AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03133

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03133.t1 MTR_2g029815 98.011 352 7 0 1 352 1 352 0.0 707
MS.gene03133.t1 MTR_2g029820 89.859 355 33 1 1 352 1 355 0.0 652
MS.gene03133.t1 MTR_2g029800 82.436 353 61 1 1 352 1 353 0.0 596
MS.gene03133.t1 MTR_2g029830 84.404 327 51 0 22 348 21 347 0.0 574
MS.gene03133.t1 MTR_2g028980 74.648 355 87 1 1 352 1 355 0.0 543
MS.gene03133.t1 MTR_2g029740 73.521 355 91 2 1 352 1 355 0.0 526
MS.gene03133.t1 MTR_2g029750 71.751 354 98 1 1 352 1 354 0.0 520
MS.gene03133.t1 MTR_2g029850 72.080 351 98 0 1 351 1 351 0.0 514
MS.gene03133.t1 MTR_2g029860 71.186 354 99 3 1 352 1 353 7.96e-180 502
MS.gene03133.t1 MTR_2g029830 85.091 275 41 0 74 348 5 279 8.83e-175 487
MS.gene03133.t1 MTR_2g029910 66.860 344 112 2 10 352 11 353 1.16e-167 471
MS.gene03133.t1 MTR_2g029560 67.055 343 111 1 8 350 3 343 3.75e-164 462
MS.gene03133.t1 MTR_2g029730 65.156 353 114 3 1 352 1 345 2.58e-161 455
MS.gene03133.t1 MTR_7g093370 60.938 320 120 2 16 330 52 371 1.13e-134 389
MS.gene03133.t1 MTR_1g054205 59.295 312 126 1 20 330 15 326 2.45e-133 383
MS.gene03133.t1 MTR_4g125940 52.866 314 144 2 20 331 19 330 1.72e-109 323
MS.gene03133.t1 MTR_5g021060 51.656 302 145 1 29 330 30 330 5.63e-107 317
MS.gene03133.t1 MTR_5g017860 51.475 305 144 3 27 330 25 326 4.59e-106 314
MS.gene03133.t1 MTR_2g040000 48.182 330 159 3 12 331 5 332 4.70e-106 314
MS.gene03133.t1 MTR_8g076820 49.175 303 153 1 29 331 30 331 3.78e-104 309
MS.gene03133.t1 MTR_5g017850 49.836 305 149 3 27 330 25 326 6.09e-104 308
MS.gene03133.t1 MTR_2g084080 47.077 325 163 2 6 330 2 317 9.51e-101 300
MS.gene03133.t1 MTR_3g094650 49.068 322 148 4 12 326 6 318 2.85e-100 299
MS.gene03133.t1 MTR_4g125940 55.435 276 119 2 58 331 2 275 2.10e-99 295
MS.gene03133.t1 MTR_4g029200 50.476 315 145 4 17 330 34 338 2.32e-99 297
MS.gene03133.t1 MTR_2g084000 48.930 327 156 6 6 330 2 319 5.38e-99 296
MS.gene03133.t1 MTR_2g084110 47.152 316 158 2 15 330 11 317 1.82e-98 294
MS.gene03133.t1 MTR_1g022970 48.344 302 156 0 29 330 46 347 8.61e-98 293
MS.gene03133.t1 MTR_3g094670 48.780 328 156 4 1 326 1 318 6.57e-97 290
MS.gene03133.t1 MTR_4g083710 48.607 323 156 4 11 330 9 324 1.21e-96 290
MS.gene03133.t1 MTR_2g084020 46.519 316 161 2 15 330 11 318 1.22e-96 290
MS.gene03133.t1 MTR_3g072190 47.003 317 159 2 14 330 11 318 2.04e-96 289
MS.gene03133.t1 MTR_3g466200 48.287 321 153 5 13 330 10 320 5.47e-96 288
MS.gene03133.t1 MTR_4g029170 47.748 333 159 6 1 330 1 321 2.13e-95 286
MS.gene03133.t1 MTR_7g072510 46.711 304 153 2 27 330 18 312 2.80e-95 286
MS.gene03133.t1 MTR_5g083860 47.896 309 150 3 24 330 26 325 7.18e-95 285
MS.gene03133.t1 MTR_2g084010 46.061 330 166 4 1 330 1 318 9.44e-95 285
MS.gene03133.t1 MTR_3g094630 49.096 332 154 4 1 330 4 322 1.05e-94 285
MS.gene03133.t1 MTR_2g084090 46.835 316 160 2 15 330 11 318 1.35e-94 285
MS.gene03133.t1 MTR_4g029190 48.665 337 151 7 7 330 13 340 1.20e-93 283
MS.gene03133.t1 MTR_4g029180 49.333 300 141 4 33 330 31 321 2.51e-93 281
MS.gene03133.t1 MTR_5g074970 46.605 324 159 5 11 330 13 326 8.35e-93 280
MS.gene03133.t1 MTR_7g072480 47.368 304 151 2 27 330 22 316 1.34e-90 274
MS.gene03133.t1 MTR_4g122640 46.535 303 157 3 29 330 38 336 1.88e-90 275
MS.gene03133.t1 MTR_4g046713 44.272 323 172 4 9 330 11 326 2.69e-90 274
MS.gene03133.t1 MTR_4g074995 46.417 321 149 5 13 330 8 308 7.62e-89 270
MS.gene03133.t1 MTR_1g115900 44.109 331 168 6 9 331 1 322 1.18e-88 270
MS.gene03133.t1 MTR_5g014100 47.195 303 156 2 32 330 29 331 1.22e-88 270
MS.gene03133.t1 MTR_2g088770 44.340 318 171 5 15 330 12 325 1.22e-88 270
MS.gene03133.t1 MTR_2g029880 62.441 213 69 3 139 351 7 208 3.31e-88 264
