AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene42260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42260.t1 MTR_7g107670 92.241 232 18 0 35 266 32 263 2.41e-155 435
MS.gene42260.t1 MTR_3g113870 87.330 221 23 1 29 249 19 234 2.57e-136 384
MS.gene42260.t1 MTR_7g083870 52.245 245 114 2 25 266 22 266 2.07e-87 263
MS.gene42260.t1 MTR_4g052350 48.936 235 111 3 33 266 11 237 2.97e-68 213
MS.gene42260.t1 MTR_4g052340 48.085 235 113 3 33 266 11 237 3.24e-68 213
MS.gene42260.t1 MTR_7g071680 42.276 246 128 4 35 266 28 273 1.73e-65 207
MS.gene42260.t1 MTR_4g052300 47.479 238 116 3 30 266 2 231 4.11e-65 204
MS.gene42260.t1 MTR_4g052320 46.639 238 119 3 30 266 2 232 2.09e-64 203
MS.gene42260.t1 MTR_7g105590 52.941 187 87 1 35 220 7 193 2.04e-60 190
MS.gene42260.t1 MTR_4g078630 42.400 250 135 6 21 266 6 250 8.69e-58 186
MS.gene42260.t1 MTR_7g105460 46.414 237 113 3 35 266 12 239 1.88e-57 185
MS.gene42260.t1 MTR_7g105580 45.494 233 103 3 35 266 7 216 2.56e-57 184
MS.gene42260.t1 MTR_7g110130 40.586 239 125 5 35 266 5 233 2.03e-53 175
MS.gene42260.t1 MTR_3g020670 42.979 235 131 2 35 266 15 249 1.78e-52 172
MS.gene42260.t1 MTR_6g023590 38.983 236 136 5 34 266 11 241 1.63e-51 170
MS.gene42260.t1 MTR_2g090165 38.889 234 135 4 35 266 5 232 2.04e-49 164
MS.gene42260.t1 MTR_6g023910 41.951 205 116 3 28 229 5 209 3.27e-49 164
MS.gene42260.t1 MTR_7g110140 40.426 235 132 6 34 266 4 232 2.33e-47 159
MS.gene42260.t1 MTR_6g023990 38.136 236 138 5 34 266 12 242 3.23e-47 159
MS.gene42260.t1 MTR_6g023610 37.553 237 138 5 34 266 11 241 4.20e-47 159
MS.gene42260.t1 MTR_6g023950 39.407 236 135 5 34 266 11 241 2.82e-46 156
MS.gene42260.t1 MTR_6g023600 38.136 236 138 5 34 266 11 241 1.91e-45 154
MS.gene42260.t1 MTR_6g035395 39.056 233 123 5 35 266 4 218 2.05e-45 154
MS.gene42260.t1 MTR_7g110160 38.034 234 119 4 35 266 5 214 1.18e-44 151
MS.gene42260.t1 MTR_6g023600 37.288 236 134 6 34 266 11 235 3.44e-41 143
MS.gene42260.t1 MTR_4g084800 52.273 132 62 1 35 165 12 143 3.75e-39 134
MS.gene42260.t1 MTR_7g105570 37.021 235 85 4 36 266 21 196 4.11e-36 129
MS.gene42260.t1 MTR_3g085740 27.481 262 170 6 26 279 65 314 1.51e-22 95.1
MS.gene42260.t1 MTR_7g094510 32.323 198 121 7 34 221 4 198 1.21e-17 80.5
MS.gene42260.t1 MTR_4g132850 27.604 192 132 5 35 223 6 193 9.77e-17 78.2
MS.gene42260.t1 MTR_3g068070 27.586 232 155 6 36 257 15 243 1.87e-16 77.8
MS.gene42260.t1 MTR_4g097510 27.041 196 140 2 37 231 3 196 7.91e-16 75.9
MS.gene42260.t1 MTR_3g068085 27.586 232 155 6 36 257 15 243 1.09e-15 75.5
MS.gene42260.t1 MTR_1196s0010 30.319 188 121 6 34 216 271 453 2.08e-15 76.3
MS.gene42260.t1 MTR_3g068155 28.866 194 132 4 35 224 18 209 5.03e-15 73.6
MS.gene42260.t1 MTR_7g080410 29.897 194 126 5 36 221 38 229 8.69e-15 73.6
MS.gene42260.t1 MTR_7g080410 29.897 194 126 5 36 221 38 229 1.44e-14 72.8
MS.gene42260.t1 MTR_7g094520 29.101 189 125 4 36 216 11 198 1.80e-14 72.0
