AlfalfaGEDB | MS.gene74557

M. sativa cultivar XinJiangDaYe / MS.gene74557

KEGG: K00430
GO: GO:0003674 GO:0003824 GO:0004601 GO:0005488 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009987 GO:0016209 GO:0016491 GO:0016684 GO:0016999 GO:0017001 GO:0017144 GO:0020037 GO:0042737 GO:0042743 GO:0042744 GO:0044237 GO:0044248 GO:0046906 GO:0048037 GO:0050896 GO:0051186 GO:0051187 GO:0055114 GO:0072593 GO:0097159 GO:1901363
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74557.t1	AAB41811.1	100	353	0	0	1	353	1	353	3.20E-199	704.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74557.t1	Q9LEH3	63.5	307	111	1	26	331	21	327	4.4e-104	379.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74557.t1	Q40366	100.0	353	0	0	1	353	1	353	2.3e-199	704.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058015	MS.gene74557	0.806548	7.80E-50	-1.69E-46
MS.gene060076	MS.gene74557	0.800031	1.74E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene003275	MS.gene74557	PPI
MS.gene003284	MS.gene74557	PPI
MS.gene006133	MS.gene74557	PPI
MS.gene012725	MS.gene74557	PPI
MS.gene02036	MS.gene74557	PPI
MS.gene02077	MS.gene74557	PPI
MS.gene02083	MS.gene74557	PPI
MS.gene02085	MS.gene74557	PPI
MS.gene02087	MS.gene74557	PPI
MS.gene03127	MS.gene74557	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74557.t1	MTR_2g029850	95.714	350	15	0	4	353	3	352	0.0	689
MS.gene74557.t1	MTR_2g029860	77.077	349	77	3	7	353	6	353	0.0	540
MS.gene74557.t1	MTR_2g029820	73.043	345	90	1	11	352	10	354	0.0	522
MS.gene74557.t1	MTR_2g029910	73.729	354	91	2	1	353	1	353	0.0	521
MS.gene74557.t1	MTR_2g029800	71.875	352	94	2	4	352	3	352	0.0	514
MS.gene74557.t1	MTR_2g029815	71.930	342	96	0	11	352	10	351	0.0	507
MS.gene74557.t1	MTR_2g029830	72.372	333	88	2	23	351	21	353	2.65e-173	486
MS.gene74557.t1	MTR_2g028980	66.193	352	116	1	4	352	3	354	9.52e-168	472
MS.gene74557.t1	MTR_2g029740	65.909	352	117	1	4	352	3	354	6.46e-167	469
MS.gene74557.t1	MTR_2g029750	64.489	352	121	2	4	352	3	353	5.65e-161	454

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene74557.t1	AT5G06720	57.862	318	134	0	15	332	17	334	9.18e-128	370
MS.gene74557.t1	AT5G06730	54.896	337	152	0	15	351	18	354	4.30e-127	369
MS.gene74557.t1	AT3G49120	55.963	327	139	3	15	336	14	340	3.24e-123	358
MS.gene74557.t1	AT4G08770	55.911	313	136	2	26	336	20	332	5.73e-123	358
MS.gene74557.t1	AT3G49110	57.827	313	130	2	26	336	29	341	7.26e-123	358
MS.gene74557.t1	AT2G38380	53.354	328	146	2	26	352	27	348	1.15e-121	355
MS.gene74557.t1	AT2G38390	52.744	328	148	2	26	352	27	348	5.59e-120	350
MS.gene74557.t1	AT4G08780	54.633	313	140	2	26	336	20	332	7.01e-120	350
MS.gene74557.t1	AT3G32980	55.911	313	136	2	26	336	27	339	1.49e-119	349
MS.gene74557.t1	AT5G19880	51.456	309	147	2	26	331	21	329	5.56e-106	314

