AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene50524

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50524.t1 MTR_7g094510 95.192 208 10 0 44 251 28 235 4.46e-142 399
MS.gene50524.t1 MTR_7g094520 81.731 208 38 0 44 251 33 240 5.67e-121 345
MS.gene50524.t1 MTR_1g068955 66.507 209 69 1 44 251 36 244 1.72e-89 266
MS.gene50524.t1 MTR_6g081270 67.606 71 23 0 38 108 23 93 4.05e-25 95.5
MS.gene50524.t1 MTR_3g085740 31.250 208 137 4 44 251 97 298 2.60e-22 94.0
MS.gene50524.t1 MTR_3g068070 34.302 172 104 6 84 251 74 240 1.46e-18 82.8
MS.gene50524.t1 MTR_4g064887 33.529 170 108 5 84 251 74 240 1.22e-16 77.4
MS.gene50524.t1 MTR_7g063270 32.530 166 102 4 92 251 83 244 3.57e-16 76.3
MS.gene50524.t1 MTR_7g063260 31.737 167 103 4 92 251 83 245 3.62e-16 76.3
MS.gene50524.t1 MTR_3g068085 31.214 173 108 6 84 251 74 240 4.48e-16 76.3
MS.gene50524.t1 MTR_7g063390 31.138 167 104 4 92 251 83 245 1.20e-15 74.7
MS.gene50524.t1 MTR_7g071680 36.184 152 90 4 72 219 73 221 2.26e-15 74.7
MS.gene50524.t1 MTR_7g063360 31.138 167 104 4 92 251 83 245 2.46e-15 73.9
MS.gene50524.t1 MTR_3g068155 30.636 173 109 6 84 251 78 244 4.31e-15 73.6
MS.gene50524.t1 MTR_3g068175 32.000 175 106 7 83 251 75 242 4.52e-15 73.2
MS.gene50524.t1 MTR_3g068065 32.000 175 104 7 84 251 76 242 6.66e-15 72.8
MS.gene50524.t1 MTR_7g063320 29.189 185 117 6 77 251 64 244 3.25e-14 70.9
MS.gene50524.t1 MTR_1196s0010 30.516 213 129 7 44 251 296 494 2.34e-13 69.7
MS.gene50524.t1 MTR_7g105590 32.867 143 83 5 79 215 60 195 2.68e-13 67.0
MS.gene50524.t1 MTR_3g068175 31.285 179 106 8 83 251 75 246 5.05e-13 67.8
MS.gene50524.t1 MTR_4g131740 27.746 173 122 2 79 251 101 270 7.37e-13 67.4
MS.gene50524.t1 MTR_7g107670 33.553 152 89 6 66 214 76 218 9.50e-13 67.0
MS.gene50524.t1 MTR_6g023600 26.768 198 135 5 44 238 35 225 1.38e-12 66.2
MS.gene50524.t1 MTR_6g023590 27.723 202 128 6 44 238 35 225 2.02e-12 65.9
MS.gene50524.t1 MTR_6g023610 25.455 220 152 5 38 251 29 242 3.61e-12 65.1
MS.gene50524.t1 MTR_6g023600 26.768 198 129 5 44 238 35 219 3.83e-12 64.7
MS.gene50524.t1 MTR_3g020670 39.640 111 63 2 108 216 97 205 4.05e-12 65.1
MS.gene50524.t1 MTR_6g023910 25.248 202 145 3 14 214 5 201 4.87e-12 64.7
MS.gene50524.t1 MTR_7g063330 28.659 164 111 2 92 251 82 243 9.27e-12 63.9
MS.gene50524.t1 MTR_6g023990 27.551 196 132 5 63 251 51 243 2.53e-11 62.8
