGCGGCGTGTGAATT+AGG 0.357629 4.4:-32012640 MS.gene006617:CDS
TTCAACAATGCAGGAATTGC+AGG 0.375028 4.4:-32013046 MS.gene006617:intron
TTGCAGCATGTTTGATTCCA+TGG 0.396161 4.4:+32012785 None:intergenic
CAGTTAACCTTTCAATATCA+TGG 0.401447 4.4:-32013090 MS.gene006617:CDS
ACAGGCGGTGCAAGAGGAAT+TGG 0.413923 4.4:-32013259 MS.gene006617:CDS
GGTAAGGTAGCAGTTATAAC+AGG 0.437302 4.4:-32013277 MS.gene006617:CDS
TCAAGTGCAGCTGCAACTAT+AGG 0.447304 4.4:-32012718 MS.gene006617:CDS
CCCGTAATTGCAGGCTATGA+AGG 0.465657 4.4:-32012877 MS.gene006617:intron
AGGGTTGCTGAATCAATTGA+TGG 0.484224 4.4:-32013160 MS.gene006617:CDS
GACATAATGTTCAACAATGC+AGG 0.487244 4.4:-32013055 MS.gene006617:CDS
AATCTCTTTGGAACAATCCA+TGG 0.489840 4.4:-32012802 MS.gene006617:CDS
TACAATGTCAAAATCAGCTA+TGG 0.496795 4.4:-32012674 MS.gene006617:CDS
TGTTGAACATTATGTCTAAG+TGG 0.506022 4.4:+32013062 None:intergenic
GGCCTTTCCATGATATTGAA+AGG 0.513624 4.4:+32013083 None:intergenic
TTCTAGATGAAGAAGGCACC+AGG 0.520405 4.4:-32013180 MS.gene006617:CDS
AACCTTTCAATATCATGGAA+AGG 0.544623 4.4:-32013085 MS.gene006617:CDS
GCAAGTTTGCTTAAAGGGAG+AGG 0.554131 4.4:-32012487 MS.gene006617:CDS
GTTAATTGTGTTTCTCCGCA+CGG 0.557216 4.4:-32012601 MS.gene006617:CDS
CATAATCTTTCAGTTGATGG+TGG 0.564721 4.4:-32012394 MS.gene006617:CDS
ATGTCAAAATCAGCTATGGA+TGG 0.568969 4.4:-32012670 MS.gene006617:CDS
ATCAATTGATTCAGCAACCC+TGG 0.571405 4.4:+32013162 None:intergenic
AAGCATAACAACACTTGACA+TGG 0.580277 4.4:-32012851 MS.gene006617:CDS
GTTATAACAGGCGGTGCAAG+AGG 0.580952 4.4:-32013265 MS.gene006617:CDS
GCTGATGTTCTAGATGAAGA+AGG 0.589049 4.4:-32013187 MS.gene006617:CDS
AGTGCAGCTGCAACTATAGG+TGG 0.592641 4.4:-32012715 MS.gene006617:CDS
AACAACTGATGATGTTGCAC+AGG 0.603862 4.4:-32012461 MS.gene006617:CDS
GCATTCAAAAGCATCTCAGA+AGG 0.609801 4.4:+32012574 None:intergenic
ATAGGTGGATTCGCTTCACA+TGG 0.610255 4.4:-32012700 MS.gene006617:CDS
GCTGCAAAAGCAATGATCAA+AGG 0.629252 4.4:-32012769 MS.gene006617:CDS
ATCTCAGAAGGAACGCCGTG+CGG 0.661162 4.4:+32012586 None:intergenic
GGATGGATTAATGAGAAGTG+CGG 0.667924 4.4:-32012653 MS.gene006617:CDS
AAGGTAGCAGTTATAACAGG+CGG 0.690916 4.4:-32013274 MS.gene006617:CDS
TCTAGATGAAGAAGGCACCA+GGG 0.716790 4.4:-32013179 MS.gene006617:CDS
TCTACATTCTGAATCATACG+TGG 0.728605 4.4:+32013410 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTAATATCATATGAT+AGG + chr4.4:32012431-32012450 None:intergenic 15.0%