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Find 68 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAATGTAACTTTGTTAA+TGG	0.179025	2.3:-59800450	MS.gene74557:CDS
AAACTATCTCTTCTTCCTAA+TGG	0.358275	2.3:+59801144	None:intergenic
AAACTTTGATAGACAAGGTC+TGG	0.436585	2.3:-59801052	MS.gene74557:CDS
AAAGTGTTAACTGGATCTCA+AGG	0.570509	2.3:-59800483	MS.gene74557:CDS
AAATCAGTGAGGGTGCTACC+AGG	0.569044	2.3:+59800702	None:intergenic
AACTTGATAATTCCTTCTAT+AGG	0.337654	2.3:-59802775	MS.gene74557:CDS
AACTTTGTTAATGGAAATTC+TGG	0.240702	2.3:-59800441	MS.gene74557:CDS
AAGCTTCAAAGAAAAGAGTT+TGG	0.356755	2.3:+59800538	None:intergenic
AAGTAGGTTGTGTTGAGAGT+TGG	0.531334	2.3:+59800759	None:intergenic
AAGTTGTGCATTTGAAGAGA+AGG	0.538902	2.3:+59802793	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTATCTCTTCTTCCTAA+TGG	+	chr2.3:59802102-59802121	None:intergenic	30.0%
AAGCTTCAAAGAAAAGAGTT+TGG	+	chr2.3:59802708-59802727	None:intergenic	30.0%
AATCCTTAGGTTTGAATAGT+AGG	+	chr2.3:59802599-59802618	None:intergenic	30.0%
CATGAAAGTGACATAAGAAA+AGG	-	chr2.3:59801159-59801178	MS.gene74557:CDS	30.0%
GGAAATAACAACTCAATAAG+AGG	-	chr2.3:59800915-59800934	MS.gene74557:intron	30.0%
GTCTTTCTCTCGTAAAATAT+AGG	-	chr2.3:59801512-59801531	MS.gene74557:intron	30.0%
GTTGTTGAAACTATTGACAA+TGG	+	chr2.3:59802683-59802702	None:intergenic	30.0%
TAACAACTCAATAAGAGGTT+TGG	-	chr2.3:59800920-59800939	MS.gene74557:intron	30.0%
TCAAACCTAAGGATTCAAAA+AGG	-	chr2.3:59802604-59802623	MS.gene74557:intron	30.0%
TGAAAGTGACATAAGAAAAG+GGG	-	chr2.3:59801161-59801180	MS.gene74557:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.3	gene	59800383	59802882	59800383	ID=MS.gene74557
chr2.3	mRNA	59800383	59802882	59800383	ID=MS.gene74557.t1;Parent=MS.gene74557
chr2.3	exon	59802658	59802882	59802658	ID=MS.gene74557.t1.exon1;Parent=MS.gene74557.t1
chr2.3	CDS	59802658	59802882	59802658	ID=cds.MS.gene74557.t1;Parent=MS.gene74557.t1
chr2.3	exon	59802222	59802413	59802222	ID=MS.gene74557.t1.exon2;Parent=MS.gene74557.t1
chr2.3	CDS	59802222	59802413	59802222	ID=cds.MS.gene74557.t1;Parent=MS.gene74557.t1
chr2.3	exon	59801025	59801190	59801025	ID=MS.gene74557.t1.exon3;Parent=MS.gene74557.t1
chr2.3	CDS	59801025	59801190	59801025	ID=cds.MS.gene74557.t1;Parent=MS.gene74557.t1
chr2.3	exon	59800383	59800861	59800383	ID=MS.gene74557.t1.exon4;Parent=MS.gene74557.t1
chr2.3	CDS	59800383	59800861	59800383	ID=cds.MS.gene74557.t1;Parent=MS.gene74557.t1