MS.gene50524.t1 MTR_3g113870 28.829 222 134 7 1 214 1 206 2.61e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene50524.t1 AT5G18210 69.194 211 62 1 44 251 30 240 2.52e-100 293
MS.gene50524.t1 AT5G18210 69.194 211 62 1 44 251 30 240 3.11e-100 293
MS.gene50524.t1 AT3G03980 67.907 215 62 1 44 251 36 250 1.17e-99 292
MS.gene50524.t1 AT3G04000 59.259 216 80 1 44 251 36 251 1.08e-88 264
MS.gene50524.t1 AT4G13180 55.769 208 92 0 44 251 35 242 1.33e-80 243
MS.gene50524.t1 AT2G29290 35.294 170 105 5 84 251 49 215 2.21e-20 87.4
MS.gene50524.t1 AT2G29290 35.294 170 105 5 84 251 66 232 4.55e-20 87.0
MS.gene50524.t1 AT1G24360 28.846 208 142 4 44 251 96 297 2.56e-18 83.2
MS.gene50524.t1 AT5G06060 30.189 212 136 8 44 251 31 234 4.73e-17 78.6
MS.gene50524.t1 AT2G29350 32.203 177 116 4 76 251 28 201 1.03e-16 77.0
MS.gene50524.t1 AT2G29150 34.091 176 105 6 84 256 75 242 2.46e-16 76.6
MS.gene50524.t1 AT2G29350 32.778 180 111 6 76 251 66 239 5.88e-16 75.9
MS.gene50524.t1 AT2G29360 30.806 211 136 6 44 251 38 241 1.57e-15 74.7
MS.gene50524.t1 AT2G29260 28.571 210 142 6 44 251 90 293 1.96e-15 75.1
MS.gene50524.t1 AT1G07440 32.298 161 105 4 92 251 79 236 8.89e-15 72.4
MS.gene50524.t1 AT3G51680 33.702 181 111 6 44 219 54 230 5.34e-14 70.9
MS.gene50524.t1 AT1G54870 28.638 213 142 5 44 251 104 311 1.01e-13 70.1
MS.gene50524.t1 AT1G54870 28.638 213 142 5 44 251 106 313 1.17e-13 70.1
MS.gene50524.t1 AT1G52340 31.818 154 102 2 78 231 73 223 1.24e-13 69.3
MS.gene50524.t1 AT3G05260 26.794 209 142 5 48 251 63 265 1.46e-12 66.6
MS.gene50524.t1 AT2G29310 31.429 175 107 7 83 251 63 230 5.32e-12 64.7
MS.gene50524.t1 AT2G29310 31.034 174 107 7 84 251 66 232 1.30e-11 63.5
MS.gene50524.t1 AT2G29370 30.660 212 135 7 44 251 38 241 2.75e-11 62.8

Find 82 sgRNAs with CRISPR-Local

Find 101 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAAGCGATGACGAAGATTC+TGG 0.310309 7.4:+14662222 MS.gene50524:CDS
ATCATGAACATAAACTTAAA+AGG 0.315108 7.4:+14662064 MS.gene50524:CDS
GCGAAGGAGTTGAAGGGAAC+GGG 0.354344 7.4:+14662244 MS.gene50524:CDS
AAAGATGTTGCTCCTGTTGT+TGG 0.383642 7.4:+14662388 MS.gene50524:CDS
ACCGGTTCCTCCCGCGGAAT+CGG 0.391420 7.4:+14661751 MS.gene50524:CDS
AGGCGATTTGAAGGCTTCTT+CGG 0.403502 7.4:-14661957 None:intergenic
ACCGATTCCGCGGGAGGAAC+CGG 0.409076 7.4:-14661752 None:intergenic
GTTTGCAATGGTAGGGTACT+TGG 0.410715 7.4:-14662017 None:intergenic
ACTGAAGAAGAGAGTCCGTT+TGG 0.431094 7.4:+14662349 MS.gene50524:CDS
