AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene74560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74560.t1 MTR_2g029815 97.443 352 9 0 1 352 1 352 0.0 702
MS.gene74560.t1 MTR_2g029820 89.577 355 34 1 1 352 1 355 0.0 650
MS.gene74560.t1 MTR_2g029800 82.153 353 62 1 1 352 1 353 0.0 593
MS.gene74560.t1 MTR_2g029830 83.792 327 53 0 22 348 21 347 0.0 568
MS.gene74560.t1 MTR_2g028980 74.366 355 88 1 1 352 1 355 0.0 541
MS.gene74560.t1 MTR_2g029740 73.521 355 91 2 1 352 1 355 0.0 526
MS.gene74560.t1 MTR_2g029750 71.751 354 98 1 1 352 1 354 0.0 520
MS.gene74560.t1 MTR_2g029850 72.365 351 97 0 1 351 1 351 0.0 515
MS.gene74560.t1 MTR_2g029860 71.469 354 98 3 1 352 1 353 1.51e-180 504
MS.gene74560.t1 MTR_2g029830 84.364 275 43 0 74 348 5 279 9.91e-173 481
MS.gene74560.t1 MTR_2g029910 67.151 344 111 2 10 352 11 353 3.92e-168 473
MS.gene74560.t1 MTR_2g029560 66.286 350 111 2 1 350 1 343 1.04e-164 464
MS.gene74560.t1 MTR_2g029730 65.722 353 112 3 1 352 1 345 1.32e-162 458
MS.gene74560.t1 MTR_7g093370 60.938 320 120 2 16 330 52 371 2.08e-134 388
MS.gene74560.t1 MTR_1g054205 59.295 312 126 1 20 330 15 326 9.18e-133 382
MS.gene74560.t1 MTR_4g125940 53.185 314 143 2 20 331 19 330 1.19e-109 323
MS.gene74560.t1 MTR_5g021060 51.987 302 144 1 29 330 30 330 2.00e-107 318
MS.gene74560.t1 MTR_5g017860 51.803 305 143 3 27 330 25 326 2.82e-106 315
MS.gene74560.t1 MTR_2g040000 48.485 330 158 3 12 331 5 332 5.08e-106 314
MS.gene74560.t1 MTR_8g076820 49.505 303 152 1 29 331 30 331 1.74e-104 310
MS.gene74560.t1 MTR_5g017850 50.164 305 148 3 27 330 25 326 2.78e-104 309
MS.gene74560.t1 MTR_2g084080 47.385 325 162 2 6 330 2 317 1.65e-101 302
MS.gene74560.t1 MTR_3g094650 49.068 322 148 4 12 326 6 318 5.54e-100 298
MS.gene74560.t1 MTR_4g125940 55.797 276 118 2 58 331 2 275 1.48e-99 295
MS.gene74560.t1 MTR_2g084000 48.930 327 156 6 6 330 2 319 4.01e-99 296
MS.gene74560.t1 MTR_2g084110 46.769 325 164 2 6 330 2 317 5.04e-99 296
MS.gene74560.t1 MTR_4g029200 50.476 315 145 4 17 330 34 338 5.98e-99 296
MS.gene74560.t1 MTR_1g022970 48.675 302 155 0 29 330 46 347 2.61e-98 295
MS.gene74560.t1 MTR_3g072190 47.188 320 160 2 11 330 8 318 1.62e-97 292
MS.gene74560.t1 MTR_3g094670 49.085 328 152 4 1 326 4 318 2.22e-97 291
MS.gene74560.t1 MTR_4g083710 50.325 308 143 4 26 330 24 324 4.16e-97 291
MS.gene74560.t1 MTR_2g084020 46.519 316 161 2 15 330 11 318 2.32e-96 289
MS.gene74560.t1 MTR_3g466200 48.000 325 153 5 9 330 9 320 2.37e-96 289
MS.gene74560.t1 MTR_3g094630 49.398 332 153 4 1 330 4 322 1.07e-95 287
MS.gene74560.t1 MTR_5g083860 48.220 309 149 3 24 330 26 325 1.53e-95 287
MS.gene74560.t1 MTR_7g072510 47.039 304 152 2 27 330 18 312 2.28e-95 286
MS.gene74560.t1 MTR_2g084010 46.203 316 162 2 15 330 11 318 1.64e-94 284
MS.gene74560.t1 MTR_2g084090 46.835 316 160 2 15 330 11 318 1.79e-94 284
MS.gene74560.t1 MTR_5g074970 47.416 329 158 5 7 330 8 326 5.41e-94 283
MS.gene74560.t1 MTR_4g029170 47.447 333 160 6 1 330 1 321 6.45e-94 283
MS.gene74560.t1 MTR_4g029190 48.961 337 150 7 7 330 13 340 1.12e-93 283
MS.gene74560.t1 MTR_4g029180 49.333 300 141 4 33 330 31 321 7.76e-93 280
MS.gene74560.t1 MTR_4g046713 44.582 323 171 4 9 330 11 326 1.34e-91 277
MS.gene74560.t1 MTR_7g072480 45.963 322 158 3 9 330 11 316 1.96e-91 276
MS.gene74560.t1 MTR_4g122640 46.865 303 156 3 29 330 38 336 1.11e-90 275
MS.gene74560.t1 MTR_1g115900 44.548 321 167 5 13 331 11 322 3.75e-90 273
MS.gene74560.t1 MTR_4g074995 48.052 308 137 5 26 330 21 308 2.12e-89 271
MS.gene74560.t1 MTR_5g014100 47.525 303 155 2 32 330 29 331 5.34e-89 271
MS.gene74560.t1 MTR_2g088770 44.340 318 171 5 15 330 12 325 6.53e-89 270
