AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039828

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039828.t1 MTR_3g020670 98.214 280 5 0 1 280 1 280 0.0 561
MS.gene039828.t1 MTR_7g071680 50.694 288 126 5 2 276 16 300 5.02e-88 264
MS.gene039828.t1 MTR_4g052340 48.529 272 130 2 8 279 6 267 4.17e-83 251
MS.gene039828.t1 MTR_4g052350 49.446 271 127 3 10 280 8 268 3.80e-82 248
MS.gene039828.t1 MTR_4g052320 49.057 265 126 2 15 279 7 262 2.51e-81 246
MS.gene039828.t1 MTR_4g052300 48.872 266 126 3 15 280 7 262 1.91e-79 241
MS.gene039828.t1 MTR_7g105460 48.375 277 131 4 8 280 2 270 4.14e-74 228
MS.gene039828.t1 MTR_7g107670 45.525 257 137 2 14 270 31 284 3.69e-71 221
MS.gene039828.t1 MTR_7g083870 46.212 264 126 4 14 270 33 287 1.58e-70 219
MS.gene039828.t1 MTR_4g078630 44.000 275 147 4 1 273 5 274 7.53e-69 215
MS.gene039828.t1 MTR_7g110130 45.594 261 134 3 14 273 4 257 1.06e-67 211
MS.gene039828.t1 MTR_7g110140 47.674 258 124 5 15 270 5 253 3.42e-67 210
MS.gene039828.t1 MTR_2g090165 45.283 265 134 5 14 276 4 259 9.08e-65 204
MS.gene039828.t1 MTR_7g105590 52.432 185 87 1 14 198 6 189 9.41e-65 201
MS.gene039828.t1 MTR_7g105580 41.199 267 124 4 13 275 5 242 4.56e-64 202
MS.gene039828.t1 MTR_6g023590 43.798 258 134 5 15 269 12 261 2.76e-62 197
MS.gene039828.t1 MTR_6g023990 43.411 258 135 5 15 269 13 262 2.43e-60 192
MS.gene039828.t1 MTR_7g110160 43.774 265 122 4 14 277 4 242 7.87e-60 191
MS.gene039828.t1 MTR_6g035395 44.015 259 121 5 14 270 3 239 2.32e-58 187
MS.gene039828.t1 MTR_6g023950 42.857 259 139 5 15 271 12 263 1.03e-56 183
MS.gene039828.t1 MTR_6g023600 42.910 268 140 6 6 269 3 261 1.87e-56 182
MS.gene039828.t1 MTR_6g023610 38.462 273 159 4 6 276 3 268 1.13e-55 181
MS.gene039828.t1 MTR_6g023600 42.537 268 135 7 6 269 3 255 9.36e-54 175
MS.gene039828.t1 MTR_6g023910 38.722 266 154 4 6 269 3 261 1.93e-53 175
MS.gene039828.t1 MTR_7g105570 51.813 193 85 2 89 280 42 227 6.83e-53 172
MS.gene039828.t1 MTR_3g113870 43.915 189 104 1 24 212 29 215 9.60e-50 164
MS.gene039828.t1 MTR_4g084800 46.154 143 73 2 8 147 2 143 1.45e-36 127
MS.gene039828.t1 MTR_3g085740 32.014 278 160 8 1 269 61 318 2.23e-29 113
MS.gene039828.t1 MTR_1g082760 31.579 266 160 6 12 268 36 288 9.22e-29 111
MS.gene039828.t1 MTR_7g113650 31.461 267 159 7 12 268 36 288 3.78e-27 107
MS.gene039828.t1 MTR_4g132850 33.716 261 151 8 14 269 5 248 5.49e-26 103
MS.gene039828.t1 MTR_7g094520 30.112 269 170 5 8 269 2 259 6.66e-25 100
MS.gene039828.t1 MTR_4g064887 31.502 273 162 9 6 270 5 260 9.99e-25 100
MS.gene039828.t1 MTR_7g094510 32.234 273 142 8 16 269 6 254 1.34e-24 99.4
MS.gene039828.t1 MTR_4g131740 29.588 267 165 7 12 268 36 289 2.33e-24 99.8
MS.gene039828.t1 MTR_3g068070 31.128 257 164 6 16 270 15 260 4.35e-24 98.6
MS.gene039828.t1 MTR_3g068155 32.472 271 168 8 4 270 5 264 2.36e-23 96.7
MS.gene039828.t1 MTR_3g068085 32.308 260 157 9 16 270 15 260 2.39e-23 96.7
MS.gene039828.t1 MTR_1196s0010 30.153 262 151 7 19 271 277 515 4.64e-22 95.9
MS.gene039828.t1 MTR_4g058840 31.022 274 157 8 12 270 7 263 3.41e-21 90.9
MS.gene039828.t1 MTR_4g058820 31.022 274 157 8 12 270 7 263 3.41e-21 90.9
MS.gene039828.t1 MTR_4g058810 30.483 269 165 7 12 270 7 263 4.48e-21 90.5
MS.gene039828.t1 MTR_3g068175 33.721 258 156 8 16 270 17 262 2.42e-20 88.6
MS.gene039828.t1 MTR_3g068065 30.769 260 161 8 16 270 17 262 2.82e-20 88.2
MS.gene039828.t1 MTR_4g064883 31.154 260 160 8 16 270 14 259 3.53e-19 85.1
MS.gene039828.t1 MTR_1g051165 29.779 272 168 9 12 270 10 271 1.31e-18 84.0
MS.gene039828.t1 MTR_3g068175 33.206 262 156 9 16 270 17 266 2.95e-18 82.8
MS.gene039828.t1 MTR_7g063330 33.588 262 154 8 16 270 15 263 7.90e-18 81.3
MS.gene039828.t1 MTR_4g064887 32.057 209 126 6 6 206 5 205 4.64e-17 78.6
MS.gene039828.t1 MTR_7g063320 32.830 265 151 9 16 269 15 263 9.65e-17 78.2
MS.gene039828.t1 MTR_1g068955 29.008 262 162 7 16 267 14 261 3.58e-16 77.0
MS.gene039828.t1 MTR_4g064883 34.359 195 118 6 16 205 14 203 7.24e-16 75.1
MS.gene039828.t1 MTR_4g097510 28.205 195 135 5 19 212 5 195 7.91e-16 75.9
MS.gene039828.t1 MTR_7g063270 30.739 257 168 6 16 270 16 264 1.34e-15 75.1
MS.gene039828.t1 MTR_8g096580 30.500 200 129 6 19 213 48 242 1.40e-15 75.9
MS.gene039828.t1 MTR_4g086400 30.909 220 132 8 18 223 6 219 3.51e-15 75.9
MS.gene039828.t1 MTR_7g063260 30.739 257 169 5 16 270 16 265 5.50e-15 73.6