MS.gene03133.t1 MTR_5g074740 44.308 325 170 4 9 330 5 321 1.19e-87 267
MS.gene03133.t1 MTR_5g049280 43.465 329 171 7 14 331 14 338 1.33e-87 267
MS.gene03133.t1 MTR_7g107520 44.062 320 173 4 11 330 7 320 1.46e-87 266
MS.gene03133.t1 MTR_5g074760 44.688 320 166 4 14 330 10 321 2.08e-87 266
MS.gene03133.t1 MTR_4g114210 44.839 310 159 5 26 330 18 320 2.86e-87 266
MS.gene03133.t1 MTR_5g074710 44.923 325 168 4 9 330 5 321 1.57e-86 264
MS.gene03133.t1 MTR_3g466180 45.779 308 158 2 23 330 25 323 6.55e-86 263
MS.gene03133.t1 MTR_2g008710 45.695 302 153 5 33 330 31 325 2.35e-85 261
MS.gene03133.t1 MTR_7g086820 43.464 306 164 5 27 332 18 314 7.74e-85 259
MS.gene03133.t1 MTR_4g031140 41.667 312 177 3 25 336 24 330 8.76e-85 260
MS.gene03133.t1 MTR_5g074860 44.479 326 165 6 12 329 7 324 1.55e-84 259
MS.gene03133.t1 MTR_4g030890 43.042 309 171 3 24 332 95 398 1.74e-84 262
MS.gene03133.t1 MTR_3g092990 42.633 319 180 2 14 331 11 327 3.29e-84 258
MS.gene03133.t1 MTR_3g467600 46.602 309 155 4 25 330 23 324 1.25e-83 256
MS.gene03133.t1 MTR_4g074990 44.272 323 154 4 11 330 6 305 2.30e-83 255
MS.gene03133.t1 MTR_6g043240 46.296 324 151 9 29 348 42 346 2.61e-82 254
MS.gene03133.t1 MTR_5g022870 41.994 331 170 9 6 330 2 316 3.25e-81 250
MS.gene03133.t1 MTR_1g101830 43.791 306 166 4 25 330 23 322 5.71e-81 250
MS.gene03133.t1 MTR_7g026990 41.722 302 166 4 30 331 32 323 9.31e-80 247
MS.gene03133.t1 MTR_8g075100 43.087 311 161 7 24 330 21 319 1.15e-79 246
MS.gene03133.t1 MTR_4g133800 43.624 298 157 6 34 330 46 333 1.29e-79 247
MS.gene03133.t1 MTR_5g016010 41.441 333 186 5 1 329 1 328 1.84e-79 246
MS.gene03133.t1 MTR_1g009750 45.277 307 160 5 28 330 26 328 2.17e-79 246
MS.gene03133.t1 MTR_1g038680 43.564 303 163 6 33 330 33 332 9.06e-79 244
MS.gene03133.t1 MTR_1g086320 41.317 334 188 5 1 330 4 333 1.07e-78 244
MS.gene03133.t1 MTR_4g087965 43.279 305 166 5 28 327 41 343 1.27e-78 244
MS.gene03133.t1 MTR_3g072190 48.263 259 125 2 72 330 2 251 3.38e-78 240
MS.gene03133.t1 MTR_6g043280 43.598 328 156 9 20 332 21 334 4.10e-78 243
MS.gene03133.t1 MTR_1g086490 41.056 341 186 5 1 330 4 340 6.83e-78 243
MS.gene03133.t1 MTR_6g027440 42.633 319 170 7 14 330 7 314 1.33e-77 241
MS.gene03133.t1 MTR_2g437770 43.092 304 161 6 29 331 50 342 1.78e-77 241
MS.gene03133.t1 MTR_4g127670 45.545 303 155 5 28 326 23 319 3.72e-77 240
MS.gene03133.t1 MTR_7g029030 44.807 337 162 11 1 330 1 320 6.57e-76 237
MS.gene03133.t1 MTR_4g095450 42.508 327 174 6 5 326 3 320 1.20e-75 236
MS.gene03133.t1 MTR_4g074980 43.831 308 141 6 23 330 19 294 1.22e-75 235
MS.gene03133.t1 MTR_1g025980 42.623 305 160 6 29 329 24 317 4.17e-73 229
MS.gene03133.t1 MTR_7g086870 41.694 307 163 7 27 331 20 312 4.71e-73 229
MS.gene03133.t1 MTR_4g074980 47.718 241 117 3 23 260 19 253 2.93e-72 225
MS.gene03133.t1 MTR_4g132490 39.264 326 188 6 9 330 8 327 7.11e-72 226
MS.gene03133.t1 MTR_1g090760 41.456 316 175 6 21 330 19 330 7.68e-72 227
MS.gene03133.t1 MTR_2g008160 40.836 311 172 6 25 330 20 323 1.82e-71 225
MS.gene03133.t1 MTR_3g092990 40.125 319 177 3 14 331 11 316 1.95e-71 225
MS.gene03133.t1 MTR_1g077000 38.323 334 189 7 1 330 7 327 1.35e-70 223
MS.gene03133.t1 MTR_6g043460 42.000 300 161 6 29 326 36 324 4.17e-70 223
MS.gene03133.t1 MTR_0155s0040 39.542 306 170 6 26 330 24 315 7.34e-70 221
MS.gene03133.t1 MTR_2g099175 38.961 308 176 6 28 330 35 335 1.02e-69 221
MS.gene03133.t1 MTR_1g009750 41.694 307 154 6 28 330 26 311 1.54e-68 218
MS.gene03133.t1 MTR_5g033470 39.103 312 177 7 27 330 71 377 1.12e-67 218
MS.gene03133.t1 MTR_8g062780 38.387 310 183 4 25 330 19 324 8.48e-65 208
MS.gene03133.t1 MTR_2g008730 38.820 322 161 6 14 330 11 301 2.82e-64 206