MS.gene74560.t1 MTR_7g107520 44.620 316 169 4 15 330 11 320 3.57e-88 268
MS.gene74560.t1 MTR_2g029880 62.441 213 69 3 139 351 7 208 1.28e-87 263
MS.gene74560.t1 MTR_5g049280 43.465 329 171 7 14 331 14 338 2.83e-87 266
MS.gene74560.t1 MTR_5g074740 44.000 325 171 4 9 330 5 321 9.11e-87 265
MS.gene74560.t1 MTR_4g114210 45.016 311 157 6 26 330 18 320 9.75e-87 265
MS.gene74560.t1 MTR_3g466180 46.104 308 157 2 23 330 25 323 1.64e-86 264
MS.gene74560.t1 MTR_5g074760 44.375 320 167 4 14 330 10 321 1.86e-86 264
MS.gene74560.t1 MTR_2g008710 46.026 302 152 5 33 330 31 325 4.42e-86 263
MS.gene74560.t1 MTR_4g031140 41.987 312 176 3 25 336 24 330 5.48e-86 263
MS.gene74560.t1 MTR_7g086820 43.791 306 163 5 27 332 18 314 8.57e-86 262
MS.gene74560.t1 MTR_4g030890 43.366 309 170 3 24 332 95 398 1.10e-85 265
MS.gene74560.t1 MTR_5g074710 44.615 325 169 4 9 330 5 321 1.18e-85 262
MS.gene74560.t1 MTR_5g074860 43.865 326 170 6 7 329 9 324 4.10e-84 258
MS.gene74560.t1 MTR_4g074990 45.455 308 142 4 26 330 21 305 1.15e-83 256
MS.gene74560.t1 MTR_3g092990 42.633 319 180 2 14 331 11 327 1.21e-83 257
MS.gene74560.t1 MTR_3g467600 46.602 309 155 4 25 330 23 324 3.18e-83 256
MS.gene74560.t1 MTR_6g043240 46.605 324 150 9 29 348 42 346 1.41e-82 255
MS.gene74560.t1 MTR_1g101830 44.118 306 165 4 25 330 23 322 1.89e-81 251
MS.gene74560.t1 MTR_8g075100 43.408 311 160 7 24 330 21 319 6.90e-81 249
MS.gene74560.t1 MTR_5g022870 41.994 331 170 9 6 330 2 316 1.34e-80 249
MS.gene74560.t1 MTR_7g026990 42.053 302 165 4 30 331 32 323 3.92e-80 248
MS.gene74560.t1 MTR_5g016010 41.742 333 185 5 1 329 1 328 6.25e-80 247
MS.gene74560.t1 MTR_1g038680 44.371 302 162 6 33 330 33 332 1.08e-79 247
MS.gene74560.t1 MTR_1g086320 41.617 334 187 5 1 330 4 333 1.59e-79 246
MS.gene74560.t1 MTR_1g009750 45.277 307 160 5 28 330 26 328 1.92e-79 246
MS.gene74560.t1 MTR_4g133800 41.246 337 179 7 3 330 7 333 2.96e-79 246
MS.gene74560.t1 MTR_3g072190 48.649 259 124 2 72 330 2 251 6.63e-79 242
MS.gene74560.t1 MTR_6g027440 42.547 322 172 7 11 330 4 314 9.80e-79 244
MS.gene74560.t1 MTR_1g086490 41.349 341 185 5 1 330 4 340 1.04e-78 244
MS.gene74560.t1 MTR_4g087965 43.279 305 166 5 28 327 41 343 1.10e-78 245
MS.gene74560.t1 MTR_6g043280 43.902 328 155 9 20 332 21 334 1.12e-78 244
MS.gene74560.t1 MTR_4g127670 45.545 303 155 5 28 326 23 319 7.05e-77 239
MS.gene74560.t1 MTR_7g029030 44.643 336 164 10 1 330 1 320 7.09e-77 239
MS.gene74560.t1 MTR_2g437770 43.092 304 161 6 29 331 50 342 2.05e-76 239
MS.gene74560.t1 MTR_4g095450 43.252 326 164 7 6 326 11 320 2.03e-75 236
MS.gene74560.t1 MTR_4g074980 43.506 308 142 5 23 330 19 294 3.23e-75 234
MS.gene74560.t1 MTR_1g025980 42.951 305 159 6 29 329 24 317 2.23e-74 233
MS.gene74560.t1 MTR_7g086870 41.694 307 163 7 27 331 20 312 1.51e-73 230
MS.gene74560.t1 MTR_4g074980 48.133 241 116 3 23 260 19 253 4.27e-73 227
MS.gene74560.t1 MTR_4g132490 39.222 334 187 7 3 330 4 327 1.71e-72 228
MS.gene74560.t1 MTR_1g090760 41.456 316 175 6 21 330 19 330 9.43e-72 226
MS.gene74560.t1 MTR_6g043460 42.333 300 160 6 29 326 36 324 3.62e-71 226
MS.gene74560.t1 MTR_1g077000 38.623 334 188 7 1 330 7 327 7.62e-71 224
MS.gene74560.t1 MTR_3g092990 40.125 319 177 3 14 331 11 316 7.69e-71 224
MS.gene74560.t1 MTR_2g099175 37.609 343 195 7 1 331 1 336 1.07e-70 224
MS.gene74560.t1 MTR_2g008160 40.514 311 173 6 25 330 20 323 2.08e-70 223
MS.gene74560.t1 MTR_0155s0040 39.869 306 169 6 26 330 24 315 2.32e-70 222
MS.gene74560.t1 MTR_1g009750 41.694 307 154 6 28 330 26 311 1.64e-68 218
MS.gene74560.t1 MTR_5g033470 39.423 312 176 7 27 330 71 377 4.28e-68 218
MS.gene74560.t1 MTR_8g062780 37.576 330 193 6 5 330 4 324 5.41e-66 211
MS.gene74560.t1 MTR_2g008730 39.130 322 160 6 14 330 11 301 5.73e-65 208
