AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene012725

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012725.t1 MTR_4g133800 96.746 338 7 1 1 338 1 334 0.0 672
MS.gene012725.t1 MTR_2g437770 60.738 298 116 1 42 339 47 343 2.62e-138 396
MS.gene012725.t1 MTR_8g076820 45.151 299 154 5 50 339 35 332 2.13e-85 261
MS.gene012725.t1 MTR_2g029560 44.590 305 158 6 43 337 22 325 2.60e-84 259
MS.gene012725.t1 MTR_2g029820 44.771 306 158 6 42 337 26 330 8.87e-83 255
MS.gene012725.t1 MTR_5g021060 44.781 297 154 5 50 337 35 330 2.29e-82 253
MS.gene012725.t1 MTR_5g017860 42.071 309 170 4 37 337 19 326 4.18e-82 252
MS.gene012725.t1 MTR_5g017850 42.568 296 161 4 50 337 32 326 8.19e-82 251
MS.gene012725.t1 MTR_2g029740 44.816 299 154 6 50 338 34 331 1.46e-81 252
MS.gene012725.t1 MTR_2g029730 43.974 307 157 7 43 337 23 326 1.63e-81 251
MS.gene012725.t1 MTR_1g054205 43.269 312 165 6 37 337 16 326 9.53e-81 249
MS.gene012725.t1 MTR_2g029815 43.269 312 165 7 37 337 20 330 2.30e-80 249
MS.gene012725.t1 MTR_2g029800 43.791 306 161 6 42 337 26 330 3.14e-80 248
MS.gene012725.t1 MTR_2g029850 43.791 306 161 6 42 337 26 330 4.16e-80 248
MS.gene012725.t1 MTR_2g029830 43.464 306 162 6 42 337 25 329 8.26e-80 248
MS.gene012725.t1 MTR_2g029750 43.974 307 161 6 42 338 26 331 1.06e-79 247
MS.gene012725.t1 MTR_2g028980 42.345 307 166 6 42 338 26 331 1.50e-78 244
MS.gene012725.t1 MTR_2g088770 43.042 309 167 6 37 337 18 325 8.95e-78 241
MS.gene012725.t1 MTR_4g114210 42.434 304 166 3 42 337 18 320 1.08e-77 241
MS.gene012725.t1 MTR_2g008710 40.604 298 169 3 47 337 29 325 4.12e-77 239
MS.gene012725.t1 MTR_7g093370 41.667 312 170 6 37 337 61 371 5.18e-76 238
MS.gene012725.t1 MTR_1g022970 44.224 303 158 6 45 337 46 347 9.06e-76 237
MS.gene012725.t1 MTR_4g031140 42.525 301 161 7 45 337 28 324 1.62e-75 236
MS.gene012725.t1 MTR_2g029860 42.258 310 168 6 38 337 22 330 5.52e-75 235
MS.gene012725.t1 MTR_2g029910 43.182 308 161 8 42 337 27 332 7.46e-75 234
MS.gene012725.t1 MTR_3g092990 42.053 302 165 5 45 337 26 326 1.88e-74 233
MS.gene012725.t1 MTR_4g122640 41.860 301 155 8 50 337 43 336 6.44e-74 232
MS.gene012725.t1 MTR_8g075100 43.522 301 155 5 45 337 26 319 1.96e-73 230
MS.gene012725.t1 MTR_4g029200 39.815 324 176 7 25 337 23 338 3.41e-73 230
MS.gene012725.t1 MTR_4g127670 42.193 301 165 5 45 337 24 323 5.97e-73 229
MS.gene012725.t1 MTR_7g072510 41.118 304 163 6 42 337 17 312 6.20e-73 228
MS.gene012725.t1 MTR_4g083710 40.260 308 165 8 42 337 24 324 8.98e-73 228
MS.gene012725.t1 MTR_4g087965 39.650 343 181 8 6 334 13 343 1.75e-72 228
MS.gene012725.t1 MTR_6g027440 42.157 306 168 5 37 337 13 314 3.78e-72 226
MS.gene012725.t1 MTR_5g014100 44.516 310 153 8 44 337 25 331 8.29e-72 226
MS.gene012725.t1 MTR_4g046713 40.453 309 175 5 37 337 19 326 1.07e-71 226
MS.gene012725.t1 MTR_5g074970 40.328 305 162 6 45 337 30 326 2.07e-71 225
MS.gene012725.t1 MTR_1g038680 40.924 303 166 6 47 337 31 332 3.52e-71 224
MS.gene012725.t1 MTR_2g040000 41.528 301 160 7 50 337 34 331 4.51e-71 224
MS.gene012725.t1 MTR_3g466200 40.064 312 168 6 37 337 17 320 5.37e-71 224
MS.gene012725.t1 MTR_1g101830 40.397 302 171 3 42 337 24 322 3.69e-70 221
MS.gene012725.t1 MTR_2g084080 40.203 296 161 5 50 337 30 317 5.95e-70 221
MS.gene012725.t1 MTR_7g086820 40.656 305 173 5 38 338 13 313 6.24e-70 221
MS.gene012725.t1 MTR_4g125940 40.264 303 170 6 45 337 28 329 7.10e-70 221
MS.gene012725.t1 MTR_7g107520 42.712 295 158 6 50 337 30 320 7.40e-70 221
MS.gene012725.t1 MTR_1g086490 42.173 313 159 9 45 337 30 340 1.21e-69 221
MS.gene012725.t1 MTR_4g074995 39.088 307 157 7 42 337 21 308 1.48e-69 219
MS.gene012725.t1 MTR_5g016010 38.961 308 176 6 40 336 22 328 1.93e-69 220
MS.gene012725.t1 MTR_4g030890 41.275 298 163 7 48 337 103 396 2.90e-69 222