MS.gene42260.t1 MTR_3g068065 28.125 192 132 4 36 223 17 206 2.10e-14 72.0
MS.gene42260.t1 MTR_3g087850 28.962 183 121 4 40 219 30 206 4.87e-14 71.2
MS.gene42260.t1 MTR_7g113650 25.581 215 139 5 30 230 34 241 1.75e-13 69.7
MS.gene42260.t1 MTR_1g082760 26.570 207 135 4 30 224 34 235 2.18e-13 69.3
MS.gene42260.t1 MTR_7g063260 29.327 208 137 4 28 229 8 211 8.63e-13 67.4
MS.gene42260.t1 MTR_3g068175 28.061 196 131 4 35 224 16 207 9.81e-13 67.0
MS.gene42260.t1 MTR_4g086400 28.718 195 124 4 41 221 9 202 1.03e-12 68.6
MS.gene42260.t1 MTR_4g064887 26.291 213 140 5 36 242 15 216 1.09e-12 67.0
MS.gene42260.t1 MTR_4g064887 27.320 194 131 4 36 223 15 204 1.89e-12 65.5
MS.gene42260.t1 MTR_4g086410 29.231 195 123 4 41 221 9 202 1.98e-12 67.4
MS.gene42260.t1 MTR_4g131740 26.829 205 136 5 35 228 39 240 2.49e-12 66.2
MS.gene42260.t1 MTR_7g105560 58.824 51 21 0 35 85 12 62 8.73e-12 62.4
MS.gene42260.t1 MTR_4g064883 25.907 193 137 4 36 224 14 204 1.17e-11 63.2
MS.gene42260.t1 MTR_4g064883 25.773 194 138 4 35 224 13 204 3.00e-11 62.8
MS.gene42260.t1 MTR_8g044240 26.289 194 133 4 42 225 75 268 5.17e-11 62.8
MS.gene42260.t1 MTR_3g087860 26.036 169 117 3 53 219 29 191 5.38e-11 62.4
MS.gene42260.t1 MTR_3g068175 27.500 200 131 5 35 224 16 211 6.47e-11 62.0
MS.gene42260.t1 MTR_1g068955 28.780 205 120 5 34 221 12 207 7.66e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene42260.t1 AT4G03140 71.121 232 67 0 35 266 77 308 3.28e-117 340
MS.gene42260.t1 AT3G26770 53.648 233 107 1 35 266 40 272 3.96e-87 262
MS.gene42260.t1 AT3G26760 50.638 235 113 2 35 266 35 269 2.41e-82 250
MS.gene42260.t1 AT3G29250 40.996 261 133 6 21 266 14 268 9.10e-60 192
MS.gene42260.t1 AT3G29250 43.404 235 125 4 34 266 4 232 1.21e-59 191
MS.gene42260.t1 AT3G29250 41.065 263 132 6 21 266 14 270 2.99e-59 191
MS.gene42260.t1 AT2G47120 41.277 235 128 6 34 266 4 230 4.38e-59 189
MS.gene42260.t1 AT2G47130 43.220 236 123 6 34 266 4 231 5.45e-59 189
MS.gene42260.t1 AT2G47120 41.102 236 129 6 33 266 4 231 9.01e-59 188
MS.gene42260.t1 AT3G51680 43.443 244 126 4 35 266 31 274 6.06e-58 187
MS.gene42260.t1 AT3G29260 40.851 235 128 5 35 266 5 231 2.65e-56 182
MS.gene42260.t1 AT2G47140 38.889 234 135 5 35 266 5 232 3.77e-52 171
MS.gene42260.t1 AT1G52340 43.320 247 116 6 35 266 17 254 1.90e-48 162
MS.gene42260.t1 AT3G42960 40.000 245 140 5 35 275 7 248 4.46e-48 161
MS.gene42260.t1 AT2G47150 36.806 144 70 3 36 178 1 124 1.53e-20 87.4
MS.gene42260.t1 AT1G24360 30.851 188 124 3 33 216 71 256 8.33e-19 85.1
MS.gene42260.t1 AT1G63380 32.075 212 128 8 16 216 2 208 1.29e-18 84.0
MS.gene42260.t1 AT1G63380 32.642 193 117 7 35 216 21 211 1.16e-17 81.3
MS.gene42260.t1 AT1G63380 32.642 193 117 7 35 216 16 206 1.26e-17 81.3
MS.gene42260.t1 AT1G63380 32.642 193 117 7 35 216 14 204 1.30e-17 80.9
MS.gene42260.t1 AT1G62610 31.604 212 129 8 16 216 2 208 2.07e-17 80.5
