AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene02082

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02082.t1 MTR_2g029815 95.739 352 15 0 1 352 1 352 0.0 692
MS.gene02082.t1 MTR_2g029820 89.296 355 35 1 1 352 1 355 0.0 650
MS.gene02082.t1 MTR_2g029800 82.153 353 62 1 1 352 1 353 0.0 595
MS.gene02082.t1 MTR_2g029830 83.180 327 55 0 22 348 21 347 0.0 566
MS.gene02082.t1 MTR_2g028980 73.521 355 91 1 1 352 1 355 0.0 534
MS.gene02082.t1 MTR_2g029740 72.676 355 94 2 1 352 1 355 0.0 519
MS.gene02082.t1 MTR_2g029750 71.469 354 99 1 1 352 1 354 0.0 516
MS.gene02082.t1 MTR_2g029850 72.365 351 97 0 1 351 1 351 0.0 514
MS.gene02082.t1 MTR_2g029860 71.469 354 98 3 1 352 1 353 1.59e-180 504
MS.gene02082.t1 MTR_2g029830 84.000 275 44 0 74 348 5 279 5.20e-173 482
MS.gene02082.t1 MTR_2g029910 66.570 344 113 2 10 352 11 353 3.78e-167 470
MS.gene02082.t1 MTR_2g029560 66.181 343 114 1 8 350 3 343 4.33e-162 457
MS.gene02082.t1 MTR_2g029730 64.589 353 116 3 1 352 1 345 2.83e-160 452
MS.gene02082.t1 MTR_7g093370 60.000 320 123 2 16 330 52 371 2.61e-132 382
MS.gene02082.t1 MTR_1g054205 58.654 312 128 1 20 330 15 326 2.08e-131 379
MS.gene02082.t1 MTR_4g125940 52.866 314 144 2 20 331 19 330 4.06e-109 322
MS.gene02082.t1 MTR_5g017860 51.475 305 144 3 27 330 25 326 5.90e-106 314
MS.gene02082.t1 MTR_5g021060 51.155 303 147 1 29 331 30 331 2.00e-105 313
MS.gene02082.t1 MTR_2g040000 47.576 330 161 3 12 331 5 332 6.48e-105 311
MS.gene02082.t1 MTR_5g017850 49.508 305 150 3 27 330 25 326 6.67e-103 306
MS.gene02082.t1 MTR_8g076820 48.515 303 155 1 29 331 30 331 8.79e-102 303
MS.gene02082.t1 MTR_4g125940 55.797 276 118 2 58 331 2 275 1.06e-100 298
MS.gene02082.t1 MTR_2g084000 49.541 327 154 6 6 330 2 319 3.91e-100 298
MS.gene02082.t1 MTR_2g084080 47.077 325 163 2 6 330 2 317 1.16e-99 297
MS.gene02082.t1 MTR_4g029200 50.159 315 146 4 17 330 34 338 2.06e-98 295
MS.gene02082.t1 MTR_3g094650 48.137 322 151 4 12 326 6 318 2.14e-97 292
MS.gene02082.t1 MTR_2g084110 47.152 316 158 2 15 330 11 317 2.34e-97 291
MS.gene02082.t1 MTR_7g072510 47.368 304 151 2 27 330 18 312 1.85e-96 289
MS.gene02082.t1 MTR_1g022970 47.682 302 158 0 29 330 46 347 1.56e-95 288
MS.gene02082.t1 MTR_2g084020 46.519 316 161 2 15 330 11 318 1.59e-95 287
MS.gene02082.t1 MTR_2g084090 47.003 317 158 3 15 330 11 318 1.66e-95 287
MS.gene02082.t1 MTR_4g083710 48.607 323 156 4 11 330 9 324 1.79e-95 287
MS.gene02082.t1 MTR_3g072190 46.688 317 160 2 14 330 11 318 2.43e-95 286
MS.gene02082.t1 MTR_3g094670 48.171 328 158 4 1 326 1 318 9.03e-95 285
MS.gene02082.t1 MTR_4g029170 47.447 333 160 6 1 330 1 321 4.76e-94 283
MS.gene02082.t1 MTR_2g084010 46.061 330 166 4 1 330 1 318 8.95e-94 282
MS.gene02082.t1 MTR_3g466200 47.664 321 155 5 13 330 10 320 1.12e-93 282
MS.gene02082.t1 MTR_4g029190 48.961 337 150 7 7 330 13 340 1.50e-93 283
MS.gene02082.t1 MTR_3g094630 48.494 332 156 4 1 330 4 322 1.50e-92 279
MS.gene02082.t1 MTR_5g083860 46.926 309 153 3 24 330 26 325 1.59e-92 280
MS.gene02082.t1 MTR_4g029180 48.837 301 143 4 32 330 30 321 8.55e-92 277
MS.gene02082.t1 MTR_4g046713 44.582 323 171 4 9 330 11 326 2.01e-90 274
MS.gene02082.t1 MTR_5g074970 45.679 324 162 5 11 330 13 326 5.05e-90 273
MS.gene02082.t1 MTR_4g122640 46.535 303 157 3 29 330 38 336 7.88e-90 273
MS.gene02082.t1 MTR_7g072480 47.368 304 151 2 27 330 22 316 1.29e-89 271
MS.gene02082.t1 MTR_2g088770 44.201 319 172 5 15 331 12 326 1.71e-88 269
MS.gene02082.t1 MTR_1g115900 44.411 331 167 6 9 331 1 322 1.94e-88 269
MS.gene02082.t1 MTR_2g029880 62.441 213 69 3 139 351 7 208 2.44e-88 265
MS.gene02082.t1 MTR_4g074995 46.417 321 149 5 13 330 8 308 1.34e-87 266
MS.gene02082.t1 MTR_5g014100 46.865 303 157 2 32 330 29 331 5.18e-87 266