MS.gene012725.t1 MTR_5g022870 41.333 300 163 5 45 337 23 316 3.81e-69 219
MS.gene012725.t1 MTR_1g009750 41.254 303 167 6 45 337 27 328 4.82e-69 219
MS.gene012725.t1 MTR_2g084090 39.057 297 164 5 50 337 30 318 2.13e-68 217
MS.gene012725.t1 MTR_5g049280 38.658 313 178 6 38 337 26 337 2.58e-68 217
MS.gene012725.t1 MTR_1g025980 41.000 300 163 5 45 336 24 317 1.58e-67 215
MS.gene012725.t1 MTR_1g086320 42.157 306 162 8 45 337 30 333 1.97e-67 215
MS.gene012725.t1 MTR_4g029170 40.264 303 163 7 45 337 27 321 4.45e-67 214
MS.gene012725.t1 MTR_3g072190 41.528 301 160 6 45 337 26 318 5.52e-67 213
MS.gene012725.t1 MTR_3g094650 39.404 302 165 6 42 333 25 318 9.04e-67 213
MS.gene012725.t1 MTR_2g084110 39.145 304 169 5 42 337 22 317 1.35e-66 212
MS.gene012725.t1 MTR_1g077000 38.176 296 173 3 45 337 39 327 1.75e-66 212
MS.gene012725.t1 MTR_5g083860 39.216 306 168 6 42 337 28 325 3.29e-66 211
MS.gene012725.t1 MTR_2g029830 43.798 258 134 6 90 337 5 261 4.33e-66 210
MS.gene012725.t1 MTR_5g074710 40.952 315 164 11 37 338 17 322 5.62e-66 211
MS.gene012725.t1 MTR_7g072480 38.511 309 174 6 37 337 16 316 6.01e-66 211
MS.gene012725.t1 MTR_2g067440 36.890 328 170 6 45 336 60 386 6.49e-66 213
MS.gene012725.t1 MTR_4g029180 39.799 299 162 7 49 337 31 321 8.34e-66 210
MS.gene012725.t1 MTR_4g029190 38.838 327 177 10 25 337 23 340 1.05e-65 211
MS.gene012725.t1 MTR_2g084010 39.933 298 160 8 50 337 30 318 2.29e-65 209
MS.gene012725.t1 MTR_8g062780 38.907 311 179 6 37 337 15 324 5.68e-65 208
MS.gene012725.t1 MTR_4g125940 41.758 273 148 6 75 337 3 274 1.14e-64 206
MS.gene012725.t1 MTR_5g074760 40.635 315 165 11 37 338 17 322 1.78e-64 207
MS.gene012725.t1 MTR_1g090760 37.459 307 180 6 43 338 26 331 2.40e-64 207
MS.gene012725.t1 MTR_7g086870 41.137 299 161 6 45 337 22 311 3.17e-64 206
MS.gene012725.t1 MTR_2g084020 38.384 297 166 7 50 337 30 318 8.90e-64 205
MS.gene012725.t1 MTR_3g094670 38.436 307 171 5 37 333 20 318 2.77e-63 204
MS.gene012725.t1 MTR_3g092990 39.735 302 161 6 45 337 26 315 3.15e-63 204
MS.gene012725.t1 MTR_2g099175 39.088 307 176 6 41 338 32 336 6.81e-63 203
MS.gene012725.t1 MTR_7g026990 39.865 296 163 6 49 337 35 322 9.92e-63 202
MS.gene012725.t1 MTR_2g084000 39.088 307 166 7 42 337 23 319 9.96e-63 202
MS.gene012725.t1 MTR_5g074860 39.103 312 168 10 38 336 22 324 1.51e-62 202
MS.gene012725.t1 MTR_5g074740 39.683 315 168 11 37 338 17 322 1.61e-62 202
MS.gene012725.t1 MTR_6g043240 38.487 304 174 6 39 337 36 331 2.06e-62 202
MS.gene012725.t1 MTR_2g078610 35.866 329 171 6 45 334 76 403 2.25e-62 204
MS.gene012725.t1 MTR_4g074990 37.785 307 158 8 42 337 21 305 2.45e-62 201
MS.gene012725.t1 MTR_0155s0040 34.564 298 185 3 43 337 25 315 3.06e-62 201
MS.gene012725.t1 MTR_6g043280 34.795 342 205 6 2 337 3 332 7.69e-62 201
MS.gene012725.t1 MTR_4g095450 38.742 302 168 6 43 333 25 320 1.29e-61 199
MS.gene012725.t1 MTR_3g466180 40.777 309 167 6 37 337 23 323 1.67e-61 199
MS.gene012725.t1 MTR_2g077990 35.866 329 171 6 45 334 76 403 3.31e-61 201
MS.gene012725.t1 MTR_3g094630 39.550 311 170 6 37 337 20 322 3.60e-61 198
MS.gene012725.t1 MTR_2g008160 38.361 305 177 5 42 337 21 323 5.00e-61 198
MS.gene012725.t1 MTR_1g066380 37.662 308 166 6 45 337 27 323 1.55e-60 197
MS.gene012725.t1 MTR_3g467600 35.429 350 187 10 1 337 1 324 2.01e-60 196
MS.gene012725.t1 MTR_0286s0010 39.414 307 172 9 42 337 31 334 2.62e-60 197
MS.gene012725.t1 MTR_6g008075 39.414 307 172 9 42 337 31 334 2.62e-60 197
MS.gene012725.t1 MTR_1g066710 37.255 306 176 6 42 337 24 323 2.63e-59 194
MS.gene012725.t1 MTR_2g008730 36.577 298 157 4 47 337 29 301 3.44e-59 192
MS.gene012725.t1 MTR_6g043460 39.274 303 168 7 39 333 30 324 9.63e-59 193
MS.gene012725.t1 MTR_1g066640 36.013 311 173 6 42 337 24 323 2.60e-58 191