MS.gene42260.t1 AT1G54870 28.372 215 141 4 26 230 72 283 4.32e-17 80.5
MS.gene42260.t1 AT1G54870 28.372 215 141 4 26 230 74 285 4.71e-17 80.1
MS.gene42260.t1 AT1G62610 32.124 193 118 7 35 216 12 202 1.48e-16 78.2
MS.gene42260.t1 AT1G62610 32.124 193 118 7 35 216 13 203 1.52e-16 78.2
MS.gene42260.t1 AT1G62610 32.124 193 118 7 35 216 14 204 1.72e-16 77.8
MS.gene42260.t1 AT5G18210 32.178 202 121 7 33 221 5 203 2.80e-16 77.0
MS.gene42260.t1 AT5G18210 32.178 202 121 7 33 221 5 203 3.49e-16 77.0
MS.gene42260.t1 AT3G03980 31.100 209 128 5 28 221 6 213 7.12e-16 75.9
MS.gene42260.t1 AT1G49670 30.769 195 120 4 41 221 9 202 9.83e-16 77.4
MS.gene42260.t1 AT1G49670 30.769 195 120 4 41 221 9 202 1.18e-15 77.0
MS.gene42260.t1 AT5G06060 25.118 211 148 4 24 230 1 205 2.65e-15 74.3
MS.gene42260.t1 AT1G07450 26.695 236 158 6 35 266 7 231 3.13e-15 73.9
MS.gene42260.t1 AT2G17845 29.464 224 139 7 35 243 46 265 4.03e-15 74.3
MS.gene42260.t1 AT2G29340 27.041 196 137 3 32 223 3 196 4.35e-15 72.8
MS.gene42260.t1 AT2G29340 27.041 196 137 3 32 223 3 196 4.35e-15 72.8
MS.gene42260.t1 AT2G29340 25.980 204 145 3 32 231 3 204 5.32e-15 73.6
MS.gene42260.t1 AT2G29340 25.980 204 145 3 32 231 3 204 1.25e-14 73.2
MS.gene42260.t1 AT3G46170 32.292 192 118 7 35 216 25 214 1.26e-14 72.8
MS.gene42260.t1 AT3G55290 30.631 222 136 8 35 243 17 233 1.65e-14 72.4
MS.gene42260.t1 AT3G55290 30.631 222 136 8 35 243 16 232 1.76e-14 72.4
MS.gene42260.t1 AT4G05530 29.167 192 129 5 35 223 8 195 2.30e-14 71.6
MS.gene42260.t1 AT2G29310 26.778 239 161 6 32 266 3 231 3.15e-14 71.2
MS.gene42260.t1 AT3G55310 31.390 223 133 9 35 243 16 232 5.57e-14 70.9
MS.gene42260.t1 AT3G47350 27.861 201 132 6 39 232 47 241 5.77e-14 71.2
MS.gene42260.t1 AT2G29310 27.551 196 136 3 32 223 3 196 6.14e-14 69.3
MS.gene42260.t1 AT3G47350 28.856 201 130 7 39 232 47 241 6.82e-14 70.9
MS.gene42260.t1 AT5G04900 27.461 193 131 3 42 225 83 275 1.20e-13 70.5
MS.gene42260.t1 AT3G05260 26.047 215 145 4 26 230 27 237 1.50e-13 69.7
MS.gene42260.t1 AT3G04000 26.872 227 138 5 36 240 14 234 3.54e-13 68.6
MS.gene42260.t1 AT2G29360 27.488 211 139 6 20 224 4 206 6.09e-13 67.8
MS.gene42260.t1 AT2G29330 25.532 235 161 6 32 262 3 227 7.55e-13 67.4
MS.gene42260.t1 AT2G29290 27.411 197 137 3 32 224 3 197 7.87e-13 67.4
MS.gene42260.t1 AT2G30670 25.957 235 160 6 32 262 3 227 8.42e-13 67.4
MS.gene42260.t1 AT1G10310 28.351 194 123 4 39 224 18 203 8.44e-13 67.0
MS.gene42260.t1 AT5G65205 28.495 186 124 4 37 219 7 186 1.11e-12 67.0
MS.gene42260.t1 AT2G29300 24.180 244 162 7 32 266 3 232 7.27e-12 64.7
MS.gene42260.t1 AT2G29320 26.531 196 137 4 31 221 8 201 7.33e-12 63.5
MS.gene42260.t1 AT2G29300 24.180 244 162 7 32 266 3 232 1.51e-11 63.5
MS.gene42260.t1 AT2G29320 26.531 196 137 4 31 221 8 201 1.64e-11 63.5
MS.gene42260.t1 AT2G29260 25.106 235 162 7 36 266 68 292 3.42e-11 63.2
