AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003283

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003283.t1 MTR_2g029815 96.875 352 11 0 1 352 1 352 0.0 701
MS.gene003283.t1 MTR_2g029820 90.141 355 32 1 1 352 1 355 0.0 655
MS.gene003283.t1 MTR_2g029800 82.436 353 61 1 1 352 1 353 0.0 597
MS.gene003283.t1 MTR_2g029830 83.792 327 53 0 22 348 21 347 0.0 571
MS.gene003283.t1 MTR_2g028980 74.648 355 87 1 1 352 1 355 0.0 545
MS.gene003283.t1 MTR_2g029740 72.958 355 93 2 1 352 1 355 0.0 526
MS.gene003283.t1 MTR_2g029750 71.186 354 100 1 1 352 1 354 0.0 519
MS.gene003283.t1 MTR_2g029850 71.225 351 101 0 1 351 1 351 0.0 511
MS.gene003283.t1 MTR_2g029860 70.621 354 101 3 1 352 1 353 1.64e-179 501
MS.gene003283.t1 MTR_2g029830 84.727 275 42 0 74 348 5 279 7.08e-174 484
MS.gene003283.t1 MTR_2g029910 66.764 343 112 2 11 352 12 353 1.15e-167 471
MS.gene003283.t1 MTR_2g029560 65.429 350 114 2 1 350 1 343 1.08e-163 461
MS.gene003283.t1 MTR_2g029730 64.306 353 117 3 1 352 1 345 3.37e-160 452
MS.gene003283.t1 MTR_7g093370 60.568 317 123 2 15 330 56 371 3.22e-133 385
MS.gene003283.t1 MTR_1g054205 58.654 312 128 1 20 330 15 326 8.89e-132 379
MS.gene003283.t1 MTR_4g125940 51.250 320 152 2 14 331 13 330 4.97e-108 319
MS.gene003283.t1 MTR_5g021060 50.825 303 148 1 29 331 30 331 1.63e-105 313
MS.gene003283.t1 MTR_5g017860 50.820 305 146 3 27 330 25 326 1.30e-104 310
MS.gene003283.t1 MTR_2g040000 50.163 307 148 2 28 331 28 332 3.94e-104 309
MS.gene003283.t1 MTR_5g017850 47.095 327 165 4 5 330 7 326 7.04e-103 306
MS.gene003283.t1 MTR_8g076820 48.515 303 155 1 29 331 30 331 1.27e-102 305
MS.gene003283.t1 MTR_2g084080 46.462 325 165 2 6 330 2 317 5.56e-99 296
MS.gene003283.t1 MTR_3g094650 49.045 314 149 3 15 326 14 318 1.30e-98 295
MS.gene003283.t1 MTR_4g125940 55.072 276 120 2 58 331 2 275 1.46e-98 293
MS.gene003283.t1 MTR_4g029200 49.684 316 148 4 16 330 33 338 3.05e-98 295
MS.gene003283.t1 MTR_2g084000 49.367 316 149 6 17 330 13 319 3.04e-97 291
MS.gene003283.t1 MTR_2g084110 47.452 314 156 3 17 330 13 317 4.45e-97 291
MS.gene003283.t1 MTR_1g022970 47.682 302 158 0 29 330 46 347 2.01e-96 290
MS.gene003283.t1 MTR_3g094670 48.171 328 155 4 1 326 4 318 3.95e-96 288
MS.gene003283.t1 MTR_3g466200 48.125 320 153 5 14 330 11 320 1.31e-95 287
MS.gene003283.t1 MTR_4g083710 47.840 324 159 4 10 330 8 324 1.85e-95 287
MS.gene003283.t1 MTR_3g072190 45.652 322 166 2 9 330 6 318 4.56e-95 286
MS.gene003283.t1 MTR_2g084020 46.178 314 161 2 17 330 13 318 4.92e-95 286
MS.gene003283.t1 MTR_7g072510 44.444 324 163 3 7 330 6 312 5.20e-95 285
MS.gene003283.t1 MTR_5g083860 46.130 323 163 3 10 330 12 325 1.50e-94 285
MS.gene003283.t1 MTR_4g029170 47.634 317 155 4 16 330 14 321 2.71e-94 284
MS.gene003283.t1 MTR_3g094630 48.494 332 156 4 1 330 4 322 3.11e-94 284
MS.gene003283.t1 MTR_2g084090 46.497 314 160 2 17 330 13 318 2.68e-93 281
MS.gene003283.t1 MTR_5g074970 46.341 328 163 4 7 330 8 326 3.35e-93 281
MS.gene003283.t1 MTR_2g084010 45.860 314 162 2 17 330 13 318 4.32e-93 281
MS.gene003283.t1 MTR_4g029190 48.368 337 152 7 7 330 13 340 5.33e-92 279
MS.gene003283.t1 MTR_4g029180 48.505 301 144 4 32 330 30 321 6.31e-92 278
MS.gene003283.t1 MTR_4g046713 43.963 323 173 4 9 330 11 326 1.56e-90 274
MS.gene003283.t1 MTR_7g072480 45.652 322 159 4 9 330 11 316 9.75e-90 272
MS.gene003283.t1 MTR_4g122640 46.205 303 158 3 29 330 38 336 1.40e-89 272
MS.gene003283.t1 MTR_2g088770 44.201 319 172 5 15 331 12 326 1.28e-88 270
MS.gene003283.t1 MTR_1g115900 43.614 321 170 5 13 331 11 322 1.39e-88 270
MS.gene003283.t1 MTR_5g014100 46.865 303 157 2 32 330 29 331 2.09e-87 266
MS.gene003283.t1 MTR_5g049280 42.105 342 183 7 1 331 1 338 2.31e-87 267
MS.gene003283.t1 MTR_2g029880 61.972 213 70 3 139 351 7 208 2.33e-87 262
