AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87026

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87026.t1 MTR_7g071680 97.030 303 8 1 1 303 1 302 0.0 595
MS.gene87026.t1 MTR_4g052340 52.920 274 105 5 27 299 12 262 1.46e-92 276
MS.gene87026.t1 MTR_4g052350 52.518 278 106 5 27 301 12 266 1.11e-91 273
MS.gene87026.t1 MTR_4g052300 51.087 276 111 4 25 299 4 256 1.57e-88 265
MS.gene87026.t1 MTR_4g052320 50.179 279 110 4 25 299 4 257 3.08e-86 259
MS.gene87026.t1 MTR_7g107670 43.793 290 148 2 10 299 14 288 7.46e-84 254
MS.gene87026.t1 MTR_7g105460 49.442 269 115 3 28 295 12 260 1.15e-81 248
MS.gene87026.t1 MTR_2g090165 50.357 280 114 5 25 301 2 259 1.97e-81 247
MS.gene87026.t1 MTR_7g083870 48.718 273 126 4 27 299 33 291 2.25e-81 248
MS.gene87026.t1 MTR_3g020670 50.173 289 127 5 16 301 2 276 2.62e-81 247
MS.gene87026.t1 MTR_7g110130 49.462 279 119 4 25 301 2 260 1.86e-79 242
MS.gene87026.t1 MTR_7g110140 48.540 274 118 4 28 299 5 257 1.21e-77 238
MS.gene87026.t1 MTR_4g078630 46.263 281 133 6 25 303 15 279 1.58e-76 235
MS.gene87026.t1 MTR_7g105580 46.324 272 107 3 27 297 6 239 3.03e-74 228
MS.gene87026.t1 MTR_7g105590 58.824 187 73 3 27 212 6 189 2.60e-72 221
MS.gene87026.t1 MTR_7g110160 47.985 273 101 5 25 295 2 235 7.73e-70 217
MS.gene87026.t1 MTR_6g023590 44.815 270 126 6 28 294 12 261 2.39e-68 214
MS.gene87026.t1 MTR_6g035395 44.891 274 117 4 27 299 3 243 2.24e-67 211
MS.gene87026.t1 MTR_6g023910 45.221 272 126 7 24 292 8 259 3.89e-66 208
MS.gene87026.t1 MTR_6g023990 42.491 273 134 6 25 294 10 262 5.62e-65 205
MS.gene87026.t1 MTR_6g023610 43.796 274 131 6 22 292 6 259 6.44e-64 202
MS.gene87026.t1 MTR_6g023950 41.497 294 136 8 4 294 1 261 2.63e-63 201
MS.gene87026.t1 MTR_6g023600 42.222 270 133 6 28 294 12 261 7.80e-61 194
MS.gene87026.t1 MTR_7g105570 50.505 198 78 2 98 295 40 217 1.16e-56 182
MS.gene87026.t1 MTR_6g023600 41.481 270 129 7 28 294 12 255 3.32e-56 182
MS.gene87026.t1 MTR_3g113870 40.000 220 117 2 37 256 29 233 3.36e-54 176
MS.gene87026.t1 MTR_4g084800 54.887 133 56 2 27 158 11 140 3.60e-44 148
MS.gene87026.t1 MTR_3g085740 28.920 287 154 7 22 294 68 318 8.11e-28 110
MS.gene87026.t1 MTR_3g068155 32.727 275 148 7 29 295 19 264 1.07e-27 108
MS.gene87026.t1 MTR_3g068175 31.250 272 156 8 29 295 17 262 2.30e-26 105
MS.gene87026.t1 MTR_3g068070 30.797 276 152 8 29 295 15 260 1.01e-25 103
MS.gene87026.t1 MTR_4g064883 30.996 271 158 7 29 295 14 259 5.41e-25 101
MS.gene87026.t1 MTR_7g094520 33.216 283 149 10 23 294 6 259 8.84e-25 100
MS.gene87026.t1 MTR_3g068085 31.673 281 143 13 29 295 15 260 1.12e-24 100
MS.gene87026.t1 MTR_3g068175 30.797 276 156 9 29 295 17 266 3.44e-24 99.4
MS.gene87026.t1 MTR_7g094510 33.212 274 148 8 29 293 6 253 1.13e-23 97.4
MS.gene87026.t1 MTR_7g113650 28.053 303 172 10 7 293 16 288 2.30e-23 97.4
MS.gene87026.t1 MTR_4g132850 31.769 277 153 11 26 296 4 250 4.45e-23 95.9