MS.gene039828.t1 MTR_4g086410 32.143 224 124 10 18 223 6 219 3.43e-14 72.8
MS.gene039828.t1 MTR_3g087850 29.787 188 123 5 20 205 30 210 3.68e-14 71.6
MS.gene039828.t1 MTR_7g063360 30.350 257 170 5 16 270 16 265 5.95e-14 70.5
MS.gene039828.t1 MTR_3g087860 30.556 144 95 3 63 205 56 195 2.21e-11 63.2
MS.gene039828.t1 MTR_1g007800 28.384 229 149 7 56 279 46 264 6.09e-11 62.0
MS.gene039828.t1 MTR_4g058830 31.613 155 95 4 119 270 63 209 7.31e-11 60.8
MS.gene039828.t1 MTR_7g076660 28.395 162 103 6 19 168 8 168 7.88e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039828.t1 AT1G52340 69.259 270 80 1 14 280 16 285 1.00e-134 382
MS.gene039828.t1 AT3G51680 48.897 272 130 4 8 270 24 295 2.32e-75 232
MS.gene039828.t1 AT3G26770 47.328 262 128 5 13 270 38 293 1.80e-74 230
MS.gene039828.t1 AT3G29250 45.914 257 130 4 15 270 5 253 6.66e-69 214
MS.gene039828.t1 AT3G29250 45.113 266 137 4 6 270 34 291 1.78e-68 214
MS.gene039828.t1 AT3G29250 45.914 257 130 4 15 270 41 289 5.01e-68 213
MS.gene039828.t1 AT3G26760 43.446 267 139 4 10 270 30 290 5.40e-68 213
MS.gene039828.t1 AT2G47130 44.358 257 133 4 15 270 5 252 6.32e-68 211
MS.gene039828.t1 AT4G03140 45.525 257 137 3 14 270 76 329 3.84e-67 213
MS.gene039828.t1 AT3G29260 44.186 258 134 4 14 270 4 252 6.00e-66 206
MS.gene039828.t1 AT2G47140 42.636 258 139 4 14 270 4 253 2.68e-64 202
MS.gene039828.t1 AT2G47120 43.580 257 134 6 15 270 5 251 2.40e-61 195
MS.gene039828.t1 AT2G47120 43.580 257 134 6 15 270 6 252 2.56e-61 195
MS.gene039828.t1 AT3G42960 41.418 268 148 6 14 277 6 268 1.60e-50 167
MS.gene039828.t1 AT5G18210 31.835 267 158 7 16 271 8 261 3.43e-27 106
MS.gene039828.t1 AT2G29310 33.582 268 157 8 16 277 7 259 1.17e-25 102
MS.gene039828.t1 AT5G06060 31.907 257 162 6 16 270 9 254 1.63e-25 102
MS.gene039828.t1 AT4G13180 32.734 278 161 9 1 269 1 261 2.92e-25 101
MS.gene039828.t1 AT1G54870 29.348 276 173 6 2 268 68 330 3.00e-25 102
MS.gene039828.t1 AT1G54870 29.348 276 173 6 2 268 70 332 3.75e-25 102
MS.gene039828.t1 AT2G30670 32.584 267 161 8 16 277 7 259 4.28e-25 100
MS.gene039828.t1 AT2G29340 32.721 272 154 9 16 277 7 259 1.22e-24 99.8
MS.gene039828.t1 AT2G29340 32.721 272 154 9 16 277 7 259 1.31e-24 100
MS.gene039828.t1 AT3G05260 29.562 274 170 6 5 269 26 285 4.55e-24 99.0
MS.gene039828.t1 AT1G24360 30.292 274 169 8 2 269 60 317 7.37e-24 99.0
MS.gene039828.t1 AT2G29360 31.599 269 169 7 12 277 12 268 1.45e-23 97.1
MS.gene039828.t1 AT4G05530 33.333 270 140 10 14 269 7 250 2.72e-23 95.9
MS.gene039828.t1 AT5G18210 32.530 249 144 7 16 253 8 243 6.58e-23 95.5
MS.gene039828.t1 AT2G47150 29.134 254 116 6 18 269 3 194 8.71e-23 93.6
MS.gene039828.t1 AT3G03980 31.095 283 167 8 1 269 1 269 5.42e-22 92.8
MS.gene039828.t1 AT2G29330 32.836 268 159 8 16 277 7 259 5.92e-22 92.4
MS.gene039828.t1 AT2G29320 32.117 274 154 10 16 277 13 266 8.60e-22 92.4
MS.gene039828.t1 AT2G29350 31.250 272 161 8 16 279 15 268 2.78e-21 90.9
MS.gene039828.t1 AT3G04000 30.545 275 168 6 7 268 5 269 4.48e-21 90.5
MS.gene039828.t1 AT2G29150 30.943 265 167 8 16 277 16 267 7.41e-21 89.7
MS.gene039828.t1 AT2G17845 31.321 265 159 9 16 268 47 300 8.14e-21 90.5
MS.gene039828.t1 AT3G55290 32.234 273 155 10 12 270 13 269 1.38e-20 89.4
MS.gene039828.t1 AT3G55290 32.234 273 155 10 12 270 14 270 1.51e-20 89.4
MS.gene039828.t1 AT2G29290 30.769 260 161 9 16 270 7 252 2.62e-20 88.2
MS.gene039828.t1 AT2G29300 30.000 270 151 10 16 270 7 253 4.04e-20 87.8
MS.gene039828.t1 AT1G07450 30.712 267 165 9 16 277 8 259 5.26e-20 87.4
MS.gene039828.t1 AT2G29370 30.882 272 165 10 12 276 12 267 6.64e-20 87.0
MS.gene039828.t1 AT3G55310 30.325 277 155 9 12 270 13 269 6.91e-20 87.4
MS.gene039828.t1 AT1G63380 28.782 271 168 8 12 270 13 270 9.39e-20 87.0
MS.gene039828.t1 AT1G63380 28.782 271 168 8 12 270 15 272 9.67e-20 87.0
MS.gene039828.t1 AT1G63380 28.782 271 168 8 12 270 11 268 9.88e-20 87.0
MS.gene039828.t1 AT1G63380 28.782 271 168 8 12 270 18 275 1.26e-19 86.7
MS.gene039828.t1 AT2G29300 30.000 270 151 10 16 270 7 253 1.46e-19 86.7
MS.gene039828.t1 AT1G62610 29.151 271 167 8 12 270 10 267 2.12e-19 85.9
MS.gene039828.t1 AT1G62610 29.151 271 167 8 12 270 11 268 2.21e-19 85.9
MS.gene039828.t1 AT1G62610 29.151 271 167 8 12 270 15 272 2.23e-19 85.9
MS.gene039828.t1 AT1G62610 29.151 271 167 8 12 270 9 266 2.28e-19 85.9
MS.gene039828.t1 AT3G46170 30.224 268 167 7 12 270 22 278 3.67e-19 85.5