MS.gene003283.t1 MTR_4g074995 46.082 319 149 5 15 330 10 308 3.33e-87 265
MS.gene003283.t1 MTR_5g074740 44.000 325 171 4 9 330 5 321 5.65e-87 265
MS.gene003283.t1 MTR_5g074760 44.375 320 167 4 14 330 10 321 7.91e-87 265
MS.gene003283.t1 MTR_7g107520 43.987 316 171 4 15 330 11 320 3.58e-86 263
MS.gene003283.t1 MTR_5g074710 44.615 325 169 4 9 330 5 321 7.22e-86 262
MS.gene003283.t1 MTR_4g114210 42.813 327 174 6 9 330 2 320 9.10e-86 262
MS.gene003283.t1 MTR_2g008710 42.638 326 174 6 9 330 9 325 1.15e-84 259
MS.gene003283.t1 MTR_3g466180 44.805 308 161 2 23 330 25 323 2.10e-84 259
MS.gene003283.t1 MTR_5g074860 43.558 326 171 6 7 329 9 324 6.13e-84 258
MS.gene003283.t1 MTR_7g086820 42.810 306 166 5 27 332 18 314 1.24e-83 256
MS.gene003283.t1 MTR_3g092990 42.006 319 182 2 14 331 11 327 2.27e-83 256
MS.gene003283.t1 MTR_4g031140 41.026 312 179 3 25 336 24 330 2.62e-83 256
MS.gene003283.t1 MTR_4g030890 42.395 309 173 3 24 332 95 398 4.06e-83 258
MS.gene003283.t1 MTR_3g467600 45.000 320 166 4 14 330 12 324 1.27e-82 254
MS.gene003283.t1 MTR_6g043240 44.669 347 158 11 16 348 20 346 1.71e-82 254
MS.gene003283.t1 MTR_4g074990 42.633 319 154 4 15 330 13 305 1.49e-81 251
MS.gene003283.t1 MTR_1g101830 42.056 321 176 5 10 330 12 322 4.82e-80 247
MS.gene003283.t1 MTR_5g022870 41.390 331 172 9 6 330 2 316 5.30e-80 247
MS.gene003283.t1 MTR_4g133800 40.950 337 180 7 3 330 7 333 9.00e-80 247
MS.gene003283.t1 MTR_1g009750 44.951 307 161 5 28 330 26 328 1.88e-79 246
MS.gene003283.t1 MTR_5g016010 41.141 333 187 5 1 329 1 328 1.59e-78 244
MS.gene003283.t1 MTR_6g043280 42.767 318 164 5 23 332 27 334 1.80e-78 244
MS.gene003283.t1 MTR_7g026990 39.157 332 189 6 3 331 2 323 1.84e-78 243
MS.gene003283.t1 MTR_8g075100 42.444 311 163 7 24 330 21 319 2.77e-78 243
MS.gene003283.t1 MTR_1g038680 43.234 303 164 6 33 330 33 332 1.34e-77 241
MS.gene003283.t1 MTR_1g086320 40.719 334 190 5 1 330 4 333 1.44e-77 241
MS.gene003283.t1 MTR_4g087965 42.623 305 168 5 28 327 41 343 3.61e-77 241
MS.gene003283.t1 MTR_3g072190 47.490 259 127 2 72 330 2 251 6.31e-77 237
MS.gene003283.t1 MTR_2g437770 42.763 304 162 6 29 331 50 342 9.71e-77 239
MS.gene003283.t1 MTR_1g086490 40.469 341 188 5 1 330 4 340 1.50e-76 239
MS.gene003283.t1 MTR_4g127670 45.215 303 156 5 28 326 23 319 2.87e-76 238
MS.gene003283.t1 MTR_4g095450 42.202 327 175 6 5 326 3 320 4.24e-76 237
MS.gene003283.t1 MTR_6g027440 40.867 323 178 7 10 330 3 314 5.91e-76 237
MS.gene003283.t1 MTR_7g029030 43.750 336 164 11 4 330 1 320 6.08e-75 234
MS.gene003283.t1 MTR_4g074980 42.405 316 148 6 15 330 13 294 8.74e-74 230
MS.gene003283.t1 MTR_7g086870 41.368 307 164 7 27 331 20 312 3.95e-72 227
MS.gene003283.t1 MTR_1g025980 41.967 305 162 6 29 329 24 317 4.20e-72 227
MS.gene003283.t1 MTR_2g008160 40.836 311 172 6 25 330 20 323 2.62e-71 225
MS.gene003283.t1 MTR_4g132490 38.272 324 189 5 9 330 13 327 9.56e-71 224
MS.gene003283.t1 MTR_4g074980 46.185 249 123 4 15 260 13 253 1.40e-70 221
MS.gene003283.t1 MTR_3g092990 39.498 319 179 3 14 331 11 316 1.92e-70 223
MS.gene003283.t1 MTR_1g077000 37.725 334 191 7 1 330 7 327 3.72e-70 222
MS.gene003283.t1 MTR_1g090760 38.988 336 193 7 1 330 1 330 5.91e-70 222
MS.gene003283.t1 MTR_6g043460 41.860 301 160 7 29 326 36 324 1.01e-69 222
MS.gene003283.t1 MTR_1g009750 41.694 307 154 6 28 330 26 311 4.26e-69 219
MS.gene003283.t1 MTR_2g099175 37.273 330 194 7 6 330 14 335 1.22e-68 219
MS.gene003283.t1 MTR_0155s0040 38.889 306 172 6 26 330 24 315 1.90e-68 218
MS.gene003283.t1 MTR_5g033470 39.103 312 177 7 27 330 71 377 4.34e-67 216
MS.gene003283.t1 MTR_2g008730 38.199 322 163 6 14 330 11 301 9.01e-64 205
MS.gene003283.t1 MTR_8g062780 37.621 311 186 4 25 331 19 325 2.50e-63 205
MS.gene003283.t1 MTR_5g074860 37.117 326 153 5 7 329 9 285 3.50e-63 203
