Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02591.t1 | XP_003602039.1 | 98.9 | 355 | 4 | 0 | 1 | 355 | 1 | 355 | 2.40E-194 | 688 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02591.t1 | Q6YZ54 | 81.0 | 352 | 63 | 1 | 7 | 354 | 9 | 360 | 3.6e-159 | 562.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02591.t1 | G7J4X7 | 98.9 | 355 | 4 | 0 | 1 | 355 | 1 | 355 | 1.7e-194 | 688.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02591.t1 | MTR_3g088120 | 98.873 | 355 | 4 | 0 | 1 | 355 | 1 | 355 | 0.0 | 728 |
| MS.gene02591.t1 | MTR_3g088120 | 99.333 | 300 | 2 | 0 | 1 | 300 | 1 | 300 | 0.0 | 620 |
| MS.gene02591.t1 | MTR_4g102860 | 37.346 | 324 | 192 | 4 | 34 | 353 | 17 | 333 | 3.93e-67 | 215 |
| MS.gene02591.t1 | MTR_3g088380 | 47.368 | 209 | 104 | 2 | 34 | 236 | 11 | 219 | 1.42e-63 | 206 |
| MS.gene02591.t1 | MTR_6g471010 | 24.370 | 357 | 227 | 6 | 33 | 353 | 2 | 351 | 3.05e-32 | 124 |
| MS.gene02591.t1 | MTR_6g027590 | 24.496 | 347 | 219 | 6 | 33 | 343 | 2 | 341 | 3.28e-32 | 124 |
| MS.gene02591.t1 | MTR_5g020810 | 21.574 | 343 | 225 | 9 | 33 | 343 | 413 | 743 | 1.23e-15 | 78.6 |
| MS.gene02591.t1 | MTR_3g118160 | 21.493 | 335 | 217 | 12 | 2 | 304 | 394 | 714 | 1.66e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene02591.t1 | AT1G77470 | 77.027 | 370 | 67 | 4 | 1 | 354 | 1 | 368 | 0.0 | 577 |
| MS.gene02591.t1 | AT1G63160 | 38.365 | 318 | 185 | 4 | 34 | 347 | 17 | 327 | 2.74e-67 | 215 |
| MS.gene02591.t1 | AT1G21690 | 38.671 | 331 | 183 | 6 | 34 | 350 | 11 | 335 | 5.04e-66 | 212 |
| MS.gene02591.t1 | AT1G21690 | 48.402 | 219 | 106 | 3 | 34 | 245 | 11 | 229 | 8.11e-66 | 212 |
| MS.gene02591.t1 | AT1G21690 | 38.485 | 330 | 178 | 6 | 34 | 350 | 11 | 328 | 2.22e-64 | 207 |
| MS.gene02591.t1 | AT1G21690 | 38.369 | 331 | 172 | 7 | 34 | 350 | 11 | 323 | 4.60e-64 | 207 |
| MS.gene02591.t1 | AT5G27740 | 26.705 | 352 | 205 | 8 | 33 | 343 | 2 | 341 | 7.84e-36 | 134 |
| MS.gene02591.t1 | AT1G14460 | 23.404 | 235 | 156 | 4 | 36 | 249 | 426 | 657 | 1.83e-11 | 66.2 |
| MS.gene02591.t1 | AT5G45720 | 22.026 | 227 | 159 | 5 | 34 | 245 | 345 | 568 | 3.83e-11 | 65.1 |
| MS.gene02591.t1 | AT5G45720 | 22.026 | 227 | 159 | 5 | 34 | 245 | 345 | 568 | 3.84e-11 | 65.1 |
| MS.gene02591.t1 | AT1G24290 | 31.739 | 230 | 129 | 11 | 36 | 249 | 105 | 322 | 4.58e-11 | 64.3 |
| MS.gene02591.t1 | AT2G02480 | 22.609 | 230 | 155 | 3 | 36 | 245 | 453 | 679 | 8.37e-11 | 63.9 |
| MS.gene02591.t1 | AT2G02480 | 22.609 | 230 | 155 | 3 | 36 | 245 | 453 | 679 | 8.37e-11 | 63.9 |