MS.gene02082.t1 MTR_7g107520 43.750 320 174 4 11 330 7 320 3.78e-86 263
MS.gene02082.t1 MTR_5g074740 44.000 325 171 4 9 330 5 321 3.85e-86 263
MS.gene02082.t1 MTR_5g074760 44.375 320 167 4 14 330 10 321 4.94e-86 263
MS.gene02082.t1 MTR_5g049280 42.857 329 173 7 14 331 14 338 1.17e-85 262
MS.gene02082.t1 MTR_3g092990 43.260 319 178 2 14 331 11 327 1.25e-85 262
MS.gene02082.t1 MTR_2g008710 45.695 302 153 5 33 330 31 325 3.22e-85 261
MS.gene02082.t1 MTR_5g074710 44.615 325 169 4 9 330 5 321 4.61e-85 260
MS.gene02082.t1 MTR_4g114210 44.373 311 159 6 26 330 18 320 1.28e-84 259
MS.gene02082.t1 MTR_3g466180 45.455 308 159 2 23 330 25 323 4.79e-84 258
MS.gene02082.t1 MTR_7g086820 42.997 307 166 5 27 333 18 315 1.14e-83 256
MS.gene02082.t1 MTR_4g030890 43.042 309 171 3 24 332 95 398 2.34e-83 259
MS.gene02082.t1 MTR_5g074860 44.172 326 166 6 12 329 7 324 3.18e-83 256
MS.gene02082.t1 MTR_4g031140 41.026 312 179 3 25 336 24 330 7.25e-83 255
MS.gene02082.t1 MTR_4g074990 44.272 323 154 4 11 330 6 305 1.52e-82 253
MS.gene02082.t1 MTR_3g467600 46.278 309 156 4 25 330 23 324 7.20e-82 252
MS.gene02082.t1 MTR_6g043240 46.296 324 151 9 29 348 42 346 2.70e-81 251
MS.gene02082.t1 MTR_5g022870 41.692 331 171 9 6 330 2 316 1.19e-80 249
MS.gene02082.t1 MTR_7g026990 42.053 302 165 4 30 331 32 323 2.21e-79 246
MS.gene02082.t1 MTR_1g009750 45.277 307 160 5 28 330 26 328 5.93e-79 245
MS.gene02082.t1 MTR_1g086320 41.018 334 189 4 1 330 4 333 7.86e-79 244
MS.gene02082.t1 MTR_5g016010 41.441 333 186 5 1 329 1 328 1.11e-78 244
MS.gene02082.t1 MTR_1g101830 43.137 306 168 4 25 330 23 322 1.54e-78 243
MS.gene02082.t1 MTR_3g072190 48.263 259 125 2 72 330 2 251 2.16e-78 241
MS.gene02082.t1 MTR_4g133800 43.289 298 158 6 34 330 46 333 4.56e-78 243
MS.gene02082.t1 MTR_8g075100 42.444 311 163 7 24 330 21 319 9.92e-78 241
MS.gene02082.t1 MTR_4g087965 43.279 305 166 5 28 327 41 343 5.21e-77 240
MS.gene02082.t1 MTR_6g043280 43.119 327 159 8 20 332 21 334 1.88e-76 239
MS.gene02082.t1 MTR_1g038680 43.046 302 166 5 33 330 33 332 2.42e-76 238
MS.gene02082.t1 MTR_1g086490 39.883 341 190 4 1 330 4 340 1.12e-75 237
MS.gene02082.t1 MTR_6g027440 42.320 319 171 7 14 330 7 314 1.63e-75 236
MS.gene02082.t1 MTR_2g437770 42.763 304 162 6 29 331 50 342 2.25e-75 236
MS.gene02082.t1 MTR_4g127670 44.554 303 158 5 28 326 23 319 6.73e-75 234
MS.gene02082.t1 MTR_7g029030 43.544 333 172 9 1 330 1 320 7.47e-75 234
MS.gene02082.t1 MTR_4g095450 42.508 327 174 6 5 326 3 320 9.11e-75 234
MS.gene02082.t1 MTR_4g074980 43.182 308 143 6 23 330 19 294 1.57e-73 230
MS.gene02082.t1 MTR_3g092990 40.752 319 175 3 14 331 11 316 9.31e-73 228
MS.gene02082.t1 MTR_7g086870 41.694 307 163 7 27 331 20 312 6.15e-72 226
MS.gene02082.t1 MTR_1g025980 41.967 305 162 6 29 329 24 317 3.48e-71 224
MS.gene02082.t1 MTR_6g043460 42.333 300 160 6 29 326 36 324 1.11e-70 224
MS.gene02082.t1 MTR_4g132490 38.957 326 189 6 9 330 8 327 1.17e-70 223
MS.gene02082.t1 MTR_2g008160 40.836 311 172 6 25 330 20 323 1.59e-70 223
MS.gene02082.t1 MTR_2g099175 37.805 328 188 8 9 330 18 335 3.11e-70 223
MS.gene02082.t1 MTR_1g090760 41.083 314 179 5 21 330 19 330 6.30e-70 222
MS.gene02082.t1 MTR_4g074980 46.888 241 119 3 23 260 19 253 8.50e-70 219
MS.gene02082.t1 MTR_1g077000 38.024 334 190 7 1 330 7 327 1.45e-69 221
MS.gene02082.t1 MTR_1g009750 41.694 307 154 6 28 330 26 311 6.94e-68 216
MS.gene02082.t1 MTR_5g033470 39.103 312 177 7 27 330 71 377 4.29e-67 216
MS.gene02082.t1 MTR_0155s0040 38.562 306 173 6 26 330 24 315 9.71e-67 213
MS.gene02082.t1 MTR_2g008730 38.820 322 161 6 14 330 11 301 1.65e-64 207
MS.gene02082.t1 MTR_8g062780 38.264 311 184 4 25 331 19 325 9.11e-64 206
MS.gene02082.t1 MTR_2g067440 35.068 365 189 8 3 331 36 388 3.04e-63 206
MS.gene02082.t1 MTR_5g074860 37.730 326 148 5 12 329 7 285 1.31e-62 201