MS.gene003283.t1 MTR_3g105790 39.032 310 179 4 24 330 20 322 5.20e-62 201
MS.gene003283.t1 MTR_2g067440 34.561 353 191 7 15 331 40 388 8.99e-62 202
MS.gene003283.t1 MTR_1g066710 38.511 309 177 5 27 331 25 324 4.24e-61 199
MS.gene003283.t1 MTR_0286s0010 37.742 310 184 6 25 330 30 334 1.17e-60 198
MS.gene003283.t1 MTR_6g008075 37.742 310 184 6 25 330 30 334 1.17e-60 198
MS.gene003283.t1 MTR_2g077990 37.015 335 172 9 25 326 74 402 9.19e-60 198
MS.gene003283.t1 MTR_2g078610 36.716 335 173 9 25 326 74 402 1.09e-59 197
MS.gene003283.t1 MTR_1g066380 37.338 308 182 4 27 331 25 324 3.86e-59 194
MS.gene003283.t1 MTR_1g066640 37.338 308 182 4 27 331 25 324 7.74e-58 190
MS.gene003283.t1 MTR_4g132110 36.482 307 184 4 32 335 35 333 3.91e-57 189
MS.gene003283.t1 MTR_4g132110 36.859 312 181 6 32 335 35 338 1.12e-56 188
MS.gene003283.t1 MTR_1g066680 37.013 308 182 5 27 331 25 323 2.62e-56 186
MS.gene003283.t1 MTR_2g078280 36.615 325 167 9 25 316 74 392 4.05e-55 185
MS.gene003283.t1 MTR_0147s0010 33.642 324 179 4 26 329 74 381 6.10e-55 184
MS.gene003283.t1 MTR_2g008160 35.691 311 153 6 25 330 20 288 2.37e-54 180
MS.gene003283.t1 MTR_2g067450 36.893 309 183 7 25 329 9 309 6.53e-54 180
MS.gene003283.t1 MTR_1g066380 38.168 262 151 4 73 331 3 256 1.72e-47 161
MS.gene003283.t1 MTR_3g072210 47.644 191 91 4 141 330 56 238 2.33e-47 160
MS.gene003283.t1 MTR_2g008160 44.944 178 94 3 25 202 20 193 7.32e-47 158
MS.gene003283.t1 MTR_3g105790 39.496 238 138 3 96 330 12 246 3.38e-44 152
MS.gene003283.t1 MTR_5g074700 39.224 232 116 5 102 330 5 214 5.70e-43 148
MS.gene003283.t1 MTR_7g072490 37.349 249 93 4 75 323 2 187 9.92e-40 140
MS.gene003283.t1 MTR_3g072260 53.333 105 49 0 28 132 25 129 6.82e-34 122
MS.gene003283.t1 MTR_2g029930 57.522 113 20 3 14 112 4 102 2.74e-31 114
MS.gene003283.t1 MTR_5g058120 40.491 163 84 3 164 326 6 155 1.54e-28 111
MS.gene003283.t1 MTR_2g077980 30.605 281 150 11 91 331 11 286 1.25e-26 107
MS.gene003283.t1 MTR_2g078560 30.973 226 123 5 135 329 96 319 4.38e-26 106
MS.gene003283.t1 MTR_7g086790 33.161 193 105 5 76 267 17 186 3.67e-23 95.5
MS.gene003283.t1 MTR_3g462850 38.356 146 79 6 193 331 9 150 4.48e-22 91.3
MS.gene003283.t1 MTR_1g089005 41.441 111 58 2 29 133 15 124 1.13e-18 82.4
MS.gene003283.t1 MTR_1g098320 49.398 83 40 1 251 333 47 127 1.13e-18 82.0
MS.gene003283.t1 MTR_6g048160 53.521 71 29 2 68 138 22 88 6.74e-17 75.5
MS.gene003283.t1 MTR_4g012865 46.479 71 38 0 26 96 74 144 2.84e-16 75.5
MS.gene003283.t1 MTR_4g114220 47.887 71 27 2 63 133 37 97 4.28e-15 72.0
MS.gene003283.t1 MTR_5g074770 39.796 98 53 2 232 329 17 108 6.50e-15 70.5
MS.gene003283.t1 MTR_7g107500 41.414 99 54 3 232 330 3 97 9.12e-15 69.7
MS.gene003283.t1 MTR_7g086810 32.231 121 56 1 27 147 4 98 8.72e-14 70.5
MS.gene003283.t1 MTR_3g088160 28.643 199 114 6 122 314 180 356 1.55e-13 71.6
MS.gene003283.t1 MTR_3g088160 28.643 199 114 6 122 314 180 356 2.34e-13 71.2
MS.gene003283.t1 MTR_3g107060 27.007 274 148 9 44 314 91 315 3.51e-12 67.0
MS.gene003283.t1 MTR_4g031040 27.429 175 83 3 88 262 1 131 3.07e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003283.t1 AT5G06720 56.698 321 138 1 10 330 14 333 1.94e-131 379
MS.gene003283.t1 AT5G06730 54.303 337 154 0 14 350 18 354 2.23e-131 380
MS.gene003283.t1 AT2G38380 53.757 346 149 3 8 352 14 349 6.43e-130 375
MS.gene003283.t1 AT2G38390 53.636 330 146 2 24 352 26 349 9.52e-128 370
MS.gene003283.t1 AT3G49120 53.736 348 151 4 7 352 14 353 9.14e-126 365
MS.gene003283.t1 AT3G32980 55.455 330 141 3 25 352 27 352 1.35e-123 360
MS.gene003283.t1 AT3G49110 55.152 330 142 3 25 352 29 354 3.19e-122 356
MS.gene003283.t1 AT4G08770 55.000 320 142 2 25 342 20 339 5.96e-122 355
MS.gene003283.t1 AT4G08780 53.438 320 147 2 25 342 20 339 2.69e-118 346
