AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene018066

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018066.t1 MTR_7g094510 96.471 255 9 0 1 255 1 255 0.0 499
MS.gene018066.t1 MTR_7g094520 83.004 253 43 0 3 255 8 260 2.57e-154 430
MS.gene018066.t1 MTR_1g068955 69.600 250 75 1 4 252 12 261 1.96e-120 345
MS.gene018066.t1 MTR_3g085740 35.628 247 152 5 10 255 79 319 6.58e-37 132
MS.gene018066.t1 MTR_3g068070 33.333 258 150 10 6 254 15 259 4.05e-31 116
MS.gene018066.t1 MTR_3g068085 32.432 259 151 10 6 254 15 259 3.99e-30 114
MS.gene018066.t1 MTR_4g064887 34.118 255 150 9 6 253 15 258 2.78e-29 111
MS.gene018066.t1 MTR_3g068065 33.721 258 149 10 6 254 17 261 5.99e-29 110
MS.gene018066.t1 MTR_3g068175 32.819 259 148 11 6 253 17 260 7.32e-28 107
MS.gene018066.t1 MTR_6g023610 31.008 258 166 5 4 255 11 262 4.77e-27 105
MS.gene018066.t1 MTR_7g063260 31.660 259 157 7 6 254 16 264 6.54e-27 105
MS.gene018066.t1 MTR_7g063320 31.008 258 162 7 6 255 15 264 1.08e-26 104
MS.gene018066.t1 MTR_6g023590 30.798 263 160 7 3 254 10 261 1.57e-26 104
MS.gene018066.t1 MTR_7g071680 32.967 273 149 10 6 253 29 292 1.86e-26 104
MS.gene018066.t1 MTR_7g063270 31.008 258 159 7 6 254 16 263 2.49e-26 103
MS.gene018066.t1 MTR_6g023910 31.154 260 167 6 2 255 9 262 6.67e-26 102
MS.gene018066.t1 MTR_6g023600 30.116 259 167 6 3 254 10 261 9.76e-26 102
MS.gene018066.t1 MTR_3g068175 32.319 263 148 12 6 253 17 264 1.11e-25 102
MS.gene018066.t1 MTR_6g081270 72.308 65 18 0 28 92 29 93 1.98e-25 96.7
MS.gene018066.t1 MTR_7g063360 31.250 256 162 6 6 254 16 264 2.04e-25 101
MS.gene018066.t1 MTR_7g063390 30.078 256 165 6 6 254 16 264 2.54e-25 100
MS.gene018066.t1 MTR_6g023600 30.116 259 161 6 3 254 10 255 2.62e-25 100
MS.gene018066.t1 MTR_3g068155 30.315 254 161 9 6 253 19 262 3.60e-25 100
MS.gene018066.t1 MTR_4g064883 31.200 250 164 6 6 253 14 257 5.13e-25 100
MS.gene018066.t1 MTR_1196s0010 32.411 253 152 7 8 255 276 514 2.13e-24 101
MS.gene018066.t1 MTR_6g023990 30.769 260 166 7 2 254 10 262 1.73e-23 96.3
MS.gene018066.t1 MTR_7g107670 29.771 262 160 9 6 254 33 283 3.75e-23 95.9
MS.gene018066.t1 MTR_7g063330 29.249 253 170 4 6 254 15 262 1.74e-22 93.6
MS.gene018066.t1 MTR_3g020670 31.439 264 156 8 6 254 16 269 3.42e-22 92.8
MS.gene018066.t1 MTR_4g131740 28.125 256 174 5 6 255 40 291 4.36e-22 92.8
MS.gene018066.t1 MTR_6g023950 29.771 262 164 7 3 254 10 261 4.40e-22 92.4
MS.gene018066.t1 MTR_7g105580 29.740 269 141 9 1 254 1 236 2.30e-21 90.1
MS.gene018066.t1 MTR_4g132850 30.522 249 164 7 6 253 7 247 7.33e-21 89.0
MS.gene018066.t1 MTR_4g078630 28.846 260 164 5 6 253 19 269 1.69e-20 88.6
MS.gene018066.t1 MTR_7g083870 29.502 261 163 8 6 254 35 286 3.55e-20 87.8
MS.gene018066.t1 MTR_4g058810 30.000 260 161 10 6 253 11 261 5.07e-20 87.0
MS.gene018066.t1 MTR_7g105590 30.348 201 132 3 1 199 1 195 1.53e-19 84.0