MS.gene039828.t1 AT1G07440 30.000 270 171 8 13 277 7 263 3.97e-19 85.1
MS.gene039828.t1 AT2G29310 31.474 251 151 8 33 277 22 257 1.11e-18 83.6
MS.gene039828.t1 AT5G65205 30.196 255 154 10 20 261 10 253 3.48e-18 82.8
MS.gene039828.t1 AT2G29260 29.259 270 170 5 7 270 59 313 6.79e-18 82.4
MS.gene039828.t1 AT2G29340 33.831 201 113 6 16 206 7 197 1.70e-17 79.3
MS.gene039828.t1 AT2G29340 33.831 201 113 6 16 206 7 197 1.70e-17 79.3
MS.gene039828.t1 AT1G49670 34.135 208 114 7 18 208 6 207 4.14e-17 81.6
MS.gene039828.t1 AT1G49670 34.135 208 114 7 18 208 6 207 5.10e-17 81.3
MS.gene039828.t1 AT2G29310 34.518 197 117 5 16 206 7 197 7.99e-17 77.4
MS.gene039828.t1 AT5G10050 27.083 240 156 7 20 248 9 240 7.42e-16 76.3
MS.gene039828.t1 AT3G12800 30.292 274 154 12 18 273 12 266 1.14e-15 75.9
MS.gene039828.t1 AT2G29320 28.906 256 152 9 33 277 12 248 3.04e-15 73.9
MS.gene039828.t1 AT2G29350 32.487 197 117 7 18 206 17 205 9.47e-15 72.0
MS.gene039828.t1 AT2G29320 35.204 196 112 7 16 203 13 201 1.07e-14 71.6
MS.gene039828.t1 AT2G29350 29.675 246 147 8 42 279 3 230 3.00e-14 70.9
MS.gene039828.t1 AT1G10310 30.851 188 126 4 19 205 18 202 1.26e-13 69.3
MS.gene039828.t1 AT3G01980 26.259 278 179 9 12 279 4 265 1.46e-13 69.3
MS.gene039828.t1 AT3G01980 26.259 278 179 9 12 279 4 265 1.46e-13 69.3
MS.gene039828.t1 AT5G50690 31.667 180 111 5 13 186 42 215 1.84e-12 66.2
MS.gene039828.t1 AT5G50590 31.667 180 111 5 13 186 42 215 1.84e-12 66.2
MS.gene039828.t1 AT3G01980 27.948 229 149 7 57 279 23 241 2.80e-12 65.5
MS.gene039828.t1 AT3G03330 28.643 199 121 6 18 203 43 233 2.58e-11 63.5
MS.gene039828.t1 AT5G50770 28.293 205 132 7 1 198 30 226 8.91e-11 62.0

Find 79 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCAACAATGCCGGAATTTC+CGG 0.202788 3.3:+12647309 MS.gene039828:CDS
TCTATCTCCCTCAGGTTATT+AGG 0.276724 3.3:+12647045 MS.gene039828:intron
AAAGAATGTTGCAGCTGAAC+TGG 0.317538 3.3:+12647551 MS.gene039828:CDS
TCACCTTATTGTGTCGCAAC+AGG 0.329051 3.3:+12647603 MS.gene039828:CDS
AACCCTGTTGCGACACAATA+AGG 0.340692 3.3:-12647606 None:intergenic
AACGATGCTTTCTCCAATTC+CGG 0.343919 3.3:-12647097 None:intergenic
ATGTCCACATTGCGGATATC+AGG 0.353991 3.3:-12647342 None:intergenic
ATCCTCAGTTCGCTCGTCCT+CGG 0.355717 3.3:-12647646 None:intergenic
TCCATCGCTGTCGCTAAATT+CGG 0.356261 3.3:+12647270 MS.gene039828:CDS
ACAAGGTGCTCCGGAAATTC+CGG 0.362111 3.3:-12647319 None:intergenic
ACTGGTGGAGCCTCCGGAAT+TGG 0.363206 3.3:+12647084 MS.gene039828:CDS
GGTAAAGTCGCTGTGGTAAC+TGG 0.398077 3.3:+12647066 MS.gene039828:CDS
TGTCGCAACAGGGTTGGCTT+TGG 0.407028 3.3:+12647614 MS.gene039828:CDS
TCCTCAGTTCGCTCGTCCTC+GGG 0.411693 3.3:-12647645 None:intergenic
CTTTGATTCCTTAAGTGATC+CGG 0.413172 3.3:+12647188 MS.gene039828:CDS
AGCAGAAGTGGAAGCATTGA+TGG 0.419475 3.3:-12644703 None:intergenic
GCAAGCTCCTTAGGAGGGTT+AGG 0.430890 3.3:+12647483 MS.gene039828:CDS
CATTAGTATTACCTTTGTGC+TGG 0.439545 3.3:-12644726 None:intergenic
TCCAAGGTCGTCTTGGACAT+CGG 0.440509 3.3:-12647157 None:intergenic
TAGCACCATGGGTATGGAAT+AGG 0.450060 3.3:-12647122 None:intergenic
AGTATTTAACATAAATGTAA+AGG 0.453129 3.3:+12647380 MS.gene039828:CDS
TCAAGTGTAGCAAGCTCCTT+AGG 0.457194 3.3:+12647474 MS.gene039828:CDS
GGAGAGAATCTGATGGTTGA+TGG 0.464560 3.3:+12647792 MS.gene039828:CDS
TAATCCCCACACAGCATGCT+TGG 0.473559 3.3:-12647526 None:intergenic
GTGGTAACTGGTGGAGCCTC+CGG 0.474243 3.3:+12647078 MS.gene039828:CDS
GATGATGCAAAGTATATAAG+TGG 0.480032 3.3:+12647771 MS.gene039828:CDS
AAGAATGTTGCAGCTGAACT+GGG 0.488715 3.3:+12647552 MS.gene039828:CDS
GTATTTAACATAAATGTAAA+GGG 0.489627 3.3:+12647381 MS.gene039828:CDS
GCTTCTGTCCAAGGTCGTCT+TGG 0.493536 3.3:-12647164 None:intergenic
AAACTTTAGCACCATGGGTA+TGG 0.496130 3.3:-12647128 None:intergenic
GAGCAGCATGTTTCATTCCA+TGG 0.496219 3.3:-12647410 None:intergenic
GACATCATGGTCAACAATGC+CGG 0.499370 3.3:+12647300 MS.gene039828:CDS
CCTTTGTGCTGGAGCAGAAG+TGG 0.509683 3.3:-12644715 None:intergenic
CCATTGTGATGTCGCGGTAG+AGG 0.514187 3.3:+12647227 MS.gene039828:CDS
AGGTTCCAAGCATGCTGTGT+GGG 0.524350 3.3:+12647521 MS.gene039828:CDS
CGAACTGAGGATGCCATGGC+TGG 0.526242 3.3:+12647657 MS.gene039828:CDS
GATATCAGGACAAGGTGCTC+CGG 0.531705 3.3:-12647328 None:intergenic
CACAGTTCACTCTTATTCCG+TGG 0.532809 3.3:-12647578 None:intergenic
TATCTGATCCCAAATAAAAG+TGG 0.535003 3.3:+12647435 MS.gene039828:CDS
TGATATCCGCAATGTGGACA+TGG 0.549030 3.3:+12647344 MS.gene039828:CDS
ATGCGGTCCTAACCCTCCTA+AGG 0.551278 3.3:-12647490 None:intergenic