MS.gene003283.t1 AT5G19880 52.038 319 147 3 15 330 14 329 1.61e-114 336
MS.gene003283.t1 AT5G19890 52.117 307 139 4 27 331 28 328 2.00e-105 312
MS.gene003283.t1 AT4G36430 50.325 308 152 1 24 331 25 331 2.58e-105 312
MS.gene003283.t1 AT2G18140 48.000 325 164 2 6 330 16 335 6.94e-105 311
MS.gene003283.t1 AT5G66390 49.026 308 156 1 23 330 27 333 1.07e-104 311
MS.gene003283.t1 AT2G18150 50.000 304 151 1 27 330 34 336 2.67e-104 310
MS.gene003283.t1 AT1G14550 50.164 305 144 4 27 330 24 321 4.10e-100 299
MS.gene003283.t1 AT5G05340 48.710 310 148 3 23 330 24 324 1.14e-99 298
MS.gene003283.t1 AT1G44970 48.026 304 158 0 27 330 43 346 3.55e-97 292
MS.gene003283.t1 AT1G14540 48.580 317 156 3 14 330 6 315 6.90e-96 288
MS.gene003283.t1 AT3G50990 47.557 307 160 1 24 330 36 341 9.54e-96 288
MS.gene003283.t1 AT1G49570 46.230 305 159 3 27 328 46 348 3.34e-95 287
MS.gene003283.t1 AT4G16270 46.865 303 156 4 29 330 50 348 9.06e-90 273
MS.gene003283.t1 AT1G68850 45.130 308 163 5 29 331 30 336 7.84e-88 268
MS.gene003283.t1 AT5G58400 45.593 329 163 5 5 330 10 325 2.54e-87 266
MS.gene003283.t1 AT5G58390 45.570 316 160 4 14 326 6 312 1.07e-86 264
MS.gene003283.t1 AT1G71695 45.511 323 158 7 29 348 44 351 7.16e-86 264
MS.gene003283.t1 AT2G22420 41.987 312 176 3 29 340 23 329 1.15e-84 259
MS.gene003283.t1 AT2G41480 42.508 327 173 6 12 330 9 328 1.22e-84 259
MS.gene003283.t1 AT2G35380 47.351 302 155 3 33 330 34 335 1.96e-84 259
MS.gene003283.t1 AT2G18980 45.342 322 163 6 15 330 9 323 1.09e-83 257
MS.gene003283.t1 AT3G03670 42.056 321 179 3 10 330 8 321 4.03e-83 255
MS.gene003283.t1 AT3G21770 42.587 317 175 6 17 331 18 329 1.02e-82 254
MS.gene003283.t1 AT4G11290 40.615 325 188 4 8 330 5 326 2.34e-82 253
MS.gene003283.t1 AT4G30170 45.130 308 158 5 27 330 25 325 8.76e-82 252
MS.gene003283.t1 AT1G05260 40.841 333 188 7 1 331 1 326 1.18e-81 252
MS.gene003283.t1 AT5G14130 43.396 318 171 5 18 330 17 330 1.51e-81 251
MS.gene003283.t1 AT5G14130 43.396 318 171 5 18 330 58 371 3.76e-81 252
MS.gene003283.t1 AT5G15180 40.373 322 183 6 10 330 16 329 6.17e-81 250
MS.gene003283.t1 AT5G51890 42.378 328 173 8 8 330 6 322 9.66e-80 247
MS.gene003283.t1 AT4G37530 44.516 310 165 5 25 330 23 329 1.42e-79 246
MS.gene003283.t1 AT5G64120 40.588 340 180 8 1 330 1 328 1.95e-79 246
MS.gene003283.t1 AT5G17820 40.379 317 176 6 14 330 10 313 5.72e-79 244
MS.gene003283.t1 AT3G01190 41.176 323 181 7 9 330 7 321 9.80e-79 244
MS.gene003283.t1 AT5G67400 41.104 326 185 4 9 330 7 329 1.10e-78 244
MS.gene003283.t1 AT4G25980 40.979 327 178 6 9 330 10 326 2.51e-78 243
MS.gene003283.t1 AT5G17820 40.379 317 176 6 14 330 63 366 1.16e-77 243
MS.gene003283.t1 AT1G05240 43.366 309 159 7 29 330 26 325 1.50e-77 241
MS.gene003283.t1 AT1G05250 43.366 309 159 7 29 330 26 325 1.50e-77 241
MS.gene003283.t1 AT3G49960 42.025 326 179 5 9 330 10 329 2.08e-77 241
MS.gene003283.t1 AT5G39580 41.088 331 179 7 1 330 4 319 2.31e-76 238
MS.gene003283.t1 AT4G37520 41.558 308 173 5 27 330 25 329 3.50e-73 230
MS.gene003283.t1 AT5G42180 39.441 322 187 5 8 329 3 316 5.59e-72 226
MS.gene003283.t1 AT4G37520 41.234 308 171 6 27 330 25 326 1.37e-71 226
MS.gene003283.t1 AT5G64110 44.040 302 156 7 33 330 38 330 4.10e-71 225
MS.gene003283.t1 AT2G39040 41.534 313 168 9 27 330 44 350 6.74e-70 222
MS.gene003283.t1 AT4G31760 39.159 309 180 3 24 330 24 326 1.78e-69 221
MS.gene003283.t1 AT5G64100 41.528 301 163 7 33 330 41 331 2.48e-69 220
MS.gene003283.t1 AT4G33420 37.654 324 188 7 8 330 15 325 4.06e-69 219
MS.gene003283.t1 AT2G24800 41.042 307 172 4 27 330 29 329 4.51e-69 219
MS.gene003283.t1 AT4G37530 46.512 258 133 4 25 278 23 279 5.24e-69 218
MS.gene003283.t1 AT1G77100 39.210 329 184 7 7 330 2 319 1.15e-68 218
MS.gene003283.t1 AT5G47000 37.994 329 193 6 9 334 14 334 1.98e-68 218
