AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene52742

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52742.t1 MTR_7g094510 97.647 255 6 0 1 255 1 255 0.0 506
MS.gene52742.t1 MTR_7g094520 83.794 253 41 0 3 255 8 260 1.20e-155 433
MS.gene52742.t1 MTR_1g068955 70.400 250 73 1 4 252 12 261 1.50e-121 348
MS.gene52742.t1 MTR_3g085740 35.458 251 155 5 6 255 75 319 7.95e-38 135
MS.gene52742.t1 MTR_3g068070 32.946 258 151 10 6 254 15 259 1.41e-30 115
MS.gene52742.t1 MTR_3g068085 32.046 259 152 10 6 254 15 259 1.18e-29 112
MS.gene52742.t1 MTR_4g064887 33.725 255 151 9 6 253 15 258 1.21e-28 109
MS.gene52742.t1 MTR_3g068065 32.812 256 154 9 6 254 17 261 2.36e-28 109
MS.gene52742.t1 MTR_7g071680 33.333 273 148 10 6 253 29 292 2.06e-27 107
MS.gene52742.t1 MTR_7g063260 31.274 259 158 6 6 254 16 264 5.53e-27 105
MS.gene52742.t1 MTR_3g068175 32.432 259 149 11 6 253 17 260 6.77e-27 105
MS.gene52742.t1 MTR_6g023610 30.620 258 167 5 4 255 11 262 6.95e-27 105
MS.gene52742.t1 MTR_7g063320 30.888 259 161 8 6 255 15 264 1.46e-26 104
MS.gene52742.t1 MTR_7g063270 31.538 260 155 8 6 254 16 263 2.02e-26 103
MS.gene52742.t1 MTR_6g023590 30.682 264 159 7 3 254 10 261 3.23e-26 103
MS.gene52742.t1 MTR_6g023910 31.154 260 167 6 2 255 9 262 1.56e-25 101
MS.gene52742.t1 MTR_6g023600 30.116 259 167 6 3 254 10 261 2.13e-25 101
MS.gene52742.t1 MTR_7g063360 31.641 256 161 6 6 254 16 264 2.17e-25 101
MS.gene52742.t1 MTR_7g063390 30.980 255 164 6 6 254 16 264 2.54e-25 100
MS.gene52742.t1 MTR_4g064883 31.200 250 164 6 6 253 14 257 3.96e-25 100
MS.gene52742.t1 MTR_6g023600 30.116 259 161 6 3 254 10 255 5.26e-25 100
MS.gene52742.t1 MTR_3g068155 30.315 254 161 9 6 253 19 262 5.98e-25 100
MS.gene52742.t1 MTR_3g068175 31.939 263 149 12 6 253 17 264 9.99e-25 99.8
MS.gene52742.t1 MTR_6g081270 70.769 65 19 0 28 92 29 93 1.02e-24 94.7
MS.gene52742.t1 MTR_1196s0010 32.411 253 152 7 8 255 276 514 1.64e-24 102
MS.gene52742.t1 MTR_7g107670 30.153 262 159 9 6 254 33 283 6.28e-24 97.8
MS.gene52742.t1 MTR_7g063330 29.921 254 167 6 6 254 15 262 8.69e-24 97.1
MS.gene52742.t1 MTR_6g023990 30.769 260 166 7 2 254 10 262 2.24e-23 95.9
MS.gene52742.t1 MTR_4g131740 27.843 255 176 5 6 255 40 291 3.02e-22 93.2
MS.gene52742.t1 MTR_6g023950 29.771 262 164 7 3 254 10 261 7.44e-22 91.7
MS.gene52742.t1 MTR_7g105580 29.740 269 141 9 1 254 1 236 1.48e-21 90.9
MS.gene52742.t1 MTR_3g020670 31.439 264 156 8 6 254 16 269 2.32e-21 90.9
MS.gene52742.t1 MTR_4g132850 29.719 249 166 7 6 253 7 247 3.19e-21 89.7
MS.gene52742.t1 MTR_7g083870 29.502 261 163 8 6 254 35 286 2.57e-20 88.2
MS.gene52742.t1 MTR_4g058810 29.924 264 161 11 5 253 7 261 2.64e-20 87.8
MS.gene52742.t1 MTR_4g078630 28.846 260 164 5 6 253 19 269 3.58e-20 87.4
MS.gene52742.t1 MTR_7g113650 28.352 261 166 7 6 255 40 290 3.63e-20 87.8