CACGGCGTCAAAGGCGGCTG+TGG 0.446425 7.4:+14662201 MS.gene50524:CDS
TGATGGGAAAACGGAGGAGA+TGG 0.454882 7.4:+14662318 MS.gene50524:CDS
GATGTGAACAGGCGATTTGA+AGG 0.457360 7.4:-14661966 None:intergenic
AGATTTACAACCGGCGGGAT+CGG 0.458840 7.4:-14661921 None:intergenic
CAAATCGCCTGTTCACATCC+TGG 0.462961 7.4:+14661970 MS.gene50524:CDS
TACTGCGAATTGCGTGGCAC+CGG 0.472414 7.4:+14662270 MS.gene50524:CDS
GAGAGTCCGTTTGGAAGACT+TGG 0.472908 7.4:+14662358 MS.gene50524:CDS
CGTTTGAAGCGAGGCGGAGG+AGG 0.473206 7.4:+14662118 MS.gene50524:CDS
CCCTCCACCCTTGCTTCACT+CGG 0.477095 7.4:+14661785 MS.gene50524:CDS
ATCTCCGTCGCAATCGGTCC+CGG 0.484488 7.4:-14662289 None:intergenic
GATTTACATGGGAGCTTACA+CGG 0.486007 7.4:+14662183 MS.gene50524:CDS
GATTCTGGCGAAGGAGTTGA+AGG 0.492095 7.4:+14662237 MS.gene50524:CDS
CTCTTTACCGATTCCGCGGG+AGG 0.494710 7.4:-14661758 None:intergenic
GAGTTAACCAGGATGTGAAC+AGG 0.500872 7.4:-14661977 None:intergenic
TGATGGCTCGTAAAGTGGTT+TGG 0.501317 7.4:-14661880 None:intergenic
ATCAGCATGGTTGGAGTTGG+AGG 0.501568 7.4:-14661831 None:intergenic
GGTTTGGTTGGTGTTGATCT+CGG 0.503221 7.4:-14661864 None:intergenic
GGAATCAGCATGGTTGGAGT+TGG 0.508679 7.4:-14661834 None:intergenic
CACATCCTGGTTAACTCAGC+CGG 0.511760 7.4:+14661983 MS.gene50524:CDS
GCCGAGTGAAGCAAGGGTGG+AGG 0.514593 7.4:-14661786 None:intergenic
ACGGTTGTGTTTGCAATGGT+AGG 0.522093 7.4:-14662025 None:intergenic
CACGTCAGCGCGGACGGTGA+TGG 0.524209 7.4:-14661897 None:intergenic
GGGAGCTTACACGGCGTCAA+AGG 0.527641 7.4:+14662192 MS.gene50524:CDS
GTCTTGCGCCGAGTGAAGCA+AGG 0.532327 7.4:-14661793 None:intergenic
GGCTCGTAAAGTGGTTTGGT+TGG 0.532346 7.4:-14661876 None:intergenic
GGACGCCGGCTGAGTTAACC+AGG 0.537594 7.4:-14661988 None:intergenic
GGTGTTGATCTCGGCGGCGA+CGG 0.540961 7.4:-14661855 None:intergenic
CGGTTGTGTTTGCAATGGTA+GGG 0.541717 7.4:-14662024 None:intergenic
GACGGTGATGGCTCGTAAAG+TGG 0.542189 7.4:-14661885 None:intergenic
GACCGAGTTGCAATTGTCAC+CGG 0.545725 7.4:+14661733 MS.gene50524:CDS
ACTGCGAATTGCGTGGCACC+GGG 0.546223 7.4:+14662271 MS.gene50524:CDS
ACTTCTGACATCGTCGTTGG+TGG 0.547144 7.4:+14662150 MS.gene50524:CDS
ATCGGACACGTCAGCGCGGA+CGG 0.549310 7.4:-14661903 None:intergenic
GGCAGCGTTGAAGATTTACA+TGG 0.549615 7.4:+14662171 MS.gene50524:CDS
ATTGTCACCGGTTCCTCCCG+CGG 0.553481 7.4:+14661745 MS.gene50524:CDS
GGCGACGGAATCAGCATGGT+TGG 0.553601 7.4:-14661840 None:intergenic
GTCGAAGAGAGATTTACAAC+CGG 0.557787 7.4:-14661930 None:intergenic