MS.gene003283.t1 AT5G40150 40.506 316 177 5 18 330 21 328 2.07e-68 218
MS.gene003283.t1 AT4G33420 37.654 324 188 7 8 330 62 372 2.54e-68 219
MS.gene003283.t1 AT5G24070 39.404 302 170 6 35 331 43 336 8.12e-68 217
MS.gene003283.t1 AT4G17690 39.482 309 176 5 29 334 26 326 1.09e-67 216
MS.gene003283.t1 AT4G26010 39.252 321 173 8 14 330 7 309 3.09e-67 214
MS.gene003283.t1 AT4G26010 38.889 324 176 8 11 330 32 337 4.93e-67 214
MS.gene003283.t1 AT2G34060 38.961 308 179 6 26 327 39 343 4.94e-67 215
MS.gene003283.t1 AT3G28200 39.677 310 175 6 24 330 16 316 1.49e-66 213
MS.gene003283.t1 AT1G24110 38.298 329 182 9 11 330 6 322 1.22e-65 211
MS.gene003283.t1 AT2G43480 37.278 338 187 9 10 330 6 335 1.47e-65 211
MS.gene003283.t1 AT1G30870 38.710 310 173 7 29 333 51 348 1.15e-64 209
MS.gene003283.t1 AT4G33870 33.631 336 185 5 27 327 66 398 2.08e-64 210
MS.gene003283.t1 AT1G34510 38.602 329 180 8 4 330 1 309 2.57e-63 204
MS.gene003283.t1 AT2G35380 46.154 247 129 3 88 330 1 247 6.41e-62 198
MS.gene003283.t1 AT5G22410 35.604 323 191 8 9 326 11 321 5.72e-61 199
MS.gene003283.t1 AT4G21960 37.294 303 179 4 32 331 34 328 2.22e-59 194
MS.gene003283.t1 AT3G17070 37.685 337 182 11 7 330 18 339 7.77e-57 188
MS.gene003283.t1 AT2G37130 35.922 309 186 5 26 330 27 327 1.44e-54 182
MS.gene003283.t1 AT2G37130 35.974 303 182 5 32 330 2 296 1.68e-53 178
MS.gene003283.t1 AT4G25980 41.202 233 124 5 9 236 55 279 2.47e-50 170
MS.gene003283.t1 AT5G39580 39.496 238 122 6 1 231 4 226 9.95e-42 146
MS.gene003283.t1 AT3G17070 36.765 272 147 10 71 330 18 276 3.74e-41 145
MS.gene003283.t1 AT2G24800 41.279 172 97 1 27 198 29 196 1.41e-36 132
MS.gene003283.t1 AT4G08390 26.019 319 165 12 27 314 83 361 1.04e-13 72.0
MS.gene003283.t1 AT4G08390 26.019 319 165 12 27 314 84 362 1.11e-13 72.0
MS.gene003283.t1 AT4G08390 26.019 319 165 12 27 314 84 362 1.11e-13 72.0
MS.gene003283.t1 AT4G08390 26.019 319 165 12 27 314 84 362 1.11e-13 72.0
MS.gene003283.t1 AT1G77490 26.236 263 156 9 63 314 106 341 5.96e-13 70.1
MS.gene003283.t1 AT1G77490 26.236 263 156 9 63 314 106 341 8.24e-13 69.3
MS.gene003283.t1 AT3G09640 25.116 215 115 7 103 313 74 246 1.23e-12 67.4
MS.gene003283.t1 AT3G09640 25.116 215 115 7 103 313 74 246 1.23e-12 67.4
MS.gene003283.t1 AT3G42570 34.021 97 63 1 101 196 53 149 2.13e-11 62.0

Find 62 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAACCTCTTAAAGAGTTTC+TGG 0.093433 2.4:+59722952 None:intergenic
TAAGGCTGCTATGATTAAAA+TGG 0.162076 2.4:-59722123 MS.gene003283:CDS
TGAAAGGAGCTGGAAGATTT+TGG 0.235109 2.4:+59722647 None:intergenic
CAGAAACTCTTTAAGAGGTT+TGG 0.286094 2.4:-59722951 MS.gene003283:CDS
GGAAATATTGGTGTGTTAAC+CGG 0.297989 2.4:-59722101 MS.gene003283:CDS
TCCAGCTCCTTTCAACTCAT+TGG 0.300263 2.4:-59722638 MS.gene003283:CDS
TCTAATCTCTCCTTGGTTCC+CGG 0.308228 2.4:+59722082 None:intergenic
AAACCATCTCTTCTTCCTAA+TGG 0.312841 2.4:+59722694 None:intergenic
TGCTGTATTGTAGTTGTGTT+TGG 0.319296 2.4:-59723299 MS.gene003283:CDS
TAGTTCTTGTCAAATTTATC+AGG 0.341189 2.4:+59722275 None:intergenic
GTATGCTTGCTAGCCTTGTT+AGG 0.342526 2.4:-59723160 MS.gene003283:CDS
ATTGCAGGTGCTCATACATT+TGG 0.362964 2.4:-59722455 MS.gene003283:intron
CGGACAATGGAACTAACATT+TGG 0.382367 2.4:+59723218 None:intergenic
CCAACCAGAAACTCTTTAAG+AGG 0.385188 2.4:-59722956 MS.gene003283:CDS
TCAAATTTATCAGGAGTAGT+TGG 0.385860 2.4:+59722284 None:intergenic
ATGATTAAAATGGGAAATAT+TGG 0.387468 2.4:-59722113 MS.gene003283:CDS
AAAATTGTTGACAATACTAA+TGG 0.398283 2.4:+59722178 None:intergenic
AGTTGTGCATTTGAAGAGTA+AGG 0.410720 2.4:+59723269 None:intergenic
CCTAATGGAACTTTCCAATC+AGG 0.411319 2.4:+59722709 None:intergenic
AACAGTCTCAAGGTCCTGAT+TGG 0.414733 2.4:-59722723 MS.gene003283:intron
CCTGATTGGAAAGTTCCATT+AGG 0.439711 2.4:-59722709 MS.gene003283:CDS