MS.gene52742.t1 MTR_7g105590 30.348 201 132 3 1 199 1 195 1.23e-19 84.3
MS.gene52742.t1 MTR_4g058840 29.231 260 163 9 6 253 11 261 3.43e-19 84.7
MS.gene52742.t1 MTR_4g058820 29.231 260 163 9 6 253 11 261 3.43e-19 84.7
MS.gene52742.t1 MTR_1g082760 29.389 262 162 7 6 255 40 290 9.66e-19 84.0
MS.gene52742.t1 MTR_1g051165 29.434 265 161 9 6 253 14 269 3.11e-18 82.0
MS.gene52742.t1 MTR_4g052300 29.545 264 149 12 6 253 8 250 4.03e-18 81.6
MS.gene52742.t1 MTR_7g105460 30.078 256 163 7 6 254 13 259 4.06e-18 81.6
MS.gene52742.t1 MTR_4g052320 27.953 254 169 7 6 254 8 252 9.00e-18 80.5
MS.gene52742.t1 MTR_8g442750 30.970 268 148 9 6 253 14 264 9.47e-18 81.3
MS.gene52742.t1 MTR_4g052350 27.941 272 161 9 1 253 1 256 1.43e-17 80.1
MS.gene52742.t1 MTR_4g052340 26.966 267 168 6 1 252 1 255 2.70e-17 79.3
MS.gene52742.t1 MTR_4g064887 33.831 201 116 8 6 200 15 204 7.31e-17 77.4
MS.gene52742.t1 MTR_7g063270 37.374 99 58 1 160 254 116 214 1.16e-15 73.9
MS.gene52742.t1 MTR_4g064883 31.122 196 128 5 6 200 14 203 1.90e-15 73.2
MS.gene52742.t1 MTR_4g134660 29.592 196 131 5 8 201 8 198 2.33e-14 70.9
MS.gene52742.t1 MTR_4g066050 28.856 201 128 6 8 201 26 218 5.02e-14 70.1
MS.gene52742.t1 MTR_7g080410 27.320 194 138 3 6 198 38 229 6.57e-14 70.5
MS.gene52742.t1 MTR_7g080410 27.320 194 138 3 6 198 38 229 8.32e-14 70.1
MS.gene52742.t1 MTR_3g113870 28.780 205 134 7 14 216 29 223 9.92e-14 68.9
MS.gene52742.t1 MTR_7g110130 26.996 263 173 7 1 254 1 253 1.20e-12 66.2
MS.gene52742.t1 MTR_7g110140 27.027 259 177 7 1 254 1 252 2.51e-12 65.5
MS.gene52742.t1 MTR_7g105570 31.579 171 105 5 92 254 50 216 1.10e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene52742.t1 AT3G03980 70.656 259 69 1 4 255 12 270 8.01e-130 368
MS.gene52742.t1 AT5G18210 68.775 253 76 1 6 255 8 260 1.16e-125 357
MS.gene52742.t1 AT5G18210 70.339 236 67 1 6 238 8 243 1.48e-116 335
MS.gene52742.t1 AT3G04000 61.628 258 91 1 4 253 12 269 2.04e-114 329
MS.gene52742.t1 AT4G13180 58.268 254 106 0 2 255 9 262 3.62e-110 318
MS.gene52742.t1 AT2G29290 33.600 250 158 6 6 253 7 250 3.45e-32 119
MS.gene52742.t1 AT5G06060 32.806 253 158 8 6 254 9 253 4.55e-32 119
MS.gene52742.t1 AT1G24360 32.129 249 162 5 6 253 74 316 3.05e-31 117
MS.gene52742.t1 AT2G29260 31.837 245 159 6 11 253 73 311 4.06e-28 109
MS.gene52742.t1 AT2G29360 32.794 247 156 6 11 254 21 260 1.28e-27 107
MS.gene52742.t1 AT2G29290 35.979 189 116 5 67 253 48 233 8.73e-27 104
MS.gene52742.t1 AT2G29350 33.198 247 152 8 11 253 20 257 2.29e-26 103
MS.gene52742.t1 AT2G29150 33.466 251 156 7 6 253 16 258 2.42e-26 103
MS.gene52742.t1 AT2G30670 32.271 251 160 5 6 253 7 250 5.66e-26 102
MS.gene52742.t1 AT3G51680 34.962 266 151 10 6 253 32 293 1.18e-25 102
MS.gene52742.t1 AT2G29310 31.102 254 161 6 6 254 7 251 2.33e-24 98.6
MS.gene52742.t1 AT1G07440 30.709 254 159 8 6 253 12 254 2.73e-24 98.2