MS.gene012725.t1 MTR_1g115900 38.361 305 170 7 43 337 25 321 7.03e-58 190
MS.gene012725.t1 MTR_2g078280 35.962 317 164 5 45 322 76 392 1.01e-57 192
MS.gene012725.t1 MTR_0147s0010 36.278 317 167 7 44 336 76 381 3.52e-57 190
MS.gene012725.t1 MTR_1g009750 37.793 299 166 6 45 337 27 311 4.55e-57 187
MS.gene012725.t1 MTR_7g029030 38.361 305 173 6 42 337 22 320 7.78e-57 187
MS.gene012725.t1 MTR_4g132490 34.437 302 186 5 45 337 29 327 1.61e-56 187
MS.gene012725.t1 MTR_4g074980 36.213 301 159 8 42 337 22 294 9.13e-54 178
MS.gene012725.t1 MTR_5g033470 33.333 327 202 6 25 337 53 377 3.70e-53 179
MS.gene012725.t1 MTR_1g066680 34.740 308 180 7 42 337 24 322 8.23e-53 177
MS.gene012725.t1 MTR_4g074980 39.496 238 127 6 42 268 22 253 1.11e-52 174
MS.gene012725.t1 MTR_3g072190 40.856 257 136 6 89 337 3 251 1.48e-52 174
MS.gene012725.t1 MTR_4g132110 35.738 305 178 6 45 338 32 329 1.44e-51 174
MS.gene012725.t1 MTR_2g067450 35.484 310 171 9 45 336 11 309 1.04e-50 171
MS.gene012725.t1 MTR_4g132110 35.161 310 178 7 45 338 32 334 2.90e-49 168
MS.gene012725.t1 MTR_3g105790 36.424 302 183 6 43 337 23 322 5.16e-49 167
MS.gene012725.t1 MTR_1g066380 36.604 265 142 6 88 337 2 255 8.90e-48 162
MS.gene012725.t1 MTR_2g008160 34.098 305 155 5 42 337 21 288 1.52e-44 154
MS.gene012725.t1 MTR_2g029880 43.684 190 96 4 151 337 7 188 1.93e-44 152
MS.gene012725.t1 MTR_5g074860 33.333 312 147 10 38 336 22 285 2.45e-43 151
MS.gene012725.t1 MTR_2g008160 45.181 166 90 1 45 209 24 189 2.61e-41 143
MS.gene012725.t1 MTR_5g074700 37.447 235 119 10 111 338 2 215 3.25e-36 130
MS.gene012725.t1 MTR_7g072490 35.498 231 88 5 91 317 2 175 6.87e-35 127
MS.gene012725.t1 MTR_3g105790 35.887 248 150 6 97 337 1 246 7.00e-33 122
MS.gene012725.t1 MTR_2g078560 33.186 226 115 6 146 336 95 319 2.81e-30 117
MS.gene012725.t1 MTR_2g077980 29.304 273 149 7 104 334 11 281 1.55e-29 114
MS.gene012725.t1 MTR_3g072260 48.077 104 50 2 50 149 31 134 2.91e-27 104
MS.gene012725.t1 MTR_3g072210 35.938 192 109 6 152 337 55 238 1.15e-23 97.8
MS.gene012725.t1 MTR_4g114220 48.235 85 38 1 64 148 22 100 4.48e-21 88.2
MS.gene012725.t1 MTR_6g048160 55.224 67 30 0 84 150 22 88 7.16e-21 86.3
MS.gene012725.t1 MTR_7g086790 34.969 163 85 5 92 251 17 161 3.19e-20 87.4
MS.gene012725.t1 MTR_1g089005 38.655 119 64 2 44 153 14 132 6.17e-20 85.5
MS.gene012725.t1 MTR_5g058120 36.054 147 81 3 189 333 20 155 4.94e-19 85.5
MS.gene012725.t1 MTR_7g086810 37.607 117 51 1 43 159 4 98 3.12e-17 80.1
MS.gene012725.t1 MTR_7g086785 35.507 138 80 3 90 223 3 135 7.01e-16 73.9
MS.gene012725.t1 MTR_3g462850 32.394 142 87 4 204 337 9 149 4.93e-14 68.9
MS.gene012725.t1 MTR_1g098320 41.250 80 46 1 259 338 47 125 1.46e-13 67.4
MS.gene012725.t1 MTR_5g074770 38.889 90 51 3 249 336 21 108 2.38e-12 63.2
MS.gene012725.t1 MTR_4g012865 42.105 76 38 2 44 113 76 151 1.62e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene012725.t1 AT1G30870 50.667 300 146 2 40 337 46 345 9.49e-107 316
MS.gene012725.t1 AT5G66390 46.128 297 150 5 50 337 38 333 8.20e-87 265
MS.gene012725.t1 AT4G36430 44.482 299 156 6 48 337 33 330 2.76e-84 258
MS.gene012725.t1 AT2G18150 44.147 299 157 5 48 337 39 336 2.74e-83 256
MS.gene012725.t1 AT2G38390 45.603 307 155 6 42 337 28 333 5.66e-83 255
MS.gene012725.t1 AT5G64120 43.377 302 166 3 39 337 29 328 2.97e-81 250
MS.gene012725.t1 AT3G03670 41.234 308 173 4 37 337 15 321 2.35e-80 248
MS.gene012725.t1 AT2G38380 45.603 307 155 6 42 337 28 333 5.95e-80 248
MS.gene012725.t1 AT1G05240 43.709 302 161 5 44 337 25 325 9.55e-80 246
MS.gene012725.t1 AT1G05250 43.709 302 161 5 44 337 25 325 9.55e-80 246
MS.gene012725.t1 AT2G41480 41.722 302 167 3 44 337 28 328 2.36e-79 245
MS.gene012725.t1 AT3G50990 44.013 309 153 7 43 337 39 341 2.38e-79 246