AAACTCGCAAGGGGAGTTCC+AGG 0.440371 2.4:+59722311 None:intergenic
CAAGAGTTGTTCTCAACGTC+TGG 0.458030 2.4:-59722209 MS.gene003283:CDS
AATCAAAACAGCTGTTGAAA+AGG 0.464346 2.4:-59722915 MS.gene003283:CDS
AAGGCTGCTATGATTAAAAT+GGG 0.470087 2.4:-59722122 MS.gene003283:CDS
TACTGATCTAGTTGCACTCT+CGG 0.473292 2.4:-59722575 MS.gene003283:CDS
TCAGCACAAGAAACTGTGTT+AGG 0.474603 2.4:+59722887 None:intergenic
AAACGGTTCTTATGACTTCA+CGG 0.480660 2.4:+59723198 None:intergenic
AAGTAAGTTGTGTTAAGAGT+TGG 0.480928 2.4:+59722368 None:intergenic
TCCAATGAGTTGAAAGGAGC+TGG 0.482187 2.4:+59722637 None:intergenic
CCTCTTAAAGAGTTTCTGGT+TGG 0.496801 2.4:+59722956 None:intergenic
ATTGTACAACTTCAGCAATA+CGG 0.498560 2.4:-59722402 MS.gene003283:CDS
ATATGTCCCAATGGTGGACC+TGG 0.507847 2.4:-59722329 MS.gene003283:CDS
GGAGTTCCAGGTCCACCATT+GGG 0.508361 2.4:+59722323 None:intergenic
TCTTATGACTTCACGGACAA+TGG 0.512577 2.4:+59723205 None:intergenic
AGTTGTGTTAAGAGTTGGAT+CGG 0.517053 2.4:+59722373 None:intergenic
GAAATATTGGTGTGTTAACC+GGG 0.517789 2.4:-59722100 MS.gene003283:CDS
TGCCTCAACAGAGGAGGGTA+TGG 0.518844 2.4:-59722006 MS.gene003283:CDS
TTGTACAACTTCAGCAATAC+GGG 0.524211 2.4:-59722401 MS.gene003283:CDS
GGGAGTTCCAGGTCCACCAT+TGG 0.527464 2.4:+59722322 None:intergenic
AGTTGATCCAATGAGTTGAA+AGG 0.537741 2.4:+59722631 None:intergenic
AAAGCTGCATTTGCTGCTCA+AGG 0.545185 2.4:-59722607 MS.gene003283:CDS
CGCAATATATGTCCCAATGG+TGG 0.550346 2.4:-59722335 MS.gene003283:CDS
GTTGTGTTAAGAGTTGGATC+GGG 0.555195 2.4:+59722374 None:intergenic
ACGAGTATCTGTCTTAGAAA+CGG 0.557887 2.4:+59723181 None:intergenic
GTTCCATTAGGAAGAAGAGA+TGG 0.569226 2.4:-59722697 MS.gene003283:CDS
ACTGATCTAGTTGCACTCTC+GGG 0.569804 2.4:-59722574 MS.gene003283:intron
ATACTTGAACAAAACAGTCA+TGG 0.583464 2.4:+59723129 None:intergenic
TAGTTGGATCAAAACTCGCA+AGG 0.583580 2.4:+59722300 None:intergenic
AACTCAAAATCAGTAGAACT+AGG 0.583865 2.4:-59722041 MS.gene003283:CDS
CAATGTTGCCTCAACAGAGG+AGG 0.587955 2.4:-59722012 MS.gene003283:CDS
AACCATACCCTCCTCTGTTG+AGG 0.590356 2.4:+59722004 None:intergenic
AGTTGGATCAAAACTCGCAA+GGG 0.596170 2.4:+59722301 None:intergenic
CATGGAAGTGAAGCCTAACA+AGG 0.597892 2.4:+59723147 None:intergenic
GATGAAATCAAACAGTCTCA+AGG 0.599716 2.4:-59722733 MS.gene003283:intron
TGCTGAATTATCATCTACAC+TGG 0.600987 2.4:-59722849 MS.gene003283:intron
TTGCGCAATATATGTCCCAA+TGG 0.625828 2.4:-59722338 MS.gene003283:CDS
AATGTTGCCTCAACAGAGGA+GGG 0.631884 2.4:-59722011 MS.gene003283:CDS
GGTGTGTTAACCGGGAACCA+AGG 0.643371 2.4:-59722092 MS.gene003283:CDS
GTTGGATCAAAACTCGCAAG+GGG 0.674515 2.4:+59722302 None:intergenic
TGTCAATGTTGCCTCAACAG+AGG 0.676561 2.4:-59722015 MS.gene003283:CDS
CAACTAGATCAGTAGTACTG+AGG 0.702013 2.4:+59722584 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTGTTTAAAAATTTCTAAT+TGG - chr2.4:59722792-59722811 MS.gene003283:intron 10.0%
!!! ACTACATTTAAAATTCAATA+TGG + chr2.4:59722541-59722560 None:intergenic 15.0%
!! AAAATTGTTGACAATACTAA+TGG + chr2.4:59723149-59723168 None:intergenic 20.0%
!! ATGAAGATACTATATACTAT+AGG + chr2.4:59722515-59722534 None:intergenic 20.0%
!! ATGATTAAAATGGGAAATAT+TGG - chr2.4:59723211-59723230 MS.gene003283:CDS 20.0%
!! TAAATTATGTGATCTATGAT+TGG - chr2.4:59722277-59722296 MS.gene003283:CDS 20.0%
! ATACTATATACTATAGGAAG+AGG + chr2.4:59722509-59722528 None:intergenic 25.0%
! TAGTTCTTGTCAAATTTATC+AGG + chr2.4:59723052-59723071 None:intergenic 25.0%
! TCTAATCTTCAAGTGAAAAA+AGG - chr2.4:59723076-59723095 MS.gene003283:intron 25.0%
AACTCAAAATCAGTAGAACT+AGG - chr2.4:59723283-59723302 MS.gene003283:CDS 30.0%
AAGGCTGCTATGATTAAAAT+GGG - chr2.4:59723202-59723221 MS.gene003283:CDS 30.0%
AAGTAAGTTGTGTTAAGAGT+TGG + chr2.4:59722959-59722978 None:intergenic 30.0%
AATCAAAACAGCTGTTGAAA+AGG - chr2.4:59722409-59722428 MS.gene003283:CDS 30.0%