MS.gene42260.t1 AT3G06060 30.769 195 124 6 34 222 35 224 4.70e-11 62.8
MS.gene42260.t1 AT3G06060 30.769 195 124 6 34 222 52 241 5.62e-11 62.8
MS.gene42260.t1 AT5G50600 28.000 200 134 7 21 216 33 226 6.08e-11 62.4
MS.gene42260.t1 AT5G50700 28.000 200 134 7 21 216 33 226 6.08e-11 62.4

Find 60 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCACAATTCGCTCCTTTC+AGG 0.161977 3.2:-90298839 None:intergenic
GACAAGGTAGCACTCATAAC+TGG 0.256050 3.2:+90298204 MS.gene42260:CDS
GTATCCAAGTTTGCGGTTAT+AGG 0.264110 3.2:+90298654 MS.gene42260:CDS
GCAAGAAAATTCATCAATAA+TGG 0.327600 3.2:+90298255 MS.gene42260:CDS
TTATAGGGATGCAAGGAAAA+AGG 0.362837 3.2:+90297550 MS.gene42260:intron
CTTTATCAGCGGGCATACTT+TGG 0.371890 3.2:+90298885 MS.gene42260:CDS
GTGTGAGATCTGATTCATTT+TGG 0.372785 3.2:+90297603 MS.gene42260:CDS
AATAAATGTTTGTGGCGTTA+TGG 0.400168 3.2:+90298521 MS.gene42260:CDS
CAAGTTATGAAGGTAGCATT+AGG 0.406451 3.2:-90298342 None:intergenic
AGATCGAGGTCAATAACGTT+TGG 0.408258 3.2:-90298474 None:intergenic
TGCAGCATTAGCAATATCAT+TGG 0.411118 3.2:-90298862 None:intergenic
GTAATGATCCCGCGTGGAAC+TGG 0.412710 3.2:+90298567 MS.gene42260:CDS
TTTCCTGGCCAAGTTGTTGT+TGG 0.418117 3.2:-90298302 None:intergenic
ATTGACTCGGATTTCATGCC+TGG 0.424967 3.2:-90298706 None:intergenic
GTAGAAATTGTTCATAATGT+TGG 0.425856 3.2:+90298813 MS.gene42260:CDS
CTATGCACTGCCAGTGTCAC+TGG 0.430322 3.2:+90298597 MS.gene42260:CDS
AATGCCTATAACCGCAAACT+TGG 0.438642 3.2:-90298658 None:intergenic
CCATGGCTTCAGAGCTATCC+AGG 0.442092 3.2:+90298688 MS.gene42260:CDS
GCCAGTGTCACTGGTGTGAT+TGG 0.442709 3.2:+90298606 MS.gene42260:CDS
GATATCATGTATAACAATGC+AGG 0.475659 3.2:+90298432 MS.gene42260:CDS
ATACTCTGTATCCAAGTTTG+CGG 0.478404 3.2:+90298647 MS.gene42260:CDS
GTCATGAAAATAAATGTTTG+TGG 0.480828 3.2:+90298513 MS.gene42260:CDS
TATAGGCATTGTTAAATCCA+TGG 0.486525 3.2:+90298671 MS.gene42260:CDS
CAGCGGGCATACTTTGGCTG+TGG 0.491992 3.2:+90298891 MS.gene42260:CDS
TAATGCTGCACTTTATCAGC+GGG 0.498717 3.2:+90298875 MS.gene42260:CDS
AAGTTGTTTGTATTCAGAAA+CGG 0.501899 3.2:-90298409 None:intergenic
TCCATTTCGCACATGACAAA+AGG 0.506027 3.2:-90298756 None:intergenic
GCAGCATTAGCAATATCATT+GGG 0.508284 3.2:-90298861 None:intergenic
AATGTTTGTGGCGTTATGGC+TGG 0.510119 3.2:+90298525 MS.gene42260:CDS
TGTGACGTTGCAAGTTATGA+AGG 0.510852 3.2:-90298352 None:intergenic
CAGGAAACTGCAAAAGAACT+AGG 0.510876 3.2:+90298318 MS.gene42260:CDS
GACACTGGCAGTGCATAGAA+TGG 0.519009 3.2:-90298592 None:intergenic
CCTGGATAGCTCTGAAGCCA+TGG 0.523976 3.2:-90298688 None:intergenic
CATACTTTGGCTGTGGATGG+AGG 0.528711 3.2:+90298898 MS.gene42260:CDS
ACAAGGTAGCACTCATAACT+GGG 0.533686 3.2:+90298205 MS.gene42260:CDS
AGTGTCACTGGTGTGATTGG+AGG 0.535327 3.2:+90298609 MS.gene42260:CDS
CACTGGTGTGATTGGAGGGA+TGG 0.539300 3.2:+90298614 MS.gene42260:CDS
TCCAATCACACCAGTGACAC+TGG 0.545725 3.2:-90298607 None:intergenic
GTGTCACTGGTGTGATTGGA+GGG 0.547063 3.2:+90298610 MS.gene42260:CDS