AATCGTTTGAAGCGAGGCGG+AGG 0.558244 7.4:+14662115 MS.gene50524:CDS
GATACGATCGAAGCTTTCAA+CGG 0.559331 7.4:-14662044 None:intergenic
CGATTTGAAGGCTTCTTCGG+CGG 0.570868 7.4:-14661954 None:intergenic
CCGAGTGAAGCAAGGGTGGA+GGG 0.571197 7.4:-14661785 None:intergenic
GTTTCACCAAGTCTTCCAAA+CGG 0.571998 7.4:-14662364 None:intergenic
TGCGCCGAGTGAAGCAAGGG+TGG 0.572402 7.4:-14661789 None:intergenic
GGCGAAGGAGTTGAAGGGAA+CGG 0.574740 7.4:+14662243 MS.gene50524:CDS
GATCTCTTTACCGATTCCGC+GGG 0.582675 7.4:-14661761 None:intergenic
GTACTTGGCGTCGAGGACGC+CGG 0.586113 7.4:-14662002 None:intergenic
AGCTTACACGGCGTCAAAGG+CGG 0.593385 7.4:+14662195 MS.gene50524:CDS
GTTTGAAGCGAGGCGGAGGA+GGG 0.595125 7.4:+14662119 MS.gene50524:CDS
AAGAGAGATTTACAACCGGC+GGG 0.596132 7.4:-14661926 None:intergenic
CGAAGGAGTTGAAGGGAACG+GGG 0.600148 7.4:+14662245 MS.gene50524:CDS
TCTTGCGCCGAGTGAAGCAA+GGG 0.603433 7.4:-14661792 None:intergenic
GATGACGAAGATTCTGGCGA+AGG 0.603756 7.4:+14662228 MS.gene50524:CDS
TTCAACGGTTGTGTTTGCAA+TGG 0.605622 7.4:-14662029 None:intergenic
CATACTTCTGACATCGTCGT+TGG 0.607949 7.4:+14662147 MS.gene50524:CDS
ATTAACCCATTCAGAAGCAT+CGG 0.608760 7.4:-14662423 None:intergenic
CGATCTCTTTACCGATTCCG+CGG 0.612444 7.4:-14661762 None:intergenic
TGGTAGGGTACTTGGCGTCG+AGG 0.626144 7.4:-14662009 None:intergenic
GGGGATTACTGCGAATTGCG+TGG 0.628146 7.4:+14662264 MS.gene50524:CDS
GCATCGAATCGTTTGAAGCG+AGG 0.634296 7.4:+14662109 MS.gene50524:CDS
ATTGCAACTCGGTCTTTAAG+CGG 0.637282 7.4:-14661724 None:intergenic
CGGCGGCGACGGAATCAGCA+TGG 0.639400 7.4:-14661844 None:intergenic
AGCGGTAGCGAAGCCATGTG+TGG 0.640562 7.4:-14661706 None:intergenic
AACCGGTGACAATTGCAACT+CGG 0.641340 7.4:-14661735 None:intergenic
GCTGACGTGTCCGATCCCGC+CGG 0.644503 7.4:+14661911 MS.gene50524:CDS
AGGAGCGTTTCTCTGCGCGA+AGG 0.650712 7.4:+14662084 MS.gene50524:CDS
GGCACCGGGACCGATTGCGA+CGG 0.679608 7.4:+14662285 MS.gene50524:CDS
GCAGCGTTGAAGATTTACAT+GGG 0.682047 7.4:+14662172 MS.gene50524:CDS
GAAGAGAGATTTACAACCGG+CGG 0.684898 7.4:-14661927 None:intergenic
TCGAATCGTTTGAAGCGAGG+CGG 0.701338 7.4:+14662112 MS.gene50524:CDS
ATTCTGGCGAAGGAGTTGAA+GGG 0.705622 7.4:+14662238 MS.gene50524:CDS
TATCAGTTAAGAACCACACA+TGG 0.725830 7.4:+14661693 MS.gene50524:CDS
CGGGATCGGACACGTCAGCG+CGG 0.767055 7.4:-14661907 None:intergenic
TTGGTTGGTGTTGATCTCGG+CGG 0.767522 7.4:-14661861 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTGATAAATTTATAAACTA+AGG + chr7.4:14661363-14661382 MS.gene50524:intron 15.0%