MS.gene02082.t1 MTR_3g105790 37.898 314 187 3 15 326 11 318 3.79e-61 199
MS.gene02082.t1 MTR_0286s0010 38.387 310 182 6 25 330 30 334 4.64e-61 199
MS.gene02082.t1 MTR_6g008075 38.387 310 182 6 25 330 30 334 4.64e-61 199
MS.gene02082.t1 MTR_2g077990 37.612 335 170 9 25 326 74 402 1.80e-60 199
MS.gene02082.t1 MTR_2g078610 37.313 335 171 9 25 326 74 402 1.98e-60 199
MS.gene02082.t1 MTR_1g066710 37.864 309 179 5 27 331 25 324 4.26e-59 194
MS.gene02082.t1 MTR_1g066380 36.688 308 184 4 27 331 25 324 2.48e-57 189
MS.gene02082.t1 MTR_1g066640 36.688 308 184 4 27 331 25 324 7.36e-56 185
MS.gene02082.t1 MTR_2g078280 37.231 325 165 9 25 316 74 392 9.55e-56 187
MS.gene02082.t1 MTR_4g132110 35.714 308 185 5 32 335 35 333 5.08e-55 183
MS.gene02082.t1 MTR_4g132110 36.102 313 182 7 32 335 35 338 6.45e-55 183
MS.gene02082.t1 MTR_0147s0010 34.568 324 176 5 26 329 74 381 6.51e-55 184
MS.gene02082.t1 MTR_1g066680 36.364 308 184 5 27 331 25 323 1.16e-54 182
MS.gene02082.t1 MTR_2g067450 37.540 309 181 7 25 329 9 309 2.72e-54 181
MS.gene02082.t1 MTR_2g008160 36.013 311 152 6 25 330 20 288 5.29e-54 179
MS.gene02082.t1 MTR_3g072210 47.120 191 92 4 141 330 56 238 1.49e-47 161
MS.gene02082.t1 MTR_1g066380 38.023 263 150 5 73 331 3 256 4.62e-47 160
MS.gene02082.t1 MTR_2g008160 45.506 178 93 3 25 202 20 193 9.06e-47 158
MS.gene02082.t1 MTR_3g105790 38.819 237 141 2 96 330 12 246 2.79e-44 153
MS.gene02082.t1 MTR_5g074700 39.655 232 115 5 102 330 5 214 9.24e-44 150
MS.gene02082.t1 MTR_7g072490 38.153 249 91 4 75 323 2 187 1.33e-40 142
MS.gene02082.t1 MTR_3g072260 54.286 105 48 0 28 132 25 129 2.92e-33 120
MS.gene02082.t1 MTR_5g058120 41.104 163 83 3 164 326 6 155 1.51e-29 114
MS.gene02082.t1 MTR_2g029930 53.448 116 26 3 11 112 1 102 7.48e-29 108
MS.gene02082.t1 MTR_2g077980 30.961 281 149 11 91 331 11 286 3.12e-27 108
MS.gene02082.t1 MTR_2g078560 31.579 228 123 5 135 331 96 321 8.28e-27 108
MS.gene02082.t1 MTR_7g086790 33.679 193 104 5 76 267 17 186 9.81e-24 97.1
MS.gene02082.t1 MTR_3g462850 38.356 146 79 6 193 331 9 150 3.80e-22 91.7
MS.gene02082.t1 MTR_1g089005 42.342 111 57 2 29 133 15 124 2.71e-18 81.3
MS.gene02082.t1 MTR_6g048160 56.338 71 27 2 68 138 22 88 6.43e-18 78.2
MS.gene02082.t1 MTR_1g098320 48.193 83 41 1 251 333 47 127 7.68e-18 79.7
MS.gene02082.t1 MTR_4g114220 50.704 71 25 2 63 133 37 97 5.40e-16 74.3
MS.gene02082.t1 MTR_7g107500 41.414 99 54 3 232 330 3 97 2.95e-15 71.2
MS.gene02082.t1 MTR_5g074770 39.796 98 53 2 232 329 17 108 3.65e-15 71.2
MS.gene02082.t1 MTR_4g012865 43.662 71 40 0 26 96 74 144 1.11e-14 71.2
MS.gene02082.t1 MTR_7g086810 31.405 121 57 1 27 147 4 98 1.18e-13 70.1
MS.gene02082.t1 MTR_4g031040 28.571 175 81 3 88 262 1 131 1.36e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene02082.t1 AT5G06730 56.037 323 142 0 11 333 15 337 5.77e-131 379
MS.gene02082.t1 AT5G06720 57.276 323 133 2 9 330 15 333 8.83e-131 377
MS.gene02082.t1 AT2G38380 55.758 330 139 2 24 352 26 349 3.57e-129 374
MS.gene02082.t1 AT2G38390 54.242 330 144 2 24 352 26 349 1.85e-128 372
MS.gene02082.t1 AT3G49120 55.758 330 140 3 25 352 28 353 1.16e-124 362
MS.gene02082.t1 AT3G32980 55.455 330 141 3 25 352 27 352 4.52e-123 358
MS.gene02082.t1 AT4G08770 55.312 320 141 2 25 342 20 339 1.05e-121 355
MS.gene02082.t1 AT3G49110 55.152 330 142 3 25 352 29 354 4.61e-121 353
MS.gene02082.t1 AT4G08780 53.438 320 147 2 25 342 20 339 6.01e-117 342
MS.gene02082.t1 AT5G19880 52.665 319 145 3 15 330 14 329 4.95e-115 337
MS.gene02082.t1 AT5G19890 53.094 307 136 4 27 331 28 328 1.34e-107 318
MS.gene02082.t1 AT2G18140 48.000 325 164 2 6 330 16 335 4.30e-105 312
MS.gene02082.t1 AT4G36430 50.325 308 152 1 24 331 25 331 9.20e-105 311