MS.gene52742.t1 AT3G55310 29.921 254 169 7 6 253 17 267 9.03e-24 97.4
MS.gene52742.t1 AT2G29370 33.202 253 157 8 6 254 16 260 1.08e-23 96.7
MS.gene52742.t1 AT2G29300 31.496 254 159 7 6 253 7 251 3.61e-23 95.1
MS.gene52742.t1 AT2G29320 31.496 254 159 7 6 253 13 257 4.03e-23 95.1
MS.gene52742.t1 AT2G29300 31.496 254 159 7 6 253 7 251 6.17e-23 95.1
MS.gene52742.t1 AT3G46170 29.134 254 171 7 6 253 26 276 7.14e-23 95.1
MS.gene52742.t1 AT1G54870 29.688 256 169 6 6 255 84 334 1.32e-22 95.1
MS.gene52742.t1 AT1G52340 28.736 261 170 4 6 254 18 274 1.34e-22 94.4
MS.gene52742.t1 AT3G26760 27.341 267 171 7 2 254 32 289 1.34e-22 94.4
MS.gene52742.t1 AT1G54870 29.688 256 169 6 6 255 82 332 1.41e-22 95.1
MS.gene52742.t1 AT3G55290 28.740 254 172 7 6 253 17 267 2.02e-22 93.6
MS.gene52742.t1 AT3G55290 28.740 254 172 7 6 253 18 268 2.17e-22 93.6
MS.gene52742.t1 AT2G29350 32.821 195 127 4 60 253 28 219 4.38e-22 91.7
MS.gene52742.t1 AT3G05260 28.906 256 170 6 6 255 37 286 5.99e-22 92.4
MS.gene52742.t1 AT1G07450 29.457 258 159 7 6 254 8 251 7.42e-22 91.7
MS.gene52742.t1 AT1G63380 29.412 255 170 7 6 253 15 266 9.89e-22 91.7
MS.gene52742.t1 AT1G63380 29.412 255 170 7 6 253 22 273 1.13e-21 91.7
MS.gene52742.t1 AT1G63380 29.412 255 170 7 6 253 19 270 1.14e-21 91.7
MS.gene52742.t1 AT1G63380 29.412 255 170 7 6 253 17 268 1.27e-21 91.7
MS.gene52742.t1 AT2G17845 29.183 257 170 8 6 253 47 300 1.31e-21 92.0
MS.gene52742.t1 AT2G47130 30.385 260 166 7 1 254 1 251 5.68e-21 89.4
MS.gene52742.t1 AT1G62610 30.233 258 164 10 6 253 13 264 7.32e-21 89.4
MS.gene52742.t1 AT1G62610 30.233 258 164 10 6 253 19 270 8.72e-21 89.4
MS.gene52742.t1 AT1G62610 30.233 258 164 10 6 253 14 265 8.85e-21 89.0
MS.gene52742.t1 AT1G62610 30.233 258 164 10 6 253 15 266 9.17e-21 89.0
MS.gene52742.t1 AT2G29330 30.078 256 159 7 6 253 7 250 1.09e-20 88.6
MS.gene52742.t1 AT2G47120 29.434 265 161 6 1 254 1 250 2.40e-20 87.4
MS.gene52742.t1 AT2G29340 30.980 255 158 8 6 253 7 250 7.82e-20 86.3
MS.gene52742.t1 AT2G29340 30.980 255 158 8 6 253 7 250 1.92e-19 85.9
MS.gene52742.t1 AT3G29250 30.038 263 164 9 1 254 1 252 2.50e-19 84.7
MS.gene52742.t1 AT2G29310 31.606 193 121 5 67 254 63 249 3.72e-19 84.3
MS.gene52742.t1 AT3G29250 30.000 260 168 8 1 254 37 288 4.43e-19 84.7
MS.gene52742.t1 AT2G47120 29.231 260 158 6 6 254 7 251 6.34e-19 83.6
MS.gene52742.t1 AT3G29260 29.231 260 169 7 1 254 1 251 3.63e-18 81.6
MS.gene52742.t1 AT2G29320 32.124 193 119 6 67 253 53 239 6.08e-18 80.9
MS.gene52742.t1 AT3G29250 29.804 255 165 8 6 254 44 290 8.93e-18 81.3
MS.gene52742.t1 AT4G05530 28.000 250 169 7 6 253 9 249 5.07e-17 78.6
MS.gene52742.t1 AT4G03140 26.154 260 172 5 6 254 78 328 1.12e-16 78.6
MS.gene52742.t1 AT3G26770 28.185 259 167 7 6 253 41 291 1.46e-16 77.8
MS.gene52742.t1 AT3G42960 27.376 263 167 7 6 254 8 260 1.90e-15 74.3