ATTTGTCTTATAGGGATGCA+AGG 0.549438 3.2:+90297543 MS.gene42260:intron
GCTGATATCCAACAACAACT+TGG 0.550507 3.2:+90298294 MS.gene42260:CDS
GGGCATACTTTGGCTGTGGA+TGG 0.556081 3.2:+90298895 MS.gene42260:CDS
TCGAGGTCAATAACGTTTGG+AGG 0.558071 3.2:-90298471 None:intergenic
TGATGGTTTGCATCGAGCAA+AGG 0.559135 3.2:+90297393 None:intergenic
TATCCAACAACAACTTGGCC+AGG 0.561816 3.2:+90298299 MS.gene42260:CDS
CATAATGTTGGAGTCCTGAA+AGG 0.573360 3.2:+90298825 MS.gene42260:CDS
AAAGGAGTAGGAATAGCAAA+AGG 0.575525 3.2:-90298738 None:intergenic
ATATCATGTATAACAATGCA+GGG 0.592185 3.2:+90298433 MS.gene42260:CDS
TCGCACATGACAAAAGGAGT+AGG 0.606020 3.2:-90298750 None:intergenic
CTAATGCTGCACTTTATCAG+CGG 0.624216 3.2:+90298874 MS.gene42260:CDS
ATGAATCAGATCTCACACAC+TGG 0.636749 3.2:-90297598 None:intergenic
GTCAAGGAAGCTACAAGACA+AGG 0.659741 3.2:+90298188 MS.gene42260:intron
AAGGCGATATACAATTGACT+CGG 0.673213 3.2:-90298719 None:intergenic
AGTCGCTGCGAATCAAGATG+TGG 0.674277 3.2:-90298789 None:intergenic
GAATGGATCCAGTTCCACGC+GGG 0.678631 3.2:-90298575 None:intergenic
TGTCAAACGATTCTAGATCG+AGG 0.680208 3.2:-90298488 None:intergenic
CAAGGTAGCACTCATAACTG+GGG 0.699303 3.2:+90298206 MS.gene42260:CDS
AAGGTAGCACTCATAACTGG+GGG 0.699422 3.2:+90298207 MS.gene42260:CDS
GCGTGTGTAATGATCCCGCG+TGG 0.774598 3.2:+90298561 MS.gene42260:CDS
AGAATGGATCCAGTTCCACG+CGG 0.782409 3.2:-90298576 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAGTAAATATTATCAAA+AGG + chr3.2:90298116-90298135 MS.gene42260:intron 10.0%
!!! TAATTTTTATTTGTCTTATA+GGG + chr3.2:90297535-90297554 MS.gene42260:intron 10.0%
!! AGTAAATTTAAATAGAGAAA+AGG - chr3.2:90297667-90297686 None:intergenic 15.0%
!!! CTAATTTTTATTTGTCTTAT+AGG + chr3.2:90297534-90297553 MS.gene42260:intron 15.0%
!! AAAAAAAAAGTGACTTTCAA+TGG - chr3.2:90297510-90297529 None:intergenic 20.0%
! AAACTAAAGACAAAAACTGA+AGG - chr3.2:90297924-90297943 None:intergenic 25.0%
! AAGTTGTTTGTATTCAGAAA+CGG - chr3.2:90298412-90298431 None:intergenic 25.0%
! ATATCATGTATAACAATGCA+GGG + chr3.2:90298433-90298452 MS.gene42260:CDS 25.0%
! ATCCTATGGATAAATAGAAA+AGG - chr3.2:90297954-90297973 None:intergenic 25.0%
! GATATTCAATAGTAGATAAC+TGG - chr3.2:90297760-90297779 None:intergenic 25.0%
! GCAAGAAAATTCATCAATAA+TGG + chr3.2:90298255-90298274 MS.gene42260:CDS 25.0%
! GTAGAAATTGTTCATAATGT+TGG + chr3.2:90298813-90298832 MS.gene42260:CDS 25.0%
! GTCATGAAAATAAATGTTTG+TGG + chr3.2:90298513-90298532 MS.gene42260:CDS 25.0%
! GTTAAGGAATATATATGCAT+AGG - chr3.2:90297446-90297465 None:intergenic 25.0%
! TATTCTGATAAAAACTTGAC+TGG + chr3.2:90297988-90298007 MS.gene42260:intron 25.0%
! TGTTATAGAAAAAGATACTG+CGG - chr3.2:90297486-90297505 None:intergenic 25.0%
!! AGTGTTAATTTGGTTAATCT+TGG + chr3.2:90297793-90297812 MS.gene42260:intron 25.0%
!! TTCCTTTTCTATTTATCCAT+AGG + chr3.2:90297949-90297968 MS.gene42260:intron 25.0%
!! TTTTCTATTTATCCATAGGA+TGG + chr3.2:90297953-90297972 MS.gene42260:intron 25.0%