!! TATTGAATAATTAATGCATT+TGG - chr7.4:14661553-14661572 None:intergenic 15.0%
!! ATCATGAACATAAACTTAAA+AGG + chr7.4:14662064-14662083 MS.gene50524:CDS 20.0%
!! GTTTGACTTATAAATGTGAT+CGG - chr7.4:14661482-14661501 None:intergenic 25.0%
CACGAAAATCACAAACTTTA+AGG + chr7.4:14661425-14661444 MS.gene50524:intron 30.0%
CTAGTGTATTGAGTCTATAT+TGG + chr7.4:14661526-14661545 MS.gene50524:intron 30.0%
CTTTATAGGTCTAATGTATC+CGG - chr7.4:14661451-14661470 None:intergenic 30.0%
TTCTCTGTATTTAGTACTTG+TGG - chr7.4:14661667-14661686 None:intergenic 30.0%
! GTATTTAGTACTTGTGGTTT+TGG - chr7.4:14661661-14661680 None:intergenic 30.0%
!! AAAATCACAAACTTTAAGGC+CGG + chr7.4:14661429-14661448 MS.gene50524:intron 30.0%
!!! GATGTTTTTTGATGGGAAAA+CGG + chr7.4:14662309-14662328 MS.gene50524:CDS 30.0%
GTGCTTGTTCAGTAAGTTAA+CGG + chr7.4:14661315-14661334 MS.gene50524:intron 35.0%
TAGCCAAAAAAACCAACAAC+AGG - chr7.4:14662403-14662422 None:intergenic 35.0%
TATCAGTTAAGAACCACACA+TGG + chr7.4:14661693-14661712 MS.gene50524:CDS 35.0%
!!! TTAGTACTTGTGGTTTTGGT+TGG - chr7.4:14661657-14661676 None:intergenic 35.0%
AAAAACATCTCCGTCGCAAT+CGG - chr7.4:14662298-14662317 None:intergenic 40.0%
AAAGATGTTGCTCCTGTTGT+TGG + chr7.4:14662388-14662407 MS.gene50524:CDS 40.0%
ATTGCAACTCGGTCTTTAAG+CGG - chr7.4:14661727-14661746 None:intergenic 40.0%
GATACGATCGAAGCTTTCAA+CGG - chr7.4:14662047-14662066 None:intergenic 40.0%
GATTTACATGGGAGCTTACA+CGG + chr7.4:14662183-14662202 MS.gene50524:CDS 40.0%
GTCGAAGAGAGATTTACAAC+CGG - chr7.4:14661933-14661952 None:intergenic 40.0%
GTTTCACCAAGTCTTCCAAA+CGG - chr7.4:14662367-14662386 None:intergenic 40.0%
TTCAACGGTTGTGTTTGCAA+TGG - chr7.4:14662032-14662051 None:intergenic 40.0%
! GCAGCGTTGAAGATTTACAT+GGG + chr7.4:14662172-14662191 MS.gene50524:CDS 40.0%
!! GATCGGAGAAAGCACTTTAT+AGG - chr7.4:14661465-14661484 None:intergenic 40.0%
!!! CGACGGAGATGTTTTTTGAT+GGG + chr7.4:14662302-14662321 MS.gene50524:CDS 40.0%
!!! GCTCCTGTTGTTGGTTTTTT+TGG + chr7.4:14662397-14662416 MS.gene50524:CDS 40.0%
!!! GTTTTTTGATGGGAAAACGG+AGG + chr7.4:14662312-14662331 MS.gene50524:CDS 40.0%
AACCGGTGACAATTGCAACT+CGG - chr7.4:14661738-14661757 None:intergenic 45.0%
AAGAGAGATTTACAACCGGC+GGG - chr7.4:14661929-14661948 None:intergenic 45.0%
ACGGTTGTGTTTGCAATGGT+AGG - chr7.4:14662028-14662047 None:intergenic 45.0%
ACTGAAGAAGAGAGTCCGTT+TGG + chr7.4:14662349-14662368 MS.gene50524:CDS 45.0%