MS.gene52742.t1 AT3G12800 28.958 259 166 8 6 253 10 261 6.04e-15 73.2
MS.gene52742.t1 AT2G29310 30.256 195 131 3 6 200 7 196 1.01e-14 71.2
MS.gene52742.t1 AT2G47140 27.799 259 175 7 1 254 1 252 1.01e-14 72.0
MS.gene52742.t1 AT2G29320 30.928 194 128 4 6 198 13 201 1.88e-13 67.8
MS.gene52742.t1 AT2G29350 31.443 194 126 6 11 203 20 207 7.15e-13 66.6
MS.gene52742.t1 AT5G50600 29.717 212 137 8 6 212 45 249 1.11e-12 67.4
MS.gene52742.t1 AT5G50700 29.717 212 137 8 6 212 45 249 1.11e-12 67.4
MS.gene52742.t1 AT3G03330 26.904 197 136 4 6 198 41 233 1.80e-11 63.5

Find 78 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAAATTATTCGTGTTAA+TGG 0.232122 7.2:+15131001 MS.gene52742:CDS
ATCATGAACATAAACTTAAA+AGG 0.315108 7.2:+15130620 MS.gene52742:CDS
GATGCTTCTGAATGGGTTAA+TGG 0.361225 7.2:+15130980 MS.gene52742:CDS
GTTCGCAATGGTAGGGTACT+TGG 0.373043 7.2:-15130573 None:intergenic
AAAGATGTTGCTCCTGTTGT+TGG 0.383642 7.2:+15130944 MS.gene52742:CDS
ACCGGTTCCTCCCGCGGAAT+CGG 0.391420 7.2:+15130308 MS.gene52742:CDS
TGGCTACTGATGCTTCTGAA+TGG 0.400860 7.2:+15130972 MS.gene52742:CDS
GCGAAGGAGCTGAAGGGAAC+GGG 0.403109 7.2:+15130800 MS.gene52742:CDS
AGGCGATTTGAAGGCTTCTT+CGG 0.403502 7.2:-15130513 None:intergenic
GGCTACTGATGCTTCTGAAT+GGG 0.406073 7.2:+15130973 MS.gene52742:CDS
ACCGATTCCGCGGGAGGAAC+CGG 0.409076 7.2:-15130309 None:intergenic
ACTGAAGAAGAGAGTCCGTT+TGG 0.428673 7.2:+15130905 MS.gene52742:CDS
GAGAGTCCGTTTGGGAGGCT+TGG 0.433310 7.2:+15130914 MS.gene52742:CDS
TACTGCAAATTGCGTGGCAC+CGG 0.434890 7.2:+15130826 MS.gene52742:CDS
GGTTTGGTTGGCGTTGATCT+CGG 0.453000 7.2:-15130420 None:intergenic
TGATGGGAAAACGGAGGAGA+TGG 0.454882 7.2:+15130874 MS.gene52742:CDS
GATGTGAACAGGCGATTTGA+AGG 0.457360 7.2:-15130522 None:intergenic
CAAATCGCCTGTTCACATCC+TGG 0.462961 7.2:+15130526 MS.gene52742:CDS
CGTTTGAAGCGAGGCGGAGG+AGG 0.473206 7.2:+15130674 MS.gene52742:CDS
CGCCGAGTGAAGCAAGGTGG+AGG 0.477214 7.2:-15130343 None:intergenic
CGCTGACGTGTCCGATCCCG+CGG 0.494220 7.2:+15130466 MS.gene52742:CDS
CTCTTTACCGATTCCGCGGG+AGG 0.494710 7.2:-15130315 None:intergenic
CTGAAGAAGAGAGTCCGTTT+GGG 0.498966 7.2:+15130906 MS.gene52742:CDS
GAGTTAACCAGGATGTGAAC+AGG 0.500872 7.2:-15130533 None:intergenic
TGATGGCTCGTAAAGTGGTT+TGG 0.501317 7.2:-15130436 None:intergenic
ATCAGCATGGTTGGAGTTGG+AGG 0.501568 7.2:-15130387 None:intergenic
GGCGTTGATCTCGGCGGCGA+CGG 0.508524 7.2:-15130411 None:intergenic
GGAATCAGCATGGTTGGAGT+TGG 0.508679 7.2:-15130390 None:intergenic
ATCTCCGTTGCAATCGGTCC+CGG 0.509743 7.2:-15130845 None:intergenic
CACATCCTGGTTAACTCAGC+CGG 0.511760 7.2:+15130539 MS.gene52742:CDS
AGCGAAGGAGCTGAAGGGAA+CGG 0.513295 7.2:+15130799 MS.gene52742:CDS
TTTGACATCGTCATTGGTGG+CGG 0.523717 7.2:+15130709 MS.gene52742:CDS
GGCTCGTAAAGTGGTTTGGT+TGG 0.523877 7.2:-15130432 None:intergenic