MS.gene03133.t1 MTR_2g067440 35.068 365 189 8 3 331 36 388 5.67e-64 208
MS.gene03133.t1 MTR_5g074860 38.037 326 147 5 12 329 7 285 6.11e-64 205
MS.gene03133.t1 MTR_3g105790 38.535 314 185 3 15 326 11 318 1.96e-62 202
MS.gene03133.t1 MTR_0286s0010 38.387 310 182 6 25 330 30 334 1.05e-61 201
MS.gene03133.t1 MTR_6g008075 38.387 310 182 6 25 330 30 334 1.05e-61 201
MS.gene03133.t1 MTR_2g077990 37.612 335 170 9 25 326 74 402 3.35e-61 201
MS.gene03133.t1 MTR_2g078610 37.313 335 171 9 25 326 74 402 3.53e-61 201
MS.gene03133.t1 MTR_1g066710 38.188 309 178 5 27 331 25 324 1.19e-60 197
MS.gene03133.t1 MTR_1g066380 37.013 308 183 4 27 331 25 324 1.44e-58 192
MS.gene03133.t1 MTR_4g132110 36.482 307 182 5 33 335 36 333 2.86e-57 189
MS.gene03133.t1 MTR_1g066640 37.013 308 183 4 27 331 25 324 6.57e-57 188
MS.gene03133.t1 MTR_4g132110 36.859 312 179 7 33 335 36 338 1.03e-56 188
MS.gene03133.t1 MTR_2g078280 37.231 325 165 9 25 316 74 392 1.46e-56 189
MS.gene03133.t1 MTR_1g066680 36.688 308 183 5 27 331 25 323 6.23e-56 185
MS.gene03133.t1 MTR_0147s0010 34.568 324 176 5 26 329 74 381 1.53e-55 186
MS.gene03133.t1 MTR_2g067450 37.540 309 181 7 25 329 9 309 3.15e-55 183
MS.gene03133.t1 MTR_2g008160 36.013 311 152 6 25 330 20 288 4.42e-55 182
MS.gene03133.t1 MTR_2g008160 45.506 178 93 3 25 202 20 193 1.39e-47 160
MS.gene03133.t1 MTR_3g072210 47.644 191 91 4 141 330 56 238 2.23e-47 160
MS.gene03133.t1 MTR_1g066380 37.786 262 152 4 73 331 3 256 5.91e-47 160
MS.gene03133.t1 MTR_3g105790 39.241 237 140 2 96 330 12 246 1.54e-44 153
MS.gene03133.t1 MTR_5g074700 39.655 232 115 5 102 330 5 214 1.99e-43 149
MS.gene03133.t1 MTR_7g072490 38.153 249 91 4 75 323 2 187 3.85e-41 143
MS.gene03133.t1 MTR_3g072260 55.238 105 47 0 28 132 25 129 3.65e-35 125
MS.gene03133.t1 MTR_2g029930 56.034 116 23 3 11 112 1 102 5.19e-32 116
MS.gene03133.t1 MTR_5g058120 40.491 163 84 3 164 326 6 155 1.33e-28 112
MS.gene03133.t1 MTR_2g077980 30.605 281 150 11 91 331 11 286 1.53e-27 109
MS.gene03133.t1 MTR_2g078560 31.140 228 124 5 135 331 96 321 3.65e-26 107
MS.gene03133.t1 MTR_7g086790 33.679 193 104 5 76 267 17 186 9.61e-24 97.1
MS.gene03133.t1 MTR_3g462850 38.356 146 79 6 193 331 9 150 8.11e-22 90.9
MS.gene03133.t1 MTR_1g089005 43.243 111 56 2 29 133 15 124 8.93e-20 85.5
MS.gene03133.t1 MTR_1g098320 49.398 83 40 1 251 333 47 127 1.23e-18 81.6
MS.gene03133.t1 MTR_6g048160 56.338 71 27 2 68 138 22 88 2.46e-18 79.3
MS.gene03133.t1 MTR_4g114220 50.704 71 25 2 63 133 37 97 2.43e-16 75.5
MS.gene03133.t1 MTR_4g012865 46.479 71 38 0 26 96 74 144 2.60e-16 75.5
MS.gene03133.t1 MTR_5g074770 39.796 98 53 2 232 329 17 108 6.07e-15 70.5
MS.gene03133.t1 MTR_7g107500 41.414 99 54 3 232 330 3 97 7.54e-15 70.1
MS.gene03133.t1 MTR_7g086810 31.405 121 57 1 27 147 4 98 2.13e-13 69.3
MS.gene03133.t1 MTR_4g031040 28.000 175 82 3 88 262 1 131 4.34e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03133.t1 AT5G06730 54.706 340 154 0 11 350 15 354 1.52e-133 385
MS.gene03133.t1 AT5G06720 57.895 323 131 2 9 330 15 333 3.09e-133 384
MS.gene03133.t1 AT2G38380 55.927 329 138 2 25 352 27 349 1.83e-130 377
MS.gene03133.t1 AT2G38390 54.407 329 143 2 25 352 27 349 2.60e-129 374
MS.gene03133.t1 AT3G49120 56.364 330 138 3 25 352 28 353 6.04e-127 368
MS.gene03133.t1 AT3G32980 56.061 330 139 3 25 352 27 352 7.41e-125 363
MS.gene03133.t1 AT3G49110 55.758 330 140 3 25 352 29 354 2.04e-123 359
MS.gene03133.t1 AT4G08770 55.625 320 140 2 25 342 20 339 4.40e-123 358
MS.gene03133.t1 AT4G08780 54.062 320 145 2 25 342 20 339 1.18e-119 349
MS.gene03133.t1 AT5G19880 52.665 319 145 3 15 330 14 329 2.52e-115 338
MS.gene03133.t1 AT5G19890 53.268 306 135 4 27 330 28 327 1.18e-107 318
MS.gene03133.t1 AT2G18140 48.308 325 163 2 6 330 16 335 1.46e-106 316