MS.gene012725.t1 AT3G01190 44.295 298 159 5 45 337 26 321 3.10e-79 245
MS.gene012725.t1 AT5G17820 41.196 301 174 3 37 337 16 313 3.61e-79 244
MS.gene012725.t1 AT2G18140 43.771 297 157 5 50 337 40 335 4.72e-79 245
MS.gene012725.t1 AT5G06730 42.122 311 169 6 37 337 25 334 7.78e-79 245
MS.gene012725.t1 AT5G17820 41.196 301 174 3 37 337 69 366 5.25e-78 243
MS.gene012725.t1 AT5G15180 39.941 338 181 7 6 337 8 329 8.45e-78 241
MS.gene012725.t1 AT3G32980 44.805 308 157 6 42 337 28 334 1.01e-77 242
MS.gene012725.t1 AT1G05260 43.042 309 167 5 37 337 18 325 1.13e-77 241
MS.gene012725.t1 AT3G49110 42.857 308 163 6 42 337 30 336 2.26e-77 241
MS.gene012725.t1 AT4G11290 45.098 306 157 6 42 337 22 326 3.22e-77 240
MS.gene012725.t1 AT1G49570 41.077 297 163 5 50 335 53 348 5.26e-77 240
MS.gene012725.t1 AT4G08780 43.322 307 161 7 43 337 22 327 6.06e-77 240
MS.gene012725.t1 AT3G49120 43.322 307 161 7 43 337 30 335 8.76e-77 239
MS.gene012725.t1 AT4G08770 43.322 307 161 7 43 337 22 327 9.43e-77 239
MS.gene012725.t1 AT1G44970 44.295 298 155 6 50 337 50 346 1.58e-76 239
MS.gene012725.t1 AT2G39040 43.366 309 161 7 42 337 43 350 7.03e-76 237
MS.gene012725.t1 AT3G21770 43.464 306 164 6 37 334 21 325 8.10e-76 236
MS.gene012725.t1 AT5G06720 39.067 343 181 8 5 337 9 333 3.40e-75 235
MS.gene012725.t1 AT5G64100 43.051 295 162 5 47 337 39 331 9.37e-75 234
MS.gene012725.t1 AT5G39580 42.712 295 163 4 47 337 27 319 2.22e-74 232
MS.gene012725.t1 AT2G22420 41.722 302 154 6 50 338 28 320 1.06e-73 231
MS.gene012725.t1 AT5G64110 41.613 310 169 6 34 337 27 330 1.27e-73 231
MS.gene012725.t1 AT5G51890 41.100 309 170 4 37 337 18 322 2.22e-73 230
MS.gene012725.t1 AT1G68850 39.617 313 174 6 39 337 24 335 9.92e-73 229
MS.gene012725.t1 AT4G25980 41.118 304 169 5 43 337 24 326 3.93e-72 227
MS.gene012725.t1 AT4G16270 40.789 304 166 7 44 337 49 348 8.08e-72 227
MS.gene012725.t1 AT5G19890 39.803 304 172 4 42 337 27 327 8.98e-72 226
MS.gene012725.t1 AT5G19880 41.558 308 166 7 43 337 23 329 1.54e-71 225
MS.gene012725.t1 AT2G34060 41.108 343 189 6 3 333 1 342 7.41e-71 224
MS.gene012725.t1 AT1G14550 40.196 306 166 7 42 337 23 321 8.79e-70 221
MS.gene012725.t1 AT2G43480 38.462 338 195 7 10 337 1 335 2.08e-69 220
MS.gene012725.t1 AT4G30170 40.264 303 171 6 43 337 25 325 6.12e-69 219
MS.gene012725.t1 AT4G37520 39.869 306 172 6 43 337 25 329 6.31e-69 219
MS.gene012725.t1 AT3G49960 39.739 307 171 6 43 337 25 329 1.66e-68 218
MS.gene012725.t1 AT5G24070 40.514 311 170 7 38 337 29 335 1.31e-67 216
MS.gene012725.t1 AT2G18980 40.924 303 169 6 43 337 23 323 1.78e-67 215
MS.gene012725.t1 AT4G17690 39.871 311 169 7 39 339 22 324 3.95e-67 214
MS.gene012725.t1 AT2G35380 38.329 347 171 10 11 337 12 335 4.06e-67 214
MS.gene012725.t1 AT4G37520 39.542 306 170 7 43 337 25 326 4.95e-67 214
MS.gene012725.t1 AT4G37530 39.465 299 169 5 50 337 32 329 5.22e-67 214
MS.gene012725.t1 AT5G22410 39.482 309 166 7 43 333 16 321 6.23e-67 214
MS.gene012725.t1 AT5G05340 37.582 306 173 5 42 337 27 324 2.37e-66 212
MS.gene012725.t1 AT5G42180 37.318 343 181 6 1 336 1 316 8.85e-66 210
MS.gene012725.t1 AT5G47000 38.462 312 177 6 36 337 24 330 9.18e-66 211
MS.gene012725.t1 AT1G77100 39.344 305 168 6 43 337 22 319 3.10e-65 209
MS.gene012725.t1 AT1G71695 36.232 345 203 7 2 337 3 339 4.63e-65 209
MS.gene012725.t1 AT5G14130 37.987 308 183 6 37 337 24 330 2.73e-64 207
MS.gene012725.t1 AT5G14130 37.987 308 183 6 37 337 65 371 1.43e-63 206
MS.gene012725.t1 AT5G67400 38.235 306 177 5 43 337 25 329 3.18e-63 204
MS.gene012725.t1 AT4G33420 38.176 296 173 3 45 337 37 325 4.09e-63 204
MS.gene012725.t1 AT4G33420 38.176 296 173 3 45 337 84 372 1.41e-62 204
MS.gene012725.t1 AT1G14540 36.721 305 177 7 42 337 18 315 2.61e-62 201
MS.gene012725.t1 AT4G33870 34.925 335 173 6 43 334 66 398 1.47e-61 202