MS.gene74560.t1 MTR_2g067440 35.068 365 189 8 3 331 36 388 1.16e-63 207
MS.gene74560.t1 MTR_5g074860 37.423 326 152 5 7 329 9 285 1.24e-63 204
MS.gene74560.t1 MTR_3g105790 38.854 314 184 3 15 326 11 318 8.39e-63 203
MS.gene74560.t1 MTR_0286s0010 38.710 310 181 6 25 330 30 334 2.74e-62 202
MS.gene74560.t1 MTR_6g008075 38.710 310 181 6 25 330 30 334 2.74e-62 202
MS.gene74560.t1 MTR_1g066710 38.511 309 177 5 27 331 25 324 3.42e-61 199
MS.gene74560.t1 MTR_2g078610 37.202 336 172 9 25 327 74 403 9.12e-61 200
MS.gene74560.t1 MTR_2g077990 37.612 335 170 9 25 326 74 402 1.27e-60 200
MS.gene74560.t1 MTR_1g066380 37.338 308 182 4 27 331 25 324 3.36e-59 194
MS.gene74560.t1 MTR_4g132110 36.808 307 181 5 33 335 36 333 5.76e-58 191
MS.gene74560.t1 MTR_1g066640 37.338 308 182 4 27 331 25 324 1.55e-57 189
MS.gene74560.t1 MTR_4g132110 37.179 312 178 7 33 335 36 338 2.21e-57 189
MS.gene74560.t1 MTR_1g066680 37.013 308 182 5 27 331 25 323 1.46e-56 187
MS.gene74560.t1 MTR_2g078280 37.231 325 165 9 25 316 74 392 3.20e-56 188
MS.gene74560.t1 MTR_2g067450 37.864 309 180 7 25 329 9 309 9.20e-56 184
MS.gene74560.t1 MTR_0147s0010 34.568 324 176 5 26 329 74 381 5.10e-55 185
MS.gene74560.t1 MTR_2g008160 35.691 311 153 6 25 330 20 288 5.95e-54 179
MS.gene74560.t1 MTR_3g072210 48.168 191 90 4 141 330 56 238 1.72e-48 163
MS.gene74560.t1 MTR_1g066380 38.168 262 151 4 73 331 3 256 1.30e-47 162
MS.gene74560.t1 MTR_2g008160 45.506 178 93 3 25 202 20 193 1.92e-47 159
MS.gene74560.t1 MTR_3g105790 39.662 237 139 2 96 330 12 246 6.93e-45 154
MS.gene74560.t1 MTR_5g074700 39.056 233 117 5 102 331 5 215 1.63e-42 147
MS.gene74560.t1 MTR_7g072490 38.153 249 91 4 75 323 2 187 9.21e-41 142
MS.gene74560.t1 MTR_3g072260 55.238 105 47 0 28 132 25 129 5.17e-35 125
MS.gene74560.t1 MTR_2g029930 57.522 113 20 3 14 112 4 102 6.48e-32 116
MS.gene74560.t1 MTR_5g058120 41.104 163 83 3 164 326 6 155 1.18e-29 114
MS.gene74560.t1 MTR_2g077980 30.605 281 150 11 91 331 11 286 3.67e-27 108
MS.gene74560.t1 MTR_2g078560 31.140 228 124 5 135 331 96 321 8.43e-26 105
MS.gene74560.t1 MTR_7g086790 33.679 193 104 5 76 267 17 186 1.65e-23 96.7
MS.gene74560.t1 MTR_3g462850 38.356 146 79 6 193 331 9 150 1.22e-21 90.1
MS.gene74560.t1 MTR_1g089005 43.243 111 56 2 29 133 15 124 8.57e-20 85.5
MS.gene74560.t1 MTR_1g098320 50.602 83 39 1 251 333 47 127 3.23e-19 83.2
MS.gene74560.t1 MTR_6g048160 56.338 71 27 2 68 138 22 88 2.48e-18 79.3
MS.gene74560.t1 MTR_4g114220 50.704 71 25 2 63 133 37 97 2.76e-16 75.5
MS.gene74560.t1 MTR_4g012865 46.479 71 38 0 26 96 74 144 2.99e-16 75.5
MS.gene74560.t1 MTR_7g107500 42.424 99 53 3 232 330 3 97 1.19e-15 72.0
MS.gene74560.t1 MTR_5g074770 39.796 98 53 2 232 329 17 108 7.40e-15 70.5
MS.gene74560.t1 MTR_7g086810 31.405 121 57 1 27 147 4 98 2.33e-13 69.3
MS.gene74560.t1 MTR_4g031040 28.571 175 81 3 88 262 1 131 5.57e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene74560.t1 AT5G06720 58.204 323 130 2 9 330 15 333 1.05e-133 385
MS.gene74560.t1 AT5G06730 55.685 343 147 2 9 350 16 354 1.94e-133 385
MS.gene74560.t1 AT2G38380 55.927 329 138 2 25 352 27 349 8.82e-130 375
MS.gene74560.t1 AT2G38390 54.407 329 143 2 25 352 27 349 3.85e-128 371
MS.gene74560.t1 AT3G49120 56.667 330 137 3 25 352 28 353 2.10e-127 369
MS.gene74560.t1 AT3G32980 56.364 330 138 3 25 352 27 352 1.46e-125 365
MS.gene74560.t1 AT3G49110 56.061 330 139 3 25 352 29 354 9.12e-124 360
MS.gene74560.t1 AT4G08770 55.937 320 139 2 25 342 20 339 1.09e-123 360
MS.gene74560.t1 AT4G08780 54.375 320 144 2 25 342 20 339 3.63e-120 350
MS.gene74560.t1 AT5G19880 52.978 319 144 3 15 330 14 329 2.08e-116 340