AATCAAAGAGCTTCTGTCCA+AGG 0.553131 3.3:-12647173 None:intergenic
ATTCGGCACTCTAGACATCA+TGG 0.560079 3.3:+12647287 MS.gene039828:CDS
TTATTGTGTCGCAACAGGGT+TGG 0.565856 3.3:+12647608 MS.gene039828:CDS
GCCGAATTTAGCGACAGCGA+TGG 0.567679 3.3:-12647271 None:intergenic
AGTGTAGCAAGCTCCTTAGG+AGG 0.569352 3.3:+12647477 MS.gene039828:CDS
CACCTTATTGTGTCGCAACA+GGG 0.569431 3.3:+12647604 MS.gene039828:CDS
GCCGATGTCCAAGACGACCT+TGG 0.579145 3.3:+12647156 MS.gene039828:CDS
GGCTTTGGCTCATTTGCCCG+AGG 0.583998 3.3:+12647629 MS.gene039828:CDS
ACTTTGCATCATCACTTGCA+AGG 0.589403 3.3:-12647761 None:intergenic
CGAGCGAACTGAGGATGCCA+TGG 0.595747 3.3:+12647653 MS.gene039828:CDS
GTTCGCCTATTCCATACCCA+TGG 0.598440 3.3:+12647117 MS.gene039828:CDS
TATACAAACTTTAGCACCAT+GGG 0.600611 3.3:-12647133 None:intergenic
GTGTAGCAAGCTCCTTAGGA+GGG 0.600708 3.3:+12647478 MS.gene039828:CDS
TTAGGAGGGTTAGGACCGCA+TGG 0.606894 3.3:+12647492 MS.gene039828:CDS
AAAGTCGCTGTGGTAACTGG+TGG 0.611046 3.3:+12647069 MS.gene039828:CDS
GCCCGAGGACGAGCGAACTG+AGG 0.619612 3.3:+12647644 MS.gene039828:CDS
GGTTCCAAGCATGCTGTGTG+GGG 0.621291 3.3:+12647522 MS.gene039828:CDS
AAAAGAACGAAAACCAGCCA+TGG 0.626631 3.3:-12647670 None:intergenic
ATCACTTGCAAGGAAGAGCA+CGG 0.637744 3.3:-12647751 None:intergenic
GATGCTTTCTCCAATTCCGG+AGG 0.641055 3.3:-12647094 None:intergenic
CCTCTACCGCGACATCACAA+TGG 0.645195 3.3:-12647227 None:intergenic
TTAGGACCGCATGGATACAC+AGG 0.646426 3.3:+12647501 MS.gene039828:CDS
GCAGCTGAACTGGGGAACCA+CGG 0.648918 3.3:+12647561 MS.gene039828:CDS
CCACTTCTGCTCCAGCACAA+AGG 0.656042 3.3:+12644715 MS.gene039828:CDS
AGAGTTAACTGCTGACGATG+TGG 0.658705 3.3:+12647722 MS.gene039828:CDS
TATAAGTGGAGAGAATCTGA+TGG 0.659662 3.3:+12647785 MS.gene039828:CDS
CTATACAAACTTTAGCACCA+TGG 0.660195 3.3:-12647134 None:intergenic
AGAATGTTGCAGCTGAACTG+GGG 0.661442 3.3:+12647553 MS.gene039828:CDS
CAGGTTCCAAGCATGCTGTG+TGG 0.666698 3.3:+12647520 MS.gene039828:CDS
GAGAATCTGATGGTTGATGG+AGG 0.675115 3.3:+12647795 MS.gene039828:CDS
TTGTCCTGATATCCGCAATG+TGG 0.677376 3.3:+12647338 MS.gene039828:CDS
ATTCCGCCATGTCCACATTG+CGG 0.679257 3.3:-12647350 None:intergenic
GTTATTAGGTAAAGTCGCTG+TGG 0.686687 3.3:+12647059 MS.gene039828:CDS
TTTCGTCCATTGTGATGTCG+CGG 0.702507 3.3:+12647221 MS.gene039828:CDS
GACAGCGATGGATACTGCAG+TGG 0.704928 3.3:-12647259 None:intergenic
TATCCGCAATGTGGACATGG+CGG 0.711517 3.3:+12647347 MS.gene039828:CDS
ACATTGCGGATATCAGGACA+AGG 0.713879 3.3:-12647336 None:intergenic
TTGGAACCTGTGTATCCATG+CGG 0.754889 3.3:-12647507 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATGAGAATTTATAATGT+AGG + chr3.3:12646354-12646373 MS.gene039828:intron 15.0%
!! AAAGTAATTCTAACTAAAAA+TGG - chr3.3:12645535-12645554 None:intergenic 15.0%
!! AGATCTAAATTAATGTTTAT+TGG + chr3.3:12645214-12645233 MS.gene039828:intron 15.0%
!! AGTATTTAACATAAATGTAA+AGG + chr3.3:12647380-12647399 MS.gene039828:CDS 15.0%
!! GATCTAAATTAATGTTTATT+GGG + chr3.3:12645215-12645234 MS.gene039828:intron 15.0%
!! GTATTTAACATAAATGTAAA+GGG + chr3.3:12647381-12647400 MS.gene039828:CDS 15.0%
!!! ATGATAAATCTAAAATTCAT+AGG - chr3.3:12645867-12645886 None:intergenic 15.0%
!! AAGAAATTGAAGCTAATATT+TGG + chr3.3:12646526-12646545 MS.gene039828:intron 20.0%
!! CAAAAAGGATAATTTAATGA+AGG + chr3.3:12646655-12646674 MS.gene039828:intron 20.0%
!! TATATACCAAAATATAGACA+TGG - chr3.3:12645628-12645647 None:intergenic 20.0%
!! TGTTAAGAAGAAAAAAAAGA+GGG - chr3.3:12645066-12645085 None:intergenic 20.0%
!! TTGTTAAGAAGAAAAAAAAG+AGG - chr3.3:12645067-12645086 None:intergenic 20.0%
!!! AATTCTTATCAAGACTTTTT+TGG + chr3.3:12644823-12644842 MS.gene039828:intron 20.0%
!!! ATGAAGTTCTTTTTTTGTTT+TGG - chr3.3:12645759-12645778 None:intergenic 20.0%
!!! ATTCTTATCAAGACTTTTTT+GGG + chr3.3:12644824-12644843 MS.gene039828:intron 20.0%
!!! TGATTATCTAGAATTGATTT+TGG - chr3.3:12645561-12645580 None:intergenic 20.0%
!!! TTAAACTTACTTTTACATGA+AGG + chr3.3:12645495-12645514 MS.gene039828:intron 20.0%
!!! TTATGAAGGAATTTGAATTT+TGG - chr3.3:12645897-12645916 None:intergenic 20.0%
! AAATTCCTTCATAATGAGAT+TGG + chr3.3:12645903-12645922 MS.gene039828:intron 25.0%
! AACATGTCAGAATCAATTAT+AGG - chr3.3:12645363-12645382 None:intergenic 25.0%
! AATGAAGGTTGAATCAATTT+AGG + chr3.3:12646670-12646689 MS.gene039828:intron 25.0%
! AGTTATGTATTACTCAGATA+TGG + chr3.3:12646555-12646574 MS.gene039828:intron 25.0%
! CTTGGCATGAAAAAAAATTA+TGG + chr3.3:12646284-12646303 MS.gene039828:intron 25.0%