!!! TTAGTTAAAATAGTTTTGTT+TGG - chr4.4:32012820-32012839 MS.gene006617:CDS 15.0%
!!! TTTCTTTTGAAATGTTTTTA+AGG - chr4.4:32012452-32012471 MS.gene006617:CDS 15.0%
!!! ATAGTTTTGTTTGGATATTT+AGG - chr4.4:32012829-32012848 MS.gene006617:CDS 20.0%
!!! TTGAATGCTTTTAAATGTTA+CGG - chr4.4:32013199-32013218 MS.gene006617:CDS 20.0%
! GCAAAATTATTTGCAGAAAA+TGG - chr4.4:32012532-32012551 MS.gene006617:CDS 25.0%
! TTACTTTCAATCAATCTCTT+TGG - chr4.4:32012944-32012963 MS.gene006617:intron 25.0%
AACCTTTCAATATCATGGAA+AGG - chr4.4:32012673-32012692 MS.gene006617:CDS 30.0%
ATGATCAAAGGTAAAAAAGG+AGG - chr4.4:32013001-32013020 MS.gene006617:intron 30.0%
CAGTTAACCTTTCAATATCA+TGG - chr4.4:32012668-32012687 MS.gene006617:CDS 30.0%
GAACAATTGAGTGAGTTTAT+TGG - chr4.4:32013241-32013260 MS.gene006617:CDS 30.0%
GCAATGATCAAAGGTAAAAA+AGG - chr4.4:32012998-32013017 MS.gene006617:intron 30.0%
TACAATGTCAAAATCAGCTA+TGG - chr4.4:32013084-32013103 MS.gene006617:CDS 30.0%
TGATTCAATGTCAGATTCTT+TGG + chr4.4:32012647-32012666 None:intergenic 30.0%
TGTTGAACATTATGTCTAAG+TGG + chr4.4:32012699-32012718 None:intergenic 30.0%
! AACGAGATTACTAACCTTTT+TGG + chr4.4:32012390-32012409 None:intergenic 30.0%
! ATGAATGCAAGTTTGCTTAA+AGG - chr4.4:32013265-32013284 MS.gene006617:CDS 30.0%
! CTCAAAATTTAGCTCCAAAA+AGG - chr4.4:32012373-32012392 MS.gene006617:CDS 30.0%
! TGAATGCAAGTTTGCTTAAA+GGG - chr4.4:32013266-32013285 MS.gene006617:CDS 30.0%
!!! GAAATGTTTTTAAGGCTACT+AGG - chr4.4:32012460-32012479 MS.gene006617:CDS 30.0%
AAGCATAACAACACTTGACA+TGG - chr4.4:32012907-32012926 MS.gene006617:intron 35.0%
ATGTCAAAATCAGCTATGGA+TGG - chr4.4:32013088-32013107 MS.gene006617:CDS 35.0%
GACATAATGTTCAACAATGC+AGG - chr4.4:32012703-32012722 MS.gene006617:CDS 35.0%
GCTCATAATCTTTCAGTTGA+TGG - chr4.4:32013361-32013380 MS.gene006617:intron 35.0%
GTTTGGATATTTAGGCTCAT+CGG - chr4.4:32012837-32012856 MS.gene006617:CDS 35.0%
TCTACATTCTGAATCATACG+TGG + chr4.4:32012351-32012370 None:intergenic 35.0%
!! AATCTCTTTGGAACAATCCA+TGG - chr4.4:32012956-32012975 MS.gene006617:intron 35.0%
!! CATAATCTTTCAGTTGATGG+TGG - chr4.4:32013364-32013383 MS.gene006617:intron 35.0%
!!! GTTTTTAAGGCTACTAGGTA+AGG - chr4.4:32012465-32012484 MS.gene006617:CDS 35.0%
!!! TTTTTGGCTAGTGATGAATC+TGG - chr4.4:32013328-32013347 MS.gene006617:intron 35.0%
AAGGTAGCAGTTATAACAGG+CGG - chr4.4:32012484-32012503 MS.gene006617:CDS 40.0%