MS.gene03133.t1 AT4G36430 50.649 308 151 1 24 331 25 331 2.56e-106 315
MS.gene03133.t1 AT5G66390 49.351 308 155 1 23 330 27 333 1.23e-105 313
MS.gene03133.t1 AT2G18150 50.329 304 150 1 27 330 34 336 5.83e-105 311
MS.gene03133.t1 AT1G14550 50.820 305 142 4 27 330 24 321 7.24e-102 303
MS.gene03133.t1 AT5G05340 49.673 306 143 3 27 330 28 324 9.44e-101 300
MS.gene03133.t1 AT1G44970 49.026 308 155 1 23 330 41 346 9.73e-99 296
MS.gene03133.t1 AT3G50990 45.104 337 177 2 1 330 6 341 1.12e-97 293
MS.gene03133.t1 AT1G14540 48.447 322 159 3 9 330 1 315 1.31e-97 292
MS.gene03133.t1 AT1G49570 46.885 305 157 3 27 328 46 348 1.26e-96 291
MS.gene03133.t1 AT4G16270 47.525 303 154 4 29 330 50 348 2.10e-91 277
MS.gene03133.t1 AT1G68850 45.455 308 162 5 29 331 30 336 7.46e-89 270
MS.gene03133.t1 AT1G71695 46.440 323 155 7 29 348 44 351 4.27e-88 269
MS.gene03133.t1 AT5G58400 45.593 329 163 5 5 330 10 325 1.70e-87 266
MS.gene03133.t1 AT2G41480 43.769 329 166 7 12 330 9 328 9.69e-87 265
MS.gene03133.t1 AT2G22420 42.628 312 174 3 29 340 23 329 4.32e-86 263
MS.gene03133.t1 AT5G58390 45.570 316 160 4 14 326 6 312 7.87e-86 262
MS.gene03133.t1 AT2G35380 48.013 302 153 3 33 330 34 335 8.20e-86 263
MS.gene03133.t1 AT2G18980 46.605 324 159 7 13 330 8 323 2.60e-85 261
MS.gene03133.t1 AT3G03670 43.750 304 168 2 27 330 21 321 3.79e-84 258
MS.gene03133.t1 AT1G05260 41.742 333 185 7 1 331 1 326 1.64e-83 256
MS.gene03133.t1 AT3G21770 43.226 310 170 5 24 331 24 329 2.22e-83 256
MS.gene03133.t1 AT4G11290 41.231 325 186 4 8 330 5 326 2.65e-83 256
MS.gene03133.t1 AT5G14130 44.340 318 168 5 18 330 17 330 2.66e-83 256
MS.gene03133.t1 AT5G14130 44.340 318 168 5 18 330 58 371 6.19e-83 256
MS.gene03133.t1 AT4G30170 45.307 309 158 5 26 330 24 325 8.54e-83 254
MS.gene03133.t1 AT5G15180 41.694 307 174 5 25 330 27 329 3.47e-82 253
MS.gene03133.t1 AT4G37530 45.484 310 162 5 25 330 23 329 1.07e-81 252
MS.gene03133.t1 AT5G51890 44.099 322 164 8 14 330 12 322 3.76e-81 250
MS.gene03133.t1 AT5G64120 42.462 325 169 7 12 330 16 328 6.74e-81 250
MS.gene03133.t1 AT5G17820 40.881 318 175 6 13 330 9 313 2.53e-80 248
MS.gene03133.t1 AT3G01190 42.006 319 177 7 14 330 9 321 7.54e-80 247
MS.gene03133.t1 AT5G17820 40.881 318 175 6 13 330 62 366 3.92e-79 246
MS.gene03133.t1 AT1G05240 43.689 309 158 7 29 330 26 325 4.66e-79 245
MS.gene03133.t1 AT1G05250 43.689 309 158 7 29 330 26 325 4.66e-79 245
MS.gene03133.t1 AT4G25980 41.284 327 177 6 9 330 10 326 9.20e-79 244
MS.gene03133.t1 AT3G49960 42.025 326 179 5 9 330 10 329 3.07e-78 243
MS.gene03133.t1 AT5G67400 41.104 326 185 4 9 330 7 329 3.49e-78 243
MS.gene03133.t1 AT5G39580 41.692 331 177 7 1 330 4 319 2.52e-76 238
MS.gene03133.t1 AT4G37520 42.208 308 171 5 27 330 25 329 2.21e-74 233
MS.gene03133.t1 AT4G37520 41.883 308 169 6 27 330 25 326 7.84e-73 229
MS.gene03133.t1 AT5G42180 40.506 316 180 5 14 329 9 316 1.33e-72 228
MS.gene03133.t1 AT5G64110 44.371 302 155 7 33 330 38 330 6.22e-72 227
MS.gene03133.t1 AT2G39040 42.173 313 166 9 27 330 44 350 1.02e-71 227
MS.gene03133.t1 AT4G37530 47.674 258 130 4 25 278 23 279 5.15e-71 223
MS.gene03133.t1 AT5G64100 42.193 301 161 7 33 330 41 331 6.16e-71 224
MS.gene03133.t1 AT2G24800 41.234 308 170 5 27 330 29 329 1.92e-70 223
MS.gene03133.t1 AT4G31760 39.228 311 179 4 23 330 23 326 3.15e-70 223
MS.gene03133.t1 AT5G40150 40.952 315 177 4 18 330 21 328 5.54e-70 222
MS.gene03133.t1 AT4G33420 38.226 327 188 7 4 330 13 325 1.81e-69 220
MS.gene03133.t1 AT4G26010 40.308 325 169 9 13 330 3 309 4.37e-69 219
MS.gene03133.t1 AT5G24070 38.209 335 192 7 4 331 10 336 5.76e-69 219
MS.gene03133.t1 AT4G33420 38.226 327 188 7 4 330 60 372 5.96e-69 221