MS.gene74560.t1 AT5G19890 53.595 306 134 4 27 330 28 327 6.75e-108 319
MS.gene74560.t1 AT4G36430 50.974 308 150 1 24 331 25 331 1.55e-107 318
MS.gene74560.t1 AT2G18140 48.615 325 162 2 6 330 16 335 4.04e-107 317
MS.gene74560.t1 AT2G18150 50.658 304 149 1 27 330 34 336 3.88e-106 315
MS.gene74560.t1 AT5G66390 49.351 308 155 1 23 330 27 333 1.37e-105 313
MS.gene74560.t1 AT1G14550 51.148 305 141 4 27 330 24 321 1.15e-102 305
MS.gene74560.t1 AT5G05340 50.000 306 142 3 27 330 28 324 3.59e-101 301
MS.gene74560.t1 AT1G44970 49.351 308 154 1 23 330 41 346 3.70e-99 297
MS.gene74560.t1 AT1G14540 48.758 322 148 4 9 330 11 315 1.14e-98 295
MS.gene74560.t1 AT1G49570 47.213 305 156 3 27 328 46 348 5.46e-97 292
MS.gene74560.t1 AT3G50990 47.883 307 159 1 24 330 36 341 7.35e-97 291
MS.gene74560.t1 AT4G16270 47.855 303 153 4 29 330 50 348 1.28e-91 278
MS.gene74560.t1 AT1G68850 45.455 308 162 5 29 331 30 336 1.40e-88 270
MS.gene74560.t1 AT1G71695 46.749 323 154 7 29 348 44 351 1.86e-88 270
MS.gene74560.t1 AT2G22420 42.949 312 173 3 29 340 23 329 2.75e-87 266
MS.gene74560.t1 AT5G58400 45.399 326 162 5 5 327 10 322 1.77e-86 264
MS.gene74560.t1 AT2G35380 45.455 330 176 3 5 330 6 335 2.57e-86 264
MS.gene74560.t1 AT2G41480 43.425 327 170 6 12 330 9 328 3.76e-86 263
MS.gene74560.t1 AT2G18980 46.749 323 158 7 14 330 9 323 2.24e-85 261
MS.gene74560.t1 AT5G58390 45.253 316 161 4 14 326 6 312 6.88e-85 259
MS.gene74560.t1 AT3G03670 44.079 304 167 2 27 330 21 321 9.58e-85 259
MS.gene74560.t1 AT5G14130 44.654 318 167 5 18 330 17 330 2.09e-84 259
MS.gene74560.t1 AT5G14130 44.099 322 171 5 14 330 54 371 4.53e-84 259
MS.gene74560.t1 AT4G11290 41.231 325 186 4 8 330 5 326 2.04e-83 256
MS.gene74560.t1 AT3G21770 43.226 310 170 5 24 331 24 329 4.43e-83 255
MS.gene74560.t1 AT1G05260 41.317 334 185 7 1 331 1 326 5.41e-83 255
MS.gene74560.t1 AT4G30170 45.307 309 158 5 26 330 24 325 1.06e-82 254
MS.gene74560.t1 AT4G37530 45.806 310 161 5 25 330 23 329 5.23e-82 253
MS.gene74560.t1 AT5G15180 40.752 319 180 6 13 330 19 329 6.86e-82 252
MS.gene74560.t1 AT5G51890 43.293 328 170 8 8 330 6 322 4.28e-81 250
MS.gene74560.t1 AT5G64120 42.462 325 169 7 12 330 16 328 8.94e-81 249
MS.gene74560.t1 AT5G17820 41.009 317 174 6 14 330 10 313 2.20e-80 248
MS.gene74560.t1 AT5G17820 41.009 317 174 6 14 330 63 366 2.74e-79 247
MS.gene74560.t1 AT3G01190 42.006 319 177 7 14 330 9 321 2.79e-79 245
MS.gene74560.t1 AT1G05240 43.689 309 158 7 29 330 26 325 8.64e-79 244
MS.gene74560.t1 AT1G05250 43.689 309 158 7 29 330 26 325 8.64e-79 244
MS.gene74560.t1 AT3G49960 42.025 326 179 5 9 330 10 329 2.29e-78 243
MS.gene74560.t1 AT5G39580 41.994 331 176 7 1 330 4 319 3.13e-78 243
MS.gene74560.t1 AT4G25980 40.979 327 178 6 9 330 10 326 3.88e-78 243
MS.gene74560.t1 AT5G67400 41.768 328 181 5 7 330 8 329 4.48e-78 243
MS.gene74560.t1 AT4G37520 42.532 308 170 5 27 330 25 329 1.29e-74 234
MS.gene74560.t1 AT5G42180 40.683 322 183 5 8 329 3 316 8.39e-74 231
MS.gene74560.t1 AT4G37520 42.208 308 168 6 27 330 25 326 3.17e-73 230
MS.gene74560.t1 AT5G64110 44.371 302 155 7 33 330 38 330 8.50e-72 226
MS.gene74560.t1 AT4G37530 48.062 258 129 4 25 278 23 279 1.06e-71 225
MS.gene74560.t1 AT2G39040 41.853 313 167 9 27 330 44 350 4.67e-71 225
MS.gene74560.t1 AT5G64100 42.193 301 161 7 33 330 41 331 5.65e-71 224
MS.gene74560.t1 AT2G24800 41.558 308 169 5 27 330 29 329 6.98e-71 224
MS.gene74560.t1 AT4G31760 39.550 311 178 4 23 330 23 326 8.36e-71 224
MS.gene74560.t1 AT5G40150 41.270 315 176 4 18 330 21 328 8.68e-71 224
MS.gene74560.t1 AT4G33420 38.532 327 187 7 4 330 13 325 1.73e-70 223
MS.gene74560.t1 AT4G33420 38.532 327 187 7 4 330 60 372 5.79e-70 223