MS.gene87026.t1 MTR_1g082760 28.571 280 156 9 28 293 39 288 2.81e-22 94.7
MS.gene87026.t1 MTR_4g064883 34.314 204 124 5 22 220 6 204 1.31e-21 90.9
MS.gene87026.t1 MTR_3g068065 28.417 278 160 8 29 297 17 264 5.72e-21 90.5
MS.gene87026.t1 MTR_4g131740 27.599 279 163 8 28 294 39 290 2.98e-20 89.0
MS.gene87026.t1 MTR_8g442750 31.119 286 171 7 19 298 4 269 4.18e-20 88.6
MS.gene87026.t1 MTR_1196s0010 29.151 271 158 9 27 293 272 512 1.27e-19 89.4
MS.gene87026.t1 MTR_4g064887 26.389 288 181 7 20 303 6 266 1.33e-19 86.7
MS.gene87026.t1 MTR_4g058840 30.526 285 160 10 26 295 2 263 3.70e-19 85.5
MS.gene87026.t1 MTR_4g058820 30.526 285 160 10 26 295 2 263 3.70e-19 85.5
MS.gene87026.t1 MTR_1g051165 28.975 283 164 10 27 295 12 271 6.86e-19 85.1
MS.gene87026.t1 MTR_7g063330 28.309 272 169 6 29 296 15 264 9.97e-19 84.3
MS.gene87026.t1 MTR_4g058810 28.571 280 160 9 29 295 11 263 5.04e-18 82.4
MS.gene87026.t1 MTR_7g063270 30.420 286 169 11 18 296 3 265 1.51e-17 80.9
MS.gene87026.t1 MTR_4g064887 30.392 204 133 4 20 219 6 204 3.27e-17 79.3
MS.gene87026.t1 MTR_7g063320 29.252 294 169 9 9 294 1 263 4.11e-17 79.7
MS.gene87026.t1 MTR_1g068955 30.686 277 156 8 26 292 11 261 2.53e-16 77.8
MS.gene87026.t1 MTR_7g063260 29.021 286 174 9 18 296 3 266 1.91e-14 72.4
MS.gene87026.t1 MTR_7g063390 26.740 273 171 6 29 295 16 265 2.34e-14 72.0
MS.gene87026.t1 MTR_8g096580 28.500 200 134 5 29 224 45 239 1.45e-13 70.5
MS.gene87026.t1 MTR_7g105560 54.237 59 25 1 22 78 4 62 3.02e-13 66.6
MS.gene87026.t1 MTR_7g063360 28.676 272 167 9 29 295 16 265 3.87e-13 68.6
MS.gene87026.t1 MTR_4g066050 29.353 201 129 5 32 224 27 222 1.13e-12 67.0
MS.gene87026.t1 MTR_4g086400 29.756 205 116 5 34 219 9 204 6.59e-12 66.2
MS.gene87026.t1 MTR_4g097510 25.131 191 137 3 30 219 3 188 6.65e-12 65.1
MS.gene87026.t1 MTR_8g044240 28.507 221 138 5 12 222 59 269 7.52e-12 65.5
MS.gene87026.t1 MTR_4g134660 30.198 202 126 8 27 220 4 198 1.13e-11 63.9
MS.gene87026.t1 MTR_4g058830 32.203 177 98 6 122 295 52 209 7.05e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87026.t1 AT3G51680 65.886 299 85 5 13 303 14 303 9.53e-131 374
MS.gene87026.t1 AT3G26770 48.897 272 125 2 27 298 39 296 3.90e-86 261
MS.gene87026.t1 AT3G29250 49.084 273 116 5 25 295 2 253 3.14e-80 244
MS.gene87026.t1 AT3G29250 46.644 298 128 6 8 295 13 289 3.67e-80 245
MS.gene87026.t1 AT2G47130 49.630 270 112 5 28 295 5 252 3.25e-79 241
MS.gene87026.t1 AT4G03140 45.588 272 133 2 27 298 76 332 3.70e-79 244
MS.gene87026.t1 AT3G29250 46.000 300 129 6 8 295 13 291 1.19e-78 241
MS.gene87026.t1 AT3G26760 42.662 293 149 4 7 299 21 294 3.06e-78 240
MS.gene87026.t1 AT2G47140 47.619 273 120 4 25 295 2 253 1.59e-77 237
MS.gene87026.t1 AT1G52340 45.324 278 133 3 27 299 16 279 5.97e-73 226
MS.gene87026.t1 AT3G29260 45.055 273 126 5 25 295 2 252 9.85e-72 222
MS.gene87026.t1 AT2G47120 46.296 270 120 6 28 295 6 252 1.03e-70 219