MS.gene03133.t1 AT4G26010 40.308 325 169 9 13 330 31 337 6.53e-69 219
MS.gene03133.t1 AT2G34060 39.610 308 177 6 26 327 39 343 9.97e-69 219
MS.gene03133.t1 AT4G17690 40.129 309 174 5 29 334 26 326 1.46e-68 218
MS.gene03133.t1 AT1G77100 39.818 329 182 7 7 330 2 319 2.58e-68 217
MS.gene03133.t1 AT3G28200 39.806 309 176 5 24 330 16 316 1.14e-67 216
MS.gene03133.t1 AT5G47000 39.550 311 178 5 27 334 31 334 1.25e-67 216
MS.gene03133.t1 AT1G24110 38.554 332 183 9 8 330 3 322 9.40e-67 213
MS.gene03133.t1 AT2G43480 37.910 335 183 9 13 330 9 335 3.38e-66 212
MS.gene03133.t1 AT4G33870 34.226 336 183 5 27 327 66 398 6.43e-66 214
MS.gene03133.t1 AT1G30870 39.032 310 172 7 29 333 51 348 4.16e-65 210
MS.gene03133.t1 AT1G34510 39.009 323 179 7 10 330 3 309 6.10e-64 206
MS.gene03133.t1 AT2G35380 46.964 247 127 3 88 330 1 247 4.15e-63 201
MS.gene03133.t1 AT5G22410 37.377 305 177 7 27 326 26 321 2.55e-62 202
MS.gene03133.t1 AT4G21960 37.171 304 178 5 32 331 34 328 2.63e-59 194
MS.gene03133.t1 AT3G17070 39.210 329 180 10 11 330 22 339 1.71e-58 192
MS.gene03133.t1 AT2G37130 35.599 309 187 5 26 330 27 327 4.09e-54 181
MS.gene03133.t1 AT2G37130 35.762 302 182 5 33 330 3 296 4.44e-53 177
MS.gene03133.t1 AT4G25980 44.286 210 104 5 9 213 55 256 1.55e-50 170
MS.gene03133.t1 AT3G17070 38.662 269 146 10 71 330 18 276 1.23e-42 149
MS.gene03133.t1 AT5G39580 40.336 238 120 6 1 231 4 226 4.49e-42 147
MS.gene03133.t1 AT2G24800 41.860 172 96 1 27 198 29 196 2.73e-37 134
MS.gene03133.t1 AT4G08390 26.332 319 164 12 27 314 83 361 4.01e-14 73.2
MS.gene03133.t1 AT1G77490 27.099 262 153 9 63 313 106 340 4.44e-14 73.2
MS.gene03133.t1 AT4G08390 26.332 319 164 12 27 314 84 362 4.51e-14 73.2
MS.gene03133.t1 AT4G08390 26.332 319 164 12 27 314 84 362 4.51e-14 73.2
MS.gene03133.t1 AT4G08390 26.332 319 164 12 27 314 84 362 4.51e-14 73.2
MS.gene03133.t1 AT1G77490 26.996 263 154 9 63 314 106 341 5.13e-14 73.2
MS.gene03133.t1 AT3G09640 25.581 215 114 7 103 313 74 246 7.24e-13 68.2
MS.gene03133.t1 AT3G09640 25.581 215 114 7 103 313 74 246 7.24e-13 68.2
MS.gene03133.t1 AT3G42570 32.407 108 71 2 90 196 43 149 2.87e-11 61.6

Find 62 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTGCTATGATTAAAA+TGG 0.162076 2.1:-61265017 MS.gene03133:CDS
GGAAATATTGGTGTGTTAAC+CGG 0.297989 2.1:-61264995 MS.gene03133:CDS
TCCAGCTCCTTTCAACTCAT+TGG 0.300263 2.1:-61265536 MS.gene03133:CDS
TCTAATCTCTCCTTGGTTCC+CGG 0.308228 2.1:+61264976 None:intergenic
CCTCTTAATGAGTTTCTGTT+TGG 0.310696 2.1:+61265855 None:intergenic
AAACCATCTCTTCTTCCTAA+TGG 0.312841 2.1:+61265592 None:intergenic
TGTTCTATTGTGGCTGTGTT+TGG 0.317055 2.1:-61266193 MS.gene03133:CDS
TAGTTCTTGTCAAATTTATC+AGG 0.341189 2.1:+61265169 None:intergenic
GTATGCTTGCTAGTCTTGTT+AGG 0.342382 2.1:-61266054 MS.gene03133:CDS
CAGAAACTCATTAAGAGGTT+TGG 0.342785 2.1:-61265850 MS.gene03133:CDS
ATCGCAGGTGCTCATACATT+TGG 0.352412 2.1:-61265349 MS.gene03133:intron
CCAAACAGAAACTCATTAAG+AGG 0.372095 2.1:-61265855 MS.gene03133:CDS
AAACGGTTCTTATGACTTCC+CGG 0.381504 2.1:+61266092 None:intergenic
TCAAATTTATCAGGAGTAGT+TGG 0.385860 2.1:+61265178 None:intergenic
ATGATTAAAATGGGAAATAT+TGG 0.387468 2.1:-61265007 MS.gene03133:CDS
AAAATTGTTGACAATACTAA+TGG 0.398283 2.1:+61265072 None:intergenic
CGGACAATGGAGCTAACATT+TGG 0.407796 2.1:+61266112 None:intergenic
CAAATGTTAGCTCCATTGTC+CGG 0.425051 2.1:-61266111 MS.gene03133:CDS
CCAGATTGGAAGGTTCCATT+AGG 0.435644 2.1:-61265607 MS.gene03133:CDS
AAACTCGCAAGGGGAGTTCC+AGG 0.440371 2.1:+61265205 None:intergenic
CCTAATGGAACCTTCCAATC+TGG 0.441332 2.1:+61265607 None:intergenic
TTGTACAACTTCAGCAATAC+AGG 0.450663 2.1:-61265295 MS.gene03133:CDS
AATAGCTTTGTGTTCTATTG+TGG 0.454114 2.1:-61266203 MS.gene03133:CDS
AATCAAAACAGCTGTGGAAA+AGG 0.458727 2.1:-61265814 MS.gene03133:CDS