MS.gene018066.t1 MTR_8g442750 31.343 268 147 9 6 253 14 264 1.77e-19 85.9
MS.gene018066.t1 MTR_7g113650 27.138 269 159 9 6 255 40 290 2.72e-19 85.1
MS.gene018066.t1 MTR_4g058840 29.615 260 162 10 6 253 11 261 6.97e-19 84.0
MS.gene018066.t1 MTR_4g058820 29.615 260 162 10 6 253 11 261 6.97e-19 84.0
MS.gene018066.t1 MTR_1g082760 29.213 267 156 9 6 255 40 290 3.16e-18 82.4
MS.gene018066.t1 MTR_7g105460 29.845 258 161 9 6 254 13 259 3.42e-18 82.0
MS.gene018066.t1 MTR_1g051165 29.434 265 161 9 6 253 14 269 4.80e-18 81.6
MS.gene018066.t1 MTR_4g064887 34.328 201 115 8 6 200 15 204 1.76e-17 79.0
MS.gene018066.t1 MTR_4g052320 27.953 254 169 7 6 254 8 252 2.21e-17 79.7
MS.gene018066.t1 MTR_4g052350 27.612 268 167 8 1 253 1 256 3.64e-17 79.0
MS.gene018066.t1 MTR_4g052340 26.966 267 168 6 1 252 1 255 8.72e-17 78.2
MS.gene018066.t1 MTR_4g052300 29.231 260 155 9 6 253 8 250 1.12e-16 77.8
MS.gene018066.t1 MTR_7g063270 37.374 99 58 1 160 254 116 214 1.03e-15 73.9
MS.gene018066.t1 MTR_4g064883 31.122 196 128 5 6 200 14 203 2.11e-15 73.2
MS.gene018066.t1 MTR_4g066050 29.208 202 126 7 8 201 26 218 8.18e-15 72.4
MS.gene018066.t1 MTR_4g134660 29.592 196 131 5 8 201 8 198 1.99e-14 70.9
MS.gene018066.t1 MTR_3g113870 28.780 205 134 7 14 216 29 223 1.73e-13 68.2
MS.gene018066.t1 MTR_7g080410 27.320 194 138 3 6 198 38 229 3.29e-13 68.6
MS.gene018066.t1 MTR_7g080410 27.320 194 138 3 6 198 38 229 3.75e-13 68.2
MS.gene018066.t1 MTR_7g110130 26.996 263 173 7 1 254 1 253 1.21e-12 66.2
MS.gene018066.t1 MTR_7g110140 27.027 259 177 7 1 254 1 252 3.56e-12 65.1
MS.gene018066.t1 MTR_7g105570 31.579 171 105 5 92 254 50 216 3.85e-12 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene018066.t1 AT3G03980 70.656 259 69 1 4 255 12 270 7.03e-130 368
MS.gene018066.t1 AT5G18210 68.775 253 76 1 6 255 8 260 8.19e-126 358
MS.gene018066.t1 AT5G18210 70.339 236 67 1 6 238 8 243 7.93e-117 335
MS.gene018066.t1 AT3G04000 62.016 258 90 1 4 253 12 269 1.16e-115 332
MS.gene018066.t1 AT4G13180 58.268 254 106 0 2 255 9 262 1.76e-110 319
MS.gene018066.t1 AT2G29290 33.200 250 159 6 6 253 7 250 9.71e-32 117
MS.gene018066.t1 AT5G06060 32.411 253 159 8 6 254 9 253 2.04e-31 117
MS.gene018066.t1 AT1G24360 32.653 245 158 5 10 253 78 316 4.89e-31 117
MS.gene018066.t1 AT2G29260 31.837 245 159 6 11 253 73 311 2.05e-28 110
MS.gene018066.t1 AT2G29360 32.794 247 156 6 11 254 21 260 6.63e-28 108
MS.gene018066.t1 AT2G29150 32.283 254 155 7 6 253 16 258 5.61e-27 105
MS.gene018066.t1 AT2G29290 35.979 189 116 5 67 253 48 233 7.46e-27 104
MS.gene018066.t1 AT2G29350 32.389 247 154 7 11 253 20 257 1.42e-26 104
MS.gene018066.t1 AT3G51680 34.962 266 151 10 6 253 32 293 2.20e-25 102
MS.gene018066.t1 AT1G07440 31.102 254 158 8 6 253 12 254 8.18e-25 99.8
MS.gene018066.t1 AT2G30670 32.143 252 159 7 6 253 7 250 1.23e-24 99.4
MS.gene018066.t1 AT3G55310 30.315 254 168 7 6 253 17 267 2.13e-24 99.0