!!! TGACTAAGAGTATTATATCA+TGG - chr3.2:90298030-90298049 None:intergenic 25.0%
AATAAATGTTTGTGGCGTTA+TGG + chr3.2:90298521-90298540 MS.gene42260:CDS 30.0%
CAACTTCTGTAGTGTTAATT+TGG + chr3.2:90297783-90297802 MS.gene42260:intron 30.0%
GATATCATGTATAACAATGC+AGG + chr3.2:90298432-90298451 MS.gene42260:CDS 30.0%
GTTATAGAAAAAGATACTGC+GGG - chr3.2:90297485-90297504 None:intergenic 30.0%
! AAGGTGAAAGCATAAAAATG+AGG - chr3.2:90297648-90297667 None:intergenic 30.0%
! CTTTTCATTTACGTTTGATG+TGG + chr3.2:90298163-90298182 MS.gene42260:intron 30.0%
! TATAGGCATTGTTAAATCCA+TGG + chr3.2:90298671-90298690 MS.gene42260:CDS 30.0%
AAAGGAGTAGGAATAGCAAA+AGG - chr3.2:90298741-90298760 None:intergenic 35.0%
AAGGCGATATACAATTGACT+CGG - chr3.2:90298722-90298741 None:intergenic 35.0%
AATAACAGTTTGCCATCCTA+TGG - chr3.2:90297968-90297987 None:intergenic 35.0%
ATACTCTGTATCCAAGTTTG+CGG + chr3.2:90298647-90298666 MS.gene42260:CDS 35.0%
ATTTGTCTTATAGGGATGCA+AGG + chr3.2:90297543-90297562 MS.gene42260:intron 35.0%
CAAGTTATGAAGGTAGCATT+AGG - chr3.2:90298345-90298364 None:intergenic 35.0%
GCAGCATTAGCAATATCATT+GGG - chr3.2:90298864-90298883 None:intergenic 35.0%
TATTGTCTACTCAGACTGTA+AGG + chr3.2:90297884-90297903 MS.gene42260:intron 35.0%
TGCAGCATTAGCAATATCAT+TGG - chr3.2:90298865-90298884 None:intergenic 35.0%
TTAGATTAATCAAACGACCG+AGG + chr3.2:90298050-90298069 MS.gene42260:intron 35.0%
TTATAGGGATGCAAGGAAAA+AGG + chr3.2:90297550-90297569 MS.gene42260:intron 35.0%
TTCATTTACGTTTGATGTGG+TGG + chr3.2:90298166-90298185 MS.gene42260:intron 35.0%
! ACAAAAACTGAAGGCTTGTT+AGG - chr3.2:90297915-90297934 None:intergenic 35.0%
! GTGTGAGATCTGATTCATTT+TGG + chr3.2:90297603-90297622 MS.gene42260:CDS 35.0%
!! TAATTTGCTCGATGTGGTTA+AGG - chr3.2:90297462-90297481 None:intergenic 35.0%
AATGCCTATAACCGCAAACT+TGG - chr3.2:90298661-90298680 None:intergenic 40.0%
ACAAGGTAGCACTCATAACT+GGG + chr3.2:90298205-90298224 MS.gene42260:CDS 40.0%
AGATCGAGGTCAATAACGTT+TGG - chr3.2:90298477-90298496 None:intergenic 40.0%
ATCATCCTCTGTGGTTTCTT+TGG - chr3.2:90298081-90298100 None:intergenic 40.0%
ATGAATCAGATCTCACACAC+TGG - chr3.2:90297601-90297620 None:intergenic 40.0%
CAGGAAACTGCAAAAGAACT+AGG + chr3.2:90298318-90298337 MS.gene42260:CDS 40.0%
CATAATGTTGGAGTCCTGAA+AGG + chr3.2:90298825-90298844 MS.gene42260:CDS 40.0%
CATCATTTGATCATCCTCTG+TGG - chr3.2:90298090-90298109 None:intergenic 40.0%
CTAATGCTGCACTTTATCAG+CGG + chr3.2:90298874-90298893 MS.gene42260:CDS 40.0%
GCTGATATCCAACAACAACT+TGG + chr3.2:90298294-90298313 MS.gene42260:CDS 40.0%
GTATCCAAGTTTGCGGTTAT+AGG + chr3.2:90298654-90298673 MS.gene42260:CDS 40.0%
TAATGCTGCACTTTATCAGC+GGG + chr3.2:90298875-90298894 MS.gene42260:CDS 40.0%
TCCATTTCGCACATGACAAA+AGG - chr3.2:90298759-90298778 None:intergenic 40.0%
TCTACTCAGACTGTAAGGTA+TGG + chr3.2:90297889-90297908 MS.gene42260:intron 40.0%