AACAGTCTCAAGGTCCAGAT+TGG 0.461046 2.1:-61265621 MS.gene03133:intron
AAGGCTGCTATGATTAAAAT+GGG 0.470087 2.1:-61265016 MS.gene03133:CDS
TACTGATCTAGTTGCACTCT+CGG 0.473292 2.1:-61265473 MS.gene03133:CDS
TCAGCACAAGAAACAGTGTT+AGG 0.474603 2.1:+61265786 None:intergenic
AGCTGTGCATTTGAAGAGAA+AGG 0.480057 2.1:+61266163 None:intergenic
TCCAATGAGTTGAAAGGAGC+TGG 0.482187 2.1:+61265535 None:intergenic
ATATGTCCCAATGGTGGACC+TGG 0.507847 2.1:-61265223 MS.gene03133:CDS
GGAGTTCCAGGTCCACCATT+GGG 0.508361 2.1:+61265217 None:intergenic
GAAATATTGGTGTGTTAACC+GGG 0.517789 2.1:-61264994 MS.gene03133:CDS
TGCCTCAACAGAGGAGGGTA+TGG 0.518844 2.1:-61264900 MS.gene03133:CDS
GGGAGTTCCAGGTCCACCAT+TGG 0.527464 2.1:+61265216 None:intergenic
TCTTATGACTTCCCGGACAA+TGG 0.536420 2.1:+61266099 None:intergenic
AGTTGATCCAATGAGTTGAA+AGG 0.537741 2.1:+61265529 None:intergenic
AAATGTTAGCTCCATTGTCC+GGG 0.538924 2.1:-61266110 MS.gene03133:CDS
AAGTAAGTCGTGTTAAGAGT+TGG 0.540699 2.1:+61265262 None:intergenic
AAAGCTGCATTTGCTGCTCA+AGG 0.545185 2.1:-61265505 MS.gene03133:CDS
AGTCGTGTTAAGAGTTGGAT+CGG 0.546024 2.1:+61265267 None:intergenic
GTCGTGTTAAGAGTTGGATC+GGG 0.548387 2.1:+61265268 None:intergenic
CGCAATATATGTCCCAATGG+TGG 0.550346 2.1:-61265229 MS.gene03133:CDS
GTCTCAAGGTCCAGATTGGA+AGG 0.564908 2.1:-61265617 MS.gene03133:CDS
ACTGATCTAGTTGCACTCTC+GGG 0.569804 2.1:-61265472 MS.gene03133:intron
ACGAGTGTCTGTCTTAGAAA+CGG 0.572581 2.1:+61266075 None:intergenic
ATACTTGAACAAAACAGTCA+TGG 0.583464 2.1:+61266023 None:intergenic
TAGTTGGATCAAAACTCGCA+AGG 0.583580 2.1:+61265194 None:intergenic
AACTCAAAATCAGTAGAACT+AGG 0.583865 2.1:-61264935 MS.gene03133:CDS
GTTCCATTAGGAAGAAGAGA+TGG 0.584332 2.1:-61265595 MS.gene03133:CDS
CAATGTTGCCTCAACAGAGG+AGG 0.587955 2.1:-61264906 MS.gene03133:CDS
AACCATACCCTCCTCTGTTG+AGG 0.590356 2.1:+61264898 None:intergenic
AGTTGGATCAAAACTCGCAA+GGG 0.596170 2.1:+61265195 None:intergenic
GATGAAATCAAACAGTCTCA+AGG 0.602198 2.1:-61265631 MS.gene03133:intron
GAATCAAATCAAAACAGCTG+TGG 0.608984 2.1:-61265820 MS.gene03133:CDS
TTGCGCAATATATGTCCCAA+TGG 0.625828 2.1:-61265232 MS.gene03133:CDS
AATGTTGCCTCAACAGAGGA+GGG 0.631884 2.1:-61264905 MS.gene03133:CDS
GGTGTGTTAACCGGGAACCA+AGG 0.643371 2.1:-61264986 MS.gene03133:CDS
TGCTGAATTATCATCTACAC+TGG 0.647562 2.1:-61265748 MS.gene03133:intron
GTTGGATCAAAACTCGCAAG+GGG 0.674515 2.1:+61265196 None:intergenic
TGTCAATGTTGCCTCAACAG+AGG 0.676561 2.1:-61264909 MS.gene03133:CDS
CAACTAGATCAGTAGTACTG+AGG 0.702013 2.1:+61265482 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTTAAAAATTTCTAAT+TGG - chr2.1:61265674-61265693 MS.gene03133:intron 10.0%
!!! ACTACATTTAAAATTCAATA+TGG + chr2.1:61265431-61265450 None:intergenic 15.0%
!! AAAATTGTTGACAATACTAA+TGG + chr2.1:61266043-61266062 None:intergenic 20.0%
!! ATGATTAAAATGGGAAATAT+TGG - chr2.1:61266105-61266124 MS.gene03133:CDS 20.0%
! ATAATTATGTGATCTATGAC+TGG - chr2.1:61265166-61265185 MS.gene03133:CDS 25.0%
! TAGTTCTTGTCAAATTTATC+AGG + chr2.1:61265946-61265965 None:intergenic 25.0%
! TCTAATCTTCAAGTGAAAAA+AGG - chr2.1:61265970-61265989 MS.gene03133:intron 25.0%
! TGAAGATACTGTAACTATAT+AGG + chr2.1:61265404-61265423 None:intergenic 25.0%
!! CAAGTTTTACTATAAAAGGA+TGG + chr2.1:61264979-61264998 None:intergenic 25.0%
!! TGGACAAGTTTTACTATAAA+AGG + chr2.1:61264983-61265002 None:intergenic 25.0%
AACTCAAAATCAGTAGAACT+AGG - chr2.1:61266177-61266196 MS.gene03133:CDS 30.0%
AAGGCTGCTATGATTAAAAT+GGG - chr2.1:61266096-61266115 MS.gene03133:CDS 30.0%
ATACTTGAACAAAACAGTCA+TGG + chr2.1:61265092-61265111 None:intergenic 30.0%
TAAGGCTGCTATGATTAAAA+TGG - chr2.1:61266095-61266114 MS.gene03133:CDS 30.0%
TACTGTAACTATATAGGATG+AGG + chr2.1:61265398-61265417 None:intergenic 30.0%