MS.gene018066.t1 AT2G29370 32.411 253 159 7 6 254 16 260 6.55e-24 97.4
MS.gene018066.t1 AT3G46170 29.528 254 170 7 6 253 26 276 1.54e-23 96.7
MS.gene018066.t1 AT1G54870 30.268 261 161 8 6 255 84 334 2.36e-23 97.1
MS.gene018066.t1 AT1G54870 30.268 261 161 8 6 255 82 332 2.47e-23 97.1
MS.gene018066.t1 AT3G55290 29.134 254 171 7 6 253 17 267 4.03e-23 95.5
MS.gene018066.t1 AT3G55290 29.134 254 171 7 6 253 18 268 4.31e-23 95.5
MS.gene018066.t1 AT2G29310 30.588 255 161 8 6 254 7 251 7.87e-23 94.4
MS.gene018066.t1 AT1G52340 28.682 258 168 4 9 254 21 274 1.17e-22 94.4
MS.gene018066.t1 AT3G26760 27.612 268 169 9 2 254 32 289 2.21e-22 94.0
MS.gene018066.t1 AT3G05260 29.297 256 169 6 6 255 37 286 2.26e-22 93.6
MS.gene018066.t1 AT2G29350 33.333 198 122 6 60 253 28 219 2.45e-22 92.4
MS.gene018066.t1 AT1G63380 28.627 255 172 7 6 253 15 266 2.92e-22 93.2
MS.gene018066.t1 AT1G63380 28.627 255 172 7 6 253 17 268 3.11e-22 93.2
MS.gene018066.t1 AT1G63380 28.627 255 172 7 6 253 22 273 3.55e-22 93.2
MS.gene018066.t1 AT1G63380 28.627 255 172 7 6 253 19 270 3.56e-22 93.2
MS.gene018066.t1 AT2G17845 29.231 260 172 8 3 253 44 300 4.25e-22 93.2
MS.gene018066.t1 AT1G62610 30.620 258 163 10 6 253 14 265 1.91e-21 90.9
MS.gene018066.t1 AT1G62610 30.620 258 163 10 6 253 13 264 2.04e-21 90.9
MS.gene018066.t1 AT1G62610 30.620 258 163 10 6 253 15 266 2.08e-21 90.9
MS.gene018066.t1 AT1G62610 30.620 258 163 10 6 253 19 270 2.09e-21 90.9
MS.gene018066.t1 AT1G07450 29.231 260 157 7 6 254 8 251 3.43e-21 89.7
MS.gene018066.t1 AT2G29320 30.709 254 161 7 6 253 13 257 4.30e-21 89.7
MS.gene018066.t1 AT2G29300 30.709 254 161 7 6 253 7 251 6.55e-21 89.4
MS.gene018066.t1 AT2G29300 31.298 262 149 10 6 253 7 251 8.63e-21 89.4
MS.gene018066.t1 AT2G47130 30.385 260 166 7 1 254 1 251 8.65e-21 89.0
MS.gene018066.t1 AT2G29340 31.373 255 157 8 6 253 7 250 1.76e-20 88.2
MS.gene018066.t1 AT2G29340 31.373 255 157 8 6 253 7 250 4.15e-20 87.8
MS.gene018066.t1 AT2G29330 30.233 258 156 9 6 253 7 250 4.41e-20 87.0
MS.gene018066.t1 AT2G47120 29.434 265 161 6 1 254 1 250 4.92e-20 86.7
MS.gene018066.t1 AT3G29250 30.038 263 164 9 1 254 1 252 2.37e-19 85.1
MS.gene018066.t1 AT3G29250 30.038 263 164 9 1 254 37 288 4.70e-19 84.7
MS.gene018066.t1 AT2G47120 29.231 260 158 6 6 254 7 251 1.15e-18 83.2
MS.gene018066.t1 AT2G29310 31.959 194 119 7 67 254 63 249 3.07e-18 82.0
MS.gene018066.t1 AT3G29260 29.278 263 165 8 1 254 1 251 3.12e-18 82.0
MS.gene018066.t1 AT3G29250 29.845 258 161 9 6 254 44 290 7.76e-18 81.3
MS.gene018066.t1 AT4G05530 28.000 250 169 7 6 253 9 249 1.37e-16 77.4
MS.gene018066.t1 AT4G03140 26.154 260 172 5 6 254 78 328 1.46e-16 78.2
MS.gene018066.t1 AT2G29320 31.606 193 120 6 67 253 53 239 1.97e-16 76.6
MS.gene018066.t1 AT3G26770 28.185 259 167 8 6 253 41 291 9.22e-16 75.9