AGGCGATTTGAAGGCTTCTT+CGG - chr7.4:14661960-14661979 None:intergenic 45.0%
ATTCTGGCGAAGGAGTTGAA+GGG + chr7.4:14662238-14662257 MS.gene50524:CDS 45.0%
CATACTTCTGACATCGTCGT+TGG + chr7.4:14662147-14662166 MS.gene50524:CDS 45.0%
CGGTTGTGTTTGCAATGGTA+GGG - chr7.4:14662027-14662046 None:intergenic 45.0%
GAAGAGAGATTTACAACCGG+CGG - chr7.4:14661930-14661949 None:intergenic 45.0%
GAGTTAACCAGGATGTGAAC+AGG - chr7.4:14661980-14661999 None:intergenic 45.0%
GATGTGAACAGGCGATTTGA+AGG - chr7.4:14661969-14661988 None:intergenic 45.0%
TGATGGCTCGTAAAGTGGTT+TGG - chr7.4:14661883-14661902 None:intergenic 45.0%
! GGCAGCGTTGAAGATTTACA+TGG + chr7.4:14662171-14662190 MS.gene50524:CDS 45.0%
! GTTTGCAATGGTAGGGTACT+TGG - chr7.4:14662020-14662039 None:intergenic 45.0%
!! GGTTTGGTTGGTGTTGATCT+CGG - chr7.4:14661867-14661886 None:intergenic 45.0%
!!! GCGACGGAGATGTTTTTTGA+TGG + chr7.4:14662301-14662320 MS.gene50524:CDS 45.0%
!!! AAAAATTTAGATTAAATTTT+AGG - chr7.4:14661603-14661622 None:intergenic 5.0%
ACTTCTGACATCGTCGTTGG+TGG + chr7.4:14662150-14662169 MS.gene50524:CDS 50.0%
AGATTTACAACCGGCGGGAT+CGG - chr7.4:14661924-14661943 None:intergenic 50.0%
ATCAGCATGGTTGGAGTTGG+AGG - chr7.4:14661834-14661853 None:intergenic 50.0%
CAAATCGCCTGTTCACATCC+TGG + chr7.4:14661970-14661989 MS.gene50524:CDS 50.0%
CACATCCTGGTTAACTCAGC+CGG + chr7.4:14661983-14662002 MS.gene50524:CDS 50.0%
CGATTTGAAGGCTTCTTCGG+CGG - chr7.4:14661957-14661976 None:intergenic 50.0%
GACCGAGTTGCAATTGTCAC+CGG + chr7.4:14661733-14661752 MS.gene50524:CDS 50.0%
GAGAGTCCGTTTGGAAGACT+TGG + chr7.4:14662358-14662377 MS.gene50524:CDS 50.0%
GATGACGAAGATTCTGGCGA+AGG + chr7.4:14662228-14662247 MS.gene50524:CDS 50.0%
GATTCTGGCGAAGGAGTTGA+AGG + chr7.4:14662237-14662256 MS.gene50524:CDS 50.0%
GGAAGCGATGACGAAGATTC+TGG + chr7.4:14662222-14662241 MS.gene50524:CDS 50.0%
GGAATCAGCATGGTTGGAGT+TGG - chr7.4:14661837-14661856 None:intergenic 50.0%
TGATGGGAAAACGGAGGAGA+TGG + chr7.4:14662318-14662337 MS.gene50524:CDS 50.0%
! GCATCGAATCGTTTGAAGCG+AGG + chr7.4:14662109-14662128 MS.gene50524:CDS 50.0%
! TCGAATCGTTTGAAGCGAGG+CGG + chr7.4:14662112-14662131 MS.gene50524:CDS 50.0%
!! CGATCTCTTTACCGATTCCG+CGG - chr7.4:14661765-14661784 None:intergenic 50.0%
!! GATCTCTTTACCGATTCCGC+GGG - chr7.4:14661764-14661783 None:intergenic 50.0%
!! GGCTCGTAAAGTGGTTTGGT+TGG - chr7.4:14661879-14661898 None:intergenic 50.0%
!! TTGGTTGGTGTTGATCTCGG+CGG - chr7.4:14661864-14661883 None:intergenic 50.0%