Find 76 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCTCTACGTAACGCAAAT+TGG | 0.189548 | 3.1:-71015250 | None:intergenic |
| AGATATTTGCTCAATGTCTT+TGG | 0.248728 | 3.1:-71019074 | None:intergenic |
| TCAGTATCATAATATGATTT+TGG | 0.311016 | 3.1:+71014102 | MS.gene02591:CDS |
| ACATTGAGCAAATATCTTAC+TGG | 0.344071 | 3.1:+71019080 | MS.gene02591:CDS |
| TGCAGGTACAGATTAAGTTT+TGG | 0.348480 | 3.1:+71020766 | MS.gene02591:intron |
| CGTCAAACCCTCTGTAAAAC+TGG | 0.370275 | 3.1:+71015190 | MS.gene02591:CDS |
| AATCAAGATGCACCCGGTTT+CGG | 0.378472 | 3.1:+71015439 | MS.gene02591:CDS |
| GATATTTGCTCAATGTCTTT+GGG | 0.389281 | 3.1:-71019073 | None:intergenic |
| GTGCATCTTGATTGCAGTGC+TGG | 0.392350 | 3.1:-71015429 | None:intergenic |
| CTGCTGTTGTATGGTCCTCC+TGG | 0.395722 | 3.1:+71014028 | MS.gene02591:CDS |
| CAAGAGGGGCAAACCGAAAC+CGG | 0.396956 | 3.1:-71015452 | None:intergenic |
| AGCACTCAGAGTCTATCATT+TGG | 0.402934 | 3.1:+71014187 | MS.gene02591:CDS |
| GCCACCGAAGGAAGGGTTAC+CGG | 0.403122 | 3.1:-71013794 | None:intergenic |
| ACCTCTACGTAACGCAAATT+GGG | 0.410660 | 3.1:-71015249 | None:intergenic |
| TGCTCAATGTCTTTGGGCAG+TGG | 0.410840 | 3.1:-71019067 | None:intergenic |
| GCACTCAGAGTCTATCATTT+GGG | 0.412330 | 3.1:+71014188 | MS.gene02591:CDS |
| AAAGGCACTGAATATTCTTC+AGG | 0.412974 | 3.1:+71017896 | MS.gene02591:CDS |
| AGTGCAGTTGGTGAATGATT+TGG | 0.434023 | 3.1:+71019401 | MS.gene02591:CDS |
| GTGGCTTATCTGCTCTTGTT+CGG | 0.434803 | 3.1:+71017853 | MS.gene02591:CDS |
| ACCAACTGCACTCGAACGGC+TGG | 0.444902 | 3.1:-71019390 | None:intergenic |
| TTGTATGGTCCTCCTGGAAC+GGG | 0.453099 | 3.1:+71014034 | MS.gene02591:CDS |
| GCCGCCGGTAACCCTTCCTT+CGG | 0.453827 | 3.1:+71013790 | MS.gene02591:CDS |
| TTACCCCATCTGCTGTTGTA+TGG | 0.471783 | 3.1:+71014019 | MS.gene02591:CDS |
| TCGGTGGCAAAGCTTCGCTA+TGG | 0.473250 | 3.1:+71013809 | MS.gene02591:CDS |
| ATTTCCAGTGCAAAGATAAA+CGG | 0.476730 | 3.1:-71019044 | None:intergenic |
| CGGTGGCAAAGCTTCGCTAT+GGG | 0.498078 | 3.1:+71013810 | MS.gene02591:CDS |
| GAAGCCGTTTATCTTTGCAC+TGG | 0.505763 | 3.1:+71019040 | MS.gene02591:CDS |
| GCAACATCGTCGAGGGATTG+AGG | 0.509495 | 3.1:-71013847 | None:intergenic |
| GGCGGAGGAGACTTATCCTA+TGG | 0.511189 | 3.1:+71013732 | MS.gene02591:CDS |
| GTTGTATGGTCCTCCTGGAA+CGG | 0.512128 | 3.1:+71014033 | MS.gene02591:CDS |
| GCGGTGGCGCGAAAATTATA+CGG | 0.514722 | 3.1:+71014076 | MS.gene02591:CDS |
| CTGAATGCTTCAGATGATAG+AGG | 0.516669 | 3.1:+71014127 | MS.gene02591:CDS |
| TGAAGCAGATGCCATGACTA+AGG | 0.516889 | 3.1:+71015223 | MS.gene02591:CDS |
| GAAGCTTTGCCACCGAAGGA+AGG | 0.543002 | 3.1:-71013802 | None:intergenic |