MS.gene018066.t1 AT3G42960 27.376 263 167 7 6 254 8 260 1.20e-15 75.1
MS.gene018066.t1 AT3G12800 29.344 259 165 7 6 253 10 261 1.78e-15 74.7
MS.gene018066.t1 AT2G47140 27.799 259 175 7 1 254 1 252 2.40e-14 71.2
MS.gene018066.t1 AT2G29310 29.592 196 131 5 6 200 7 196 4.21e-13 66.6
MS.gene018066.t1 AT2G29350 30.412 194 128 5 11 203 20 207 5.75e-13 66.6
MS.gene018066.t1 AT5G50600 29.717 212 137 8 6 212 45 249 7.66e-13 67.8
MS.gene018066.t1 AT5G50700 29.717 212 137 8 6 212 45 249 7.66e-13 67.8

Find 80 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCAAATTATTCGTGTTAA+TGG 0.232122 7.1:+13421366 MS.gene018066:CDS
GGAAGCGATGACGAAGATTC+TGG 0.310309 7.1:+13421143 MS.gene018066:CDS
ATCATGAACATAAACTTAAA+AGG 0.315108 7.1:+13420985 MS.gene018066:CDS
GCGAAGGAGTTGAAGGGAAC+GGG 0.354344 7.1:+13421165 MS.gene018066:CDS
GATGCTTCTGAATGGGTTAA+TGG 0.360805 7.1:+13421345 MS.gene018066:CDS
AAAGATGTTGCTCCTGTTGT+TGG 0.383642 7.1:+13421309 MS.gene018066:CDS
ACCGGTTCCTCCCGCGGAAT+CGG 0.391420 7.1:+13420673 MS.gene018066:CDS
AGGCGATTTGAAGGCTTCTT+CGG 0.403502 7.1:-13420878 None:intergenic
ACCGATTCCGCGGGAGGAAC+CGG 0.409076 7.1:-13420674 None:intergenic
GTTTGCAATGGTAGGGTACT+TGG 0.410715 7.1:-13420938 None:intergenic
GGCTACCGATGCTTCTGAAT+GGG 0.418333 7.1:+13421338 MS.gene018066:CDS
TGGCTACCGATGCTTCTGAA+TGG 0.420918 7.1:+13421337 MS.gene018066:CDS
ACTGAAGAAGAGAGTCCGTT+TGG 0.431094 7.1:+13421270 MS.gene018066:CDS
CACGGCGTCAAAGGCGGCTG+TGG 0.446425 7.1:+13421122 MS.gene018066:CDS
TGATGGGAAAACGGAGGAGA+TGG 0.454882 7.1:+13421239 MS.gene018066:CDS
GATGTGAACAGGCGATTTGA+AGG 0.457360 7.1:-13420887 None:intergenic
CAAATCGCCTGTTCACATCC+TGG 0.462961 7.1:+13420891 MS.gene018066:CDS
TACTGCGAATTGCGTGGCAC+CGG 0.472414 7.1:+13421191 MS.gene018066:CDS
GAGAGTCCGTTTGGAAGACT+TGG 0.472908 7.1:+13421279 MS.gene018066:CDS
CGTTTGAAGCGAGGCGGAGG+AGG 0.473206 7.1:+13421039 MS.gene018066:CDS
CGCCGAGTGAAGCAAGGTGG+AGG 0.477214 7.1:-13420708 None:intergenic
ATCTCCGTCGCAATCGGTCC+CGG 0.484488 7.1:-13421210 None:intergenic
GATTTACATGGGAGCTTACA+CGG 0.486007 7.1:+13421104 MS.gene018066:CDS
GATTCTGGCGAAGGAGTTGA+AGG 0.492095 7.1:+13421158 MS.gene018066:CDS
CTCTTTACCGATTCCGCGGG+AGG 0.494710 7.1:-13420680 None:intergenic
GAGTTAACCAGGATGTGAAC+AGG 0.500872 7.1:-13420898 None:intergenic
TGATGGCTCGTAAAGTGGTT+TGG 0.501317 7.1:-13420801 None:intergenic
ATCAGCATGGTTGGAGTTGG+AGG 0.501568 7.1:-13420752 None:intergenic
GGTTTGGTTGGTGTTGATCT+CGG 0.503221 7.1:-13420785 None:intergenic
GGAATCAGCATGGTTGGAGT+TGG 0.508679 7.1:-13420755 None:intergenic
CACATCCTGGTTAACTCAGC+CGG 0.511760 7.1:+13420904 MS.gene018066:CDS
ACGGTTGTGTTTGCAATGGT+AGG 0.522093 7.1:-13420946 None:intergenic
GCCCTCCACCTTGCTTCACT+CGG 0.524186 7.1:+13420706 MS.gene018066:CDS
CACGTCAGCGCGGACGGTGA+TGG 0.524209 7.1:-13420818 None:intergenic
GGGAGCTTACACGGCGTCAA+AGG 0.527641 7.1:+13421113 MS.gene018066:CDS