TGGTTTCTTTGGTCTAACCT+CGG - chr3.2:90298070-90298089 None:intergenic 40.0%
TGTCAAACGATTCTAGATCG+AGG - chr3.2:90298491-90298510 None:intergenic 40.0%
TGTGACGTTGCAAGTTATGA+AGG - chr3.2:90298355-90298374 None:intergenic 40.0%
TTAGACCAAAGAAACCACAG+AGG + chr3.2:90298073-90298092 MS.gene42260:intron 40.0%
! TCCTTTTGTCATGTGCGAAA+TGG + chr3.2:90298755-90298774 MS.gene42260:CDS 40.0%
!! CTAGTTCTTTTGCAGTTTCC+TGG - chr3.2:90298320-90298339 None:intergenic 40.0%
AAGGTAGCACTCATAACTGG+GGG + chr3.2:90298207-90298226 MS.gene42260:CDS 45.0%
AATGTTTGTGGCGTTATGGC+TGG + chr3.2:90298525-90298544 MS.gene42260:CDS 45.0%
CAAGGTAGCACTCATAACTG+GGG + chr3.2:90298206-90298225 MS.gene42260:CDS 45.0%
CTTTATCAGCGGGCATACTT+TGG + chr3.2:90298885-90298904 MS.gene42260:CDS 45.0%
GACAAGGTAGCACTCATAAC+TGG + chr3.2:90298204-90298223 MS.gene42260:CDS 45.0%
GATGCAAGGAAAAAGGTCAG+AGG + chr3.2:90297557-90297576 MS.gene42260:CDS 45.0%
GTCAAGGAAGCTACAAGACA+AGG + chr3.2:90298188-90298207 MS.gene42260:intron 45.0%
GTTCACAATTCGCTCCTTTC+AGG - chr3.2:90298842-90298861 None:intergenic 45.0%
TACGTTTGATGTGGTGGTCA+AGG + chr3.2:90298172-90298191 MS.gene42260:intron 45.0%
TATCCAACAACAACTTGGCC+AGG + chr3.2:90298299-90298318 MS.gene42260:CDS 45.0%
TCGAGGTCAATAACGTTTGG+AGG - chr3.2:90298474-90298493 None:intergenic 45.0%
TCGCACATGACAAAAGGAGT+AGG - chr3.2:90298753-90298772 None:intergenic 45.0%
TTTCCTGGCCAAGTTGTTGT+TGG - chr3.2:90298305-90298324 None:intergenic 45.0%
! AACGTTTGGAGGAGTTTTGC+AGG - chr3.2:90298463-90298482 None:intergenic 45.0%
! ACGTTTGGAGGAGTTTTGCA+GGG - chr3.2:90298462-90298481 None:intergenic 45.0%
!! ATTGACTCGGATTTCATGCC+TGG - chr3.2:90298709-90298728 None:intergenic 45.0%
AGAATGGATCCAGTTCCACG+CGG - chr3.2:90298579-90298598 None:intergenic 50.0%
AGTCGCTGCGAATCAAGATG+TGG - chr3.2:90298792-90298811 None:intergenic 50.0%
CATACTTTGGCTGTGGATGG+AGG + chr3.2:90298898-90298917 MS.gene42260:CDS 50.0%
GACACTGGCAGTGCATAGAA+TGG - chr3.2:90298595-90298614 None:intergenic 50.0%
TCCAATCACACCAGTGACAC+TGG - chr3.2:90298610-90298629 None:intergenic 50.0%
! AGTGTCACTGGTGTGATTGG+AGG + chr3.2:90298609-90298628 MS.gene42260:CDS 50.0%
! GTGTCACTGGTGTGATTGGA+GGG + chr3.2:90298610-90298629 MS.gene42260:CDS 50.0%
!! TGCGGGTAATTTGCTCGATG+TGG - chr3.2:90297468-90297487 None:intergenic 50.0%
ACTGGGGGAGCTAGTGGAAT+AGG + chr3.2:90298222-90298241 MS.gene42260:CDS 55.0%
CACTGGTGTGATTGGAGGGA+TGG + chr3.2:90298614-90298633 MS.gene42260:CDS 55.0%
CCATGGCTTCAGAGCTATCC+AGG + chr3.2:90298688-90298707 MS.gene42260:CDS 55.0%
CTATGCACTGCCAGTGTCAC+TGG + chr3.2:90298597-90298616 MS.gene42260:CDS 55.0%
CTCATAACTGGGGGAGCTAG+TGG + chr3.2:90298216-90298235 MS.gene42260:CDS 55.0%
GAATGGATCCAGTTCCACGC+GGG - chr3.2:90298578-90298597 None:intergenic 55.0%
GGGCATACTTTGGCTGTGGA+TGG + chr3.2:90298895-90298914 MS.gene42260:CDS 55.0%
GTAATGATCCCGCGTGGAAC+TGG + chr3.2:90298567-90298586 MS.gene42260:CDS 55.0%