Gene Sequence

>MS.gene74557

ATGAACTCTTCTTTCAATCTCACATTGGCAGCTTTGTGCTGTGTGGTGGTTGTGCTTGGAGGGTTACCCTTCTCTTCAAATGCACAACTTGATAATTCCTTCTATAGGGACACTTGTCCTAATGTTCATTCCATTGTTCGTGAAGTACTAAGGAATGTTTCTAAGACAGATCCTCGTATACTTGCTAGTTTGATGAGAGTTCACTTCCATGATTGCTTTGTTCAAGTAAGTATTATTCATCATTTTTAATTAATTAGGTGTATTTTCTAAATCATGTTTAGTTTTTGGTAACTCCAAATTGTAGTTTTTGGTAAAACTATAGTAGCACACTATAGTAATTTTGTCTAACACAATCAAACCAATATGTACTATTTTTTTTTAAAACTCGGTATCTGATCAAGGACCGACTGATCCGAAAAACATTTTTGGTATTTGTAGCTCATATATTTTATATCTATGTTTATGAAAGGGTTGTGATGCATCAATCTTGTTGAATACCACTTCGACGATTACGAGTGAGCAAACAGCTTTTGGAAATAACAACTCAATAAGAGGTTTGGATGTTGTGAATCAAATCAAAACAGCAGTTGAAAATGCTTGTCCTAACACTGTTTCTTGTGCTGATATTCTTGCACTTGCTGCTGAAATTTCCTCTGTTCTGGTATGTTCCATTTCCATTTTTCTAGTTCTAGTTTACGAAAACAACAACACTGTAATAAAAAAGTAGCTAAAATAAAAAGTTATGTTGCAAGAACTATTTTCTTCTTTATTTTTAACATGAAAGTGACATAAGAAAAGGGGAAAAAAAGTATTAAAGTGGCATATTTATAAAGACAAAATTATTTGTCGTATTTTCCCTCACGGAAAATTATTTGTAGAATTTAATTGTTATTCTTTCGATCTCATAATGAGTTTCTCAGATTTGTTTTTTGTTTATTTCACACACCTAAGAATAAACTAACGAGACGTTTTAGGAAAATAAATAAATTGTTTTAAAATGAATTTCATTTTACATTTTTAATACAACTTTAATTTATTTTTCCAACTTTGTCTTTAATAAATACTTCAATTCAATTTATCTCTTTTTCAGAATTTTCAATATAACTTAATATTTCTTAATATTAAGTTTGTCTTTCTCTCGTAAAATATAGGTAGTTTAGTAAAAATTTCATGTTTATTGATTATTTTATTCAATTTCTTAATATGTGTGTCAAAATCTTAAACGACACTCATTGTGAAACAGAGGGAGTATATAAAAGAAAATGAATAACAATTTCACTAAATTATCCTTAGTATGCATTGATTTGTTTACTATTATGCAATTGCTGCAAATTTATTTCTAGGCAAATAATTTTTATCATTAAATATTTTCTTTGTGAAGAATTCTTAACACATGTCTTACGAGTACATGAACATATGTTAACATGACCCTTATCATAAATGCAAATAAAAAATAATAATAATAATTTATAAGCAATAAATAATTAGAGGGTACAATTAAAAATAATAATAATTTACAATAAGTATTGAAAATTACAATCATTTTAGATTCACCTTTTTTACAAATGTAAACTATATTTTGTCTTTCCTTTTTTTTACTCTTATTTAGCTCAAGACTATAATTCTTCATTTTTTTTAAGCATCGTCATTTTTACTTGCGATTCTCATTTATTCTAGTAACATAATTTGCAGGCTCATGGTCCTGATTGGAAAGTGCCATTAGGAAGAAGAGATAGTTTAACAGCAAATTTAACCCTTGCTAATGAAAATCTTCCTAGTCCCGCTTTCAACCTTAGTGAACTGAAAAAAAACTTTGATAGACAAGGTCTGGACACTACAGATCTAGTTGCACTTTCAGGTATAAAAATGTTTCCTAAATTAGAGAAATTATTATTAATTAAATTGATATTACTATACACCATTTTACAAATGAGATTTGAACTCCGTTCGTTAAGGGTGATATACCTCATGATGTACGTATATGTGTGCATCTAATTGTATATGTTTTGGTAAATTTTTAGGTGCTCATACAATTGGTAGAGGTCAATGCAGATTCTTCGTTGATCGATTATACAATTTCAGCAATACTGGAAATCCCGATCCAACTCTCAACACAACCTACTTACAAACATTGAGAACAATATGTCCCAATGGTGGACCTGGTAGCACCCTCACTGATTTGGATCCAACCACTCCAGATACATTCGACTCGGCCTACTATTCAAACCTAAGGATTCAAAAAGGCTTGTTTGAGAGTGACCAAGTATTGGCTTCCACAAGTGGCGCAGACACGATTGCCATTGTCAATAGTTTCAACAACAACCAAACTCTTTTCTTTGAAGCTTTTAAGGCCTCAATGATTAAAATGAGTAAAATTAAAGTGTTAACTGGATCTCAAGGTGAAATTAGAAAACAATGTAACTTTGTTAATGGAAATTCTGGTCTTGCCACTAAAGTCATCAGAGAGTCGTCAGAGGATGGTATTGTTAGCTCATACTAA

Protein sequence

>MS.gene74557.t1

MNSSFNLTLAALCCVVVVLGGLPFSSNAQLDNSFYRDTCPNVHSIVREVLRNVSKTDPRILASLMRVHFHDCFVQGCDASILLNTTSTITSEQTAFGNNNSIRGLDVVNQIKTAVENACPNTVSCADILALAAEISSVLAHGPDWKVPLGRRDSLTANLTLANENLPSPAFNLSELKKNFDRQGLDTTDLVALSGAHTIGRGQCRFFVDRLYNFSNTGNPDPTLNTTYLQTLRTICPNGGPGSTLTDLDPTTPDTFDSAYYSNLRIQKGLFESDQVLASTSGADTIAIVNSFNNNQTLFFEAFKASMIKMSKIKVLTGSQGEIRKQCNFVNGNSGLATKVIRESSEDGIVSSY