GGCTCGTAAAGTGGTTTGGT+TGG 0.532346 7.1:-13420797 None:intergenic
GGACGCCGGCTGAGTTAACC+AGG 0.537594 7.1:-13420909 None:intergenic
GGTGTTGATCTCGGCGGCGA+CGG 0.540961 7.1:-13420776 None:intergenic
CGGTTGTGTTTGCAATGGTA+GGG 0.541717 7.1:-13420945 None:intergenic
GACGGTGATGGCTCGTAAAG+TGG 0.542189 7.1:-13420806 None:intergenic
GACCGAGTTGCAATTGTCAC+CGG 0.545725 7.1:+13420655 MS.gene018066:CDS
ACTGCGAATTGCGTGGCACC+GGG 0.546223 7.1:+13421192 MS.gene018066:CDS
ACTTCTGACATCGTCGTTGG+TGG 0.547144 7.1:+13421071 MS.gene018066:CDS
ATCGGACACGTCAGCGCGGA+CGG 0.549310 7.1:-13420824 None:intergenic
GGCAGCGTTGAAGATTTACA+TGG 0.549615 7.1:+13421092 MS.gene018066:CDS
ATTGTCACCGGTTCCTCCCG+CGG 0.553481 7.1:+13420667 MS.gene018066:CDS
GGCGACGGAATCAGCATGGT+TGG 0.553601 7.1:-13420761 None:intergenic
AATCGTTTGAAGCGAGGCGG+AGG 0.558244 7.1:+13421036 MS.gene018066:CDS
GATACGATCGAAGCTTTCAA+CGG 0.559331 7.1:-13420965 None:intergenic
CGATTTGAAGGCTTCTTCGG+CGG 0.570868 7.1:-13420875 None:intergenic
GTTTCACCAAGTCTTCCAAA+CGG 0.571998 7.1:-13421285 None:intergenic
GGCGAAGGAGTTGAAGGGAA+CGG 0.574740 7.1:+13421164 MS.gene018066:CDS
CAAATTATTCGTGTTAATGG+TGG 0.579717 7.1:+13421369 MS.gene018066:CDS
GATCTCTTTACCGATTCCGC+GGG 0.582675 7.1:-13420683 None:intergenic
GTACTTGGCGTCGAGGACGC+CGG 0.586113 7.1:-13420923 None:intergenic
AGCTTACACGGCGTCAAAGG+CGG 0.593385 7.1:+13421116 MS.gene018066:CDS
GTCTTGCGCCGAGTGAAGCA+AGG 0.594132 7.1:-13420714 None:intergenic
GTTTGAAGCGAGGCGGAGGA+GGG 0.595125 7.1:+13421040 MS.gene018066:CDS
CGAAGGAGTTGAAGGGAACG+GGG 0.600148 7.1:+13421166 MS.gene018066:CDS
GATGACGAAGATTCTGGCGA+AGG 0.603756 7.1:+13421149 MS.gene018066:CDS
TTCAACGGTTGTGTTTGCAA+TGG 0.605622 7.1:-13420950 None:intergenic
CATACTTCTGACATCGTCGT+TGG 0.607949 7.1:+13421068 MS.gene018066:CDS
GCCGAGTGAAGCAAGGTGGA+GGG 0.608469 7.1:-13420707 None:intergenic
ATTAACCCATTCAGAAGCAT+CGG 0.608760 7.1:-13421343 None:intergenic
CGATCTCTTTACCGATTCCG+CGG 0.612444 7.1:-13420684 None:intergenic
TGGTAGGGTACTTGGCGTCG+AGG 0.626144 7.1:-13420930 None:intergenic
GGGGATTACTGCGAATTGCG+TGG 0.628146 7.1:+13421185 MS.gene018066:CDS
GCATCGAATCGTTTGAAGCG+AGG 0.634296 7.1:+13421030 MS.gene018066:CDS
ATTGCAACTCGGTCTTTAAG+CGG 0.637282 7.1:-13420646 None:intergenic
CGGCGGCGACGGAATCAGCA+TGG 0.639400 7.1:-13420765 None:intergenic
AACCGGTGACAATTGCAACT+CGG 0.641340 7.1:-13420657 None:intergenic
GCTGACGTGTCCGATCCCGC+CGG 0.644503 7.1:+13420832 MS.gene018066:CDS
AGGAGCGTTTCTCTGCGCGA+AGG 0.650712 7.1:+13421005 MS.gene018066:CDS
TTGCGCCGAGTGAAGCAAGG+TGG 0.675152 7.1:-13420711 None:intergenic
GGCACCGGGACCGATTGCGA+CGG 0.679608 7.1:+13421206 MS.gene018066:CDS
GCAGCGTTGAAGATTTACAT+GGG 0.682047 7.1:+13421093 MS.gene018066:CDS
TCGAATCGTTTGAAGCGAGG+CGG 0.701338 7.1:+13421033 MS.gene018066:CDS
ATTCTGGCGAAGGAGTTGAA+GGG 0.705622 7.1:+13421159 MS.gene018066:CDS
CGGGATCGGACACGTCAGCG+CGG 0.767055 7.1:-13420828 None:intergenic