! GCCAGTGTCACTGGTGTGAT+TGG + chr3.2:90298606-90298625 MS.gene42260:CDS 55.0%
!! CCTGGATAGCTCTGAAGCCA+TGG - chr3.2:90298691-90298710 None:intergenic 55.0%
CAGCGGGCATACTTTGGCTG+TGG + chr3.2:90298891-90298910 MS.gene42260:CDS 60.0%
GCGTGTGTAATGATCCCGCG+TGG + chr3.2:90298561-90298580 MS.gene42260:CDS 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 90297395 90298935 90297395 ID=MS.gene42260
chr3.2 mRNA 90297395 90298935 90297395 ID=MS.gene42260.t1;Parent=MS.gene42260
chr3.2 exon 90297395 90297414 90297395 ID=MS.gene42260.t1.exon1;Parent=MS.gene42260.t1
chr3.2 CDS 90297395 90297414 90297395 ID=cds.MS.gene42260.t1;Parent=MS.gene42260.t1
chr3.2 exon 90297556 90297636 90297556 ID=MS.gene42260.t1.exon2;Parent=MS.gene42260.t1
chr3.2 CDS 90297556 90297636 90297556 ID=cds.MS.gene42260.t1;Parent=MS.gene42260.t1
chr3.2 exon 90298194 90298935 90298194 ID=MS.gene42260.t1.exon3;Parent=MS.gene42260.t1
chr3.2 CDS 90298194 90298935 90298194 ID=cds.MS.gene42260.t1;Parent=MS.gene42260.t1
Gene Sequence

>MS.gene42260

ATGGTTTGCATCGAGCAAAGGTTTTTGTTTGATAACAAAATTATTACTCCTATGCATATATATTCCTTAACCACATCGAGCAAATTACCCGCAGTATCTTTTTCTATAACAACCATTGAAAGTCACTTTTTTTTTCTCTCTAATTTTTATTTGTCTTATAGGGATGCAAGGAAAAAGGTCAGAGGCTCAAACTACATTACACTCCAGTGTGTGAGATCTGATTCATTTTGGCAGAAAATCATGTTTTACACCTCATTTTTATGCTTTCACCTTTTCTCTATTTAAATTTACTTTCTCAGCTATCTATACTTTCAGTTGATGATTAAAAAAAATTAAGTATAAGATGTTCTGTTTGTATTTTTCCAGTTATCTACTATTGAATATCTTTCAACTTCTGTAGTGTTAATTTGGTTAATCTTGGATGCATATATGAAGTTTTGTGAATATGTTTTCAGCTTACAGTGTTTCTGTTAATTATTAAAAACAGATTATTGTCTACTCAGACTGTAAGGTATGGCCTAACAAGCCTTCAGTTTTTGTCTTTAGTTTACATTTTCCTTTTCTATTTATCCATAGGATGGCAAACTGTTATTTATTCTGATAAAAACTTGACTGGCTGATTGATTTAACGACCATGATATAATACTCTTAGTCATTAGATTAATCAAACGACCGAGGTTAGACCAAAGAAACCACAGAGGATGATCAAATGATGCTCAACATTAAGTAAATATTATCAAAAGGATCTTTGTTGTTTATTGTTAAATGCTTTTCATTTACGTTTGATGTGGTGGTCAAGGAAGCTACAAGACAAGGTAGCACTCATAACTGGGGGAGCTAGTGGAATAGGAAAAGCTGCAGCAAGAAAATTCATCAATAATGGAGCAAAAGTAATTATTGCTGATATCCAACAACAACTTGGCCAGGAAACTGCAAAAGAACTAGGACCTAATGCTACCTTCATAACTTGCAACGTCACAAAAGAATCAGACATATCAGATGCAGTTGATTTCGCCGTTTCTGAATACAAACAACTTGATATCATGTATAACAATGCAGGGATACCCTGCAAAACTCCTCCAAACGTTATTGACCTCGATCTAGAATCGTTTGACAAAGTCATGAAAATAAATGTTTGTGGCGTTATGGCTGGCATCAAGCATGCAGCGTGTGTAATGATCCCGCGTGGAACTGGATCCATTCTATGCACTGCCAGTGTCACTGGTGTGATTGGAGGGATGGCGCAGCATACATACTCTGTATCCAAGTTTGCGGTTATAGGCATTGTTAAATCCATGGCTTCAGAGCTATCCAGGCATGAAATCCGAGTCAATTGTATATCGCCTTTTGCTATTCCTACTCCTTTTGTCATGTGCGAAATGGATCAGATATATCCACATCTTGATTCGCAGCGACTTGTAGAAATTGTTCATAATGTTGGAGTCCTGAAAGGAGCGAATTGTGAACCCAATGATATTGCTAATGCTGCACTTTATCAGCGGGCATACTTTGGCTGTGGATGGAGGTTTCACATCTTTTAA
Protein sequence

>MS.gene42260.t1

MVCIEQRDARKKVRGSNYITLQCVRSDSFWQKIMKLQDKVALITGGASGIGKAAARKFINNGAKVIIADIQQQLGQETAKELGPNATFITCNVTKESDISDAVDFAVSEYKQLDIMYNNAGIPCKTPPNVIDLDLESFDKVMKINVCGVMAGIKHAACVMIPRGTGSILCTASVTGVIGGMAQHTYSVSKFAVIGIVKSMASELSRHEIRVNCISPFAIPTPFVMCEMDQIYPHLDSQRLVEIVHNVGVLKGANCEPNDIANAALYQRAYFGCGWRFHIF