! TAATTCAGAAATCAGTGATA+TGG - chr3.3:12646875-12646894 None:intergenic 25.0%
! TATAACCAATCTCATTATGA+AGG - chr3.3:12645911-12645930 None:intergenic 25.0%
! TCATAGGAATCACATTATTT+GGG - chr3.3:12645851-12645870 None:intergenic 25.0%
! TGAGAATTTATAATGTAGGT+AGG + chr3.3:12646358-12646377 MS.gene039828:intron 25.0%
! TTCATAGGAATCACATTATT+TGG - chr3.3:12645852-12645871 None:intergenic 25.0%
! TTCTAACTAAAAATGGTTTG+TGG - chr3.3:12645528-12645547 None:intergenic 25.0%
!! AAGTAAGTAAATTCTAGCTA+AGG - chr3.3:12646728-12646747 None:intergenic 25.0%
!! AGCATGATGATTTTATATGT+TGG - chr3.3:12646406-12646425 None:intergenic 25.0%
!! GAGATTGGTTATATAATTTG+AGG + chr3.3:12645918-12645937 MS.gene039828:intron 25.0%
!! TTTTGGACACTAGAAATTTA+CGG + chr3.3:12645967-12645986 MS.gene039828:intron 25.0%
!!! ATTATTGAGCCACTTTTATT+TGG - chr3.3:12647447-12647466 None:intergenic 25.0%
!!! ATTTGAATTCTTCAAGTTGT+TGG + chr3.3:12644992-12645011 MS.gene039828:intron 25.0%
!!! TAATTTGCTACTAATATCTG+AGG + chr3.3:12646594-12646613 MS.gene039828:intron 25.0%
!!! TATCACTGATTTCTGAATTA+TGG + chr3.3:12646875-12646894 MS.gene039828:intron 25.0%
!!! TTATTGAGCCACTTTTATTT+GGG - chr3.3:12647446-12647465 None:intergenic 25.0%
!!! TTTTCATTGAGAGTATGTTT+GGG + chr3.3:12645258-12645277 MS.gene039828:intron 25.0%
ATAGGAATCACATTATTTGG+GGG - chr3.3:12645849-12645868 None:intergenic 30.0%
ATTTCTTCAACCAAGAAGTA+GGG + chr3.3:12646152-12646171 MS.gene039828:intron 30.0%
CATAGGAATCACATTATTTG+GGG - chr3.3:12645850-12645869 None:intergenic 30.0%
CTTTAGACCTACAAATATGT+TGG - chr3.3:12646183-12646202 None:intergenic 30.0%
GATGATGCAAAGTATATAAG+TGG + chr3.3:12647771-12647790 MS.gene039828:CDS 30.0%
GATTTCTGAATTATGGATTC+TGG + chr3.3:12646882-12646901 MS.gene039828:intron 30.0%
TATACAAACTTTAGCACCAT+GGG - chr3.3:12647136-12647155 None:intergenic 30.0%
TATCTGATCCCAAATAAAAG+TGG + chr3.3:12647435-12647454 MS.gene039828:CDS 30.0%
TATTTCTTCAACCAAGAAGT+AGG + chr3.3:12646151-12646170 MS.gene039828:intron 30.0%
! GTTTAACTTCCATAGTAAGA+CGG + chr3.3:12646101-12646120 MS.gene039828:intron 30.0%
! TGGACGAAAAAAACATTTTC+CGG - chr3.3:12647210-12647229 None:intergenic 30.0%
!! ACTTACTTTTGACCAAATTC+AGG + chr3.3:12646740-12646759 MS.gene039828:intron 30.0%
!! GTTTTCATTGAGAGTATGTT+TGG + chr3.3:12645257-12645276 MS.gene039828:intron 30.0%
!! TCTTGTATTTTAGATGAGCT+TGG + chr3.3:12646266-12646285 MS.gene039828:intron 30.0%
!!! TGAATTATGGATTCTGGTTT+TGG + chr3.3:12646888-12646907 MS.gene039828:intron 30.0%
AACAAATAAGAGATCTGCTG+AGG + chr3.3:12644967-12644986 MS.gene039828:intron 35.0%
AATGATTGAAACACTGAGAG+TGG - chr3.3:12647005-12647024 None:intergenic 35.0%
AGAAGGACTATGTGTATGTT+TGG + chr3.3:12645291-12645310 MS.gene039828:intron 35.0%
AGCGAACCATAGTTTAAATC+CGG + chr3.3:12646201-12646220 MS.gene039828:intron 35.0%
AGGGTTACGACAAAAAAGTA+TGG + chr3.3:12646794-12646813 MS.gene039828:intron 35.0%
ATCAAAACATCCAGATCCTA+AGG - chr3.3:12646328-12646347 None:intergenic 35.0%
CATTAGTATTACCTTTGTGC+TGG - chr3.3:12644729-12644748 None:intergenic 35.0%
CATTGTGTCACAGATAAACA+TGG - chr3.3:12646935-12646954 None:intergenic 35.0%
CTATACAAACTTTAGCACCA+TGG - chr3.3:12647137-12647156 None:intergenic 35.0%
CTTTGATTCCTTAAGTGATC+CGG + chr3.3:12647188-12647207 MS.gene039828:CDS 35.0%
GACCAAATTCAGGATTAACA+GGG + chr3.3:12646750-12646769 MS.gene039828:intron 35.0%
GACCTACAAATATGTTGGAT+CGG - chr3.3:12646178-12646197 None:intergenic 35.0%
GACTTTACCTAATAACCTGA+GGG - chr3.3:12647055-12647074 None:intergenic 35.0%
GCTTCAACTAGAATCACTTA+TGG - chr3.3:12645417-12645436 None:intergenic 35.0%
GGATGTATCACGCAAATAAT+TGG - chr3.3:12645342-12645361 None:intergenic 35.0%
TATAAGTGGAGAGAATCTGA+TGG + chr3.3:12647785-12647804 MS.gene039828:CDS 35.0%
TATCACGCAAATAATTGGTC+TGG - chr3.3:12645337-12645356 None:intergenic 35.0%
TCAACTAGAATCACTTATGG+AGG - chr3.3:12645414-12645433 None:intergenic 35.0%
TGACCAAATTCAGGATTAAC+AGG + chr3.3:12646749-12646768 MS.gene039828:intron 35.0%
TGTGTGTTTAGTTGTGAAGT+GGG - chr3.3:12645605-12645624 None:intergenic 35.0%
! AACATTTTCCGGATCACTTA+AGG - chr3.3:12647199-12647218 None:intergenic 35.0%
! AAGTGATTCTAGTTGAAGCT+AGG + chr3.3:12645418-12645437 MS.gene039828:intron 35.0%
! AATGTAAAGGGAGTTTTCCA+TGG + chr3.3:12647393-12647412 MS.gene039828:CDS 35.0%
! CACACACCATGTCTATATTT+TGG + chr3.3:12645619-12645638 MS.gene039828:intron 35.0%