MS.gene012725.t1 AT4G26010 38.235 306 174 7 37 337 14 309 1.07e-60 197
MS.gene012725.t1 AT4G26010 38.235 306 174 7 37 337 42 337 1.58e-60 197
MS.gene012725.t1 AT5G58390 36.482 307 176 5 42 337 18 316 6.51e-60 195
MS.gene012725.t1 AT2G24800 39.016 305 172 6 43 337 29 329 1.10e-59 195
MS.gene012725.t1 AT4G31760 38.511 309 177 6 38 337 22 326 7.67e-58 190
MS.gene012725.t1 AT5G40150 37.908 306 174 7 42 337 29 328 1.70e-57 189
MS.gene012725.t1 AT5G58400 35.831 307 178 6 42 337 27 325 6.14e-56 185
MS.gene012725.t1 AT3G28200 36.928 306 176 7 42 337 18 316 1.75e-55 184
MS.gene012725.t1 AT4G37530 38.645 251 143 4 50 289 32 282 2.49e-55 182
MS.gene012725.t1 AT1G34510 36.601 306 179 6 37 337 14 309 3.89e-54 180
MS.gene012725.t1 AT1G24110 37.338 308 181 6 42 339 19 324 2.15e-53 179
MS.gene012725.t1 AT2G37130 36.184 304 177 7 45 337 30 327 1.18e-51 174
MS.gene012725.t1 AT2G37130 36.093 302 176 7 47 337 1 296 2.49e-51 172
MS.gene012725.t1 AT4G21960 35.831 307 181 5 42 338 28 328 7.62e-51 172
MS.gene012725.t1 AT3G17070 34.528 307 182 7 45 337 38 339 2.18e-49 168
MS.gene012725.t1 AT2G35380 39.918 243 123 6 111 337 12 247 5.31e-48 162
MS.gene012725.t1 AT4G25980 46.951 164 86 1 45 207 71 234 1.03e-46 160
MS.gene012725.t1 AT5G39580 45.614 171 93 0 47 217 27 197 5.37e-46 156
MS.gene012725.t1 AT2G24800 43.114 167 90 2 43 206 29 193 1.37e-37 135
MS.gene012725.t1 AT3G17070 33.716 261 154 7 91 337 21 276 2.57e-35 130
MS.gene012725.t1 AT4G08390 27.273 275 146 10 77 327 125 369 1.16e-12 68.6
MS.gene012725.t1 AT4G08390 27.273 275 146 10 77 327 125 369 1.16e-12 68.6
MS.gene012725.t1 AT4G08390 27.273 275 146 10 77 327 125 369 1.16e-12 68.6
MS.gene012725.t1 AT4G08390 27.273 275 146 10 77 327 124 368 1.18e-12 68.6

Find 68 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTAAGGTTTGTGTAAT+AGG 0.182163 8.1:+989909 None:intergenic
TGGAACCAAATTGGCTTCTT+TGG 0.214684 8.1:+990197 None:intergenic
AAATGGTCCTCCTGCTAAAA+TGG 0.257858 8.1:+990263 None:intergenic
AATAGCCAAAGAAGCCAATT+TGG 0.262460 8.1:-990202 MS.gene012725:CDS
GGCTTCAGGAGGTGGTAATA+AGG 0.286886 8.1:+990816 None:intergenic
GTTGAGGAAAAGATGTAAAA+AGG 0.309627 8.1:-989983 MS.gene012725:CDS
CTTGATTTGGTTACTCTCTC+AGG 0.311030 8.1:-990114 MS.gene012725:CDS
CTTGTTATTCTGTTATGAAT+AGG 0.321414 8.1:-990068 MS.gene012725:CDS
CTTTGATTTCATCAATCAAT+TGG 0.323783 8.1:+990358 None:intergenic
ACAATCCAGCCTTCCTCTTA+AGG 0.324593 8.1:+989896 None:intergenic
ATGTCCTTGTGGAACCAAAT+TGG 0.333909 8.1:+990188 None:intergenic
GAAAACATCACAGGTTTGAT+TGG 0.345348 8.1:-990165 MS.gene012725:CDS
TCAGCACATGATACTGTTCT+TGG 0.346220 8.1:+990315 None:intergenic
AGGACTTGACATGCTTGATT+TGG 0.346446 8.1:-990127 MS.gene012725:CDS
ACTCTGATTTCACCTTCATT+TGG 0.351387 8.1:+989736 None:intergenic
TGATGGATGGGGCCAAGGTG+GGG 0.369478 8.1:+990707 None:intergenic
GCTCAAAGATGATCACAAAA+AGG 0.369930 8.1:+990896 None:intergenic
AATAGGATTTACAATTTCAA+TGG 0.371608 8.1:-990051 MS.gene012725:CDS
CTCTCAGGTTCACACACAAT+TGG 0.380035 8.1:-990099 MS.gene012725:CDS
ATTTACAATTTCAATGGAAC+TGG 0.385176 8.1:-990045 MS.gene012725:CDS
CCGAATGGAACTTCCCAAAA+TGG 0.397287 8.1:+990246 None:intergenic
CCTGAAGCCTTGCTTTCCAT+TGG 0.398050 8.1:-990802 MS.gene012725:CDS
GAGATAATGCCTTCAGCATC+AGG 0.407328 8.1:+990760 None:intergenic
ATGATGGATGGGGCCAAGGT+GGG 0.408607 8.1:+990706 None:intergenic
CCTATTACACAAACCTTAAG+AGG 0.412399 8.1:-989909 MS.gene012725:CDS
GAGCTAAGCACCAATGTCTA+TGG 0.426739 8.1:-990877 MS.gene012725:CDS
GATGATGGATGGGGCCAAGG+TGG 0.439097 8.1:+990705 None:intergenic
GCTTCAGGAGGTGGTAATAA+GGG 0.450368 8.1:+990817 None:intergenic
CCAATGGAAAGCAAGGCTTC+AGG 0.453917 8.1:+990802 None:intergenic
GCGGATGATGGATGGGGCCA+AGG 0.455184 8.1:+990702 None:intergenic
TTACTCTAACGGCACAATCA+TGG 0.460833 8.1:+990671 None:intergenic