MS.gene74560.t1 AT5G24070 38.507 335 191 7 4 331 10 336 8.66e-70 222
MS.gene74560.t1 AT2G34060 39.935 308 176 6 26 327 39 343 9.55e-70 222
MS.gene74560.t1 AT1G77100 39.634 328 184 6 7 330 2 319 1.01e-69 221
MS.gene74560.t1 AT4G26010 40.432 324 168 9 14 330 4 309 4.15e-69 219
MS.gene74560.t1 AT4G26010 40.432 324 168 9 14 330 32 337 5.99e-69 219
MS.gene74560.t1 AT4G17690 40.129 309 174 5 29 334 26 326 2.22e-68 218
MS.gene74560.t1 AT3G28200 40.129 309 175 5 24 330 16 316 3.19e-68 217
MS.gene74560.t1 AT5G47000 38.298 329 192 6 9 334 14 334 7.62e-68 216
MS.gene74560.t1 AT2G43480 39.799 299 167 6 37 330 45 335 2.56e-67 215
MS.gene74560.t1 AT1G24110 38.554 332 183 9 8 330 3 322 8.08e-67 214
MS.gene74560.t1 AT1G30870 39.355 310 171 7 29 333 51 348 3.52e-66 213
MS.gene74560.t1 AT4G33870 34.226 336 183 5 27 327 66 398 9.55e-66 213
MS.gene74560.t1 AT1G34510 39.319 323 178 7 10 330 3 309 2.69e-64 207
MS.gene74560.t1 AT2G35380 47.368 247 126 3 88 330 1 247 1.10e-63 203
MS.gene74560.t1 AT5G22410 37.705 305 176 7 27 326 26 321 2.28e-63 205
MS.gene74560.t1 AT4G21960 35.952 331 197 6 7 331 7 328 1.43e-60 197
MS.gene74560.t1 AT3G17070 39.557 316 173 9 24 330 33 339 2.92e-58 192
MS.gene74560.t1 AT2G37130 35.922 309 186 5 26 330 27 327 9.48e-55 182
MS.gene74560.t1 AT2G37130 36.093 302 181 5 33 330 3 296 1.02e-53 179
MS.gene74560.t1 AT4G25980 44.286 210 104 5 9 213 55 256 1.38e-50 171
MS.gene74560.t1 AT5G39580 40.756 238 119 6 1 231 4 226 2.00e-43 150
MS.gene74560.t1 AT3G17070 38.662 269 146 10 71 330 18 276 1.38e-42 149
MS.gene74560.t1 AT2G24800 41.860 172 96 1 27 198 29 196 3.37e-37 134
MS.gene74560.t1 AT4G08390 26.299 308 178 11 27 314 83 361 3.07e-14 73.6
MS.gene74560.t1 AT4G08390 26.299 308 178 11 27 314 84 362 3.54e-14 73.2
MS.gene74560.t1 AT4G08390 26.299 308 178 11 27 314 84 362 3.54e-14 73.2
MS.gene74560.t1 AT4G08390 26.299 308 178 11 27 314 84 362 3.54e-14 73.2
MS.gene74560.t1 AT1G77490 26.996 263 154 9 63 314 106 341 3.91e-14 73.6
MS.gene74560.t1 AT1G77490 26.996 263 154 9 63 314 106 341 5.18e-14 73.2
MS.gene74560.t1 AT3G42570 32.407 108 71 2 90 196 43 149 3.20e-11 61.2

Find 61 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTGCTATGATTAAAA+TGG 0.162076 2.3:-59843278 MS.gene74560:CDS
GGAAATATTGGTGTGTTAAC+CGG 0.297989 2.3:-59843256 MS.gene74560:CDS
TCCAGCTCCTTTCAACTCAT+TGG 0.300263 2.3:-59843808 MS.gene74560:CDS
TCTAATCTCTCCTTGGTTCC+CGG 0.308228 2.3:+59843237 None:intergenic
CCTCTTAATGAGTTTCTGTT+TGG 0.310696 2.3:+59844134 None:intergenic
AAACCATCTCTTCTTCCTAA+TGG 0.312841 2.3:+59843864 None:intergenic
TGCTGTATTGTGGCTGTGTT+TGG 0.323652 2.3:-59844477 MS.gene74560:CDS
GTATGCTTGCTAGTCTTGTT+AGG 0.342382 2.3:-59844338 MS.gene74560:CDS
CAGAAACTCATTAAGAGGTT+TGG 0.342785 2.3:-59844129 MS.gene74560:CDS
ATCGCAGGTGCTCATACATT+TGG 0.352412 2.3:-59843610 MS.gene74560:intron
TAGTTGTTGTCAAATTTATC+AGG 0.356194 2.3:+59843430 None:intergenic
CCTAATGGAACTTTCCAATC+AGG 0.362142 2.3:+59843879 None:intergenic
AAACTTGCAAGGGGAGTTCC+AGG 0.371860 2.3:+59843466 None:intergenic
CCAAACAGAAACTCATTAAG+AGG 0.372095 2.3:-59844134 MS.gene74560:CDS
CGGACAATGGAACTAACATT+TGG 0.382367 2.3:+59844396 None:intergenic
ATGATTAAAATGGGAAATAT+TGG 0.387468 2.3:-59843268 MS.gene74560:CDS
TCAAATTTATCAGGAGTAGT+TGG 0.398231 2.3:+59843439 None:intergenic
AAAATTGTTGACAATACTAA+TGG 0.398283 2.3:+59843333 None:intergenic
AACAGTCTCAAGGCCCTGAT+TGG 0.404177 2.3:-59843893 MS.gene74560:intron
AGTTGTGCATTTGAAGAGAA+AGG 0.444177 2.3:+59844447 None:intergenic
TTGTACAACTTCAGCAATAC+AGG 0.450663 2.3:-59843556 MS.gene74560:CDS
CCTGATTGGAAAGTTCCATT+AGG 0.453191 2.3:-59843879 MS.gene74560:CDS
CAAGAGTTGTTCTCAACGTC+TGG 0.458030 2.3:-59843364 MS.gene74560:CDS