AGGGTTGCTGAATCAATTGA+TGG - chr4.4:32012598-32012617 MS.gene006617:CDS 40.0%
ATTTAGGCTCATCGGATCAT+TGG - chr4.4:32012845-32012864 MS.gene006617:CDS 40.0%
GCTGCAAAAGCAATGATCAA+AGG - chr4.4:32012989-32013008 MS.gene006617:intron 40.0%
GGCCTTTCCATGATATTGAA+AGG + chr4.4:32012678-32012697 None:intergenic 40.0%
GGTAAGGTAGCAGTTATAAC+AGG - chr4.4:32012481-32012500 MS.gene006617:CDS 40.0%
GTTAATTGTGTTTCTCCGCA+CGG - chr4.4:32013157-32013176 MS.gene006617:CDS 40.0%
TCCTTCATAGCCTGCAATTA+CGG + chr4.4:32012885-32012904 None:intergenic 40.0%
TTCAACAATGCAGGAATTGC+AGG - chr4.4:32012712-32012731 MS.gene006617:CDS 40.0%
TTGCAGCATGTTTGATTCCA+TGG + chr4.4:32012976-32012995 None:intergenic 40.0%
! AACAACTGATGATGTTGCAC+AGG - chr4.4:32013297-32013316 MS.gene006617:intron 40.0%
! ATCAATTGATTCAGCAACCC+TGG + chr4.4:32012599-32012618 None:intergenic 40.0%
! GCTGATGTTCTAGATGAAGA+AGG - chr4.4:32012571-32012590 MS.gene006617:CDS 40.0%
!! GCATTCAAAAGCATCTCAGA+AGG + chr4.4:32013187-32013206 None:intergenic 40.0%
!! GGATGGATTAATGAGAAGTG+CGG - chr4.4:32013105-32013124 MS.gene006617:CDS 40.0%
AACAATGCAGGAATTGCAGG+TGG - chr4.4:32012715-32012734 MS.gene006617:CDS 45.0%
ACAATGCAGGAATTGCAGGT+GGG - chr4.4:32012716-32012735 MS.gene006617:CDS 45.0%
CCTTCATAGCCTGCAATTAC+GGG + chr4.4:32012884-32012903 None:intergenic 45.0%
TCAAGTGCAGCTGCAACTAT+AGG - chr4.4:32013040-32013059 MS.gene006617:intron 45.0%
! ATAGGTGGATTCGCTTCACA+TGG - chr4.4:32013058-32013077 MS.gene006617:CDS 45.0%
! GCAAGTTTGCTTAAAGGGAG+AGG - chr4.4:32013271-32013290 MS.gene006617:CDS 45.0%
! TGCACAGGCTGTTCTGTTTT+TGG - chr4.4:32013312-32013331 MS.gene006617:intron 45.0%
!! GTTTTAACGCCCGTAATTGC+AGG - chr4.4:32012872-32012891 MS.gene006617:intron 45.0%
!! TCTAGATGAAGAAGGCACCA+GGG - chr4.4:32012579-32012598 MS.gene006617:CDS 45.0%
!! TTCTAGATGAAGAAGGCACC+AGG - chr4.4:32012578-32012597 MS.gene006617:CDS 45.0%
AGTGCAGCTGCAACTATAGG+TGG - chr4.4:32013043-32013062 MS.gene006617:intron 50.0%
CCCGTAATTGCAGGCTATGA+AGG - chr4.4:32012881-32012900 MS.gene006617:intron 50.0%
GTTATAACAGGCGGTGCAAG+AGG - chr4.4:32012493-32012512 MS.gene006617:CDS 50.0%
! AGAAGTGCGGCGTGTGAATT+AGG - chr4.4:32013118-32013137 MS.gene006617:CDS 50.0%
! GGCTCATCGGATCATTGGTT+TGG - chr4.4:32012850-32012869 MS.gene006617:CDS 50.0%
ACAGGCGGTGCAAGAGGAAT+TGG - chr4.4:32012499-32012518 MS.gene006617:CDS 55.0%