CAGTTCTCTCACTTCCTACA+TGG 0.468363 8.1:+990409 None:intergenic
CTGTGTCAATGGTGAAGCTT+GGG 0.470698 8.1:-989780 MS.gene012725:CDS
ACAAACCTTAAGAGGAAGGC+TGG 0.477732 8.1:-989901 MS.gene012725:CDS
TCTCAGGTTCACACACAATT+GGG 0.482097 8.1:-990098 MS.gene012725:CDS
TAGTCAGTTTGCTGTGTCAA+TGG 0.495927 8.1:-989791 MS.gene012725:CDS
GTTCCATTCGGTCGAAAAGA+CGG 0.504042 8.1:-990234 MS.gene012725:CDS
GTTGCAAATAAATCCACAAA+AGG 0.515951 8.1:+989832 None:intergenic
ATGGAAATGCAAGCGGATGA+TGG 0.516652 8.1:+990690 None:intergenic
AAATGCAAGCGGATGATGGA+TGG 0.518541 8.1:+990694 None:intergenic
GAAAGCAAGGCTTCAGGAGG+TGG 0.522486 8.1:+990808 None:intergenic
CAGCATCAGGACATGTTGAA+TGG 0.523120 8.1:+990773 None:intergenic
AATGCAAGCGGATGATGGAT+GGG 0.526514 8.1:+990695 None:intergenic
TAGGTTGTGTCAAAAGTCCT+TGG 0.531220 8.1:+989928 None:intergenic
GCTGTGTCAATGGTGAAGCT+TGG 0.532361 8.1:-989781 MS.gene012725:CDS
TCTATTACTTGAAGATGTTG+AGG 0.548402 8.1:-989999 MS.gene012725:CDS
AATCAATTGGAACCCTCTCA+AGG 0.559103 8.1:+990371 None:intergenic
TTTATAATGCAGGGATGTGA+TGG 0.559245 8.1:-990447 MS.gene012725:intron
TTTGCGAGTAAAACCTTGAG+AGG 0.562401 8.1:-990384 MS.gene012725:CDS
TATGTGATTAATTACTCTAA+CGG 0.565133 8.1:+990660 None:intergenic
AAAGGAACAATGATAGGCAG+TGG 0.570535 8.1:+990914 None:intergenic
ATGCAAGCGGATGATGGATG+GGG 0.570928 8.1:+990696 None:intergenic
AGTAATAGATGTTAAGTGAA+GGG 0.577076 8.1:+990013 None:intergenic
TCCTTGGTGTTATAACATCA+AGG 0.582931 8.1:+989944 None:intergenic
GGTTAAGAAGGACCCCACCT+TGG 0.591034 8.1:-990719 MS.gene012725:CDS
TAGATGTTAAGTGAAGGGTC+AGG 0.595760 8.1:+990018 None:intergenic
AAGTAATAGATGTTAAGTGA+AGG 0.596172 8.1:+990012 None:intergenic
TGTTGAATGGTAGTGACCAA+TGG 0.605232 8.1:+990786 None:intergenic
TTACACAAACCTTAAGAGGA+AGG 0.605391 8.1:-989905 MS.gene012725:CDS
TCAACATGTCCTGATGCTGA+AGG 0.605951 8.1:-990769 MS.gene012725:CDS
GTAGTGACCAATGGAAAGCA+AGG 0.614327 8.1:+990795 None:intergenic
CACAATCATGGAAATGCAAG+CGG 0.619430 8.1:+990683 None:intergenic
CAAGGACATGAAAACATCAC+AGG 0.621625 8.1:-990174 MS.gene012725:CDS
TTGCGAGTAAAACCTTGAGA+GGG 0.625287 8.1:-990383 MS.gene012725:CDS
ATGGAAAGCAAGGCTTCAGG+AGG 0.657267 8.1:+990805 None:intergenic
ACCTTGATGTTATAACACCA+AGG 0.663108 8.1:-989945 MS.gene012725:CDS
GAAGCCAATTTGGTTCCACA+AGG 0.666112 8.1:-990192 MS.gene012725:CDS
TGATGAGAGACCATAGACAT+TGG 0.725415 8.1:+990867 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTAAAAAAAATTATTCT+AGG + chr8.1:990033-990052 None:intergenic 10.0%
!!! TTAAAGTTTACATTTGTTTT+TGG - chr8.1:990046-990065 MS.gene012725:CDS 15.0%
!! AATAGGATTTACAATTTCAA+TGG - chr8.1:990579-990598 MS.gene012725:intron 20.0%
!! TATGTGATTAATTACTCTAA+CGG + chr8.1:989973-989992 None:intergenic 20.0%
!!! TCTTATTGATTTATAATGCA+GGG - chr8.1:990174-990193 MS.gene012725:CDS 20.0%
!!! TTCTTATTGATTTATAATGC+AGG - chr8.1:990173-990192 MS.gene012725:CDS 20.0%
! AACTGACTAGTAAAAACAAA+AGG + chr8.1:990828-990847 None:intergenic 25.0%
! AAGTAATAGATGTTAAGTGA+AGG + chr8.1:990621-990640 None:intergenic 25.0%
! AGTAATAGATGTTAAGTGAA+GGG + chr8.1:990620-990639 None:intergenic 25.0%
! ATGTAAAAAGGATTTGGATT+TGG - chr8.1:990659-990678 MS.gene012725:intron 25.0%
! ATTTACAATTTCAATGGAAC+TGG - chr8.1:990585-990604 MS.gene012725:intron 25.0%
! GAAAAGATGTAAAAAGGATT+TGG - chr8.1:990653-990672 MS.gene012725:intron 25.0%
!! CTTTGATTTCATCAATCAAT+TGG + chr8.1:990275-990294 None:intergenic 25.0%
!!! ATTGGATTTTTTCAAGAAAG+AGG - chr8.1:990483-990502 MS.gene012725:intron 25.0%
!!! CTTGTTATTCTGTTATGAAT+AGG - chr8.1:990562-990581 MS.gene012725:intron 25.0%
GTTGAGGAAAAGATGTAAAA+AGG - chr8.1:990647-990666 MS.gene012725:intron 30.0%
GTTGCAAATAAATCCACAAA+AGG + chr8.1:990801-990820 None:intergenic 30.0%
TCACAAAAAGGAACAATGAT+AGG + chr8.1:989725-989744 None:intergenic 30.0%