MS.gene02082.t1 AT5G66390 49.026 308 156 1 23 330 27 333 5.67e-104 309
MS.gene02082.t1 AT2G18150 50.000 304 151 1 27 330 34 336 9.24e-104 308
MS.gene02082.t1 AT1G14550 50.492 305 143 4 27 330 24 321 5.19e-101 301
MS.gene02082.t1 AT5G05340 48.693 306 146 3 27 330 28 324 7.74e-98 293
MS.gene02082.t1 AT1G14540 48.137 322 160 3 9 330 1 315 3.05e-97 291
MS.gene02082.t1 AT1G44970 48.377 308 157 1 23 330 41 346 1.95e-96 290
MS.gene02082.t1 AT3G50990 44.807 337 178 2 1 330 6 341 3.79e-96 289
MS.gene02082.t1 AT1G49570 46.557 305 158 3 27 328 46 348 3.65e-95 287
MS.gene02082.t1 AT4G16270 46.865 303 156 4 29 330 50 348 6.41e-90 274
MS.gene02082.t1 AT1G68850 44.805 308 164 5 29 331 30 336 1.01e-87 268
MS.gene02082.t1 AT1G71695 45.820 323 157 7 29 348 44 351 1.30e-85 263
MS.gene02082.t1 AT5G58400 44.985 329 165 5 5 330 10 325 2.99e-85 261
MS.gene02082.t1 AT2G22420 42.308 312 175 3 29 340 23 329 9.38e-85 260
MS.gene02082.t1 AT2G41480 43.161 329 168 7 12 330 9 328 2.60e-84 258
MS.gene02082.t1 AT2G35380 47.682 302 154 3 33 330 34 335 2.68e-84 259
MS.gene02082.t1 AT3G03670 43.750 304 168 2 27 330 21 321 7.59e-84 257
MS.gene02082.t1 AT2G18980 45.988 324 161 7 13 330 8 323 1.96e-83 256
MS.gene02082.t1 AT5G58390 44.620 316 163 4 14 326 6 312 3.23e-83 255
MS.gene02082.t1 AT1G05260 41.441 333 186 7 1 331 1 326 2.72e-82 253
MS.gene02082.t1 AT5G14130 43.711 318 170 5 18 330 17 330 3.62e-82 253
MS.gene02082.t1 AT4G11290 40.923 325 187 4 8 330 5 326 3.76e-82 253
MS.gene02082.t1 AT5G14130 43.168 322 174 5 14 330 54 371 6.89e-82 254
MS.gene02082.t1 AT5G15180 41.935 310 169 6 25 330 27 329 8.90e-82 252
MS.gene02082.t1 AT3G21770 42.903 310 171 5 24 331 24 329 1.34e-81 252
MS.gene02082.t1 AT4G37530 44.839 310 164 5 25 330 23 329 9.02e-81 249
MS.gene02082.t1 AT4G30170 44.805 308 159 5 27 330 25 325 1.19e-80 249
MS.gene02082.t1 AT3G01190 42.320 319 176 7 14 330 9 321 1.66e-80 249
MS.gene02082.t1 AT5G64120 42.154 325 170 7 12 330 16 328 5.05e-80 248
MS.gene02082.t1 AT5G51890 43.614 321 164 8 17 330 12 322 5.63e-79 244
MS.gene02082.t1 AT5G17820 40.252 318 177 6 13 330 9 313 6.44e-79 244
MS.gene02082.t1 AT1G05240 43.689 309 158 7 29 330 26 325 2.66e-78 243
MS.gene02082.t1 AT1G05250 43.689 309 158 7 29 330 26 325 2.66e-78 243
MS.gene02082.t1 AT5G17820 40.252 318 177 6 13 330 62 366 1.23e-77 243
MS.gene02082.t1 AT3G49960 42.025 326 179 5 9 330 10 329 1.85e-77 241
MS.gene02082.t1 AT5G67400 41.104 326 185 4 9 330 7 329 5.50e-77 240
MS.gene02082.t1 AT4G25980 40.673 327 179 6 9 330 10 326 1.67e-76 238
MS.gene02082.t1 AT5G39580 41.088 331 179 7 1 330 4 319 3.64e-75 235
MS.gene02082.t1 AT4G37520 41.558 308 173 5 27 330 25 329 2.00e-73 231
MS.gene02082.t1 AT5G64110 43.709 302 157 7 33 330 38 330 4.17e-72 227
MS.gene02082.t1 AT4G37520 41.234 308 171 6 27 330 25 326 8.23e-72 226
MS.gene02082.t1 AT5G42180 39.873 316 182 5 14 329 9 316 9.34e-71 223
MS.gene02082.t1 AT4G31760 39.228 311 179 4 23 330 23 326 1.94e-70 223
MS.gene02082.t1 AT5G64100 41.528 301 163 7 33 330 41 331 2.73e-70 223
MS.gene02082.t1 AT2G39040 41.667 312 169 8 27 330 44 350 3.69e-70 223
MS.gene02082.t1 AT4G37530 46.899 258 132 4 25 278 23 279 7.04e-70 220
MS.gene02082.t1 AT5G24070 38.209 335 192 7 4 331 10 336 8.94e-70 222
MS.gene02082.t1 AT2G34060 39.935 308 176 6 26 327 39 343 9.34e-69 219
MS.gene02082.t1 AT4G33420 38.226 327 188 7 4 330 13 325 1.49e-68 218
MS.gene02082.t1 AT2G24800 40.584 308 172 5 27 330 29 329 2.00e-68 218
MS.gene02082.t1 AT4G33420 38.226 327 188 7 4 330 60 372 7.12e-68 218
MS.gene02082.t1 AT4G17690 40.129 309 174 5 29 334 26 326 9.81e-68 216
MS.gene02082.t1 AT5G40150 40.000 315 180 4 18 330 21 328 1.48e-67 216
MS.gene02082.t1 AT2G43480 37.910 335 183 9 13 330 9 335 6.88e-67 214
MS.gene02082.t1 AT4G26010 39.692 325 171 9 13 330 3 309 7.47e-67 213