| TGCATCTTGATTGCAGTGCT+GGG | 0.544244 | 3.1:-71015428 | None:intergenic |
| GCCGGTAACCCTTCCTTCGG+TGG | 0.549196 | 3.1:+71013793 | MS.gene02591:CDS |
| GGCAAAACCGTCATTGCCGC+CGG | 0.553759 | 3.1:+71013775 | MS.gene02591:CDS |
| GCTCTTGTTCGGCTTAGCAA+TGG | 0.554174 | 3.1:+71017864 | MS.gene02591:CDS |
| GCCAGCCGTTCGAGTGCAGT+TGG | 0.554697 | 3.1:+71019389 | MS.gene02591:CDS |
| TGCAACGATAAGCTTCAGCT+TGG | 0.555547 | 3.1:+71020790 | MS.gene02591:CDS |
| AGGGTTACCGGCGGCAATGA+CGG | 0.559162 | 3.1:-71013782 | None:intergenic |
| GAGGACCATACAACAGCAGA+TGG | 0.563295 | 3.1:-71014024 | None:intergenic |
| GGGTTTAATAACCATGGCGG+AGG | 0.566041 | 3.1:+71013717 | None:intergenic |
| TAGCAATGGTGATATGAGAA+AGG | 0.575803 | 3.1:+71017878 | MS.gene02591:CDS |
| TACACGTGCTAGATCTGCAA+TGG | 0.578841 | 3.1:+71020831 | MS.gene02591:CDS |
| TCTGTGAAGTCGATGTCCAT+AGG | 0.581778 | 3.1:-71013748 | None:intergenic |
| AAGCTTTGCCACCGAAGGAA+GGG | 0.581985 | 3.1:-71013801 | None:intergenic |
| AAGAGGGGCAAACCGAAACC+GGG | 0.584016 | 3.1:-71015451 | None:intergenic |
| TATGATATGAAAACAAGGAA+AGG | 0.587538 | 3.1:+71019224 | MS.gene02591:CDS |
| TATGAAAACAAGGAAAGGAC+TGG | 0.592837 | 3.1:+71019229 | MS.gene02591:CDS |
| AACTGCACTCGAACGGCTGG+CGG | 0.597817 | 3.1:-71019387 | None:intergenic |
| GTGAGCTGCAACATCGTCGA+GGG | 0.599799 | 3.1:-71013854 | None:intergenic |
| CACTGCAATCAAGATGCACC+CGG | 0.601545 | 3.1:+71015433 | MS.gene02591:CDS |
| TAGCGAAGCTTTGCCACCGA+AGG | 0.602957 | 3.1:-71013806 | None:intergenic |
| ATTCACCAACTGCACTCGAA+CGG | 0.603811 | 3.1:-71019394 | None:intergenic |
| TGACATGGACAGCATCAAGA+GGG | 0.608265 | 3.1:-71015467 | None:intergenic |
| AAATTGGGCATCCTTAGTCA+TGG | 0.619881 | 3.1:-71015234 | None:intergenic |
| GCCCAATTTGCGTTACGTAG+AGG | 0.621180 | 3.1:+71015248 | MS.gene02591:CDS |
| AACATGTTATCAATGCTGAA+AGG | 0.623395 | 3.1:+71015502 | MS.gene02591:CDS |
| AGGATAAGTCTCCTCCGCCA+TGG | 0.624657 | 3.1:-71013728 | None:intergenic |
| AGGACCATACAACAGCAGAT+GGG | 0.625782 | 3.1:-71014023 | None:intergenic |
| TACTTGTGTCGACGATGTCG+CGG | 0.626145 | 3.1:-71013876 | None:intergenic |
| GTTTCAGTCTCTCAGTGACA+TGG | 0.627168 | 3.1:-71015482 | None:intergenic |
| GGACCATACAACAGCAGATG+GGG | 0.630103 | 3.1:-71014022 | None:intergenic |
| GACATCGACTTCACAGACAA+GGG | 0.631926 | 3.1:+71013754 | MS.gene02591:CDS |
| GGACATCGACTTCACAGACA+AGG | 0.636430 | 3.1:+71013753 | MS.gene02591:CDS |
| GTGACATGGACAGCATCAAG+AGG | 0.637050 | 3.1:-71015468 | None:intergenic |
| AGAAATATACAAAGAGCACT+AGG | 0.637557 | 3.1:+71015370 | MS.gene02591:CDS |