AGCTTACACGGCGTCAAAGG+CGG + chr7.4:14662195-14662214 MS.gene50524:CDS 55.0%
CGAAGGAGTTGAAGGGAACG+GGG + chr7.4:14662245-14662264 MS.gene50524:CDS 55.0%
GCGAAGGAGTTGAAGGGAAC+GGG + chr7.4:14662244-14662263 MS.gene50524:CDS 55.0%
GGCGAAGGAGTTGAAGGGAA+CGG + chr7.4:14662243-14662262 MS.gene50524:CDS 55.0%
GGGGATTACTGCGAATTGCG+TGG + chr7.4:14662264-14662283 MS.gene50524:CDS 55.0%
TACTGCGAATTGCGTGGCAC+CGG + chr7.4:14662270-14662289 MS.gene50524:CDS 55.0%
TCTTGCGCCGAGTGAAGCAA+GGG - chr7.4:14661795-14661814 None:intergenic 55.0%
! AATCGTTTGAAGCGAGGCGG+AGG + chr7.4:14662115-14662134 MS.gene50524:CDS 55.0%
! GACGGTGATGGCTCGTAAAG+TGG - chr7.4:14661888-14661907 None:intergenic 55.0%
ACTGCGAATTGCGTGGCACC+GGG + chr7.4:14662271-14662290 MS.gene50524:CDS 60.0%
AGCGGTAGCGAAGCCATGTG+TGG - chr7.4:14661709-14661728 None:intergenic 60.0%
ATCTCCGTCGCAATCGGTCC+CGG - chr7.4:14662292-14662311 None:intergenic 60.0%
CCCTCCACCCTTGCTTCACT+CGG + chr7.4:14661785-14661804 MS.gene50524:CDS 60.0%
CCGAGTGAAGCAAGGGTGGA+GGG - chr7.4:14661788-14661807 None:intergenic 60.0%
GGCGACGGAATCAGCATGGT+TGG - chr7.4:14661843-14661862 None:intergenic 60.0%
GGGAGCTTACACGGCGTCAA+AGG + chr7.4:14662192-14662211 MS.gene50524:CDS 60.0%
GTCTTGCGCCGAGTGAAGCA+AGG - chr7.4:14661796-14661815 None:intergenic 60.0%
! GTTTGAAGCGAGGCGGAGGA+GGG + chr7.4:14662119-14662138 MS.gene50524:CDS 60.0%
! TGGTAGGGTACTTGGCGTCG+AGG - chr7.4:14662012-14662031 None:intergenic 60.0%
!! AGGAGCGTTTCTCTGCGCGA+AGG + chr7.4:14662084-14662103 MS.gene50524:CDS 60.0%
!! ATTGTCACCGGTTCCTCCCG+CGG + chr7.4:14661745-14661764 MS.gene50524:CDS 60.0%
!! CTCTTTACCGATTCCGCGGG+AGG - chr7.4:14661761-14661780 None:intergenic 60.0%
ATCGGACACGTCAGCGCGGA+CGG - chr7.4:14661906-14661925 None:intergenic 65.0%
GCCGAGTGAAGCAAGGGTGG+AGG - chr7.4:14661789-14661808 None:intergenic 65.0%
TGCGCCGAGTGAAGCAAGGG+TGG - chr7.4:14661792-14661811 None:intergenic 65.0%
! ACCGATTCCGCGGGAGGAAC+CGG - chr7.4:14661755-14661774 None:intergenic 65.0%
! ACCGGTTCCTCCCGCGGAAT+CGG + chr7.4:14661751-14661770 MS.gene50524:CDS 65.0%
! CGTTTGAAGCGAGGCGGAGG+AGG + chr7.4:14662118-14662137 MS.gene50524:CDS 65.0%
! GGACGCCGGCTGAGTTAACC+AGG - chr7.4:14661991-14662010 None:intergenic 65.0%
! GTACTTGGCGTCGAGGACGC+CGG - chr7.4:14662005-14662024 None:intergenic 65.0%
!! GGTGTTGATCTCGGCGGCGA+CGG - chr7.4:14661858-14661877 None:intergenic 65.0%