MS.gene87026.t1 AT2G47120 46.296 270 120 6 28 295 5 251 1.41e-70 219
MS.gene87026.t1 AT3G42960 47.482 278 123 7 25 297 4 263 4.25e-64 203
MS.gene87026.t1 AT5G06060 31.022 274 154 7 29 295 9 254 3.47e-29 112
MS.gene87026.t1 AT1G24360 28.094 299 178 7 5 294 47 317 1.54e-25 103
MS.gene87026.t1 AT1G63380 30.667 300 164 11 12 295 1 272 5.28e-24 99.4
MS.gene87026.t1 AT5G18210 32.014 278 151 9 29 294 8 259 2.47e-23 97.1
MS.gene87026.t1 AT1G63380 31.206 282 151 10 29 295 15 268 3.45e-23 97.1
MS.gene87026.t1 AT1G63380 31.206 282 151 10 29 295 17 270 4.56e-23 96.7
MS.gene87026.t1 AT1G63380 30.851 282 152 10 29 295 22 275 5.61e-23 96.3
MS.gene87026.t1 AT4G05530 32.246 276 153 10 26 296 6 252 1.23e-22 94.7
MS.gene87026.t1 AT2G29260 31.250 272 156 8 29 295 68 313 1.32e-22 95.9
MS.gene87026.t1 AT1G62610 29.831 295 173 10 12 295 1 272 1.62e-22 95.1
MS.gene87026.t1 AT3G55290 29.866 298 166 13 12 295 1 269 1.87e-22 94.7
MS.gene87026.t1 AT3G55290 30.249 281 154 12 29 295 18 270 2.38e-22 94.7
MS.gene87026.t1 AT2G30670 27.306 271 168 5 29 295 7 252 4.08e-22 93.6
MS.gene87026.t1 AT1G62610 30.325 277 160 9 29 295 14 267 9.94e-22 92.8
MS.gene87026.t1 AT1G62610 30.325 277 160 9 29 295 15 268 1.01e-21 92.8
MS.gene87026.t1 AT1G62610 30.325 277 160 9 29 295 13 266 1.06e-21 92.8
MS.gene87026.t1 AT1G07440 28.676 272 162 7 29 295 12 256 2.11e-21 91.7
MS.gene87026.t1 AT3G03980 29.866 298 163 10 12 293 1 268 2.74e-21 91.7
MS.gene87026.t1 AT3G46170 30.249 281 154 12 29 295 26 278 3.95e-21 91.3
MS.gene87026.t1 AT3G04000 31.186 295 153 10 19 293 5 269 8.37e-21 90.1
MS.gene87026.t1 AT5G18210 32.824 262 138 9 29 278 8 243 1.44e-20 89.7
MS.gene87026.t1 AT3G05260 26.429 280 163 7 28 294 36 285 2.84e-20 89.0
MS.gene87026.t1 AT1G54870 26.263 297 173 10 11 293 68 332 3.33e-20 89.7
MS.gene87026.t1 AT1G54870 26.263 297 173 10 11 293 66 330 3.39e-20 89.7
MS.gene87026.t1 AT2G29290 28.929 280 152 8 29 295 7 252 4.02e-20 88.2
MS.gene87026.t1 AT2G29330 26.568 271 170 6 29 295 7 252 5.93e-20 87.8
MS.gene87026.t1 AT1G07450 27.941 272 164 7 29 295 8 252 8.97e-20 87.0
MS.gene87026.t1 AT2G17845 29.787 282 153 11 29 293 47 300 9.11e-20 88.2
MS.gene87026.t1 AT4G13180 31.636 275 153 8 29 294 13 261 1.64e-19 86.7
MS.gene87026.t1 AT2G29310 28.102 274 162 7 29 295 7 252 1.82e-19 86.3
MS.gene87026.t1 AT3G55310 29.930 284 151 13 29 295 17 269 2.45e-19 86.3
MS.gene87026.t1 AT1G10310 31.905 210 136 3 19 226 5 209 2.49e-19 85.5
MS.gene87026.t1 AT2G29340 27.372 274 164 7 29 295 7 252 3.23e-19 85.5
MS.gene87026.t1 AT2G29340 27.372 274 164 7 29 295 7 252 4.71e-19 85.9
MS.gene87026.t1 AT3G12800 29.592 294 160 8 22 298 3 266 6.55e-19 85.5
MS.gene87026.t1 AT2G29320 29.391 279 153 9 29 295 13 259 1.31e-18 84.0
MS.gene87026.t1 AT2G29300 27.174 276 163 7 29 295 7 253 1.76e-18 83.6
MS.gene87026.t1 AT2G29300 26.950 282 168 7 29 301 7 259 3.10e-18 83.2
MS.gene87026.t1 AT2G29350 28.938 273 160 7 29 295 15 259 1.06e-17 81.6