ATCTCAGAAGGAACGCCGTG+CGG + chr4.4:32013175-32013194 None:intergenic 55.0%
GGAATTGCAGGTGGGTGCAA+TGG - chr4.4:32012724-32012743 MS.gene006617:CDS 55.0%
TGCAGGTGGGTGCAATGGAA+TGG - chr4.4:32012729-32012748 MS.gene006617:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 32012342 32013438 32012342 ID=MS.gene006617
chr4.4 mRNA 32012342 32013438 32012342 ID=MS.gene006617.t1;Parent=MS.gene006617
chr4.4 exon 32013386 32013438 32013386 ID=MS.gene006617.t1.exon1;Parent=MS.gene006617.t1
chr4.4 CDS 32013386 32013438 32013386 ID=cds.MS.gene006617.t1;Parent=MS.gene006617.t1
chr4.4 exon 32013047 32013306 32013047 ID=MS.gene006617.t1.exon2;Parent=MS.gene006617.t1
chr4.4 CDS 32013047 32013306 32013047 ID=cds.MS.gene006617.t1;Parent=MS.gene006617.t1
chr4.4 exon 32012342 32012886 32012342 ID=MS.gene006617.t1.exon3;Parent=MS.gene006617.t1
chr4.4 CDS 32012342 32012886 32012342 ID=cds.MS.gene006617.t1;Parent=MS.gene006617.t1
Gene Sequence

>MS.gene006617

ATGGAGCCACGTATGATTCAGAATGTAGAATCTCAAAATTTAGCTCCAAAAAGGTTAGTAATCTCGTTGATATATAGTCTCATTTACCTATCATATGATATTAAATTTCTTTTCTTTTGAAATGTTTTTAAGGCTACTAGGTAAGGTAGCAGTTATAACAGGCGGTGCAAGAGGAATTGGTGCTGCAACAGCAAAATTATTTGCAGAAAATGGAGCACATGTCATCATTGCTGATGTTCTAGATGAAGAAGGCACCAGGGTTGCTGAATCAATTGATGGTCTCTACATACACTGTGATGTATCCAAAGAATCTGACATTGAATCAGCAGTTAACCTTTCAATATCATGGAAAGGCCACTTAGACATAATGTTCAACAATGCAGGAATTGCAGGTGGGTGCAATGGAATGGTTTATTTTGAATTTTCGAAGAAAAAAGTGAATTAGTTTTTTTTTTCTTGACAAAAAAAAAAAAGTGAATTAGTTAAAATAGTTTTGTTTGGATATTTAGGCTCATCGGATCATTGGTTTGGTTTTAACGCCCGTAATTGCAGGCTATGAAGGAAGAAGCATAACAACACTTGACATGGAAAAACTGACTCATTTACTTTCAATCAATCTCTTTGGAACAATCCATGGAATCAAACATGCTGCAAAAGCAATGATCAAAGGTAAAAAAGGAGGATCAATTATTTGTACATCAAGTGCAGCTGCAACTATAGGTGGATTCGCTTCACATGGTTATACAATGTCAAAATCAGCTATGGATGGATTAATGAGAAGTGCGGCGTGTGAATTAGGCGTTCATTTGATTCGTGTTAATTGTGTTTCTCCGCACGGCGTTCCTTCTGAGATGCTTTTGAATGCTTTTAAATGTTACGGTGAAGTTGATATGACTAGTGAACAATTGAGTGAGTTTATTGGTATGAATGCAAGTTTGCTTAAAGGGAGAGGTGCAACAACTGATGATGTTGCACAGGCTGTTCTGTTTTTGGCTAGTGATGAATCTGGATTTGTAACTGCTCATAATCTTTCAGTTGATGGTGGAATCACATCTGCTAATAGTGTTATGAGTTTCATCTACCAAGATCCTAAGTGA
Protein sequence

>MS.gene006617.t1

MEPRMIQNVESQNLAPKRLLGKVAVITGGARGIGAATAKLFAENGAHVIIADVLDEEGTRVAESIDGLYIHCDVSKESDIESAVNLSISWKGHLDIMFNNAGIAGYEGRSITTLDMEKLTHLLSINLFGTIHGIKHAAKAMIKGKKGGSIICTSSAAATIGGFASHGYTMSKSAMDGLMRSAACELGVHLIRVNCVSPHGVPSEMLLNAFKCYGEVDMTSEQLSEFIGMNASLLKGRGATTDDVAQAVLFLASDESGFVTAHNLSVDGGITSANSVMSFIYQDPK