ATACTTGAACAAAACAGTCA+TGG + chr2.4:59722198-59722217 None:intergenic 30.0%
ATTGTACAACTTCAGCAATA+CGG - chr2.4:59722922-59722941 MS.gene003283:CDS 30.0%
TAAGGCTGCTATGATTAAAA+TGG - chr2.4:59723201-59723220 MS.gene003283:CDS 30.0%
TCAAATTTATCAGGAGTAGT+TGG + chr2.4:59723043-59723062 None:intergenic 30.0%
TCTATATATGTTTCCATTGC+AGG - chr2.4:59722854-59722873 MS.gene003283:CDS 30.0%
! ATTGTTTTCTAATCTCTCCT+TGG + chr2.4:59723252-59723271 None:intergenic 30.0%
!! CAAGTTTTGCTATAAAACGA+TGG + chr2.4:59722085-59722104 None:intergenic 30.0%
!!! AGCTTTTTTTGAGAGCTTTA+AGG - chr2.4:59723183-59723202 MS.gene003283:CDS 30.0%
AAACCATCTCTTCTTCCTAA+TGG + chr2.4:59722633-59722652 None:intergenic 35.0%
AAACGGTTCTTATGACTTCA+CGG + chr2.4:59722129-59722148 None:intergenic 35.0%
ACGAGTATCTGTCTTAGAAA+CGG + chr2.4:59722146-59722165 None:intergenic 35.0%
AGTTGTGCATTTGAAGAGTA+AGG + chr2.4:59722058-59722077 None:intergenic 35.0%
AGTTGTGTTAAGAGTTGGAT+CGG + chr2.4:59722954-59722973 None:intergenic 35.0%
ATGTGATCTATGATTGGAAC+AGG - chr2.4:59722283-59722302 MS.gene003283:CDS 35.0%
CAAACCTCTTAAAGAGTTTC+TGG + chr2.4:59722375-59722394 None:intergenic 35.0%
GAAATATTGGTGTGTTAACC+GGG - chr2.4:59723224-59723243 MS.gene003283:CDS 35.0%
GATGAAATCAAACAGTCTCA+AGG - chr2.4:59722591-59722610 MS.gene003283:CDS 35.0%
GCAAGTCATTTACAAGTAGA+AGG + chr2.4:59722231-59722250 None:intergenic 35.0%
GGAAATATTGGTGTGTTAAC+CGG - chr2.4:59723223-59723242 MS.gene003283:CDS 35.0%
TGCTGAATTATCATCTACAC+TGG - chr2.4:59722475-59722494 MS.gene003283:intron 35.0%
TGCTGTATTGTAGTTGTGTT+TGG - chr2.4:59722025-59722044 MS.gene003283:CDS 35.0%
TGTGATCTATGATTGGAACA+GGG - chr2.4:59722284-59722303 MS.gene003283:CDS 35.0%
TTGTACAACTTCAGCAATAC+GGG - chr2.4:59722923-59722942 MS.gene003283:CDS 35.0%
! AGTTGATCCAATGAGTTGAA+AGG + chr2.4:59722696-59722715 None:intergenic 35.0%
! CAGAAACTCTTTAAGAGGTT+TGG - chr2.4:59722373-59722392 MS.gene003283:CDS 35.0%
!!! GATTTTGGTTAGCAAGTGAT+TGG + chr2.4:59722665-59722684 None:intergenic 35.0%
AAATGTATGAGCACCTGCAA+TGG + chr2.4:59722870-59722889 None:intergenic 40.0%
AGTTGGATCAAAACTCGCAA+GGG + chr2.4:59723026-59723045 None:intergenic 40.0%
ATTGCAGGTGCTCATACATT+TGG - chr2.4:59722869-59722888 MS.gene003283:CDS 40.0%
CAACTAGATCAGTAGTACTG+AGG + chr2.4:59722743-59722762 None:intergenic 40.0%
CCAACCAGAAACTCTTTAAG+AGG - chr2.4:59722368-59722387 MS.gene003283:CDS 40.0%
CCTAATGGAACTTTCCAATC+AGG + chr2.4:59722618-59722637 None:intergenic 40.0%
CCTGATTGGAAAGTTCCATT+AGG - chr2.4:59722615-59722634 MS.gene003283:CDS 40.0%
CGGACAATGGAACTAACATT+TGG + chr2.4:59722109-59722128 None:intergenic 40.0%
GTTCCATTAGGAAGAAGAGA+TGG - chr2.4:59722627-59722646 MS.gene003283:CDS 40.0%
GTTGTGTTAAGAGTTGGATC+GGG + chr2.4:59722953-59722972 None:intergenic 40.0%
TACTGATCTAGTTGCACTCT+CGG - chr2.4:59722749-59722768 MS.gene003283:intron 40.0%
TAGTTGGATCAAAACTCGCA+AGG + chr2.4:59723027-59723046 None:intergenic 40.0%
TCAGCACAAGAAACTGTGTT+AGG + chr2.4:59722440-59722459 None:intergenic 40.0%
TCTTATGACTTCACGGACAA+TGG + chr2.4:59722122-59722141 None:intergenic 40.0%
TTGCGCAATATATGTCCCAA+TGG - chr2.4:59722986-59723005 MS.gene003283:CDS 40.0%
! TGAAAGGAGCTGGAAGATTT+TGG + chr2.4:59722680-59722699 None:intergenic 40.0%
!! CCTCTTAAAGAGTTTCTGGT+TGG + chr2.4:59722371-59722390 None:intergenic 40.0%
AACAGTCTCAAGGTCCTGAT+TGG - chr2.4:59722601-59722620 MS.gene003283:CDS 45.0%
AATGTTGCCTCAACAGAGGA+GGG - chr2.4:59723313-59723332 MS.gene003283:CDS 45.0%
ACTGATCTAGTTGCACTCTC+GGG - chr2.4:59722750-59722769 MS.gene003283:intron 45.0%
CAAGAGTTGTTCTCAACGTC+TGG - chr2.4:59723115-59723134 MS.gene003283:intron 45.0%
CATGGAAGTGAAGCCTAACA+AGG + chr2.4:59722180-59722199 None:intergenic 45.0%
CGCAATATATGTCCCAATGG+TGG - chr2.4:59722989-59723008 MS.gene003283:CDS 45.0%
GTTGGATCAAAACTCGCAAG+GGG + chr2.4:59723025-59723044 None:intergenic 45.0%