MS.gene02082.t1 AT4G26010 39.692 325 171 9 13 330 31 337 1.08e-66 214
MS.gene02082.t1 AT3G28200 39.482 309 177 5 24 330 16 316 4.33e-66 211
MS.gene02082.t1 AT1G77100 39.210 329 184 7 7 330 2 319 4.43e-66 211
MS.gene02082.t1 AT1G24110 38.554 332 183 9 8 330 3 322 1.16e-65 211
MS.gene02082.t1 AT5G47000 38.907 311 180 5 27 334 31 334 1.30e-65 211
MS.gene02082.t1 AT4G33870 33.929 336 184 5 27 327 66 398 2.37e-65 212
MS.gene02082.t1 AT2G35380 46.964 247 127 3 88 330 1 247 2.17e-63 202
MS.gene02082.t1 AT1G30870 38.710 310 173 7 29 333 51 348 3.77e-63 205
MS.gene02082.t1 AT1G34510 38.580 324 181 7 10 331 3 310 3.54e-62 201
MS.gene02082.t1 AT5G22410 37.049 305 178 7 27 326 26 321 3.60e-62 202
MS.gene02082.t1 AT3G17070 39.514 329 179 10 11 330 22 339 4.79e-59 194
MS.gene02082.t1 AT4G21960 36.513 304 180 5 32 331 34 328 4.82e-57 189
MS.gene02082.t1 AT2G37130 35.275 309 188 5 26 330 27 327 6.82e-53 177
MS.gene02082.t1 AT2G37130 35.314 303 184 5 32 330 2 296 8.02e-52 174
MS.gene02082.t1 AT4G25980 43.333 210 106 5 9 213 55 256 2.44e-48 164
MS.gene02082.t1 AT3G17070 39.405 269 144 10 71 330 18 276 1.89e-44 154
MS.gene02082.t1 AT5G39580 39.496 238 122 6 1 231 4 226 2.17e-40 142
MS.gene02082.t1 AT2G24800 40.698 172 98 1 27 198 29 196 2.64e-35 129
MS.gene02082.t1 AT4G08390 26.959 319 162 14 27 314 83 361 1.87e-14 74.3
MS.gene02082.t1 AT4G08390 26.959 319 162 14 27 314 84 362 2.17e-14 73.9
MS.gene02082.t1 AT4G08390 26.959 319 162 14 27 314 84 362 2.17e-14 73.9
MS.gene02082.t1 AT4G08390 26.959 319 162 14 27 314 84 362 2.17e-14 73.9
MS.gene02082.t1 AT1G77490 27.099 262 153 9 63 313 106 340 1.45e-13 71.6
MS.gene02082.t1 AT1G77490 26.996 263 154 9 63 314 106 341 1.64e-13 71.6
MS.gene02082.t1 AT3G09640 24.883 213 118 5 103 313 74 246 3.75e-13 68.9
MS.gene02082.t1 AT3G09640 24.883 213 118 5 103 313 74 246 3.75e-13 68.9
MS.gene02082.t1 AT3G42570 31.915 141 83 4 58 196 20 149 2.32e-12 64.7

Find 64 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAGGCTGCTATGATTAAAA+TGG 0.162076 2.2:-58072243 MS.gene02082:CDS
TCCAGCTCCTTTCAACTCAT+TGG 0.300263 2.2:-58072773 MS.gene02082:CDS
CCTCTTAATGAGTTTCTGTT+TGG 0.310696 2.2:+58073095 None:intergenic
AAACCATCTCTTCTTCCTAA+TGG 0.312841 2.2:+58072829 None:intergenic
TGTTCTATTGTGGCTGTGTT+TGG 0.317055 2.2:-58073439 MS.gene02082:CDS
ATTTCAGGTGCTCATACATT+TGG 0.340486 2.2:-58072575 MS.gene02082:intron
TAGTTCTTGTCAAATTTATC+AGG 0.341189 2.2:+58072395 None:intergenic
GTATGCTTGCTAGTCTTGTT+AGG 0.342382 2.2:-58073300 MS.gene02082:CDS
CAGAAACTCATTAAGAGGTT+TGG 0.342785 2.2:-58073090 MS.gene02082:CDS
GGAAATATTGGTGTGTTAAC+GGG 0.352987 2.2:-58072221 MS.gene02082:CDS
AAACTTGCAAGGGGAGTTCC+AGG 0.371860 2.2:+58072431 None:intergenic
CCAAACAGAAACTCATTAAG+AGG 0.372095 2.2:-58073095 MS.gene02082:CDS
GGGAAATATTGGTGTGTTAA+CGG 0.383198 2.2:-58072222 MS.gene02082:CDS
TCAAATTTATCAGGAGTAGT+TGG 0.385860 2.2:+58072404 None:intergenic
ATGATTAAAATGGGAAATAT+TGG 0.387468 2.2:-58072233 MS.gene02082:CDS
TTGTACAACTTTAGCAATAC+AGG 0.423410 2.2:-58072521 MS.gene02082:CDS
CAAGAGTTGTTCTCAACATC+TGG 0.429128 2.2:-58072329 MS.gene02082:CDS
CCAGATTGGAAGGTTCCATT+AGG 0.435644 2.2:-58072844 MS.gene02082:CDS
CCTAATGGAACCTTCCAATC+TGG 0.441332 2.2:+58072844 None:intergenic
AGTTGTGCATTTGAAGAGAA+AGG 0.444177 2.2:+58073409 None:intergenic
TACTGATCTAGTTGCACTCT+CGG 0.452022 2.2:-58072710 MS.gene02082:CDS
AATAGCTTTGTGTTCTATTG+TGG 0.454114 2.2:-58073449 MS.gene02082:CDS
AATCAAAACAGCTGTGGAAA+AGG 0.458727 2.2:-58073054 MS.gene02082:CDS
AACAGTCTCAAGGTCCAGAT+TGG 0.461046 2.2:-58072858 MS.gene02082:intron
AAGGCTGCTATGATTAAAAT+GGG 0.470087 2.2:-58072242 MS.gene02082:CDS
TATTGCTAAAGTTGTACAAT+CGG 0.471105 2.2:+58072525 None:intergenic
TCAGCACAAGAAACTGTGTT+AGG 0.474603 2.2:+58073026 None:intergenic