MS.gene87026.t1 AT2G29360 26.909 275 164 6 29 295 16 261 1.28e-17 81.3
MS.gene87026.t1 AT2G29310 32.663 199 117 7 29 219 7 196 4.78e-17 78.2
MS.gene87026.t1 AT2G29340 31.414 191 116 5 29 212 7 189 1.84e-16 76.6
MS.gene87026.t1 AT2G29340 31.414 191 116 5 29 212 7 189 1.84e-16 76.6
MS.gene87026.t1 AT2G29290 28.972 214 124 6 84 295 48 235 2.05e-15 74.7
MS.gene87026.t1 AT2G29320 32.828 198 117 6 29 218 13 202 4.29e-15 73.2
MS.gene87026.t1 AT2G29350 30.964 197 123 4 29 219 15 204 3.84e-14 70.9
MS.gene87026.t1 AT5G50600 26.457 223 138 6 21 231 37 245 5.94e-13 68.9
MS.gene87026.t1 AT5G50700 26.457 223 138 6 21 231 37 245 5.94e-13 68.9
MS.gene87026.t1 AT2G29350 28.169 213 126 5 84 295 35 221 7.22e-13 67.4
MS.gene87026.t1 AT2G29310 26.070 257 155 7 46 295 22 250 7.52e-13 67.8
MS.gene87026.t1 AT2G29320 27.481 262 146 9 46 295 12 241 3.69e-12 65.5
MS.gene87026.t1 AT5G04900 30.457 197 125 4 35 222 83 276 7.62e-12 65.5
MS.gene87026.t1 AT5G50690 30.387 181 111 5 27 200 43 215 1.32e-11 63.9
MS.gene87026.t1 AT5G50590 30.387 181 111 5 27 200 43 215 1.32e-11 63.9
MS.gene87026.t1 AT5G50690 30.387 181 111 5 27 200 43 215 1.32e-11 64.7
MS.gene87026.t1 AT5G50590 30.387 181 111 5 27 200 43 215 1.32e-11 64.7
MS.gene87026.t1 AT4G20760 29.293 198 123 5 30 210 42 239 3.80e-11 63.2
MS.gene87026.t1 AT4G20760 29.293 198 123 5 30 210 62 259 4.14e-11 63.2

Find 53 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATGAGGGAATCAATTT+TGG 0.168629 7.4:-32629521 MS.gene87026:CDS
TTCAACAATGCTGGCTTTCT+TGG 0.183584 7.4:-32629884 MS.gene87026:CDS
AATTGGGAAAATATGGTATA+AGG 0.231461 7.4:-32629616 MS.gene87026:CDS
TTTGAGAGGAACAACTTTAA+AGG 0.232093 7.4:-32629441 MS.gene87026:CDS
AAAGAATGCTTCTTGTGAAT+TGG 0.241146 7.4:-32629633 MS.gene87026:CDS
GTCATGAGTGTTAATGTTAA+AGG 0.281504 7.4:-32629803 MS.gene87026:CDS
GAGGAATTTGTTAGAGGAAT+TGG 0.288716 7.4:-32629467 MS.gene87026:CDS
TCTTGTGAATTGGGAAAATA+TGG 0.307659 7.4:-32629623 MS.gene87026:CDS
GTTATGATACCTAGAGAAAT+TGG 0.314342 7.4:-32629749 MS.gene87026:CDS
AATGTTAAAGGAGTTGCTTT+AGG 0.341836 7.4:-32629791 MS.gene87026:CDS
GTTAATTGCATTTCTCCATT+TGG 0.358113 7.4:-32629593 MS.gene87026:CDS
AAGAATGCTTCTTGTGAATT+GGG 0.359321 7.4:-32629632 MS.gene87026:CDS
ACAGGTGGAGCTAGAGGAAT+TGG 0.380505 7.4:-32630103 MS.gene87026:CDS
CATGGTGCAAAAGTGGTAAT+TGG 0.384110 7.4:-32630052 MS.gene87026:CDS
CTTGTGAATGCTTGGAGAAA+TGG 0.386066 7.4:-32629554 MS.gene87026:CDS
GTGAAGAGAAAGTTCTTGAA+GGG 0.396504 7.4:+32630679 None:intergenic
GCTTCAAAGCATGCTATAGT+TGG 0.409180 7.4:-32629662 MS.gene87026:CDS
AAAATGGAGGAATTTGTTAG+AGG 0.410462 7.4:-32629473 MS.gene87026:CDS
ACTTCCTCAAGAAATTGTAT+TGG 0.410994 7.4:-32629329 MS.gene87026:CDS
ACATCAACACTTTCTCACTA+TGG 0.431385 7.4:-32629923 MS.gene87026:CDS
ATTTCCACTTCTAGTGTAGC+TGG 0.432577 7.4:-32629719 MS.gene87026:CDS
GACATAATGTTCAACAATGC+TGG 0.445419 7.4:-32629893 MS.gene87026:CDS
GATGAATCTAAGTATGTTAG+TGG 0.446032 7.4:-32629380 MS.gene87026:CDS