TCTATTACTTGAAGATGTTG+AGG - chr8.1:990631-990650 MS.gene012725:intron 30.0%
! CTCACAAAAAGTTTTTGCTT+GGG - chr8.1:989890-989909 MS.gene012725:CDS 30.0%
! TAAAAGAACATCTCCTTTTG+TGG - chr8.1:990785-990804 MS.gene012725:CDS 30.0%
! TCAATTTTGCTTAACCATGT+AGG - chr8.1:990207-990226 MS.gene012725:CDS 30.0%
! TCTCACAAAAAGTTTTTGCT+TGG - chr8.1:989889-989908 MS.gene012725:CDS 30.0%
!!! AAGGGATTCGATGATTTTTT+AGG + chr8.1:989798-989817 None:intergenic 30.0%
AATAGCCAAAGAAGCCAATT+TGG - chr8.1:990428-990447 MS.gene012725:CDS 35.0%
ACCTTGATGTTATAACACCA+AGG - chr8.1:990685-990704 MS.gene012725:CDS 35.0%
ACTCTGATTTCACCTTCATT+TGG + chr8.1:990897-990916 None:intergenic 35.0%
CCTATTACACAAACCTTAAG+AGG - chr8.1:990721-990740 MS.gene012725:CDS 35.0%
CCTCTTAAGGTTTGTGTAAT+AGG + chr8.1:990724-990743 None:intergenic 35.0%
GAAAACATCACAGGTTTGAT+TGG - chr8.1:990465-990484 MS.gene012725:intron 35.0%
GCTCAAAGATGATCACAAAA+AGG + chr8.1:989737-989756 None:intergenic 35.0%
TTACACAAACCTTAAGAGGA+AGG - chr8.1:990725-990744 MS.gene012725:CDS 35.0%
TTTATAATGCAGGGATGTGA+TGG - chr8.1:990183-990202 MS.gene012725:CDS 35.0%
! AGTTTTTGCTTGGGTTAAGA+AGG - chr8.1:989899-989918 MS.gene012725:CDS 35.0%
!! TCCTTGGTGTTATAACATCA+AGG + chr8.1:990689-990708 None:intergenic 35.0%
!!! GGAATGTTCAAGTTTTGACT+AGG - chr8.1:990871-990890 MS.gene012725:CDS 35.0%
AAAGGAACAATGATAGGCAG+TGG + chr8.1:989719-989738 None:intergenic 40.0%
AAATGGTCCTCCTGCTAAAA+TGG + chr8.1:990370-990389 None:intergenic 40.0%
AATCAATTGGAACCCTCTCA+AGG + chr8.1:990262-990281 None:intergenic 40.0%
AGGACTTGACATGCTTGATT+TGG - chr8.1:990503-990522 MS.gene012725:intron 40.0%
ATGTCCTTGTGGAACCAAAT+TGG + chr8.1:990445-990464 None:intergenic 40.0%
CAAGGACATGAAAACATCAC+AGG - chr8.1:990456-990475 MS.gene012725:intron 40.0%
CACAATCATGGAAATGCAAG+CGG + chr8.1:989950-989969 None:intergenic 40.0%
TAGATGTTAAGTGAAGGGTC+AGG + chr8.1:990615-990634 None:intergenic 40.0%
TAGGTTGTGTCAAAAGTCCT+TGG + chr8.1:990705-990724 None:intergenic 40.0%
TCAGCACATGATACTGTTCT+TGG + chr8.1:990318-990337 None:intergenic 40.0%
TCTCAGGTTCACACACAATT+GGG - chr8.1:990532-990551 MS.gene012725:intron 40.0%
TGATGAGAGACCATAGACAT+TGG + chr8.1:989766-989785 None:intergenic 40.0%
TTACTCTAACGGCACAATCA+TGG + chr8.1:989962-989981 None:intergenic 40.0%
TTGCGAGTAAAACCTTGAGA+GGG - chr8.1:990247-990266 MS.gene012725:CDS 40.0%
TTTGCGAGTAAAACCTTGAG+AGG - chr8.1:990246-990265 MS.gene012725:CDS 40.0%
! GTGATGTTTTCATGTCCTTG+TGG + chr8.1:990456-990475 None:intergenic 40.0%
! TGGAACCAAATTGGCTTCTT+TGG + chr8.1:990436-990455 None:intergenic 40.0%
! TGTTGAATGGTAGTGACCAA+TGG + chr8.1:989847-989866 None:intergenic 40.0%
! TTTAGCAGGAGGACCATTTT+GGG - chr8.1:990371-990390 MS.gene012725:CDS 40.0%
! TTTTAGCAGGAGGACCATTT+TGG - chr8.1:990370-990389 MS.gene012725:CDS 40.0%
!! AGAGATGCAACCATTTTAGC+AGG - chr8.1:990357-990376 MS.gene012725:CDS 40.0%
!! CCATTTTGGGAAGTTCCATT+CGG - chr8.1:990384-990403 MS.gene012725:CDS 40.0%
!! CTTGATTTGGTTACTCTCTC+AGG - chr8.1:990516-990535 MS.gene012725:intron 40.0%
!! TAGTCAGTTTGCTGTGTCAA+TGG - chr8.1:990839-990858 MS.gene012725:CDS 40.0%
!!! GTTTTGACTAGGCCAAATGA+AGG - chr8.1:990882-990901 MS.gene012725:CDS 40.0%
ACAAACCTTAAGAGGAAGGC+TGG - chr8.1:990729-990748 MS.gene012725:CDS 45.0%
ACAATCCAGCCTTCCTCTTA+AGG + chr8.1:990737-990756 None:intergenic 45.0%
ATGGAAATGCAAGCGGATGA+TGG + chr8.1:989943-989962 None:intergenic 45.0%
CAGCATCAGGACATGTTGAA+TGG + chr8.1:989860-989879 None:intergenic 45.0%
CAGTTCTCTCACTTCCTACA+TGG + chr8.1:990224-990243 None:intergenic 45.0%
CCGAATGGAACTTCCCAAAA+TGG + chr8.1:990387-990406 None:intergenic 45.0%
CTCTCAGGTTCACACACAAT+TGG - chr8.1:990531-990550 MS.gene012725:intron 45.0%
CTGTGTCAATGGTGAAGCTT+GGG - chr8.1:990850-990869 MS.gene012725:CDS 45.0%
GAGATAATGCCTTCAGCATC+AGG + chr8.1:989873-989892 None:intergenic 45.0%