GCCCTCCACCTTGCTTCACT+CGG 0.524186 7.2:+15130341 MS.gene52742:CDS
CACGTCAGCGCGGACGGTGA+TGG 0.524209 7.2:-15130453 None:intergenic
ACGGTTGTGTTCGCAATGGT+AGG 0.533441 7.2:-15130581 None:intergenic
GATTCTAGCGAAGGAGCTGA+AGG 0.535245 7.2:+15130793 MS.gene52742:CDS
GGACGCCGGCTGAGTTAACC+AGG 0.537594 7.2:-15130544 None:intergenic
GACCGAGTTGCAATTGTCAC+CGG 0.540987 7.2:+15130290 MS.gene52742:CDS
GACGGTGATGGCTCGTAAAG+TGG 0.542189 7.2:-15130441 None:intergenic
ACTGCAAATTGCGTGGCACC+GGG 0.546685 7.2:+15130827 MS.gene52742:CDS
ATCGGACACGTCAGCGCGGA+CGG 0.549310 7.2:-15130459 None:intergenic
GCGGCGTTGAAGATTTGCAT+GGG 0.552959 7.2:+15130728 MS.gene52742:CDS
ATTGTCACCGGTTCCTCCCG+CGG 0.553481 7.2:+15130302 MS.gene52742:CDS
GGCGACGGAATCAGCATGGT+TGG 0.553601 7.2:-15130396 None:intergenic
AATCGTTTGAAGCGAGGCGG+AGG 0.558244 7.2:+15130671 MS.gene52742:CDS
GATACGATCGAAGCTTTCAA+CGG 0.559331 7.2:-15130600 None:intergenic
GTTTCACCAAGCCTCCCAAA+CGG 0.563724 7.2:-15130920 None:intergenic
CGATTTGAAGGCTTCTTCGG+CGG 0.570868 7.2:-15130510 None:intergenic
CGGTTGTGTTCGCAATGGTA+GGG 0.574004 7.2:-15130580 None:intergenic
CAAATTATTCGTGTTAATGG+TGG 0.579717 7.2:+15131004 MS.gene52742:CDS
GATCTCTTTACCGATTCCGC+GGG 0.582675 7.2:-15130318 None:intergenic
GTACTTGGCGTCGAGGACGC+CGG 0.586113 7.2:-15130558 None:intergenic
GGCGGCGTTGAAGATTTGCA+TGG 0.588938 7.2:+15130727 MS.gene52742:CDS
GGGAGCTTACACAGCTTCGA+AGG 0.590196 7.2:+15130748 MS.gene52742:CDS
CTTCGCTAGAATCTTCGTCA+TGG 0.592330 7.2:-15130783 None:intergenic
GTCTTGCGCCGAGTGAAGCA+AGG 0.594132 7.2:-15130349 None:intergenic
GTTTGAAGCGAGGCGGAGGA+GGG 0.595125 7.2:+15130675 MS.gene52742:CDS
AAGAAGAGAGTCCGTTTGGG+AGG 0.597329 7.2:+15130909 MS.gene52742:CDS
CGAAGGAGCTGAAGGGAACG+GGG 0.599828 7.2:+15130801 MS.gene52742:CDS
GCCGAGTGAAGCAAGGTGGA+GGG 0.608469 7.2:-15130342 None:intergenic
CGATCTCTTTACCGATTCCG+CGG 0.612444 7.2:-15130319 None:intergenic
CATGACGAAGATTCTAGCGA+AGG 0.622415 7.2:+15130784 MS.gene52742:CDS
TGGTAGGGTACTTGGCGTCG+AGG 0.626144 7.2:-15130565 None:intergenic
GCATCGAATCGTTTGAAGCG+AGG 0.634296 7.2:+15130665 MS.gene52742:CDS
TTCAACGGTTGTGTTCGCAA+TGG 0.634920 7.2:-15130585 None:intergenic
GCTGACGTGTCCGATCCCGC+GGG 0.637933 7.2:+15130467 MS.gene52742:CDS
GGGGATTACTGCAAATTGCG+TGG 0.639109 7.2:+15130820 MS.gene52742:CDS
CGGCGGCGACGGAATCAGCA+TGG 0.639400 7.2:-15130400 None:intergenic
AACCGGTGACAATTGCAACT+CGG 0.641340 7.2:-15130292 None:intergenic
ATTCTAGCGAAGGAGCTGAA+GGG 0.648988 7.2:+15130794 MS.gene52742:CDS
AGGAGCGTTTCTCTGCGCGA+AGG 0.650712 7.2:+15130640 MS.gene52742:CDS
ATTGCAACTCGGTCTTGAAG+CGG 0.659095 7.2:-15130281 None:intergenic
GGCACCGGGACCGATTGCAA+CGG 0.660312 7.2:+15130841 MS.gene52742:CDS
TTGCGCCGAGTGAAGCAAGG+TGG 0.675152 7.2:-15130346 None:intergenic
TTGGTTGGCGTTGATCTCGG+CGG 0.684094 7.2:-15130417 None:intergenic