! GGGTTACGACAAAAAAGTAT+GGG + chr3.3:12646795-12646814 MS.gene039828:intron 35.0%
!! TCTTCAAGTTGTTGGCTTTA+TGG + chr3.3:12645000-12645019 MS.gene039828:intron 35.0%
!!! GATTTCTCAGGCATGTTTTT+TGG + chr3.3:12645950-12645969 MS.gene039828:intron 35.0%
!!! TCCTTTTTGAACTTTGAGAC+CGG - chr3.3:12646644-12646663 None:intergenic 35.0%
AAAAGAACGAAAACCAGCCA+TGG - chr3.3:12647673-12647692 None:intergenic 40.0%
AAACATCCAGATCCTAAGGA+TGG - chr3.3:12646324-12646343 None:intergenic 40.0%
AAACTTTAGCACCATGGGTA+TGG - chr3.3:12647131-12647150 None:intergenic 40.0%
AAAGAATGTTGCAGCTGAAC+TGG + chr3.3:12647551-12647570 MS.gene039828:CDS 40.0%
AACGATGCTTTCTCCAATTC+CGG - chr3.3:12647100-12647119 None:intergenic 40.0%
AAGAATGTTGCAGCTGAACT+GGG + chr3.3:12647552-12647571 MS.gene039828:CDS 40.0%
AATCAAAGAGCTTCTGTCCA+AGG - chr3.3:12647176-12647195 None:intergenic 40.0%
ACCGGTCTCAAAGTTCAAAA+AGG + chr3.3:12646640-12646659 MS.gene039828:intron 40.0%
ACTTTGCATCATCACTTGCA+AGG - chr3.3:12647764-12647783 None:intergenic 40.0%
CCATAGTTTAAATCCGGTGT+AGG + chr3.3:12646207-12646226 MS.gene039828:intron 40.0%
CCTACACCGGATTTAAACTA+TGG - chr3.3:12646210-12646229 None:intergenic 40.0%
CGACTTTACCTAATAACCTG+AGG - chr3.3:12647056-12647075 None:intergenic 40.0%
CTTATTAAACCAGCACAGCA+GGG - chr3.3:12646019-12646038 None:intergenic 40.0%
GACCCTGTTAATCCTGAATT+TGG - chr3.3:12646755-12646774 None:intergenic 40.0%
GGTTGTGTCACAGATAAACA+TGG - chr3.3:12646914-12646933 None:intergenic 40.0%
GTGTGTGTTTAGTTGTGAAG+TGG - chr3.3:12645606-12645625 None:intergenic 40.0%
GTTATTAGGTAAAGTCGCTG+TGG + chr3.3:12647059-12647078 MS.gene039828:CDS 40.0%
TCAACCTTCAAATCTTCCAC+CGG + chr3.3:12646622-12646641 MS.gene039828:intron 40.0%
TCTATCTCCCTCAGGTTATT+AGG + chr3.3:12647045-12647064 MS.gene039828:intron 40.0%
TCTGGTACTCAATGTAGAAG+TGG - chr3.3:12645319-12645338 None:intergenic 40.0%
TCTTATTAAACCAGCACAGC+AGG - chr3.3:12646020-12646039 None:intergenic 40.0%
! TCATTGAGAGTATGTTTGGG+TGG + chr3.3:12645261-12645280 MS.gene039828:intron 40.0%
!! AGGATTTCTGCTGATTTCTC+AGG + chr3.3:12645938-12645957 MS.gene039828:intron 40.0%
!! CTGGTTTTCGTTCTTTTGTC+GGG + chr3.3:12647676-12647695 MS.gene039828:CDS 40.0%
!!! GCTGGTTTTCGTTCTTTTGT+CGG + chr3.3:12647675-12647694 MS.gene039828:CDS 40.0%
!!! TTTTTGAACTTTGAGACCGG+TGG - chr3.3:12646641-12646660 None:intergenic 40.0%
AACCCTGTTGCGACACAATA+AGG - chr3.3:12647609-12647628 None:intergenic 45.0%
ACATTGCGGATATCAGGACA+AGG - chr3.3:12647339-12647358 None:intergenic 45.0%
AGAATGTTGCAGCTGAACTG+GGG + chr3.3:12647553-12647572 MS.gene039828:CDS 45.0%
AGAGTTAACTGCTGACGATG+TGG + chr3.3:12647722-12647741 MS.gene039828:CDS 45.0%
ATCACTTGCAAGGAAGAGCA+CGG - chr3.3:12647754-12647773 None:intergenic 45.0%
ATGAGAGAGCCAAGTACACA+AGG - chr3.3:12645823-12645842 None:intergenic 45.0%
ATGTCCACATTGCGGATATC+AGG - chr3.3:12647345-12647364 None:intergenic 45.0%
ATTCGGCACTCTAGACATCA+TGG + chr3.3:12647287-12647306 MS.gene039828:CDS 45.0%
CAAGTACACAAGGCTAAGGT+TGG - chr3.3:12645813-12645832 None:intergenic 45.0%
CACAGTTCACTCTTATTCCG+TGG - chr3.3:12647581-12647600 None:intergenic 45.0%
CACCTTATTGTGTCGCAACA+GGG + chr3.3:12647604-12647623 MS.gene039828:CDS 45.0%
GACATCATGGTCAACAATGC+CGG + chr3.3:12647300-12647319 MS.gene039828:CDS 45.0%
GAGCAGCATGTTTCATTCCA+TGG - chr3.3:12647413-12647432 None:intergenic 45.0%
GATTCTTCGCCGTCTTACTA+TGG - chr3.3:12646113-12646132 None:intergenic 45.0%
GGAGAGAATCTGATGGTTGA+TGG + chr3.3:12647792-12647811 MS.gene039828:CDS 45.0%
GGCCGATCCAACATATTTGT+AGG + chr3.3:12646173-12646192 MS.gene039828:intron 45.0%
GTCAACAATGCCGGAATTTC+CGG + chr3.3:12647309-12647328 MS.gene039828:CDS 45.0%
GTTTGGGTGGAAGGTTTAGA+AGG + chr3.3:12645274-12645293 MS.gene039828:intron 45.0%
TAGCACCATGGGTATGGAAT+AGG - chr3.3:12647125-12647144 None:intergenic 45.0%
TCAAGTGTAGCAAGCTCCTT+AGG + chr3.3:12647474-12647493 MS.gene039828:CDS 45.0%
TCACCTTATTGTGTCGCAAC+AGG + chr3.3:12647603-12647622 MS.gene039828:CDS 45.0%
TCCATCGCTGTCGCTAAATT+CGG + chr3.3:12647270-12647289 MS.gene039828:CDS 45.0%
TGATATCCGCAATGTGGACA+TGG + chr3.3:12647344-12647363 MS.gene039828:CDS 45.0%
TTATTGTGTCGCAACAGGGT+TGG + chr3.3:12647608-12647627 MS.gene039828:CDS 45.0%
TTGGAACCTGTGTATCCATG+CGG - chr3.3:12647510-12647529 None:intergenic 45.0%
TTGTCCTGATATCCGCAATG+TGG + chr3.3:12647338-12647357 MS.gene039828:CDS 45.0%
TTTCGTCCATTGTGATGTCG+CGG + chr3.3:12647221-12647240 MS.gene039828:CDS 45.0%