TCCAGCTCCTTTCAACTCAT+TGG - chr2.4:59722686-59722705 MS.gene003283:CDS 45.0%
TCTAATCTCTCCTTGGTTCC+CGG + chr2.4:59723245-59723264 None:intergenic 45.0%
TGTCAATGTTGCCTCAACAG+AGG - chr2.4:59723309-59723328 MS.gene003283:CDS 45.0%
! AAAGCTGCATTTGCTGCTCA+AGG - chr2.4:59722717-59722736 MS.gene003283:CDS 45.0%
! TCCAATGAGTTGAAAGGAGC+TGG + chr2.4:59722690-59722709 None:intergenic 45.0%
!! GTATGCTTGCTAGCCTTGTT+AGG - chr2.4:59722164-59722183 MS.gene003283:CDS 45.0%
AACCATACCCTCCTCTGTTG+AGG + chr2.4:59723323-59723342 None:intergenic 50.0%
CAATGTTGCCTCAACAGAGG+AGG - chr2.4:59723312-59723331 MS.gene003283:CDS 50.0%
!! ATATGTCCCAATGGTGGACC+TGG - chr2.4:59722995-59723014 MS.gene003283:CDS 50.0%
AAACTCGCAAGGGGAGTTCC+AGG + chr2.4:59723016-59723035 None:intergenic 55.0%
GGAGTTCCAGGTCCACCATT+GGG + chr2.4:59723004-59723023 None:intergenic 55.0%
GGTGTGTTAACCGGGAACCA+AGG - chr2.4:59723232-59723251 MS.gene003283:CDS 55.0%
TGCCTCAACAGAGGAGGGTA+TGG - chr2.4:59723318-59723337 MS.gene003283:CDS 55.0%
GGGAGTTCCAGGTCCACCAT+TGG + chr2.4:59723005-59723024 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 59721992 59723354 59721992 ID=MS.gene003283
chr2.4 mRNA 59721992 59723354 59721992 ID=MS.gene003283.t1;Parent=MS.gene003283
chr2.4 exon 59723133 59723354 59723133 ID=MS.gene003283.t1.exon1;Parent=MS.gene003283.t1
chr2.4 CDS 59723133 59723354 59723133 ID=cds.MS.gene003283.t1;Parent=MS.gene003283.t1
chr2.4 exon 59722850 59723041 59722850 ID=MS.gene003283.t1.exon2;Parent=MS.gene003283.t1
chr2.4 CDS 59722850 59723041 59722850 ID=cds.MS.gene003283.t1;Parent=MS.gene003283.t1
chr2.4 exon 59722575 59722740 59722575 ID=MS.gene003283.t1.exon3;Parent=MS.gene003283.t1
chr2.4 CDS 59722575 59722740 59722575 ID=cds.MS.gene003283.t1;Parent=MS.gene003283.t1
chr2.4 exon 59721992 59722470 59721992 ID=MS.gene003283.t1.exon4;Parent=MS.gene003283.t1
chr2.4 CDS 59721992 59722470 59721992 ID=cds.MS.gene003283.t1;Parent=MS.gene003283.t1
Gene Sequence

>MS.gene003283

ATGAACTCTCTTCGTGCTGTAGCAATAGTTTTGTGCTGTATTGTAGTTGTGTTTGGAGTGTTACCTTACTCTTCAAATGCACAACTTAATCCATCGTTTTATAGCAAAACTTGTCCAAATGTTAGTTCCATTGTCCGTGAAGTCATAAGAACCGTTTCTAAGACAGATACTCGTATGCTTGCTAGCCTTGTTAGGCTTCACTTCCATGACTGTTTTGTTCAAGTATGTATACTTTACCTTCTACTTGTAAATGACTTGCATTATGCTATTGTTATAATCATAATGTAAATTATGTGATCTATGATTGGAACAGGGTTGTGATGCATCAGTTTTGTTGAATAACACTGCTACTATTGTGAGTGAACAAGATGCTTTTCCAACCAGAAACTCTTTAAGAGGTTTGGATGTTGTGAATCAAATCAAAACAGCTGTTGAAAAGGCTTGTCCTAACACAGTTTCTTGTGCTGATATTCTTGCTCTTTCTGCTGAATTATCATCTACACTGGTATATACTCCTCTTCCTATAGTATATAGTATCTTCATTCACCATATTGAATTTTAAATGTAGTTTCTGATTTATCGTTATGTTTTTGTTCTGTGATGAAATCAAACAGTCTCAAGGTCCTGATTGGAAAGTTCCATTAGGAAGAAGAGATGGTTTAACAGCAAACCAATCACTTGCTAACCAAAATCTTCCAGCTCCTTTCAACTCATTGGATCAACTCAAAGCTGCATTTGCTGCTCAAGGCCTCAGTACTACTGATCTAGTTGCACTCTCGGGTATGTAACATTTTAAAGTTTTTGTTTAAAAATTTCTAATTGGTCGTTACAATGATGACGCGAATGTTACAATAATAATTGATCTATATATGTTTCCATTGCAGGTGCTCATACATTTGGAAGAGCTCATTGCTCTTTATTTGTTAGTCGATTGTACAACTTCAGCAATACGGGAAGTCCCGATCCAACTCTTAACACAACTTACTTACAACAATTGCGCAATATATGTCCCAATGGTGGACCTGGAACTCCCCTTGCGAGTTTTGATCCAACTACTCCTGATAAATTTGACAAGAACTATTACTCTAATCTTCAAGTGAAAAAAGGTTTGCTTCAAAGTGATCAAGAGTTGTTCTCAACGTCTGGTGCAGATACCATTAGTATTGTCAACAATTTTGCAACTGATCAAAAAGCTTTTTTTGAGAGCTTTAAGGCTGCTATGATTAAAATGGGAAATATTGGTGTGTTAACCGGGAACCAAGGAGAGATTAGAAAACAATGCAACTTTGTTAACTCAAAATCAGTAGAACTAGGTCTTGTCAATGTTGCCTCAACAGAGGAGGGTATGGTTAGCTCAATGTAA
Protein sequence

>MS.gene003283.t1

MNSLRAVAIVLCCIVVVFGVLPYSSNAQLNPSFYSKTCPNVSSIVREVIRTVSKTDTRMLASLVRLHFHDCFVQGCDASVLLNNTATIVSEQDAFPTRNSLRGLDVVNQIKTAVEKACPNTVSCADILALSAELSSTLSQGPDWKVPLGRRDGLTANQSLANQNLPAPFNSLDQLKAAFAAQGLSTTDLVALSGAHTFGRAHCSLFVSRLYNFSNTGSPDPTLNTTYLQQLRNICPNGGPGTPLASFDPTTPDKFDKNYYSNLQVKKGLLQSDQELFSTSGADTISIVNNFATDQKAFFESFKAAMIKMGNIGVLTGNQGEIRKQCNFVNSKSVELGLVNVASTEEGMVSSM