TCGAATCGTTTGAAGCGAGG+CGG 0.701338 7.2:+15130668 MS.gene52742:CDS
CGGGATCGGACACGTCAGCG+CGG 0.767055 7.2:-15130463 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATGAACATAAACTTAAA+AGG + chr7.2:15130620-15130639 MS.gene52742:CDS 20.0%
CAAATTATTCGTGTTAATGG+TGG + chr7.2:15131004-15131023 MS.gene52742:CDS 30.0%
GGTCAAATTATTCGTGTTAA+TGG + chr7.2:15131001-15131020 MS.gene52742:CDS 30.0%
!!! GATGTTTTTTGATGGGAAAA+CGG + chr7.2:15130865-15130884 MS.gene52742:CDS 30.0%
AAAAACATCTCCGTTGCAAT+CGG - chr7.2:15130854-15130873 None:intergenic 35.0%
! CATACTTTTGACATCGTCAT+TGG + chr7.2:15130703-15130722 MS.gene52742:CDS 35.0%
!!! CAACGGAGATGTTTTTTGAT+GGG + chr7.2:15130858-15130877 MS.gene52742:CDS 35.0%
AAAGATGTTGCTCCTGTTGT+TGG + chr7.2:15130944-15130963 MS.gene52742:CDS 40.0%
GATACGATCGAAGCTTTCAA+CGG - chr7.2:15130603-15130622 None:intergenic 40.0%
GTAGCCAAAAAACCAACAAC+AGG - chr7.2:15130959-15130978 None:intergenic 40.0%
! ACTTTTGACATCGTCATTGG+TGG + chr7.2:15130706-15130725 MS.gene52742:CDS 40.0%
!! GATGCTTCTGAATGGGTTAA+TGG + chr7.2:15130980-15130999 MS.gene52742:CDS 40.0%
!!! GCAACGGAGATGTTTTTTGA+TGG + chr7.2:15130857-15130876 MS.gene52742:CDS 40.0%
!!! GTTTTTTGATGGGAAAACGG+AGG + chr7.2:15130868-15130887 MS.gene52742:CDS 40.0%
!!! TGCTCCTGTTGTTGGTTTTT+TGG + chr7.2:15130952-15130971 MS.gene52742:CDS 40.0%
AACCGGTGACAATTGCAACT+CGG - chr7.2:15130295-15130314 None:intergenic 45.0%
ACTGAAGAAGAGAGTCCGTT+TGG + chr7.2:15130905-15130924 MS.gene52742:CDS 45.0%
AGGCGATTTGAAGGCTTCTT+CGG - chr7.2:15130516-15130535 None:intergenic 45.0%
ATTCTAGCGAAGGAGCTGAA+GGG + chr7.2:15130794-15130813 MS.gene52742:CDS 45.0%
ATTGCAACTCGGTCTTGAAG+CGG - chr7.2:15130284-15130303 None:intergenic 45.0%
CATGACGAAGATTCTAGCGA+AGG + chr7.2:15130784-15130803 MS.gene52742:CDS 45.0%
CTGAAGAAGAGAGTCCGTTT+GGG + chr7.2:15130906-15130925 MS.gene52742:CDS 45.0%
CTTCGCTAGAATCTTCGTCA+TGG - chr7.2:15130786-15130805 None:intergenic 45.0%
GAGTTAACCAGGATGTGAAC+AGG - chr7.2:15130536-15130555 None:intergenic 45.0%
GATGTGAACAGGCGATTTGA+AGG - chr7.2:15130525-15130544 None:intergenic 45.0%
GGCTACTGATGCTTCTGAAT+GGG + chr7.2:15130973-15130992 MS.gene52742:CDS 45.0%
TGATGGCTCGTAAAGTGGTT+TGG - chr7.2:15130439-15130458 None:intergenic 45.0%
TGGCTACTGATGCTTCTGAA+TGG + chr7.2:15130972-15130991 MS.gene52742:CDS 45.0%
TTCAACGGTTGTGTTCGCAA+TGG - chr7.2:15130588-15130607 None:intergenic 45.0%
TTTGACATCGTCATTGGTGG+CGG + chr7.2:15130709-15130728 MS.gene52742:CDS 45.0%
! AAGAGAGATTTTACACCCGC+GGG - chr7.2:15130485-15130504 None:intergenic 45.0%
! GAAGAGAGATTTTACACCCG+CGG - chr7.2:15130486-15130505 None:intergenic 45.0%
AAGAAGAGAGTCCGTTTGGG+AGG + chr7.2:15130909-15130928 MS.gene52742:CDS 50.0%
ACGGTTGTGTTCGCAATGGT+AGG - chr7.2:15130584-15130603 None:intergenic 50.0%
ATCAGCATGGTTGGAGTTGG+AGG - chr7.2:15130390-15130409 None:intergenic 50.0%