TTGGTTGGTGTTGATCTCGG+CGG 0.767522 7.1:-13420782 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATGAACATAAACTTAAA+AGG + chr7.1:13420985-13421004 MS.gene018066:CDS 20.0%
CAAATTATTCGTGTTAATGG+TGG + chr7.1:13421369-13421388 MS.gene018066:CDS 30.0%
GGTCAAATTATTCGTGTTAA+TGG + chr7.1:13421366-13421385 MS.gene018066:CDS 30.0%
!!! GATGTTTTTTGATGGGAAAA+CGG + chr7.1:13421230-13421249 MS.gene018066:CDS 30.0%
! ATTAACCCATTCAGAAGCAT+CGG - chr7.1:13421346-13421365 None:intergenic 35.0%
AAAAACATCTCCGTCGCAAT+CGG - chr7.1:13421219-13421238 None:intergenic 40.0%
AAAGATGTTGCTCCTGTTGT+TGG + chr7.1:13421309-13421328 MS.gene018066:CDS 40.0%
ATTGCAACTCGGTCTTTAAG+CGG - chr7.1:13420649-13420668 None:intergenic 40.0%
GATACGATCGAAGCTTTCAA+CGG - chr7.1:13420968-13420987 None:intergenic 40.0%
GATTTACATGGGAGCTTACA+CGG + chr7.1:13421104-13421123 MS.gene018066:CDS 40.0%
GTAGCCAAAAAACCAACAAC+AGG - chr7.1:13421324-13421343 None:intergenic 40.0%
GTTTCACCAAGTCTTCCAAA+CGG - chr7.1:13421288-13421307 None:intergenic 40.0%
TTCAACGGTTGTGTTTGCAA+TGG - chr7.1:13420953-13420972 None:intergenic 40.0%
! GCAGCGTTGAAGATTTACAT+GGG + chr7.1:13421093-13421112 MS.gene018066:CDS 40.0%
! GTCGAAGAGAGATTTTACAC+CGG - chr7.1:13420854-13420873 None:intergenic 40.0%
!! GATGCTTCTGAATGGGTTAA+TGG + chr7.1:13421345-13421364 MS.gene018066:CDS 40.0%
!!! CGACGGAGATGTTTTTTGAT+GGG + chr7.1:13421223-13421242 MS.gene018066:CDS 40.0%
!!! GTTTTTTGATGGGAAAACGG+AGG + chr7.1:13421233-13421252 MS.gene018066:CDS 40.0%
!!! TGCTCCTGTTGTTGGTTTTT+TGG + chr7.1:13421317-13421336 MS.gene018066:CDS 40.0%
AACCGGTGACAATTGCAACT+CGG - chr7.1:13420660-13420679 None:intergenic 45.0%
ACGGTTGTGTTTGCAATGGT+AGG - chr7.1:13420949-13420968 None:intergenic 45.0%
ACTGAAGAAGAGAGTCCGTT+TGG + chr7.1:13421270-13421289 MS.gene018066:CDS 45.0%
AGGCGATTTGAAGGCTTCTT+CGG - chr7.1:13420881-13420900 None:intergenic 45.0%
ATTCTGGCGAAGGAGTTGAA+GGG + chr7.1:13421159-13421178 MS.gene018066:CDS 45.0%
CATACTTCTGACATCGTCGT+TGG + chr7.1:13421068-13421087 MS.gene018066:CDS 45.0%
CGGTTGTGTTTGCAATGGTA+GGG - chr7.1:13420948-13420967 None:intergenic 45.0%
GAGTTAACCAGGATGTGAAC+AGG - chr7.1:13420901-13420920 None:intergenic 45.0%
GATGTGAACAGGCGATTTGA+AGG - chr7.1:13420890-13420909 None:intergenic 45.0%
TGATGGCTCGTAAAGTGGTT+TGG - chr7.1:13420804-13420823 None:intergenic 45.0%
! AAGAGAGATTTTACACCGGC+GGG - chr7.1:13420850-13420869 None:intergenic 45.0%
! GAAGAGAGATTTTACACCGG+CGG - chr7.1:13420851-13420870 None:intergenic 45.0%
! GGCAGCGTTGAAGATTTACA+TGG + chr7.1:13421092-13421111 MS.gene018066:CDS 45.0%
! GTTTGCAATGGTAGGGTACT+TGG - chr7.1:13420941-13420960 None:intergenic 45.0%
!! GGTTTGGTTGGTGTTGATCT+CGG - chr7.1:13420788-13420807 None:intergenic 45.0%
!!! GCGACGGAGATGTTTTTTGA+TGG + chr7.1:13421222-13421241 MS.gene018066:CDS 45.0%
ACTTCTGACATCGTCGTTGG+TGG + chr7.1:13421071-13421090 MS.gene018066:CDS 50.0%