! TGAGAGTATGTTTGGGTGGA+AGG + chr3.3:12645265-12645284 MS.gene039828:intron 45.0%
!! AGCAGAAGTGGAAGCATTGA+TGG - chr3.3:12644706-12644725 None:intergenic 45.0%
!! CAACCTTAGCCTTGTGTACT+TGG + chr3.3:12645811-12645830 MS.gene039828:intron 45.0%
!! GAGAATCTGATGGTTGATGG+AGG + chr3.3:12647795-12647814 MS.gene039828:CDS 45.0%
AAAGTCGCTGTGGTAACTGG+TGG + chr3.3:12647069-12647088 MS.gene039828:CDS 50.0%
AATCCGGTGTAGGACTTTCG+CGG + chr3.3:12646217-12646236 MS.gene039828:intron 50.0%
AGGTTCCAAGCATGCTGTGT+GGG + chr3.3:12647521-12647540 MS.gene039828:CDS 50.0%
AGTGTAGCAAGCTCCTTAGG+AGG + chr3.3:12647477-12647496 MS.gene039828:CDS 50.0%
ATCCAGATCCTAAGGATGGC+TGG - chr3.3:12646320-12646339 None:intergenic 50.0%
ATTCCGCCATGTCCACATTG+CGG - chr3.3:12647353-12647372 None:intergenic 50.0%
GAGACCGGTGGAAGATTTGA+AGG - chr3.3:12646629-12646648 None:intergenic 50.0%
GAGCCAAGTACACAAGGCTA+AGG - chr3.3:12645817-12645836 None:intergenic 50.0%
GATGCTTTCTCCAATTCCGG+AGG - chr3.3:12647097-12647116 None:intergenic 50.0%
GGGAAAAACGCGAACTTGCA+GGG + chr3.3:12647696-12647715 MS.gene039828:CDS 50.0%
GGTAAAGTCGCTGTGGTAAC+TGG + chr3.3:12647066-12647085 MS.gene039828:CDS 50.0%
GTCTGCTATCTATCTCCCTC+AGG + chr3.3:12647037-12647056 MS.gene039828:intron 50.0%
GTGTAGCAAGCTCCTTAGGA+GGG + chr3.3:12647478-12647497 MS.gene039828:CDS 50.0%
GTTCGCCTATTCCATACCCA+TGG + chr3.3:12647117-12647136 MS.gene039828:CDS 50.0%
TAACAGGGTCCCTTTCCCAT+CGG + chr3.3:12646765-12646784 MS.gene039828:intron 50.0%
TAATCCCCACACAGCATGCT+TGG - chr3.3:12647529-12647548 None:intergenic 50.0%
TACCAGCCATCCTTAGGATC+TGG + chr3.3:12646315-12646334 MS.gene039828:intron 50.0%
TATCCGCAATGTGGACATGG+CGG + chr3.3:12647347-12647366 MS.gene039828:CDS 50.0%
TCCAAGGTCGTCTTGGACAT+CGG - chr3.3:12647160-12647179 None:intergenic 50.0%
TGATGCTACCAGCCATCCTT+AGG + chr3.3:12646309-12646328 MS.gene039828:intron 50.0%
TTAGGACCGCATGGATACAC+AGG + chr3.3:12647501-12647520 MS.gene039828:CDS 50.0%
! ACAAGGTGCTCCGGAAATTC+CGG - chr3.3:12647322-12647341 None:intergenic 50.0%
! GATATCAGGACAAGGTGCTC+CGG - chr3.3:12647331-12647350 None:intergenic 50.0%
!!! AGTTTTTTGCCCTGCTGTGC+TGG + chr3.3:12646007-12646026 MS.gene039828:intron 50.0%
ATCCTCAGTTCGCTCGTCCT+CGG - chr3.3:12647649-12647668 None:intergenic 55.0%
ATGCGGTCCTAACCCTCCTA+AGG - chr3.3:12647493-12647512 None:intergenic 55.0%
CAGGTTCCAAGCATGCTGTG+TGG + chr3.3:12647520-12647539 MS.gene039828:CDS 55.0%
CCACTTCTGCTCCAGCACAA+AGG + chr3.3:12644715-12644734 MS.gene039828:CDS 55.0%
CCATTGTGATGTCGCGGTAG+AGG + chr3.3:12647227-12647246 MS.gene039828:CDS 55.0%
CCTCCGATTCCGATGGGAAA+GGG - chr3.3:12646777-12646796 None:intergenic 55.0%
CCTCTACCGCGACATCACAA+TGG - chr3.3:12647230-12647249 None:intergenic 55.0%
CCTTTCCCATCGGAATCGGA+GGG + chr3.3:12646775-12646794 MS.gene039828:intron 55.0%
CCTTTGTGCTGGAGCAGAAG+TGG - chr3.3:12644718-12644737 None:intergenic 55.0%
CGGGAAAAACGCGAACTTGC+AGG + chr3.3:12647695-12647714 MS.gene039828:CDS 55.0%
CGTAACCCTCCGATTCCGAT+GGG - chr3.3:12646783-12646802 None:intergenic 55.0%
GACAGCGATGGATACTGCAG+TGG - chr3.3:12647262-12647281 None:intergenic 55.0%
GCAAGCTCCTTAGGAGGGTT+AGG + chr3.3:12647483-12647502 MS.gene039828:CDS 55.0%
GCCGAATTTAGCGACAGCGA+TGG - chr3.3:12647274-12647293 None:intergenic 55.0%
GCTTCTGTCCAAGGTCGTCT+TGG - chr3.3:12647167-12647186 None:intergenic 55.0%
GGTCCCTTTCCCATCGGAAT+CGG + chr3.3:12646771-12646790 MS.gene039828:intron 55.0%
GGTTCCAAGCATGCTGTGTG+GGG + chr3.3:12647522-12647541 MS.gene039828:CDS 55.0%
GTTGGATCGGCCCTACTTCT+TGG - chr3.3:12646165-12646184 None:intergenic 55.0%
TCGTAACCCTCCGATTCCGA+TGG - chr3.3:12646784-12646803 None:intergenic 55.0%
TTAGGAGGGTTAGGACCGCA+TGG + chr3.3:12647492-12647511 MS.gene039828:CDS 55.0%
!! TGTCGCAACAGGGTTGGCTT+TGG + chr3.3:12647614-12647633 MS.gene039828:CDS 55.0%
ACTGGTGGAGCCTCCGGAAT+TGG + chr3.3:12647084-12647103 MS.gene039828:CDS 60.0%
CCCTCCGATTCCGATGGGAA+AGG - chr3.3:12646778-12646797 None:intergenic 60.0%
CCCTTTCCCATCGGAATCGG+AGG + chr3.3:12646774-12646793 MS.gene039828:intron 60.0%
CGAACTGAGGATGCCATGGC+TGG + chr3.3:12647657-12647676 MS.gene039828:CDS 60.0%
CGAGCGAACTGAGGATGCCA+TGG + chr3.3:12647653-12647672 MS.gene039828:CDS 60.0%
GCACCGCGAAAGTCCTACAC+CGG - chr3.3:12646223-12646242 None:intergenic 60.0%
GCAGCTGAACTGGGGAACCA+CGG + chr3.3:12647561-12647580 MS.gene039828:CDS 60.0%
GCCGATGTCCAAGACGACCT+TGG + chr3.3:12647156-12647175 MS.gene039828:CDS 60.0%