ATTGGGAAAATATGGTATAA+GGG 0.447917 7.4:-32629615 MS.gene87026:CDS
TTTCTCCTCCTTCACCTAAG+AGG 0.457332 7.4:-32630640 MS.gene87026:intron
CATCTATGCTTGTGAATGCT+TGG 0.461933 7.4:-32629562 MS.gene87026:CDS
AACTCCAGCTACACTAGAAG+TGG 0.492424 7.4:+32629715 None:intergenic
GGTCATAATCTAGTTGTTGA+TGG 0.504632 7.4:-32629359 MS.gene87026:CDS
ATAGATGTTGCAACACCAAA+TGG 0.508686 7.4:+32629578 None:intergenic
TGATATTGTTATAGGTTGGA+AGG 0.510402 7.4:-32630142 MS.gene87026:intron
AGTGAAGAGAAAGTTCTTGA+AGG 0.511591 7.4:+32630678 None:intergenic
GGTGATGTTGAAGATGAACT+TGG 0.516407 7.4:-32630031 MS.gene87026:CDS
ATTATGCATCCAATTTCTCT+AGG 0.516863 7.4:+32629740 None:intergenic
TGAAGAGAAAGTTCTTGAAG+GGG 0.527961 7.4:+32630680 None:intergenic
AGAGGAATTGGTAATTTGAG+AGG 0.537792 7.4:-32629455 MS.gene87026:CDS
AGGAATGAAACATGCTGCAA+AGG 0.544045 7.4:-32629771 MS.gene87026:CDS
TGGATTGCCTTTAATTGAGG+AGG 0.557523 7.4:-32629501 MS.gene87026:CDS
CAATGGACATAAATAGCTGA+TGG 0.565528 7.4:+32629983 None:intergenic
TGTGAAACATGGTGCAAAAG+TGG 0.566017 7.4:-32630059 MS.gene87026:CDS
CATGACTCGGTCGAATTCCT+CGG 0.569713 7.4:+32629820 None:intergenic
AAAATAGCTATTGTAACAGG+TGG 0.571177 7.4:-32630118 MS.gene87026:CDS
TAGTACCTCTTAGGTGAAGG+AGG 0.580775 7.4:+32630635 None:intergenic
CAATCCAATACAATTTCTTG+AGG 0.587313 7.4:+32629325 None:intergenic
ATTGTAACAGGTGGAGCTAG+AGG 0.598201 7.4:-32630109 MS.gene87026:CDS
TGGAGATGATGAAGTTGATG+AGG 0.599728 7.4:-32629534 MS.gene87026:CDS
AGGTGAAGGAGGAGAAAATG+TGG 0.602352 7.4:+32630646 None:intergenic
CATTGTGAACTTCGACGCCG+AGG 0.604387 7.4:-32629837 MS.gene87026:CDS
TAACATTAACACTCATGACT+CGG 0.611584 7.4:+32629807 None:intergenic
TTTCAACACTAACATCACAA+TGG 0.616635 7.4:+32629966 None:intergenic
TAGAGGAATTGGAGAAGCAA+CGG 0.616718 7.4:-32630092 MS.gene87026:CDS
GGAGATGATGAAGTTGATGA+GGG 0.618165 7.4:-32629533 MS.gene87026:CDS
CATAATCTAGTTGTTGATGG+TGG 0.619135 7.4:-32629356 MS.gene87026:CDS
TTTGAAGCTGTATAAGCATG+TGG 0.732644 7.4:+32629677 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTTTTACTATGTTT+TGG - chr7.4:32629678-32629697 MS.gene87026:CDS 10.0%
!!! TAATGTCTTTTTTTTTTGTT+TGG - chr7.4:32629438-32629457 MS.gene87026:CDS 15.0%
!! ACATAATATATGCAAGATTT+GGG + chr7.4:32629483-32629502 None:intergenic 20.0%
!! GGAATATTTGATATTGTTAT+AGG - chr7.4:32629873-32629892 MS.gene87026:CDS 20.0%
!! TACATAATATATGCAAGATT+TGG + chr7.4:32629484-32629503 None:intergenic 20.0%
!! TATTTGATATTGTTATAGGT+TGG - chr7.4:32629877-32629896 MS.gene87026:CDS 20.0%
!! TTAACTAACTATGAATCTTA+TGG - chr7.4:32629852-32629871 MS.gene87026:CDS 20.0%
! AAGATTACTATCAATTGATG+GGG + chr7.4:32629749-32629768 None:intergenic 25.0%
! AATCAATATGAGACCATATT+TGG + chr7.4:32629792-32629811 None:intergenic 25.0%
! AATTGGGAAAATATGGTATA+AGG - chr7.4:32630407-32630426 MS.gene87026:intron 25.0%
! ATTGGGAAAATATGGTATAA+GGG - chr7.4:32630408-32630427 MS.gene87026:intron 25.0%