ATCAGCATGGTTGGAGTTGG+AGG - chr7.1:13420755-13420774 None:intergenic 50.0%
CAAATCGCCTGTTCACATCC+TGG + chr7.1:13420891-13420910 MS.gene018066:CDS 50.0%
CACATCCTGGTTAACTCAGC+CGG + chr7.1:13420904-13420923 MS.gene018066:CDS 50.0%
CGATTTGAAGGCTTCTTCGG+CGG - chr7.1:13420878-13420897 None:intergenic 50.0%
GACCGAGTTGCAATTGTCAC+CGG + chr7.1:13420655-13420674 MS.gene018066:CDS 50.0%
GAGAGTCCGTTTGGAAGACT+TGG + chr7.1:13421279-13421298 MS.gene018066:CDS 50.0%
GATGACGAAGATTCTGGCGA+AGG + chr7.1:13421149-13421168 MS.gene018066:CDS 50.0%
GATTCTGGCGAAGGAGTTGA+AGG + chr7.1:13421158-13421177 MS.gene018066:CDS 50.0%
GGAAGCGATGACGAAGATTC+TGG + chr7.1:13421143-13421162 MS.gene018066:CDS 50.0%
GGAATCAGCATGGTTGGAGT+TGG - chr7.1:13420758-13420777 None:intergenic 50.0%
GGCTACCGATGCTTCTGAAT+GGG + chr7.1:13421338-13421357 MS.gene018066:CDS 50.0%
TGATGGGAAAACGGAGGAGA+TGG + chr7.1:13421239-13421258 MS.gene018066:CDS 50.0%
TGGCTACCGATGCTTCTGAA+TGG + chr7.1:13421337-13421356 MS.gene018066:CDS 50.0%
! AGATTTTACACCGGCGGGAT+CGG - chr7.1:13420845-13420864 None:intergenic 50.0%
! GCATCGAATCGTTTGAAGCG+AGG + chr7.1:13421030-13421049 MS.gene018066:CDS 50.0%
! TCGAATCGTTTGAAGCGAGG+CGG + chr7.1:13421033-13421052 MS.gene018066:CDS 50.0%
!! CGATCTCTTTACCGATTCCG+CGG - chr7.1:13420687-13420706 None:intergenic 50.0%
!! GATCTCTTTACCGATTCCGC+GGG - chr7.1:13420686-13420705 None:intergenic 50.0%
!! GGCTCGTAAAGTGGTTTGGT+TGG - chr7.1:13420800-13420819 None:intergenic 50.0%
!! TTGGTTGGTGTTGATCTCGG+CGG - chr7.1:13420785-13420804 None:intergenic 50.0%
AGCTTACACGGCGTCAAAGG+CGG + chr7.1:13421116-13421135 MS.gene018066:CDS 55.0%
CGAAGGAGTTGAAGGGAACG+GGG + chr7.1:13421166-13421185 MS.gene018066:CDS 55.0%
GCGAAGGAGTTGAAGGGAAC+GGG + chr7.1:13421165-13421184 MS.gene018066:CDS 55.0%
GGCGAAGGAGTTGAAGGGAA+CGG + chr7.1:13421164-13421183 MS.gene018066:CDS 55.0%
GGGGATTACTGCGAATTGCG+TGG + chr7.1:13421185-13421204 MS.gene018066:CDS 55.0%
TACTGCGAATTGCGTGGCAC+CGG + chr7.1:13421191-13421210 MS.gene018066:CDS 55.0%
! AATCGTTTGAAGCGAGGCGG+AGG + chr7.1:13421036-13421055 MS.gene018066:CDS 55.0%
! GACGGTGATGGCTCGTAAAG+TGG - chr7.1:13420809-13420828 None:intergenic 55.0%
ACTGCGAATTGCGTGGCACC+GGG + chr7.1:13421192-13421211 MS.gene018066:CDS 60.0%
ATCTCCGTCGCAATCGGTCC+CGG - chr7.1:13421213-13421232 None:intergenic 60.0%
GCCCTCCACCTTGCTTCACT+CGG + chr7.1:13420706-13420725 MS.gene018066:CDS 60.0%
GCCGAGTGAAGCAAGGTGGA+GGG - chr7.1:13420710-13420729 None:intergenic 60.0%
GGCGACGGAATCAGCATGGT+TGG - chr7.1:13420764-13420783 None:intergenic 60.0%
GGGAGCTTACACGGCGTCAA+AGG + chr7.1:13421113-13421132 MS.gene018066:CDS 60.0%
GTCTTGCGCCGAGTGAAGCA+AGG - chr7.1:13420717-13420736 None:intergenic 60.0%
TTGCGCCGAGTGAAGCAAGG+TGG - chr7.1:13420714-13420733 None:intergenic 60.0%
! GTTTGAAGCGAGGCGGAGGA+GGG + chr7.1:13421040-13421059 MS.gene018066:CDS 60.0%