TCAAATTTATCAGGAGTAGT+TGG + chr2.1:61265937-61265956 None:intergenic 30.0%
TCTATATATGTTTCAATCGC+AGG - chr2.1:61265748-61265767 MS.gene03133:intron 30.0%
! ATTGTTTTCTAATCTCTCCT+TGG + chr2.1:61266146-61266165 None:intergenic 30.0%
!! AATAGCTTTGTGTTCTATTG+TGG - chr2.1:61264909-61264928 MS.gene03133:CDS 30.0%
!!! AGCTTTTTTTGAGAGCTTTA+AGG - chr2.1:61266077-61266096 MS.gene03133:CDS 30.0%
!!! GATTTTGATTAGCAAGTGAT+TGG + chr2.1:61265555-61265574 None:intergenic 30.0%
AAACCATCTCTTCTTCCTAA+TGG + chr2.1:61265523-61265542 None:intergenic 35.0%
AAGTAAGTCGTGTTAAGAGT+TGG + chr2.1:61265853-61265872 None:intergenic 35.0%
AATCAAAACAGCTGTGGAAA+AGG - chr2.1:61265298-61265317 MS.gene03133:CDS 35.0%
CAGAAACTCATTAAGAGGTT+TGG - chr2.1:61265262-61265281 MS.gene03133:CDS 35.0%
CCAAACAGAAACTCATTAAG+AGG - chr2.1:61265257-61265276 MS.gene03133:CDS 35.0%
CCTCTTAATGAGTTTCTGTT+TGG + chr2.1:61265260-61265279 None:intergenic 35.0%
GAAATATTGGTGTGTTAACC+GGG - chr2.1:61266118-61266137 MS.gene03133:CDS 35.0%
GAATCAAATCAAAACAGCTG+TGG - chr2.1:61265292-61265311 MS.gene03133:CDS 35.0%
GATGAAATCAAACAGTCTCA+AGG - chr2.1:61265481-61265500 MS.gene03133:CDS 35.0%
GGAAATATTGGTGTGTTAAC+CGG - chr2.1:61266117-61266136 MS.gene03133:CDS 35.0%
TGCTGAATTATCATCTACAC+TGG - chr2.1:61265364-61265383 MS.gene03133:intron 35.0%
TTGTACAACTTCAGCAATAC+AGG - chr2.1:61265817-61265836 MS.gene03133:CDS 35.0%
! AGTTGATCCAATGAGTTGAA+AGG + chr2.1:61265586-61265605 None:intergenic 35.0%
!! CAAGAGTTGTTTTCAACATC+TGG - chr2.1:61266009-61266028 MS.gene03133:intron 35.0%
AAACGGTTCTTATGACTTCC+CGG + chr2.1:61265023-61265042 None:intergenic 40.0%
AAATGTTAGCTCCATTGTCC+GGG - chr2.1:61265002-61265021 MS.gene03133:CDS 40.0%
ACGAGTGTCTGTCTTAGAAA+CGG + chr2.1:61265040-61265059 None:intergenic 40.0%
AGCTGTGCATTTGAAGAGAA+AGG + chr2.1:61264952-61264971 None:intergenic 40.0%
AGTCGTGTTAAGAGTTGGAT+CGG + chr2.1:61265848-61265867 None:intergenic 40.0%
AGTTGGATCAAAACTCGCAA+GGG + chr2.1:61265920-61265939 None:intergenic 40.0%
ATGTGATCTATGACTGGAAC+AGG - chr2.1:61265172-61265191 MS.gene03133:CDS 40.0%
CAAATGTTAGCTCCATTGTC+CGG - chr2.1:61265001-61265020 MS.gene03133:CDS 40.0%
CAACTAGATCAGTAGTACTG+AGG + chr2.1:61265633-61265652 None:intergenic 40.0%
GTTCCATTAGGAAGAAGAGA+TGG - chr2.1:61265517-61265536 MS.gene03133:CDS 40.0%
TACTGATCTAGTTGCACTCT+CGG - chr2.1:61265639-61265658 MS.gene03133:intron 40.0%
TAGTTGGATCAAAACTCGCA+AGG + chr2.1:61265921-61265940 None:intergenic 40.0%
TCAGCACAAGAAACAGTGTT+AGG + chr2.1:61265329-61265348 None:intergenic 40.0%
TGTGATCTATGACTGGAACA+GGG - chr2.1:61265173-61265192 MS.gene03133:CDS 40.0%
TGTTCTATTGTGGCTGTGTT+TGG - chr2.1:61264919-61264938 MS.gene03133:CDS 40.0%
TTGCGCAATATATGTCCCAA+TGG - chr2.1:61265880-61265899 MS.gene03133:CDS 40.0%
!! GTATGCTTGCTAGTCTTGTT+AGG - chr2.1:61265058-61265077 MS.gene03133:CDS 40.0%
AACAGTCTCAAGGTCCAGAT+TGG - chr2.1:61265491-61265510 MS.gene03133:CDS 45.0%
AATGTTGCCTCAACAGAGGA+GGG - chr2.1:61266207-61266226 MS.gene03133:CDS 45.0%
ACTGATCTAGTTGCACTCTC+GGG - chr2.1:61265640-61265659 MS.gene03133:intron 45.0%
ATCGCAGGTGCTCATACATT+TGG - chr2.1:61265763-61265782 MS.gene03133:CDS 45.0%
CCAGATTGGAAGGTTCCATT+AGG - chr2.1:61265505-61265524 MS.gene03133:CDS 45.0%
CCTAATGGAACCTTCCAATC+TGG + chr2.1:61265508-61265527 None:intergenic 45.0%
CGCAATATATGTCCCAATGG+TGG - chr2.1:61265883-61265902 MS.gene03133:CDS 45.0%
CGGACAATGGAGCTAACATT+TGG + chr2.1:61265003-61265022 None:intergenic 45.0%
GTCGTGTTAAGAGTTGGATC+GGG + chr2.1:61265847-61265866 None:intergenic 45.0%
GTTGGATCAAAACTCGCAAG+GGG + chr2.1:61265919-61265938 None:intergenic 45.0%
TCCAGCTCCTTTCAACTCAT+TGG - chr2.1:61265576-61265595 MS.gene03133:CDS 45.0%
TCTAATCTCTCCTTGGTTCC+CGG + chr2.1:61266139-61266158 None:intergenic 45.0%