CACGGCGTCAAAGGCGGCTG+TGG + chr7.4:14662201-14662220 MS.gene50524:CDS 70.0%
CACGTCAGCGCGGACGGTGA+TGG - chr7.4:14661900-14661919 None:intergenic 70.0%
CGGCGGCGACGGAATCAGCA+TGG - chr7.4:14661847-14661866 None:intergenic 70.0%
CGGGATCGGACACGTCAGCG+CGG - chr7.4:14661910-14661929 None:intergenic 70.0%
GCTGACGTGTCCGATCCCGC+CGG + chr7.4:14661911-14661930 MS.gene50524:CDS 70.0%
! GGCACCGGGACCGATTGCGA+CGG + chr7.4:14662285-14662304 MS.gene50524:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 14661308 14662435 14661308 ID=MS.gene50524
chr7.4 mRNA 14661308 14662435 14661308 ID=MS.gene50524.t1;Parent=MS.gene50524
chr7.4 exon 14661308 14661325 14661308 ID=MS.gene50524.t1.exon1;Parent=MS.gene50524.t1
chr7.4 CDS 14661308 14661325 14661308 ID=cds.MS.gene50524.t1;Parent=MS.gene50524.t1
chr7.4 exon 14661683 14662435 14661683 ID=MS.gene50524.t1.exon2;Parent=MS.gene50524.t1
chr7.4 CDS 14661683 14662435 14661683 ID=cds.MS.gene50524.t1;Parent=MS.gene50524.t1
Gene Sequence

>MS.gene50524

ATGTTTCGTGCTTGTTCAGTAAGTTAACGGTCACATCATCGTCTTTTAAACAGATACTGATAAATTTATAAACTAAGGACTTACTAATTAAAATGTATAAAACTTAAATGACTAACTCACGAAAATCACAAACTTTAAGGCCGGATACATTAGACCTATAAAGTGCTTTCTCCGATCACATTTATAAGTCAAACATAACTTTTAGATTCATTGAATAACTAGTGTATTGAGTCTATATTGGACCAAATGCATTAATTATTCAATATTCTAAATATATTAATTATTTAATTAACCTAAAATTTAATCTAAATTTTTTTTTTCTCTCTTATAAATGTGTTACACTAAACCAACCAAAACCACAAGTACTAAATACAGAGAAAAGCGATATCAGTTAAGAACCACACATGGCTTCGCTACCGCTTAAAGACCGAGTTGCAATTGTCACCGGTTCCTCCCGCGGAATCGGTAAAGAGATCGCCCTCCACCCTTGCTTCACTCGGCGCAAGACTCGTCATCAACTACACCTCCAACTCCAACCATGCTGATTCCGTCGCCGCCGAGATCAACACCAACCAAACCACTTTACGAGCCATCACCGTCCGCGCTGACGTGTCCGATCCCGCCGGTTGTAAATCTCTCTTCGACTCCGCCGAAGAAGCCTTCAAATCGCCTGTTCACATCCTGGTTAACTCAGCCGGCGTCCTCGACGCCAAGTACCCTACCATTGCAAACACAACCGTTGAAAGCTTCGATCGTATCATGAACATAAACTTAAAAGGAGCGTTTCTCTGCGCGAAGGAAGCATCGAATCGTTTGAAGCGAGGCGGAGGAGGGAGAATCATACTTCTGACATCGTCGTTGGTGGCAGCGTTGAAGATTTACATGGGAGCTTACACGGCGTCAAAGGCGGCTGTGGAAGCGATGACGAAGATTCTGGCGAAGGAGTTGAAGGGAACGGGGATTACTGCGAATTGCGTGGCACCGGGACCGATTGCGACGGAGATGTTTTTTGATGGGAAAACGGAGGAGATGGTGAAGAAAACTGAAGAAGAGAGTCCGTTTGGAAGACTTGGTGAAACTAAAGATGTTGCTCCTGTTGTTGGTTTTTTTGGCTACCGATGCTTCTGA
Protein sequence

>MS.gene50524.t1

MFRACSRKAISVKNHTWLRYRLKTELQLSPVPPAESVKRSPSTLASLGARLVINYTSNSNHADSVAAEINTNQTTLRAITVRADVSDPAGCKSLFDSAEEAFKSPVHILVNSAGVLDAKYPTIANTTVESFDRIMNINLKGAFLCAKEASNRLKRGGGGRIILLTSSLVAALKIYMGAYTASKAAVEAMTKILAKELKGTGITANCVAPGPIATEMFFDGKTEEMVKKTEEESPFGRLGETKDVAPVVGFFGYRCF