! TGGTAGGGTACTTGGCGTCG+AGG - chr7.1:13420933-13420952 None:intergenic 60.0%
!! AGGAGCGTTTCTCTGCGCGA+AGG + chr7.1:13421005-13421024 MS.gene018066:CDS 60.0%
!! ATTGTCACCGGTTCCTCCCG+CGG + chr7.1:13420667-13420686 MS.gene018066:CDS 60.0%
!! CTCTTTACCGATTCCGCGGG+AGG - chr7.1:13420683-13420702 None:intergenic 60.0%
ATCGGACACGTCAGCGCGGA+CGG - chr7.1:13420827-13420846 None:intergenic 65.0%
CGCCGAGTGAAGCAAGGTGG+AGG - chr7.1:13420711-13420730 None:intergenic 65.0%
! ACCGATTCCGCGGGAGGAAC+CGG - chr7.1:13420677-13420696 None:intergenic 65.0%
! ACCGGTTCCTCCCGCGGAAT+CGG + chr7.1:13420673-13420692 MS.gene018066:CDS 65.0%
! CGTTTGAAGCGAGGCGGAGG+AGG + chr7.1:13421039-13421058 MS.gene018066:CDS 65.0%
! GGACGCCGGCTGAGTTAACC+AGG - chr7.1:13420912-13420931 None:intergenic 65.0%
! GTACTTGGCGTCGAGGACGC+CGG - chr7.1:13420926-13420945 None:intergenic 65.0%
!! GGTGTTGATCTCGGCGGCGA+CGG - chr7.1:13420779-13420798 None:intergenic 65.0%
CACGGCGTCAAAGGCGGCTG+TGG + chr7.1:13421122-13421141 MS.gene018066:CDS 70.0%
CACGTCAGCGCGGACGGTGA+TGG - chr7.1:13420821-13420840 None:intergenic 70.0%
CGGCGGCGACGGAATCAGCA+TGG - chr7.1:13420768-13420787 None:intergenic 70.0%
CGGGATCGGACACGTCAGCG+CGG - chr7.1:13420831-13420850 None:intergenic 70.0%
GCTGACGTGTCCGATCCCGC+CGG + chr7.1:13420832-13420851 MS.gene018066:CDS 70.0%
! GGCACCGGGACCGATTGCGA+CGG + chr7.1:13421206-13421225 MS.gene018066:CDS 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 13420634 13421401 13420634 ID=MS.gene018066
chr7.1 mRNA 13420634 13421401 13420634 ID=MS.gene018066.t1;Parent=MS.gene018066
chr7.1 exon 13420634 13421401 13420634 ID=MS.gene018066.t1.exon1;Parent=MS.gene018066.t1
chr7.1 CDS 13420634 13421401 13420634 ID=cds.MS.gene018066.t1;Parent=MS.gene018066.t1
Gene Sequence

>MS.gene018066

ATGGCTTCGCTACCGCTTAAAGACCGAGTTGCAATTGTCACCGGTTCCTCCCGCGGAATCGGTAAAGAGATCGCCCTCCACCTTGCTTCACTCGGCGCAAGACTCGTCATCAACTACACCTCCAACTCCAACCATGCTGATTCCGTCGCCGCCGAGATCAACACCAACCAAACCACTTTACGAGCCATCACCGTCCGCGCTGACGTGTCCGATCCCGCCGGTGTAAAATCTCTCTTCGACTCCGCCGAAGAAGCCTTCAAATCGCCTGTTCACATCCTGGTTAACTCAGCCGGCGTCCTCGACGCCAAGTACCCTACCATTGCAAACACAACCGTTGAAAGCTTCGATCGTATCATGAACATAAACTTAAAAGGAGCGTTTCTCTGCGCGAAGGAAGCATCGAATCGTTTGAAGCGAGGCGGAGGAGGGAGAATCATACTTCTGACATCGTCGTTGGTGGCAGCGTTGAAGATTTACATGGGAGCTTACACGGCGTCAAAGGCGGCTGTGGAAGCGATGACGAAGATTCTGGCGAAGGAGTTGAAGGGAACGGGGATTACTGCGAATTGCGTGGCACCGGGACCGATTGCGACGGAGATGTTTTTTGATGGGAAAACGGAGGAGATGGTGAAGAAAACTGAAGAAGAGAGTCCGTTTGGAAGACTTGGTGAAACTAAAGATGTTGCTCCTGTTGTTGGTTTTTTGGCTACCGATGCTTCTGAATGGGTTAATGGTCAAATTATTCGTGTTAATGGTGGCTATGTTTAG
Protein sequence

>MS.gene018066.t1

MASLPLKDRVAIVTGSSRGIGKEIALHLASLGARLVINYTSNSNHADSVAAEINTNQTTLRAITVRADVSDPAGVKSLFDSAEEAFKSPVHILVNSAGVLDAKYPTIANTTVESFDRIMNINLKGAFLCAKEASNRLKRGGGGRIILLTSSLVAALKIYMGAYTASKAAVEAMTKILAKELKGTGITANCVAPGPIATEMFFDGKTEEMVKKTEEESPFGRLGETKDVAPVVGFLATDASEWVNGQIIRVNGGYV