GTGGTAACTGGTGGAGCCTC+CGG + chr3.3:12647078-12647097 MS.gene039828:CDS 60.0%
TCCTCAGTTCGCTCGTCCTC+GGG - chr3.3:12647648-12647667 None:intergenic 60.0%
! GGCTTTGGCTCATTTGCCCG+AGG + chr3.3:12647629-12647648 MS.gene039828:CDS 60.0%
GCCCGAGGACGAGCGAACTG+AGG + chr3.3:12647644-12647663 MS.gene039828:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 12644693 12647857 12644693 ID=MS.gene039828
chr3.3 mRNA 12644693 12647857 12644693 ID=MS.gene039828.t1;Parent=MS.gene039828
chr3.3 exon 12644693 12644736 12644693 ID=MS.gene039828.t1.exon1;Parent=MS.gene039828.t1
chr3.3 CDS 12644693 12644736 12644693 ID=cds.MS.gene039828.t1;Parent=MS.gene039828.t1
chr3.3 exon 12647059 12647857 12647059 ID=MS.gene039828.t1.exon2;Parent=MS.gene039828.t1
chr3.3 CDS 12647059 12647857 12647059 ID=cds.MS.gene039828.t1;Parent=MS.gene039828.t1
Gene Sequence

>MS.gene039828

ATGTCAACTGCCATCAATGCTTCCACTTCTGCTCCAGCACAAAGGTAATACTAATGATAGATTATTCAGTTCACAATATTACTTTATTTTTCAGTCTTATTCTGAGTTTTGAATCTATTTCATACATGCAAATTCTTATCAAGACTTTTTTGGGTATAGTTTGAGAGCTTCTGTTTTTATTTATTTAAGAAAAAATGTCGTCAAATTTTTTGTCAGCTTTTGACATGATAACTGTGTGTTGACTAAGTTTGTCTGTTTAATTATTATTGATTTTAACAAATAAGAGATCTGCTGAGGTTATTTGAATTCTTCAAGTTGTTGGCTTTATGGTTATATTTTTACAAATTGAATTGATCTTGTTTGAATTTGACCCTCTTTTTTTTCTTCTTAACAACAATATATAAAACATATGTTGTTTGAACTTATTTGACTTATTTTTCTTAACAGCAATATATAAAAACAAATATTGTTTTTAGAAATTGATCAGATATTCATTCTTCTCTCAATGCTAGTTTAGTCTTAGATCTAAATTAATGTTTATTGGGTTCAAATTGTTTTATGATTGTTTTCATTGAGAGTATGTTTGGGTGGAAGGTTTAGAAGGACTATGTGTATGTTTGGTTCCACTTCTACATTGAGTACCAGACCAATTATTTGCGTGATACATCCTATAATTGATTCTGACATGTTTGATTTTTGTTGATTAGAATTGATTCTGCCTCCATAAGTGATTCTAGTTGAAGCTAGGATTTGTAGCTTTTGATTATAGAATTGATTTTCACAAAAAAAAAAAAAATTATAATTAAACTTACTTTTACATGAAGGTATCAAACCACAAACCATTTTTAGTTAGAATTACTTTTAACCAAAATCAATTCTAGATAATCAATTCTCTCGAAATCAATTCTTCCCACTTCACAACTAAACACACACCATGTCTATATTTTGGTATATATTTGAGATTCGAAAAAATTGAAAGAATAGTATGATAGATGATCATATAACATTTTAAGAGCACTTAATTTATTTTAAAGCATTTTATAACTTCTTTAATTTTACTTGACCAAAACAAAAAAAGAACTTCATTAATTTAGAAAAGAGAAAAAAAGTGTCATTTCCAACCTTAGCCTTGTGTACTTGGCTCTCTCATTGTCCCCCAAATAATGTGATTCCTATGAATTTTAGATTTATCATTTCTGAGCCAAAATTCAAATTCCTTCATAATGAGATTGGTTATATAATTTGAGGATTTCTGCTGATTTCTCAGGCATGTTTTTTGGACACTAGAAATTTACGGTACTTGTTCAGAATGTTAGTTTTTTGCCCTGCTGTGCTGGTTTAATAAGAATTGAAGATAATAAAATATAGCGTAAGAGAGAGCAAAAGTAAATAGATATTGATCAATTATGTTTAACTTCCATAGTAAGACGGCGAAGAATCAATGAGTTTATCTCTCTGTATTTCTTCAACCAAGAAGTAGGGCCGATCCAACATATTTGTAGGTCTAAAGCGAACCATAGTTTAAATCCGGTGTAGGACTTTCGCGGTGCTATTTTTATATTTTCACAAGTTTTCTTGTATTTTAGATGAGCTTGGCATGAAAAAAAATTATGGTATGATGCTACCAGCCATCCTTAGGATCTGGATGTTTTGATCATAATAAAATGAGAATTTATAATGTAGGTAGGTGCTGAATCTGCTGATCATGCACCAACATATAAAATCATCATGCTTGTATGATGTATTGTTTGAATGATCAATGACATTGAAAGCAAAGACTAAAGTATGATTAATCGTTCTTATTATTTTCTTATATGCTAAGTTCATCTGTACAAGAAATTGAAGCTAATATTTGGTTATTAAGTTATGTATTACTCAGATATGGTTTTAAATTTTATATCTAATTTGCTACTAATATCTGAGGTTTCTTCAACCTTCAAATCTTCCACCGGTCTCAAAGTTCAAAAAGGATAATTTAATGAAGGTTGAATCAATTTAGGAGTATCTAAGCTTAGACTATGACTAGAACAATCCTTAGCTAGAATTTACTTACTTTTGACCAAATTCAGGATTAACAGGGTCCCTTTCCCATCGGAATCGGAGGGTTACGACAAAAAAGTATGGGAAAACACTGTCTTTTACAAGTGAAAAAATCTAGAAATATTTAGCTGTTTTATTTCCATATCACTGATTTCTGAATTATGGATTCTGGTTTTGGCCATGTTTATCTGTGACACAACCATGTTTATCTGTGACACAATGACGCATTCTATAATATAATGTTTCTTTAAGTTTTCAGTTATTGTTAACCACTCTCAGTGTTTCAATCATTTGAGTTAAAGTTGTCTGCTATCTATCTCCCTCAGGTTATTAGGTAAAGTCGCTGTGGTAACTGGTGGAGCCTCCGGAATTGGAGAAAGCATCGTTCGCCTATTCCATACCCATGGTGCTAAAGTTTGTATAGCCGATGTCCAAGACGACCTTGGACAGAAGCTCTTTGATTCCTTAAGTGATCCGGAAAATGTTTTTTTCGTCCATTGTGATGTCGCGGTAGAGGCTGATGTCTCCACTGCAGTATCCATCGCTGTCGCTAAATTCGGCACTCTAGACATCATGGTCAACAATGCCGGAATTTCCGGAGCACCTTGTCCTGATATCCGCAATGTGGACATGGCGGAATTCGACAAAGTATTTAACATAAATGTAAAGGGAGTTTTCCATGGAATGAAACATGCTGCTCAATATCTGATCCCAAATAAAAGTGGCTCAATAATTTCTATATCAAGTGTAGCAAGCTCCTTAGGAGGGTTAGGACCGCATGGATACACAGGTTCCAAGCATGCTGTGTGGGGATTAACAAAGAATGTTGCAGCTGAACTGGGGAACCACGGAATAAGAGTGAACTGTGTGTCACCTTATTGTGTCGCAACAGGGTTGGCTTTGGCTCATTTGCCCGAGGACGAGCGAACTGAGGATGCCATGGCTGGTTTTCGTTCTTTTGTCGGGAAAAACGCGAACTTGCAGGGCGTAGAGTTAACTGCTGACGATGTGGCTAATTCCGTGCTCTTCCTTGCAAGTGATGATGCAAAGTATATAAGTGGAGAGAATCTGATGGTTGATGGAGGATTCACTAGATCTAATCACTCACTCAAAGTTTTTAGATGA
Protein sequence

>MS.gene039828.t1

MSTAINASTSAPAQRLLGKVAVVTGGASGIGESIVRLFHTHGAKVCIADVQDDLGQKLFDSLSDPENVFFVHCDVAVEADVSTAVSIAVAKFGTLDIMVNNAGISGAPCPDIRNVDMAEFDKVFNINVKGVFHGMKHAAQYLIPNKSGSIISISSVASSLGGLGPHGYTGSKHAVWGLTKNVAAELGNHGIRVNCVSPYCVATGLALAHLPEDERTEDAMAGFRSFVGKNANLQGVELTADDVANSVLFLASDDAKYISGENLMVDGGFTRSNHSLKVFR