AAACGGTTCTTATGACTTCA+CGG 0.480660 2.2:+58073338 None:intergenic
AAGTAAGTTGTGTTAAGAGT+TGG 0.480928 2.2:+58072488 None:intergenic
TCCAATGAGTTGAAAGGAGC+TGG 0.482187 2.2:+58072772 None:intergenic
GCTAACAAATAAAGAGCAAT+GGG 0.496156 2.2:+58072547 None:intergenic
AGTTGTGTTAAGAGTTGGAT+CGG 0.507183 2.2:+58072493 None:intergenic
ATATGTCCCAATGGTGGACC+TGG 0.507847 2.2:-58072449 MS.gene02082:CDS
GGAGTTCCAGGTCCACCATT+GGG 0.508361 2.2:+58072443 None:intergenic
TCTTATGACTTCACGGACAA+TGG 0.512577 2.2:+58073345 None:intergenic
GTTGTGTTAAGAGTTGGATC+GGG 0.518642 2.2:+58072494 None:intergenic
TGCCTCAACAGAGGAGGGTA+TGG 0.518844 2.2:-58072126 MS.gene02082:CDS
GGGAGTTCCAGGTCCACCAT+TGG 0.527464 2.2:+58072442 None:intergenic
AAAGCTGCATTTGCTGCTCA+AGG 0.531000 2.2:-58072742 MS.gene02082:CDS
AGTTGATCCAATGAGTTGAA+AGG 0.533420 2.2:+58072766 None:intergenic
AAATTGGTTGACAATGCTAA+TGG 0.542333 2.2:+58072298 None:intergenic
GGCTAACAAATAAAGAGCAA+TGG 0.545837 2.2:+58072546 None:intergenic
ACTGATCTAGTTGCACTCTC+GGG 0.548997 2.2:-58072709 MS.gene02082:intron
CGCAATATATGTCCCAATGG+TGG 0.550346 2.2:-58072455 MS.gene02082:CDS
ACGAGTATCTGTCTTAGAAA+CGG 0.557887 2.2:+58073321 None:intergenic
GTCTCAAGGTCCAGATTGGA+AGG 0.564908 2.2:-58072854 MS.gene02082:CDS
AATTCAAAATCAGTAGAACT+AGG 0.565587 2.2:-58072161 MS.gene02082:CDS
AGTTGGATCAAAACTTGCAA+GGG 0.570962 2.2:+58072421 None:intergenic
TAGTTGGATCAAAACTTGCA+AGG 0.578934 2.2:+58072420 None:intergenic
ATACTTGAACAAAACAGTCA+TGG 0.583464 2.2:+58073269 None:intergenic
GTTCCATTAGGAAGAAGAGA+TGG 0.584332 2.2:-58072832 MS.gene02082:CDS
CAGTGTTGCCTCAACAGAGG+AGG 0.587955 2.2:-58072132 MS.gene02082:CDS
AACCATACCCTCCTCTGTTG+AGG 0.590356 2.2:+58072124 None:intergenic
AGCATCTTGTTCACTCACAA+TGG 0.600625 2.2:+58073121 None:intergenic
GATGAAATCAAACAGTCTCA+AGG 0.602198 2.2:-58072868 MS.gene02082:intron
GAATCAAATCAAAACAGCTG+TGG 0.608984 2.2:-58073060 MS.gene02082:CDS
GAAATATTGGTGTGTTAACG+GGG 0.611222 2.2:-58072220 MS.gene02082:CDS
TTGCGCAATATATGTCCCAA+TGG 0.625828 2.2:-58072458 MS.gene02082:CDS
TGCTGAAATATCATCTACGC+TGG 0.640530 2.2:-58072988 MS.gene02082:intron
GGTGTGTTAACGGGGAACCA+AGG 0.643371 2.2:-58072212 MS.gene02082:CDS
AGTGTTGCCTCAACAGAGGA+GGG 0.649319 2.2:-58072131 MS.gene02082:CDS
TGTCAGTGTTGCCTCAACAG+AGG 0.669125 2.2:-58072135 MS.gene02082:CDS
GTTGGATCAAAACTTGCAAG+GGG 0.672219 2.2:+58072422 None:intergenic
CAACTAGATCAGTAGCAGTG+AGG 0.714780 2.2:+58072719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTACATTTAAAATTCAATA+TGG + chr2.2:58072666-58072685 None:intergenic 15.0%
!! ATGATTAAAATGGGAAATAT+TGG - chr2.2:58073351-58073370 MS.gene02082:CDS 20.0%
!! TATAGACTATAGGATATATA+AGG + chr2.2:58072630-58072649 None:intergenic 20.0%
!! TATATATGTTTCTTGATTTC+AGG - chr2.2:58072994-58073013 MS.gene02082:CDS 20.0%
!!! AAGTTTTACTATAAAAGGAT+GGG + chr2.2:58072204-58072223 None:intergenic 20.0%
!!! TGAACAAGTTTTACTATAAA+AGG + chr2.2:58072209-58072228 None:intergenic 20.0%
! AATTCAAAATCAGTAGAACT+AGG - chr2.2:58073423-58073442 MS.gene02082:CDS 25.0%
! TAGTTCTTGTCAAATTTATC+AGG + chr2.2:58073192-58073211 None:intergenic 25.0%
! TATATTATGTGATCTATGAC+TGG - chr2.2:58072398-58072417 MS.gene02082:CDS 25.0%
! TATTGCTAAAGTTGTACAAT+CGG + chr2.2:58073062-58073081 None:intergenic 25.0%
! TCTAATCTTCAAGTGAAAAA+AGG - chr2.2:58073216-58073235 MS.gene02082:intron 25.0%
!! AAAAAAAGCTTTTTGATCAG+TGG + chr2.2:58073313-58073332 None:intergenic 25.0%
!! CAAGTTTTACTATAAAAGGA+TGG + chr2.2:58072205-58072224 None:intergenic 25.0%
AAATTGGTTGACAATGCTAA+TGG + chr2.2:58073289-58073308 None:intergenic 30.0%
AAGGCTGCTATGATTAAAAT+GGG - chr2.2:58073342-58073361 MS.gene02082:CDS 30.0%
AAGTAAGTTGTGTTAAGAGT+TGG + chr2.2:58073099-58073118 None:intergenic 30.0%