CAAATCGCCTGTTCACATCC+TGG + chr7.2:15130526-15130545 MS.gene52742:CDS 50.0%
CACATCCTGGTTAACTCAGC+CGG + chr7.2:15130539-15130558 MS.gene52742:CDS 50.0%
CGATTTGAAGGCTTCTTCGG+CGG - chr7.2:15130513-15130532 None:intergenic 50.0%
CGGTTGTGTTCGCAATGGTA+GGG - chr7.2:15130583-15130602 None:intergenic 50.0%
GACCGAGTTGCAATTGTCAC+CGG + chr7.2:15130290-15130309 MS.gene52742:CDS 50.0%
GATTCTAGCGAAGGAGCTGA+AGG + chr7.2:15130793-15130812 MS.gene52742:CDS 50.0%
GGAATCAGCATGGTTGGAGT+TGG - chr7.2:15130393-15130412 None:intergenic 50.0%
GGGGATTACTGCAAATTGCG+TGG + chr7.2:15130820-15130839 MS.gene52742:CDS 50.0%
GTTTCACCAAGCCTCCCAAA+CGG - chr7.2:15130923-15130942 None:intergenic 50.0%
TACTGCAAATTGCGTGGCAC+CGG + chr7.2:15130826-15130845 MS.gene52742:CDS 50.0%
TGATGGGAAAACGGAGGAGA+TGG + chr7.2:15130874-15130893 MS.gene52742:CDS 50.0%
! AGATTTTACACCCGCGGGAT+CGG - chr7.2:15130480-15130499 None:intergenic 50.0%
! GCATCGAATCGTTTGAAGCG+AGG + chr7.2:15130665-15130684 MS.gene52742:CDS 50.0%
! GCGGCGTTGAAGATTTGCAT+GGG + chr7.2:15130728-15130747 MS.gene52742:CDS 50.0%
! GTTCGCAATGGTAGGGTACT+TGG - chr7.2:15130576-15130595 None:intergenic 50.0%
! TCGAATCGTTTGAAGCGAGG+CGG + chr7.2:15130668-15130687 MS.gene52742:CDS 50.0%
!! CGATCTCTTTACCGATTCCG+CGG - chr7.2:15130322-15130341 None:intergenic 50.0%
!! GATCTCTTTACCGATTCCGC+GGG - chr7.2:15130321-15130340 None:intergenic 50.0%
!! GGCTCGTAAAGTGGTTTGGT+TGG - chr7.2:15130435-15130454 None:intergenic 50.0%
!! GGTTTGGTTGGCGTTGATCT+CGG - chr7.2:15130423-15130442 None:intergenic 50.0%
ACTGCAAATTGCGTGGCACC+GGG + chr7.2:15130827-15130846 MS.gene52742:CDS 55.0%
AGCGAAGGAGCTGAAGGGAA+CGG + chr7.2:15130799-15130818 MS.gene52742:CDS 55.0%
ATCTCCGTTGCAATCGGTCC+CGG - chr7.2:15130848-15130867 None:intergenic 55.0%
GGGAGCTTACACAGCTTCGA+AGG + chr7.2:15130748-15130767 MS.gene52742:CDS 55.0%
! AATCGTTTGAAGCGAGGCGG+AGG + chr7.2:15130671-15130690 MS.gene52742:CDS 55.0%
! GACGGTGATGGCTCGTAAAG+TGG - chr7.2:15130444-15130463 None:intergenic 55.0%
! GGCGGCGTTGAAGATTTGCA+TGG + chr7.2:15130727-15130746 MS.gene52742:CDS 55.0%
!! TTGGTTGGCGTTGATCTCGG+CGG - chr7.2:15130420-15130439 None:intergenic 55.0%
CGAAGGAGCTGAAGGGAACG+GGG + chr7.2:15130801-15130820 MS.gene52742:CDS 60.0%
GAGAGTCCGTTTGGGAGGCT+TGG + chr7.2:15130914-15130933 MS.gene52742:CDS 60.0%
GCCCTCCACCTTGCTTCACT+CGG + chr7.2:15130341-15130360 MS.gene52742:CDS 60.0%
GCCGAGTGAAGCAAGGTGGA+GGG - chr7.2:15130345-15130364 None:intergenic 60.0%
GCGAAGGAGCTGAAGGGAAC+GGG + chr7.2:15130800-15130819 MS.gene52742:CDS 60.0%
GGCGACGGAATCAGCATGGT+TGG - chr7.2:15130399-15130418 None:intergenic 60.0%
GTCTTGCGCCGAGTGAAGCA+AGG - chr7.2:15130352-15130371 None:intergenic 60.0%
TTGCGCCGAGTGAAGCAAGG+TGG - chr7.2:15130349-15130368 None:intergenic 60.0%
! GTTTGAAGCGAGGCGGAGGA+GGG + chr7.2:15130675-15130694 MS.gene52742:CDS 60.0%