TCTTATGACTTCCCGGACAA+TGG + chr2.1:61265016-61265035 None:intergenic 45.0%
TGTCAATGTTGCCTCAACAG+AGG - chr2.1:61266203-61266222 MS.gene03133:CDS 45.0%
! AAAGCTGCATTTGCTGCTCA+AGG - chr2.1:61265607-61265626 MS.gene03133:CDS 45.0%
! TCCAATGAGTTGAAAGGAGC+TGG + chr2.1:61265580-61265599 None:intergenic 45.0%
AACCATACCCTCCTCTGTTG+AGG + chr2.1:61266217-61266236 None:intergenic 50.0%
CAATGTTGCCTCAACAGAGG+AGG - chr2.1:61266206-61266225 MS.gene03133:CDS 50.0%
GTCTCAAGGTCCAGATTGGA+AGG - chr2.1:61265495-61265514 MS.gene03133:CDS 50.0%
!! ATATGTCCCAATGGTGGACC+TGG - chr2.1:61265889-61265908 MS.gene03133:CDS 50.0%
AAACTCGCAAGGGGAGTTCC+AGG + chr2.1:61265910-61265929 None:intergenic 55.0%
GGAGTTCCAGGTCCACCATT+GGG + chr2.1:61265898-61265917 None:intergenic 55.0%
GGTGTGTTAACCGGGAACCA+AGG - chr2.1:61266126-61266145 MS.gene03133:CDS 55.0%
TGCCTCAACAGAGGAGGGTA+TGG - chr2.1:61266212-61266231 MS.gene03133:CDS 55.0%
GGGAGTTCCAGGTCCACCAT+TGG + chr2.1:61265899-61265918 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 61264886 61266248 61264886 ID=MS.gene03133
chr2.1 mRNA 61264886 61266248 61264886 ID=MS.gene03133.t1;Parent=MS.gene03133
chr2.1 exon 61266027 61266248 61266027 ID=MS.gene03133.t1.exon1;Parent=MS.gene03133.t1
chr2.1 CDS 61266027 61266248 61266027 ID=cds.MS.gene03133.t1;Parent=MS.gene03133.t1
chr2.1 exon 61265749 61265940 61265749 ID=MS.gene03133.t1.exon2;Parent=MS.gene03133.t1
chr2.1 CDS 61265749 61265940 61265749 ID=cds.MS.gene03133.t1;Parent=MS.gene03133.t1
chr2.1 exon 61265473 61265638 61265473 ID=MS.gene03133.t1.exon3;Parent=MS.gene03133.t1
chr2.1 CDS 61265473 61265638 61265473 ID=cds.MS.gene03133.t1;Parent=MS.gene03133.t1
chr2.1 exon 61264886 61265364 61264886 ID=MS.gene03133.t1.exon4;Parent=MS.gene03133.t1
chr2.1 CDS 61264886 61265364 61264886 ID=cds.MS.gene03133.t1;Parent=MS.gene03133.t1
Gene Sequence

>MS.gene03133

ATGAACTCTCTTCGTGCTGTAGCAATAGCTTTGTGTTCTATTGTGGCTGTGTTTGGAGTGTTACCTTTCTCTTCAAATGCACAGCTTAATCCATCCTTTTATAGTAAAACTTGTCCAAATGTTAGCTCCATTGTCCGGGAAGTCATAAGAACCGTTTCTAAGACAGACACTCGTATGCTTGCTAGTCTTGTTAGGCTTCACTTCCATGACTGTTTTGTTCAAGTATGTTTACTTTACATTCTTGTTTCTAAATGATTTGTATTATGCTATTGTTATAATCATAATTATGTGATCTATGACTGGAACAGGGTTGTGATGCATCAGTACTGTTGAATAACACTGCTACTATTGTGAGTGAACAAGATGCATTTCCAAACAGAAACTCATTAAGAGGTTTGGATGTTGTGAATCAAATCAAAACAGCTGTGGAAAAGGCTTGTCCTAACACTGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTGAATTATCATCTACACTGGTATACATTCCTCATCCTATATAGTTACAGTATCTTCATTCACCATATTGAATTTTAAATGTAGTTTCTGATTTATCATTATGTTTTTATTTTGTGATGAAATCAAACAGTCTCAAGGTCCAGATTGGAAGGTTCCATTAGGAAGAAGAGATGGTTTAACAGCAAACCAATCACTTGCTAATCAAAATCTTCCAGCTCCTTTCAACTCATTGGATCAACTCAAAGCTGCATTTGCTGCTCAAGGCCTCAGTACTACTGATCTAGTTGCACTCTCGGGTATGTAACATTTTTGTTTAAAAATTTCTAATTGGTCGTTACAATGATGACGCGAATGTTACAATAATAATATGTATGATTATTGATCTATATATGTTTCAATCGCAGGTGCTCATACATTTGGAAGAGCTCATTGCTCTTTATTTGTTAGTCGATTGTACAACTTCAGCAATACAGGAAATCCCGATCCAACTCTTAACACGACTTACTTACAACAATTGCGCAATATATGTCCCAATGGTGGACCTGGAACTCCCCTTGCGAGTTTTGATCCAACTACTCCTGATAAATTTGACAAGAACTATTACTCTAATCTTCAAGTGAAAAAAGGTTTGCTTCAAAGTGATCAAGAGTTGTTTTCAACATCTGGTGCAGATACCATTAGTATTGTCAACAATTTTGCAACTGATCAAAAAGCTTTTTTTGAGAGCTTTAAGGCTGCTATGATTAAAATGGGAAATATTGGTGTGTTAACCGGGAACCAAGGAGAGATTAGAAAACAATGCAACTTTGTTAACTCAAAATCAGTAGAACTAGGTCTTGTCAATGTTGCCTCAACAGAGGAGGGTATGGTTAGCTCAATGTAA
Protein sequence

>MS.gene03133.t1

MNSLRAVAIALCSIVAVFGVLPFSSNAQLNPSFYSKTCPNVSSIVREVIRTVSKTDTRMLASLVRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPNRNSLRGLDVVNQIKTAVEKACPNTVSCADILALAAELSSTLSQGPDWKVPLGRRDGLTANQSLANQNLPAPFNSLDQLKAAFAAQGLSTTDLVALSGAHTFGRAHCSLFVSRLYNFSNTGNPDPTLNTTYLQQLRNICPNGGPGTPLASFDPTTPDKFDKNYYSNLQVKKGLLQSDQELFSTSGADTISIVNNFATDQKAFFESFKAAMIKMGNIGVLTGNQGEIRKQCNFVNSKSVELGLVNVASTEEGMVSSM