AATCAAAACAGCAGTGGAAA+AGG 0.460271 2.3:-59844093 MS.gene74560:CDS
AAGGCTGCTATGATTAAAAT+GGG 0.470087 2.3:-59843277 MS.gene74560:CDS
TACTGATCTAGTTGCACTCT+CGG 0.473292 2.3:-59843745 MS.gene74560:CDS
TCAGCACAAGAAACTGTGTT+AGG 0.474603 2.3:+59844065 None:intergenic
AAACGGTTCTTATGACTTCA+CGG 0.480660 2.3:+59844376 None:intergenic
AAGTAAGTTGTGTTAAGAGT+TGG 0.480928 2.3:+59843523 None:intergenic
TCCAATGAGTTGAAAGGAGC+TGG 0.482187 2.3:+59843807 None:intergenic
AATAGCTTTGTGCTGTATTG+TGG 0.497732 2.3:-59844487 MS.gene74560:CDS
AGTTGTGTTAAGAGTTGGAT+CGG 0.507183 2.3:+59843528 None:intergenic
ATATGTCCCAATGGTGGACC+TGG 0.507847 2.3:-59843484 MS.gene74560:CDS
GGAGTTCCAGGTCCACCATT+GGG 0.508361 2.3:+59843478 None:intergenic
TCTTATGACTTCACGGACAA+TGG 0.512577 2.3:+59844383 None:intergenic
GAAATATTGGTGTGTTAACC+GGG 0.517789 2.3:-59843255 MS.gene74560:CDS
GTTGTGTTAAGAGTTGGATC+GGG 0.518642 2.3:+59843529 None:intergenic
TGCCTCAACAGAGGAGGGTA+TGG 0.518844 2.3:-59843161 MS.gene74560:CDS
GGGAGTTCCAGGTCCACCAT+TGG 0.527464 2.3:+59843477 None:intergenic
AGTTGATCCAATGAGTTGAA+AGG 0.537741 2.3:+59843801 None:intergenic
CTAATGGAACTTTCCAATCA+GGG 0.541881 2.3:+59843880 None:intergenic
AAAGCTGCATTTGCTGCTCA+AGG 0.545185 2.3:-59843777 MS.gene74560:CDS
CGCAATATATGTCCCAATGG+TGG 0.550346 2.3:-59843490 MS.gene74560:CDS
ACGAGTATCTGTCTTAGAAA+CGG 0.557887 2.3:+59844359 None:intergenic
GTTCCATTAGGAAGAAGAGA+TGG 0.569226 2.3:-59843867 MS.gene74560:CDS
ACTGATCTAGTTGCACTCTC+GGG 0.569804 2.3:-59843744 MS.gene74560:intron
AGTTGGATCAAAACTTGCAA+GGG 0.570962 2.3:+59843456 None:intergenic
TAGTTGGATCAAAACTTGCA+AGG 0.578934 2.3:+59843455 None:intergenic
ATACTTGAACAAAACAGTCA+TGG 0.583464 2.3:+59844307 None:intergenic
AACTCAAAATCAGTAGAACT+AGG 0.583865 2.3:-59843196 MS.gene74560:CDS
CAATGTTGCCTCAACAGAGG+AGG 0.587955 2.3:-59843167 MS.gene74560:CDS
AACCATACCCTCCTCTGTTG+AGG 0.590356 2.3:+59843159 None:intergenic
GATGAAATCAAACAGTCTCA+AGG 0.616268 2.3:-59843903 MS.gene74560:intron
TTGCGCAATATATGTCCCAA+TGG 0.625828 2.3:-59843493 MS.gene74560:CDS
AATGTTGCCTCAACAGAGGA+GGG 0.631884 2.3:-59843166 MS.gene74560:CDS
GAATCAAATCAAAACAGCAG+TGG 0.631969 2.3:-59844099 MS.gene74560:CDS
GGTGTGTTAACCGGGAACCA+AGG 0.643371 2.3:-59843247 MS.gene74560:CDS
TGCTGAATTATCATCTACAC+TGG 0.647562 2.3:-59844027 MS.gene74560:intron
GTTGGATCAAAACTTGCAAG+GGG 0.672219 2.3:+59843457 None:intergenic
TGTCAATGTTGCCTCAACAG+AGG 0.676561 2.3:-59843170 MS.gene74560:CDS
CAACTAGATCAGTAGTACTG+AGG 0.702013 2.3:+59843754 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTTAAAAATTTCTAAT+TGG - chr2.3:59843956-59843975 MS.gene74560:intron 10.0%
!!! ACTACATTTAAAATTCAATA+TGG + chr2.3:59843697-59843716 None:intergenic 15.0%
!! AAAATTGTTGACAATACTAA+TGG + chr2.3:59844327-59844346 None:intergenic 20.0%
!! ATGATTAAAATGGGAAATAT+TGG - chr2.3:59844389-59844408 MS.gene74560:CDS 20.0%
!! TAAATTATGTGATCTATGAT+TGG - chr2.3:59843432-59843451 MS.gene74560:CDS 20.0%
!! TGAAGATACTATAACTATAT+AGG + chr2.3:59843670-59843689 None:intergenic 20.0%
! ACAAATCATTTACAAGTAGA+AGG + chr2.3:59843386-59843405 None:intergenic 25.0%
! TACTATAACTATATAGGATG+AGG + chr2.3:59843664-59843683 None:intergenic 25.0%
! TAGTTGTTGTCAAATTTATC+AGG + chr2.3:59844230-59844249 None:intergenic 25.0%
! TATATATATGTTTCAATCGC+AGG - chr2.3:59844032-59844051 MS.gene74560:CDS 25.0%
! TCTAATCTTCAAGTGAAAAA+AGG - chr2.3:59844254-59844273 MS.gene74560:intron 25.0%
!! CAAGTTTTACTATAAAAGGA+TGG + chr2.3:59843240-59843259 None:intergenic 25.0%
!! TGGACAAGTTTTACTATAAA+AGG + chr2.3:59843244-59843263 None:intergenic 25.0%
!!! AGATTTTTTTGAGAGCTTTA+AGG - chr2.3:59844361-59844380 MS.gene74560:CDS 25.0%
AACTCAAAATCAGTAGAACT+AGG - chr2.3:59844461-59844480 MS.gene74560:CDS 30.0%