GAGCTAAGCACCAATGTCTA+TGG - chr8.1:989753-989772 MS.gene012725:CDS 45.0%
GCTTCAGGAGGTGGTAATAA+GGG + chr8.1:989816-989835 None:intergenic 45.0%
GTAGTGACCAATGGAAAGCA+AGG + chr8.1:989838-989857 None:intergenic 45.0%
GTTCCATTCGGTCGAAAAGA+CGG - chr8.1:990396-990415 MS.gene012725:CDS 45.0%
TCAACATGTCCTGATGCTGA+AGG - chr8.1:989861-989880 MS.gene012725:CDS 45.0%
! GAAGCCAATTTGGTTCCACA+AGG - chr8.1:990438-990457 MS.gene012725:CDS 45.0%
!! AAATGCAAGCGGATGATGGA+TGG + chr8.1:989939-989958 None:intergenic 45.0%
!! AATGCAAGCGGATGATGGAT+GGG + chr8.1:989938-989957 None:intergenic 45.0%
!! GATGCAACCATTTTAGCAGG+AGG - chr8.1:990360-990379 MS.gene012725:CDS 45.0%
ATGGAAAGCAAGGCTTCAGG+AGG + chr8.1:989828-989847 None:intergenic 50.0%
CCAATGGAAAGCAAGGCTTC+AGG + chr8.1:989831-989850 None:intergenic 50.0%
CCTGAAGCCTTGCTTTCCAT+TGG - chr8.1:989828-989847 MS.gene012725:CDS 50.0%
GCTGTGTCAATGGTGAAGCT+TGG - chr8.1:990849-990868 MS.gene012725:CDS 50.0%
GGCTTCAGGAGGTGGTAATA+AGG + chr8.1:989817-989836 None:intergenic 50.0%
! TTGCCGTCTTTTCGACCGAA+TGG + chr8.1:990402-990421 None:intergenic 50.0%
!! ATGCAAGCGGATGATGGATG+GGG + chr8.1:989937-989956 None:intergenic 50.0%
GAAAGCAAGGCTTCAGGAGG+TGG + chr8.1:989825-989844 None:intergenic 55.0%
GGTTAAGAAGGACCCCACCT+TGG - chr8.1:989911-989930 MS.gene012725:CDS 55.0%
!! ATGATGGATGGGGCCAAGGT+GGG + chr8.1:989927-989946 None:intergenic 55.0%
! TGATGGATGGGGCCAAGGTG+GGG + chr8.1:989926-989945 None:intergenic 60.0%
!! GATGATGGATGGGGCCAAGG+TGG + chr8.1:989928-989947 None:intergenic 60.0%
!! GCGGATGATGGATGGGGCCA+AGG + chr8.1:989931-989950 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 989708 990944 989708 ID=MS.gene012725
chr8.1 mRNA 989708 990944 989708 ID=MS.gene012725.t1;Parent=MS.gene012725
chr8.1 exon 990675 990944 990675 ID=MS.gene012725.t1.exon1;Parent=MS.gene012725.t1
chr8.1 CDS 990675 990944 990675 ID=cds.MS.gene012725.t1;Parent=MS.gene012725.t1
chr8.1 exon 989708 990457 989708 ID=MS.gene012725.t1.exon2;Parent=MS.gene012725.t1
chr8.1 CDS 989708 990457 989708 ID=cds.MS.gene012725.t1;Parent=MS.gene012725.t1
Gene Sequence

>MS.gene012725

ATGAAGTTCCACTGCCTATCATTGTTCCTTTTTGTGATCATCTTTGAGCTAAGCACCAATGTCTATGGTCTCTCATCACAATTTGTGCCTAAAAAATCATCGAATCCCTTATTACCACCTCCTGAAGCCTTGCTTTCCATTGGTCACTACCATTCAACATGTCCTGATGCTGAAGGCATTATCTCACAAAAAGTTTTTGCTTGGGTTAAGAAGGACCCCACCTTGGCCCCATCCATCATCCGCTTGCATTTCCATGATTGTGCCGTTAGAGTAATTAATCACATAACTCAATCTCTTTTTAAATTTTACAAAGTTCAGTTTTCCTAGAATAATTTTTTTTAAAGTTTACATTTGTTTTTGGTCTGCACAATTATATCATATTATATTTGATATCTATAACATGTACAATATTAATTTTTAGTCTCTCAAAATAAAGACTAAAATCGATATTAGAGTGACTAATTTTTCTTATTGATTTATAATGCAGGGATGTGATGGATCAATTTTGCTTAACCATGTAGGAAGTGAGAGAACTGCTTTTGCGAGTAAAACCTTGAGAGGGTTCCAATTGATTGATGAAATCAAAGCTGAGCTAGAGAGAAGATGTCCAAGAACAGTATCATGTGCTGACATTCTCACTGCTGCTACAAGAGATGCAACCATTTTAGCAGGAGGACCATTTTGGGAAGTTCCATTCGGTCGAAAAGACGGCAAAATTTCAATAGCCAAAGAAGCCAATTTGGTTCCACAAGGACATGAAAACATCACAGGTTTGATTGGATTTTTTCAAGAAAGAGGACTTGACATGCTTGATTTGGTTACTCTCTCAGGTTCACACACAATTGGGAGAAGCACTTGTTATTCTGTTATGAATAGGATTTACAATTTCAATGGAACTGGTAAACCTGACCCTTCACTTAACATCTATTACTTGAAGATGTTGAGGAAAAGATGTAAAAAGGATTTGGATTTGGTTCACCTTGATGTTATAACACCAAGGACTTTTGACACAACCTATTACACAAACCTTAAGAGGAAGGCTGGATTGTTGTCAACAGATCAATTGTTGTTTTCAGATAAAAGAACATCTCCTTTTGTGGATTTATTTGCAACACAACCTTTTGTTTTTACTAGTCAGTTTGCTGTGTCAATGGTGAAGCTTGGGAATGTTCAAGTTTTGACTAGGCCAAATGAAGGTGAAATCAGAGTGAATTGCAATTATGTCAATCGTTTTTAA
Protein sequence

>MS.gene012725.t1

MKFHCLSLFLFVIIFELSTNVYGLSSQFVPKKSSNPLLPPPEALLSIGHYHSTCPDAEGIISQKVFAWVKKDPTLAPSIIRLHFHDCAVRGCDGSILLNHVGSERTAFASKTLRGFQLIDEIKAELERRCPRTVSCADILTAATRDATILAGGPFWEVPFGRKDGKISIAKEANLVPQGHENITGLIGFFQERGLDMLDLVTLSGSHTIGRSTCYSVMNRIYNFNGTGKPDPSLNIYYLKMLRKRCKKDLDLVHLDVITPRTFDTTYYTNLKRKAGLLSTDQLLFSDKRTSPFVDLFATQPFVFTSQFAVSMVKLGNVQVLTRPNEGEIRVNCNYVNRF