ATACTTGAACAAAACAGTCA+TGG + chr2.2:58072318-58072337 None:intergenic 30.0%
GCTAACAAATAAAGAGCAAT+GGG + chr2.2:58073040-58073059 None:intergenic 30.0%
GTGAAGATACTATAGACTAT+AGG + chr2.2:58072640-58072659 None:intergenic 30.0%
TAAGGCTGCTATGATTAAAA+TGG - chr2.2:58073341-58073360 MS.gene02082:CDS 30.0%
TCAAATTTATCAGGAGTAGT+TGG + chr2.2:58073183-58073202 None:intergenic 30.0%
TTGTACAACTTTAGCAATAC+AGG - chr2.2:58073063-58073082 MS.gene02082:CDS 30.0%
! ATTGTTTTCTAATCTCTCCT+TGG + chr2.2:58073392-58073411 None:intergenic 30.0%
!! AATAGCTTTGTGTTCTATTG+TGG - chr2.2:58072135-58072154 MS.gene02082:CDS 30.0%
!!! AGCTTTTTTTGAGAGCTTTA+AGG - chr2.2:58073323-58073342 MS.gene02082:CDS 30.0%
!!! GATTTTGATTAGCAAGTGAT+TGG + chr2.2:58072790-58072809 None:intergenic 30.0%
AAACCATCTCTTCTTCCTAA+TGG + chr2.2:58072758-58072777 None:intergenic 35.0%
AAACGGTTCTTATGACTTCA+CGG + chr2.2:58072249-58072268 None:intergenic 35.0%
AATCAAAACAGCTGTGGAAA+AGG - chr2.2:58072530-58072549 MS.gene02082:CDS 35.0%
ACGAGTATCTGTCTTAGAAA+CGG + chr2.2:58072266-58072285 None:intergenic 35.0%
AGTTGGATCAAAACTTGCAA+GGG + chr2.2:58073166-58073185 None:intergenic 35.0%
AGTTGTGCATTTGAAGAGAA+AGG + chr2.2:58072178-58072197 None:intergenic 35.0%
AGTTGTGTTAAGAGTTGGAT+CGG + chr2.2:58073094-58073113 None:intergenic 35.0%
CAGAAACTCATTAAGAGGTT+TGG - chr2.2:58072494-58072513 MS.gene02082:CDS 35.0%
CCAAACAGAAACTCATTAAG+AGG - chr2.2:58072489-58072508 MS.gene02082:CDS 35.0%
CCTCTTAATGAGTTTCTGTT+TGG + chr2.2:58072492-58072511 None:intergenic 35.0%
GAAATATTGGTGTGTTAACG+GGG - chr2.2:58073364-58073383 MS.gene02082:CDS 35.0%
GAATCAAATCAAAACAGCTG+TGG - chr2.2:58072524-58072543 MS.gene02082:CDS 35.0%
GATGAAATCAAACAGTCTCA+AGG - chr2.2:58072716-58072735 MS.gene02082:CDS 35.0%
GGAAATATTGGTGTGTTAAC+GGG - chr2.2:58073363-58073382 MS.gene02082:CDS 35.0%
GGCTAACAAATAAAGAGCAA+TGG + chr2.2:58073041-58073060 None:intergenic 35.0%
GGGAAATATTGGTGTGTTAA+CGG - chr2.2:58073362-58073381 MS.gene02082:CDS 35.0%
TAGTTGGATCAAAACTTGCA+AGG + chr2.2:58073167-58073186 None:intergenic 35.0%
! AGTTGATCCAATGAGTTGAA+AGG + chr2.2:58072821-58072840 None:intergenic 35.0%
! ATTTCAGGTGCTCATACATT+TGG - chr2.2:58073009-58073028 MS.gene02082:CDS 35.0%
! CTTTTTGATCAGTGGCAAAT+TGG + chr2.2:58073305-58073324 None:intergenic 35.0%
AGCATCTTGTTCACTCACAA+TGG + chr2.2:58072466-58072485 None:intergenic 40.0%
ATGTGATCTATGACTGGAAC+AGG - chr2.2:58072404-58072423 MS.gene02082:CDS 40.0%
CAAGAGTTGTTCTCAACATC+TGG - chr2.2:58073255-58073274 MS.gene02082:intron 40.0%
GTTCCATTAGGAAGAAGAGA+TGG - chr2.2:58072752-58072771 MS.gene02082:CDS 40.0%
GTTGGATCAAAACTTGCAAG+GGG + chr2.2:58073165-58073184 None:intergenic 40.0%
GTTGTGTTAAGAGTTGGATC+GGG + chr2.2:58073093-58073112 None:intergenic 40.0%
TACTGATCTAGTTGCACTCT+CGG - chr2.2:58072874-58072893 MS.gene02082:intron 40.0%
TCAGCACAAGAAACTGTGTT+AGG + chr2.2:58072561-58072580 None:intergenic 40.0%
TCTTATGACTTCACGGACAA+TGG + chr2.2:58072242-58072261 None:intergenic 40.0%
TGCTGAAATATCATCTACGC+TGG - chr2.2:58072596-58072615 MS.gene02082:intron 40.0%
TGTGATCTATGACTGGAACA+GGG - chr2.2:58072405-58072424 MS.gene02082:CDS 40.0%
TGTTCTATTGTGGCTGTGTT+TGG - chr2.2:58072145-58072164 MS.gene02082:CDS 40.0%
TTGCGCAATATATGTCCCAA+TGG - chr2.2:58073126-58073145 MS.gene02082:CDS 40.0%
!! GTATGCTTGCTAGTCTTGTT+AGG - chr2.2:58072284-58072303 MS.gene02082:CDS 40.0%
AACAGTCTCAAGGTCCAGAT+TGG - chr2.2:58072726-58072745 MS.gene02082:CDS 45.0%
ACTGATCTAGTTGCACTCTC+GGG - chr2.2:58072875-58072894 MS.gene02082:intron 45.0%
CAACTAGATCAGTAGCAGTG+AGG + chr2.2:58072868-58072887 None:intergenic 45.0%
CCAGATTGGAAGGTTCCATT+AGG - chr2.2:58072740-58072759 MS.gene02082:CDS 45.0%
CCTAATGGAACCTTCCAATC+TGG + chr2.2:58072743-58072762 None:intergenic 45.0%
CGCAATATATGTCCCAATGG+TGG - chr2.2:58073129-58073148 MS.gene02082:CDS 45.0%