AAGGCTGCTATGATTAAAAT+GGG - chr2.3:59844380-59844399 MS.gene74560:CDS 30.0%
AAGTAAGTTGTGTTAAGAGT+TGG + chr2.3:59844137-59844156 None:intergenic 30.0%
ATACTTGAACAAAACAGTCA+TGG + chr2.3:59843353-59843372 None:intergenic 30.0%
TAAGGCTGCTATGATTAAAA+TGG - chr2.3:59844379-59844398 MS.gene74560:CDS 30.0%
TCAAATTTATCAGGAGTAGT+TGG + chr2.3:59844221-59844240 None:intergenic 30.0%
! ATTGTTTTCTAATCTCTCCT+TGG + chr2.3:59844430-59844449 None:intergenic 30.0%
!!! GATTTTGATTAGCAAGTGAT+TGG + chr2.3:59843828-59843847 None:intergenic 30.0%
AAACCATCTCTTCTTCCTAA+TGG + chr2.3:59843796-59843815 None:intergenic 35.0%
AAACGGTTCTTATGACTTCA+CGG + chr2.3:59843284-59843303 None:intergenic 35.0%
AATCAAAACAGCAGTGGAAA+AGG - chr2.3:59843564-59843583 MS.gene74560:CDS 35.0%
ACGAGTATCTGTCTTAGAAA+CGG + chr2.3:59843301-59843320 None:intergenic 35.0%
AGTTGGATCAAAACTTGCAA+GGG + chr2.3:59844204-59844223 None:intergenic 35.0%
AGTTGTGCATTTGAAGAGAA+AGG + chr2.3:59843213-59843232 None:intergenic 35.0%
AGTTGTGTTAAGAGTTGGAT+CGG + chr2.3:59844132-59844151 None:intergenic 35.0%
ATGTGATCTATGATTGGAAC+AGG - chr2.3:59843438-59843457 MS.gene74560:CDS 35.0%
CAGAAACTCATTAAGAGGTT+TGG - chr2.3:59843528-59843547 MS.gene74560:CDS 35.0%
CCAAACAGAAACTCATTAAG+AGG - chr2.3:59843523-59843542 MS.gene74560:CDS 35.0%
CCTCTTAATGAGTTTCTGTT+TGG + chr2.3:59843526-59843545 None:intergenic 35.0%
CTAATGGAACTTTCCAATCA+GGG + chr2.3:59843780-59843799 None:intergenic 35.0%
GAAATATTGGTGTGTTAACC+GGG - chr2.3:59844402-59844421 MS.gene74560:CDS 35.0%
GAATCAAATCAAAACAGCAG+TGG - chr2.3:59843558-59843577 MS.gene74560:CDS 35.0%
GATGAAATCAAACAGTCTCA+AGG - chr2.3:59843754-59843773 MS.gene74560:CDS 35.0%
GGAAATATTGGTGTGTTAAC+CGG - chr2.3:59844401-59844420 MS.gene74560:CDS 35.0%
TAGTTGGATCAAAACTTGCA+AGG + chr2.3:59844205-59844224 None:intergenic 35.0%
TGCTGAATTATCATCTACAC+TGG - chr2.3:59843630-59843649 MS.gene74560:intron 35.0%
TGTGATCTATGATTGGAACA+GGG - chr2.3:59843439-59843458 MS.gene74560:CDS 35.0%
TTGTACAACTTCAGCAATAC+AGG - chr2.3:59844101-59844120 MS.gene74560:CDS 35.0%
! AGTTGATCCAATGAGTTGAA+AGG + chr2.3:59843859-59843878 None:intergenic 35.0%
!! AATAGCTTTGTGCTGTATTG+TGG - chr2.3:59843170-59843189 MS.gene74560:CDS 35.0%
CAACTAGATCAGTAGTACTG+AGG + chr2.3:59843906-59843925 None:intergenic 40.0%
CCTAATGGAACTTTCCAATC+AGG + chr2.3:59843781-59843800 None:intergenic 40.0%
CCTGATTGGAAAGTTCCATT+AGG - chr2.3:59843778-59843797 MS.gene74560:CDS 40.0%
CGGACAATGGAACTAACATT+TGG + chr2.3:59843264-59843283 None:intergenic 40.0%
GTTCCATTAGGAAGAAGAGA+TGG - chr2.3:59843790-59843809 MS.gene74560:CDS 40.0%
GTTGGATCAAAACTTGCAAG+GGG + chr2.3:59844203-59844222 None:intergenic 40.0%
GTTGTGTTAAGAGTTGGATC+GGG + chr2.3:59844131-59844150 None:intergenic 40.0%
TACTGATCTAGTTGCACTCT+CGG - chr2.3:59843912-59843931 MS.gene74560:intron 40.0%
TCAGCACAAGAAACTGTGTT+AGG + chr2.3:59843595-59843614 None:intergenic 40.0%
TCTTATGACTTCACGGACAA+TGG + chr2.3:59843277-59843296 None:intergenic 40.0%
TTGCGCAATATATGTCCCAA+TGG - chr2.3:59844164-59844183 MS.gene74560:CDS 40.0%
!! GTATGCTTGCTAGTCTTGTT+AGG - chr2.3:59843319-59843338 MS.gene74560:CDS 40.0%
AATGTTGCCTCAACAGAGGA+GGG - chr2.3:59844491-59844510 MS.gene74560:CDS 45.0%
ACTGATCTAGTTGCACTCTC+GGG - chr2.3:59843913-59843932 MS.gene74560:intron 45.0%
ATCGCAGGTGCTCATACATT+TGG - chr2.3:59844047-59844066 MS.gene74560:CDS 45.0%
CAAGAGTTGTTCTCAACGTC+TGG - chr2.3:59844293-59844312 MS.gene74560:intron 45.0%
CGCAATATATGTCCCAATGG+TGG - chr2.3:59844167-59844186 MS.gene74560:CDS 45.0%
TCCAGCTCCTTTCAACTCAT+TGG - chr2.3:59843849-59843868 MS.gene74560:CDS 45.0%
TCTAATCTCTCCTTGGTTCC+CGG + chr2.3:59844423-59844442 None:intergenic 45.0%