! TGGTAGGGTACTTGGCGTCG+AGG - chr7.2:15130568-15130587 None:intergenic 60.0%
!! AGGAGCGTTTCTCTGCGCGA+AGG + chr7.2:15130640-15130659 MS.gene52742:CDS 60.0%
!! ATTGTCACCGGTTCCTCCCG+CGG + chr7.2:15130302-15130321 MS.gene52742:CDS 60.0%
!! CTCTTTACCGATTCCGCGGG+AGG - chr7.2:15130318-15130337 None:intergenic 60.0%
ATCGGACACGTCAGCGCGGA+CGG - chr7.2:15130462-15130481 None:intergenic 65.0%
CGCCGAGTGAAGCAAGGTGG+AGG - chr7.2:15130346-15130365 None:intergenic 65.0%
! ACCGATTCCGCGGGAGGAAC+CGG - chr7.2:15130312-15130331 None:intergenic 65.0%
! ACCGGTTCCTCCCGCGGAAT+CGG + chr7.2:15130308-15130327 MS.gene52742:CDS 65.0%
! CGTTTGAAGCGAGGCGGAGG+AGG + chr7.2:15130674-15130693 MS.gene52742:CDS 65.0%
! GGACGCCGGCTGAGTTAACC+AGG - chr7.2:15130547-15130566 None:intergenic 65.0%
! GGCACCGGGACCGATTGCAA+CGG + chr7.2:15130841-15130860 MS.gene52742:CDS 65.0%
! GTACTTGGCGTCGAGGACGC+CGG - chr7.2:15130561-15130580 None:intergenic 65.0%
CACGTCAGCGCGGACGGTGA+TGG - chr7.2:15130456-15130475 None:intergenic 70.0%
CGCTGACGTGTCCGATCCCG+CGG + chr7.2:15130466-15130485 MS.gene52742:CDS 70.0%
CGGCGGCGACGGAATCAGCA+TGG - chr7.2:15130403-15130422 None:intergenic 70.0%
CGGGATCGGACACGTCAGCG+CGG - chr7.2:15130466-15130485 None:intergenic 70.0%
GCTGACGTGTCCGATCCCGC+GGG + chr7.2:15130467-15130486 MS.gene52742:CDS 70.0%
!! GGCGTTGATCTCGGCGGCGA+CGG - chr7.2:15130414-15130433 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 15130269 15131036 15130269 ID=MS.gene52742
chr7.2 mRNA 15130269 15131036 15130269 ID=MS.gene52742.t1;Parent=MS.gene52742
chr7.2 exon 15130269 15131036 15130269 ID=MS.gene52742.t1.exon1;Parent=MS.gene52742.t1
chr7.2 CDS 15130269 15131036 15130269 ID=cds.MS.gene52742.t1;Parent=MS.gene52742.t1
Gene Sequence

>MS.gene52742

ATGGCTTCGCTACCGCTTCAAGACCGAGTTGCAATTGTCACCGGTTCCTCCCGCGGAATCGGTAAAGAGATCGCCCTCCACCTTGCTTCACTCGGCGCAAGACTCGTCATCAACTACACCTCCAACTCCAACCATGCTGATTCCGTCGCCGCCGAGATCAACGCCAACCAAACCACTTTACGAGCCATCACCGTCCGCGCTGACGTGTCCGATCCCGCGGGTGTAAAATCTCTCTTCGACTCCGCCGAAGAAGCCTTCAAATCGCCTGTTCACATCCTGGTTAACTCAGCCGGCGTCCTCGACGCCAAGTACCCTACCATTGCGAACACAACCGTTGAAAGCTTCGATCGTATCATGAACATAAACTTAAAAGGAGCGTTTCTCTGCGCGAAGGAAGCATCGAATCGTTTGAAGCGAGGCGGAGGAGGGAGAATCATACTTTTGACATCGTCATTGGTGGCGGCGTTGAAGATTTGCATGGGAGCTTACACAGCTTCGAAGGCTGCTGTAGAAGCCATGACGAAGATTCTAGCGAAGGAGCTGAAGGGAACGGGGATTACTGCAAATTGCGTGGCACCGGGACCGATTGCAACGGAGATGTTTTTTGATGGGAAAACGGAGGAGATGGTGAAGAAAACTGAAGAAGAGAGTCCGTTTGGGAGGCTTGGTGAAACTAAAGATGTTGCTCCTGTTGTTGGTTTTTTGGCTACTGATGCTTCTGAATGGGTTAATGGTCAAATTATTCGTGTTAATGGTGGCTATGTTTAG
Protein sequence

>MS.gene52742.t1

MASLPLQDRVAIVTGSSRGIGKEIALHLASLGARLVINYTSNSNHADSVAAEINANQTTLRAITVRADVSDPAGVKSLFDSAEEAFKSPVHILVNSAGVLDAKYPTIANTTVESFDRIMNINLKGAFLCAKEASNRLKRGGGGRIILLTSSLVAALKICMGAYTASKAAVEAMTKILAKELKGTGITANCVAPGPIATEMFFDGKTEEMVKKTEEESPFGRLGETKDVAPVVGFLATDASEWVNGQIIRVNGGYV