TCCAGCTCCTTTCAACTCAT+TGG - chr2.2:58072811-58072830 MS.gene02082:CDS 45.0%
! AAAGCTGCATTTGCTGCTCA+AGG - chr2.2:58072842-58072861 MS.gene02082:CDS 45.0%
! TCCAATGAGTTGAAAGGAGC+TGG + chr2.2:58072815-58072834 None:intergenic 45.0%
AAACTTGCAAGGGGAGTTCC+AGG + chr2.2:58073156-58073175 None:intergenic 50.0%
AACCATACCCTCCTCTGTTG+AGG + chr2.2:58073463-58073482 None:intergenic 50.0%
AGTGTTGCCTCAACAGAGGA+GGG - chr2.2:58073453-58073472 MS.gene02082:CDS 50.0%
GTCTCAAGGTCCAGATTGGA+AGG - chr2.2:58072730-58072749 MS.gene02082:CDS 50.0%
TGTCAGTGTTGCCTCAACAG+AGG - chr2.2:58073449-58073468 MS.gene02082:CDS 50.0%
!! ATATGTCCCAATGGTGGACC+TGG - chr2.2:58073135-58073154 MS.gene02082:CDS 50.0%
CAGTGTTGCCTCAACAGAGG+AGG - chr2.2:58073452-58073471 MS.gene02082:CDS 55.0%
GGAGTTCCAGGTCCACCATT+GGG + chr2.2:58073144-58073163 None:intergenic 55.0%
GGTGTGTTAACGGGGAACCA+AGG - chr2.2:58073372-58073391 MS.gene02082:CDS 55.0%
TGCCTCAACAGAGGAGGGTA+TGG - chr2.2:58073458-58073477 MS.gene02082:CDS 55.0%
GGGAGTTCCAGGTCCACCAT+TGG + chr2.2:58073145-58073164 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 58072112 58073494 58072112 ID=MS.gene02082
chr2.2 mRNA 58072112 58073494 58072112 ID=MS.gene02082.t1;Parent=MS.gene02082
chr2.2 exon 58073273 58073494 58073273 ID=MS.gene02082.t1.exon1;Parent=MS.gene02082.t1
chr2.2 CDS 58073273 58073494 58073273 ID=cds.MS.gene02082.t1;Parent=MS.gene02082.t1
chr2.2 exon 58072989 58073180 58072989 ID=MS.gene02082.t1.exon2;Parent=MS.gene02082.t1
chr2.2 CDS 58072989 58073180 58072989 ID=cds.MS.gene02082.t1;Parent=MS.gene02082.t1
chr2.2 exon 58072710 58072875 58072710 ID=MS.gene02082.t1.exon3;Parent=MS.gene02082.t1
chr2.2 CDS 58072710 58072875 58072710 ID=cds.MS.gene02082.t1;Parent=MS.gene02082.t1
chr2.2 exon 58072112 58072590 58072112 ID=MS.gene02082.t1.exon4;Parent=MS.gene02082.t1
chr2.2 CDS 58072112 58072590 58072112 ID=cds.MS.gene02082.t1;Parent=MS.gene02082.t1
Gene Sequence

>MS.gene02082

ATGAACTCTCTTCGTGCTGTAGCAATAGCTTTGTGTTCTATTGTGGCTGTGTTTGGAGTGTTACCTTTCTCTTCAAATGCACAACTTAACCCATCCTTTTATAGTAAAACTTGTTCAAATGTTAGTTCCATTGTCCGTGAAGTCATAAGAACCGTTTCTAAGACAGATACTCGTATGCTTGCTAGTCTTGTTAGGCTTCACTTCCATGACTGTTTTGTTCAAGTATGTATATACTATACATTCGTTTCTAAATGATTTGTATTATGCTATTGTTATAATCATAATGTATATTATGTGATCTATGACTGGAACAGGGTTGTGATGCATCAGTTTTACTGAACAAAACTGATACCATTGTGAGTGAACAAGATGCTTTTCCAAACAGAAACTCATTAAGAGGTTTGGATGTTGTGAATCAAATCAAAACAGCTGTGGAAAAGGCTTGTCCTAACACAGTTTCTTGTGCTGATATTCTTGCTCTTGCTGCTGAAATATCATCTACGCTGGTATATATTCCTTATATATCCTATAGTCTATAGTATCTTCACTCACCATATTGAATTTTAAATGTAGTTTCTGATTTATCATTATGTTTTTGTTTTGTGATGAAATCAAACAGTCTCAAGGTCCAGATTGGAAGGTTCCATTAGGAAGAAGAGATGGTTTAACAGCAAACCAATCACTTGCTAATCAAAATCTTCCAGCTCCTTTCAACTCATTGGATCAACTTAAAGCTGCATTTGCTGCTCAAGGCCTCACTGCTACTGATCTAGTTGCACTCTCGGGTATGTAACATTTTTAAATTTTTTGTTTAAAAATTTCTAATTCGTCGTTACAATGATGACGCAAATGTTACAATAATAATATGTATGATTATTGATTTATATATGTTTCTTGATTTCAGGTGCTCATACATTTGGAAGAGCCCATTGCTCTTTATTTGTTAGCCGATTGTACAACTTTAGCAATACAGGAAATCCCGATCCAACTCTTAACACAACTTACTTACAACAATTGCGCAATATATGTCCCAATGGTGGACCTGGAACTCCCCTTGCAAGTTTTGATCCAACTACTCCTGATAAATTTGACAAGAACTATTACTCTAATCTTCAAGTGAAAAAAGGTTTGCTTCAAAGTGATCAAGAGTTGTTCTCAACATCTGGTGCAGATACCATTAGCATTGTCAACCAATTTGCCACTGATCAAAAAGCTTTTTTTGAGAGCTTTAAGGCTGCTATGATTAAAATGGGAAATATTGGTGTGTTAACGGGGAACCAAGGAGAGATTAGAAAACAATGCAACTTTGTTAATTCAAAATCAGTAGAACTAGGTCTTGTCAGTGTTGCCTCAACAGAGGAGGGTATGGTTAGCTCAATGTAA
Protein sequence

>MS.gene02082.t1

MNSLRAVAIALCSIVAVFGVLPFSSNAQLNPSFYSKTCSNVSSIVREVIRTVSKTDTRMLASLVRLHFHDCFVQGCDASVLLNKTDTIVSEQDAFPNRNSLRGLDVVNQIKTAVEKACPNTVSCADILALAAEISSTLSQGPDWKVPLGRRDGLTANQSLANQNLPAPFNSLDQLKAAFAAQGLTATDLVALSGAHTFGRAHCSLFVSRLYNFSNTGNPDPTLNTTYLQQLRNICPNGGPGTPLASFDPTTPDKFDKNYYSNLQVKKGLLQSDQELFSTSGADTISIVNQFATDQKAFFESFKAAMIKMGNIGVLTGNQGEIRKQCNFVNSKSVELGLVSVASTEEGMVSSM