! GAAGATTACTATCAATTGAT+GGG + chr7.4:32629750-32629769 None:intergenic 25.0%
! TACCATGAAAAATTTCATAC+TGG - chr7.4:32629703-32629722 MS.gene87026:CDS 25.0%
! TGAAGATTACTATCAATTGA+TGG + chr7.4:32629751-32629770 None:intergenic 25.0%
!! ATCCAGTATGAAATTTTTCA+TGG + chr7.4:32629708-32629727 None:intergenic 25.0%
!!! TAGAAATTTTAGTACCTCTT+AGG + chr7.4:32629400-32629419 None:intergenic 25.0%
!!! TGTCTTTTTTTTTTGTTTGG+TGG - chr7.4:32629441-32629460 MS.gene87026:CDS 25.0%
AAAATAGCTATTGTAACAGG+TGG - chr7.4:32629905-32629924 MS.gene87026:CDS 30.0%
AAAGAATGCTTCTTGTGAAT+TGG - chr7.4:32630390-32630409 MS.gene87026:intron 30.0%
AAGAATGCTTCTTGTGAATT+GGG - chr7.4:32630391-32630410 MS.gene87026:intron 30.0%
ACTTCCTCAAGAAATTGTAT+TGG - chr7.4:32630694-32630713 MS.gene87026:CDS 30.0%
ATTATGCATCCAATTTCTCT+AGG + chr7.4:32630286-32630305 None:intergenic 30.0%
CAATCCAATACAATTTCTTG+AGG + chr7.4:32630701-32630720 None:intergenic 30.0%
GATGAATCTAAGTATGTTAG+TGG - chr7.4:32630643-32630662 MS.gene87026:CDS 30.0%
GGAAAAATAGCTATTGTAAC+AGG - chr7.4:32629902-32629921 MS.gene87026:CDS 30.0%
GTCATGAGTGTTAATGTTAA+AGG - chr7.4:32630220-32630239 MS.gene87026:intron 30.0%
GTTAATTGCATTTCTCCATT+TGG - chr7.4:32630430-32630449 MS.gene87026:intron 30.0%
GTTATCCCAAAAACCAAATA+TGG - chr7.4:32629776-32629795 MS.gene87026:CDS 30.0%
GTTATGATACCTAGAGAAAT+TGG - chr7.4:32630274-32630293 MS.gene87026:intron 30.0%
TAACATTAACACTCATGACT+CGG + chr7.4:32630219-32630238 None:intergenic 30.0%
TCTTGTGAATTGGGAAAATA+TGG - chr7.4:32630400-32630419 MS.gene87026:intron 30.0%
TTTCAACACTAACATCACAA+TGG + chr7.4:32630060-32630079 None:intergenic 30.0%
TTTGAGAGGAACAACTTTAA+AGG - chr7.4:32630582-32630601 MS.gene87026:intron 30.0%
! AATGTTAAAGGAGTTGCTTT+AGG - chr7.4:32630232-32630251 MS.gene87026:intron 30.0%
! GTGAGAATTTTTGTGAAACA+TGG - chr7.4:32629953-32629972 MS.gene87026:CDS 30.0%
! TGATATTGTTATAGGTTGGA+AGG - chr7.4:32629881-32629900 MS.gene87026:CDS 30.0%
! TTTTGGATTGCCTTTAATTG+AGG - chr7.4:32630519-32630538 MS.gene87026:intron 30.0%
!! AAAATGGAGGAATTTGTTAG+AGG - chr7.4:32630550-32630569 MS.gene87026:intron 30.0%
!!! ATGAGACCATATTTGGTTTT+TGG + chr7.4:32629785-32629804 None:intergenic 30.0%
!!! CACAATGCTTTTTTTGTTCT+TGG + chr7.4:32630173-32630192 None:intergenic 30.0%
!!! CTTTTTTTTTTGTTTGGTGG+TGG - chr7.4:32629444-32629463 MS.gene87026:CDS 30.0%
!!! TGAGACCATATTTGGTTTTT+GGG + chr7.4:32629784-32629803 None:intergenic 30.0%
!!! TGCTTTTTTTGTTCTTGGAT+TGG + chr7.4:32630168-32630187 None:intergenic 30.0%
AATTGAGGAGGTCGAAAAAA+TGG - chr7.4:32630534-32630553 MS.gene87026:intron 35.0%
ACATCAACACTTTCTCACTA+TGG - chr7.4:32630100-32630119 MS.gene87026:CDS 35.0%
AGTGAAGAGAAAGTTCTTGA+AGG + chr7.4:32629348-32629367 None:intergenic 35.0%
ATAGATGTTGCAACACCAAA+TGG + chr7.4:32630448-32630467 None:intergenic 35.0%
ATTACTATCAATTGATGGGG+TGG + chr7.4:32629746-32629765 None:intergenic 35.0%
CAATGGACATAAATAGCTGA+TGG + chr7.4:32630043-32630062 None:intergenic 35.0%