TGCTGTATTGTGGCTGTGTT+TGG - chr2.3:59843180-59843199 MS.gene74560:CDS 45.0%
TGTCAATGTTGCCTCAACAG+AGG - chr2.3:59844487-59844506 MS.gene74560:CDS 45.0%
! AAAGCTGCATTTGCTGCTCA+AGG - chr2.3:59843880-59843899 MS.gene74560:CDS 45.0%
! TCCAATGAGTTGAAAGGAGC+TGG + chr2.3:59843853-59843872 None:intergenic 45.0%
AAACTTGCAAGGGGAGTTCC+AGG + chr2.3:59844194-59844213 None:intergenic 50.0%
AACAGTCTCAAGGCCCTGAT+TGG - chr2.3:59843764-59843783 MS.gene74560:CDS 50.0%
AACCATACCCTCCTCTGTTG+AGG + chr2.3:59844501-59844520 None:intergenic 50.0%
CAATGTTGCCTCAACAGAGG+AGG - chr2.3:59844490-59844509 MS.gene74560:CDS 50.0%
!! ATATGTCCCAATGGTGGACC+TGG - chr2.3:59844173-59844192 MS.gene74560:CDS 50.0%
GGAGTTCCAGGTCCACCATT+GGG + chr2.3:59844182-59844201 None:intergenic 55.0%
GGTGTGTTAACCGGGAACCA+AGG - chr2.3:59844410-59844429 MS.gene74560:CDS 55.0%
TGCCTCAACAGAGGAGGGTA+TGG - chr2.3:59844496-59844515 MS.gene74560:CDS 55.0%
GGGAGTTCCAGGTCCACCAT+TGG + chr2.3:59844183-59844202 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 59843147 59844532 59843147 ID=MS.gene74560
chr2.3 mRNA 59843147 59844532 59843147 ID=MS.gene74560.t1;Parent=MS.gene74560
chr2.3 exon 59844311 59844532 59844311 ID=MS.gene74560.t1.exon1;Parent=MS.gene74560.t1
chr2.3 CDS 59844311 59844532 59844311 ID=cds.MS.gene74560.t1;Parent=MS.gene74560.t1
chr2.3 exon 59844028 59844219 59844028 ID=MS.gene74560.t1.exon2;Parent=MS.gene74560.t1
chr2.3 CDS 59844028 59844219 59844028 ID=cds.MS.gene74560.t1;Parent=MS.gene74560.t1
chr2.3 exon 59843745 59843910 59843745 ID=MS.gene74560.t1.exon3;Parent=MS.gene74560.t1
chr2.3 CDS 59843745 59843910 59843745 ID=cds.MS.gene74560.t1;Parent=MS.gene74560.t1
chr2.3 exon 59843147 59843625 59843147 ID=MS.gene74560.t1.exon4;Parent=MS.gene74560.t1
chr2.3 CDS 59843147 59843625 59843147 ID=cds.MS.gene74560.t1;Parent=MS.gene74560.t1
Gene Sequence

>MS.gene74560

ATGAACTCTCTTCGTGCTGTAGCAATAGCTTTGTGCTGTATTGTGGCTGTGTTTGGAGTGTTACCTTTCTCTTCAAATGCACAACTTAATCCATCCTTTTATAGTAAAACTTGTCCAAATGTTAGTTCCATTGTCCGTGAAGTCATAAGAACCGTTTCTAAGACAGATACTCGTATGCTTGCTAGTCTTGTTAGGCTTCACTTCCATGACTGTTTTGTTCAAGTATGTATACTTTACCTTCTACTTGTAAATGATTTGTATTATGCTATTGTTATAATCATAATGTAAATTATGTGATCTATGATTGGAACAGGGTTGTGATGCATCAGTTTTGTTGAATAACACTGCTACTATTGTGAGTGAACAAGATGCTTTTCCAAACAGAAACTCATTAAGAGGTTTGGATGTTGTGAATCAAATCAAAACAGCAGTGGAAAAGGCTTGTCCTAACACAGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTGAATTATCATCTACACTGGTATGCATTCCTCATCCTATATAGTTATAGTATCTTCATTCACCATATTGAATTTTAAATGTAGTTTCTGATTTATGATTTATCATTATGTTTTTGTTTTGTGATGAAATCAAACAGTCTCAAGGCCCTGATTGGAAAGTTCCATTAGGAAGAAGAGATGGTTTAACAGCAAACCAATCACTTGCTAATCAAAATCTTCCAGCTCCTTTCAACTCATTGGATCAACTCAAAGCTGCATTTGCTGCTCAAGGCCTCAGTACTACTGATCTAGTTGCACTCTCGGGTATGTAACATTTTTAAAGTTTTTGTTTAAAAATTTCTAATTGGTCGTTACAATGATGACGCGAATGTTACAATAATAATATGTATGATTATTGATCTATATATATGTTTCAATCGCAGGTGCTCATACATTTGGAAGAGCTCATTGCTCTTTATTTGTTAGTCGATTGTACAACTTCAGCAATACAGGAAATCCCGATCCAACTCTTAACACAACTTACTTACAACAATTGCGCAATATATGTCCCAATGGTGGACCTGGAACTCCCCTTGCAAGTTTTGATCCAACTACTCCTGATAAATTTGACAACAACTATTACTCTAATCTTCAAGTGAAAAAAGGTTTGCTTCAAAGTGATCAAGAGTTGTTCTCAACGTCTGGTGCAGATACCATTAGTATTGTCAACAATTTTGCAACTGATCAAAAAGATTTTTTTGAGAGCTTTAAGGCTGCTATGATTAAAATGGGAAATATTGGTGTGTTAACCGGGAACCAAGGAGAGATTAGAAAACAATGCAACTTTGTTAACTCAAAATCAGTAGAACTAGGTCTTGTCAATGTTGCCTCAACAGAGGAGGGTATGGTTAGCTCAATGTAA
Protein sequence

>MS.gene74560.t1

MNSLRAVAIALCCIVAVFGVLPFSSNAQLNPSFYSKTCPNVSSIVREVIRTVSKTDTRMLASLVRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPNRNSLRGLDVVNQIKTAVEKACPNTVSCADILALAAELSSTLSQGPDWKVPLGRRDGLTANQSLANQNLPAPFNSLDQLKAAFAAQGLSTTDLVALSGAHTFGRAHCSLFVSRLYNFSNTGNPDPTLNTTYLQQLRNICPNGGPGTPLASFDPTTPDKFDNNYYSNLQVKKGLLQSDQELFSTSGADTISIVNNFATDQKDFFESFKAAMIKMGNIGVLTGNQGEIRKQCNFVNSKSVELGLVNVASTEEGMVSSM