| AGGCTTGATGTTCAAGACAG+TGG | 0.638532 | 3.1:+71017834 | MS.gene02591:intron |
| GAATATATGATATGAAAACA+AGG | 0.653141 | 3.1:+71019219 | MS.gene02591:CDS |
| AACATCGACGATTCTCGCGG+TGG | 0.654620 | 3.1:+71014060 | MS.gene02591:CDS |
| GGTGAGCTGCAACATCGTCG+AGG | 0.664996 | 3.1:-71013855 | None:intergenic |
| GACATGGACAGCATCAAGAG+GGG | 0.683891 | 3.1:-71015466 | None:intergenic |
| ACCGAAGGAAGGGTTACCGG+CGG | 0.687119 | 3.1:-71013791 | None:intergenic |
| TAAAACATCGACGATTCTCG+CGG | 0.694200 | 3.1:+71014057 | MS.gene02591:CDS |
| TTCTTCAGTAATCTGCTGAG+AGG | 0.704249 | 3.1:-71019020 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 71013730 | 71020870 | 71013730 | ID=MS.gene02591 |
| chr3.1 | mRNA | 71013730 | 71020870 | 71013730 | ID=MS.gene02591.t1;Parent=MS.gene02591 |
| chr3.1 | exon | 71013730 | 71013895 | 71013730 | ID=MS.gene02591.t1.exon1;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71013730 | 71013895 | 71013730 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71013993 | 71014209 | 71013993 | ID=MS.gene02591.t1.exon2;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71013993 | 71014209 | 71013993 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71015190 | 71015269 | 71015190 | ID=MS.gene02591.t1.exon3;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71015190 | 71015269 | 71015190 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71015364 | 71015523 | 71015364 | ID=MS.gene02591.t1.exon4;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71015364 | 71015523 | 71015364 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71017836 | 71017917 | 71017836 | ID=MS.gene02591.t1.exon5;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71017836 | 71017917 | 71017836 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71019007 | 71019136 | 71019007 | ID=MS.gene02591.t1.exon6;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71019007 | 71019136 | 71019007 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71019219 | 71019282 | 71019219 | ID=MS.gene02591.t1.exon7;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71019219 | 71019282 | 71019219 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71019365 | 71019433 | 71019365 | ID=MS.gene02591.t1.exon8;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71019365 | 71019433 | 71019365 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| chr3.1 | exon | 71020771 | 71020870 | 71020771 | ID=MS.gene02591.t1.exon9;Parent=MS.gene02591.t1 |
| chr3.1 | CDS | 71020771 | 71020870 | 71020771 | ID=cds.MS.gene02591.t1;Parent=MS.gene02591.t1 |
| Gene Sequence |
| Protein sequence |