GACATAATGTTCAACAATGC+TGG - chr7.4:32630130-32630149 MS.gene87026:CDS 35.0%
GGTCATAATCTAGTTGTTGA+TGG - chr7.4:32630664-32630683 MS.gene87026:CDS 35.0%
GTGAAGAGAAAGTTCTTGAA+GGG + chr7.4:32629347-32629366 None:intergenic 35.0%
TGAAGAGAAAGTTCTTGAAG+GGG + chr7.4:32629346-32629365 None:intergenic 35.0%
! AGAGGAATTGGTAATTTGAG+AGG - chr7.4:32630568-32630587 MS.gene87026:intron 35.0%
! CATAATCTAGTTGTTGATGG+TGG - chr7.4:32630667-32630686 MS.gene87026:CDS 35.0%
! TGAGTTTAACTCAGTTGGTA+GGG + chr7.4:32629515-32629534 None:intergenic 35.0%
! TTTGAAGCTGTATAAGCATG+TGG + chr7.4:32630349-32630368 None:intergenic 35.0%
! TTTTAGTACCTCTTAGGTGA+AGG + chr7.4:32629394-32629413 None:intergenic 35.0%
! TTTTCGACCTCCTCAATTAA+AGG + chr7.4:32630532-32630551 None:intergenic 35.0%
!! GAGGAATTTGTTAGAGGAAT+TGG - chr7.4:32630556-32630575 MS.gene87026:intron 35.0%
!! GTTGATGAGGGAATCAATTT+TGG - chr7.4:32630502-32630521 MS.gene87026:intron 35.0%
AGGAATGAAACATGCTGCAA+AGG - chr7.4:32630252-32630271 MS.gene87026:intron 40.0%
ATTTCCACTTCTAGTGTAGC+TGG - chr7.4:32630304-32630323 MS.gene87026:intron 40.0%
CATCTATGCTTGTGAATGCT+TGG - chr7.4:32630461-32630480 MS.gene87026:intron 40.0%
CATGGTGCAAAAGTGGTAAT+TGG - chr7.4:32629971-32629990 MS.gene87026:CDS 40.0%
CTTGTGAATGCTTGGAGAAA+TGG - chr7.4:32630469-32630488 MS.gene87026:intron 40.0%
GCTTCAAAGCATGCTATAGT+TGG - chr7.4:32630361-32630380 MS.gene87026:intron 40.0%
GGTGATGTTGAAGATGAACT+TGG - chr7.4:32629992-32630011 MS.gene87026:CDS 40.0%
GTGAGTTTAACTCAGTTGGT+AGG + chr7.4:32629516-32629535 None:intergenic 40.0%
TAGAGGAATTGGAGAAGCAA+CGG - chr7.4:32629931-32629950 MS.gene87026:CDS 40.0%
TGGATTGCCTTTAATTGAGG+AGG - chr7.4:32630522-32630541 MS.gene87026:intron 40.0%
TGTGAAACATGGTGCAAAAG+TGG - chr7.4:32629964-32629983 MS.gene87026:CDS 40.0%
! AAGATTTGGGATTCAAACCC+CGG + chr7.4:32629470-32629489 None:intergenic 40.0%
! TCTAGTGTAGCTGGAGTTTT+AGG - chr7.4:32630313-32630332 MS.gene87026:intron 40.0%
!! GGAGATGATGAAGTTGATGA+GGG - chr7.4:32630490-32630509 MS.gene87026:intron 40.0%
!! TGGAGATGATGAAGTTGATG+AGG - chr7.4:32630489-32630508 MS.gene87026:intron 40.0%
!! TTCAACAATGCTGGCTTTCT+TGG - chr7.4:32630139-32630158 MS.gene87026:intron 40.0%
!!! TTTTTTTGTTTGGTGGTGGC+CGG - chr7.4:32629448-32629467 MS.gene87026:CDS 40.0%
AACTCCAGCTACACTAGAAG+TGG + chr7.4:32630311-32630330 None:intergenic 45.0%
AGGTGAAGGAGGAGAAAATG+TGG + chr7.4:32629380-32629399 None:intergenic 45.0%
ATTGTAACAGGTGGAGCTAG+AGG - chr7.4:32629914-32629933 MS.gene87026:CDS 45.0%
CCAACTGAGTTAAACTCACG+AGG - chr7.4:32629517-32629536 MS.gene87026:CDS 45.0%
CCTCGTGAGTTTAACTCAGT+TGG + chr7.4:32629520-32629539 None:intergenic 45.0%
TAGTACCTCTTAGGTGAAGG+AGG + chr7.4:32629391-32629410 None:intergenic 45.0%
TGAGGAGGTCGAAAAAATGG+AGG - chr7.4:32630537-32630556 MS.gene87026:intron 45.0%
TTTCTCCTCCTTCACCTAAG+AGG - chr7.4:32629383-32629402 MS.gene87026:CDS 45.0%
!!! AGTGTAGCTGGAGTTTTAGG+AGG - chr7.4:32630316-32630335 MS.gene87026:intron 45.0%
!!! TTTTTTGTTTGGTGGTGGCC+GGG - chr7.4:32629449-32629468 MS.gene87026:CDS 45.0%
!! ATAAAAATAATAATAATTCA+AGG + chr7.4:32629566-32629585 None:intergenic 5.0%
ACAGGTGGAGCTAGAGGAAT+TGG - chr7.4:32629920-32629939 MS.gene87026:CDS 50.0%
!! CATGACTCGGTCGAATTCCT+CGG + chr7.4:32630206-32630225 None:intergenic 50.0%
!!! GCTGGAGTTTTAGGAGGACT+TGG - chr7.4:32630322-32630341 MS.gene87026:intron 50.0%
!!! TTTTTGTTTGGTGGTGGCCG+GGG - chr7.4:32629450-32629469 MS.gene87026:CDS 50.0%
CATTGTGAACTTCGACGCCG+AGG - chr7.4:32630186-32630205 MS.gene87026:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 32629322 32630723 32629322 ID=MS.gene87026
chr7.4 mRNA 32629322 32630723 32629322 ID=MS.gene87026.t1;Parent=MS.gene87026
chr7.4 exon 32630641 32630723 32630641 ID=MS.gene87026.t1.exon1;Parent=MS.gene87026.t1
chr7.4 CDS 32630641 32630723 32630641 ID=cds.MS.gene87026.t1;Parent=MS.gene87026.t1
chr7.4 exon 32629322 32630150 32629322 ID=MS.gene87026.t1.exon2;Parent=MS.gene87026.t1
chr7.4 CDS 32629322 32630150 32629322 ID=cds.MS.gene87026.t1;Parent=MS.gene87026.t1
Gene Sequence

>MS.gene87026

ATGGGTGTAATGTCTGAGAAACCCCTTCAAGAACTTTCTCTTCACTCTACAGACACCACATTTTCTCCTCCTTCACCTAAGAGGTACTAAAATTTCTATATTGAAAGTAATATAATTAATGTCTTTTTTTTTTGTTTGGTGGTGGCCGGGGTTTGAATCCCAAATCTTGCATATATTATGTATGCATTGTCCCTACCAACTGAGTTAAACTCACGAGGACATTAATGTCTTTTTCTATTTACCTTGAATTATTATTATTTTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTAATATCATTATTATTATTTTTACTATGTTTTGGTTTACCATGAAAAATTTCATACTGGATAAGTATATGTCTCTTCCACCCCATCAATTGATAGTAATCTTCAATCTTGTTATCCCAAAAACCAAATATGGTCTCATATTGATTATGCACATATATTGAGAAATGAATAGTGTTTTTTTAAAACTTAACTAACTATGAATCTTATGGAATATTTGATATTGTTATAGGTTGGAAGGAAAAATAGCTATTGTAACAGGTGGAGCTAGAGGAATTGGAGAAGCAACGGTGAGAATTTTTGTGAAACATGGTGCAAAAGTGGTAATTGGTGATGTTGAAGATGAACTTGGAATCATGCTTGCAAATTCACTCTCTCCATCAGCTATTTATGTCCATTGTGATGTTAGTGTTGAAAAAGATGTTGAAAATTTAGTCACATCAACACTTTCTCACTATGGAAAACTTGACATAATGTTCAACAATGCTGGCTTTCTTGGAAACCAATCCAAGAACAAAAAAAGCATTGTGAACTTCGACGCCGAGGAATTCGACCGAGTCATGAGTGTTAATGTTAAAGGAGTTGCTTTAGGAATGAAACATGCTGCAAAGGTTATGATACCTAGAGAAATTGGATGCATAATTTCCACTTCTAGTGTAGCTGGAGTTTTAGGAGGACTTGGTCCACATGCTTATACAGCTTCAAAGCATGCTATAGTTGGATTAACAAAGAATGCTTCTTGTGAATTGGGAAAATATGGTATAAGGGTTAATTGCATTTCTCCATTTGGTGTTGCAACATCTATGCTTGTGAATGCTTGGAGAAATGGAGATGATGAAGTTGATGAGGGAATCAATTTTGGATTGCCTTTAATTGAGGAGGTCGAAAAAATGGAGGAATTTGTTAGAGGAATTGGTAATTTGAGAGGAACAACTTTAAAGGCTCAAGATATTGCTGAAGCTGTTCTTTATCTTGCTAGTGATGAATCTAAGTATGTTAGTGGTCATAATCTAGTTGTTGATGGTGGAATTACTTCCTCAAGAAATTGTATTGGATTGTGA
Protein sequence

>MS.gene87026.t1

MGVMSEKPLQELSLHSTDTTFSPPSPKRLEGKIAIVTGGARGIGEATVRIFVKHGAKVVIGDVEDELGIMLANSLSPSAIYVHCDVSVEKDVENLVTSTLSHYGKLDIMFNNAGFLGNQSKNKKSIVNFDAEEFDRVMSVNVKGVALGMKHAAKVMIPREIGCIISTSSVAGVLGGLGPHAYTASKHAIVGLTKNASCELGKYGIRVNCISPFGVATSMLVNAWRNGDDEVDEGINFGLPLIEEVEKMEEFVRGIGNLRGTTLKAQDIAEAVLYLASDESKYVSGHNLVVDGGITSSRNCIGL