AlfalfaGEDB | MS.gene031693

M. sativa cultivar XinJiangDaYe / MS.gene031693

KEGG: -
GO: GO:0003674 GO:0003824 GO:0016491
PFAM: PF13561.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031693.t1	XP_003607490.2	98.6	285	4	0	1	285	1	285	3.70E-153	550.8

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031693.t1	Q9M1K9	59.9	267	104	3	17	281	6	271	4.0e-84	312.8

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031693.t1	G7JTV8	98.6	285	4	0	1	285	1	285	2.6e-153	550.8

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene007006	MS.gene031693	PPI
MS.gene031693	MS.gene23019	PPI
MS.gene031693	MS.gene03319	PPI
MS.gene031693	MS.gene25674	PPI
MS.gene031693	MS.gene87780	PPI
MS.gene031693	MS.gene014425	PPI
MS.gene031693	MS.gene80360	PPI
MS.gene031693	MS.gene42114	PPI
MS.gene031693	MS.gene028938	PPI
MS.gene031693	MS.gene25667	PPI

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031693.t1	MTR_4g078630	98.596	285	4	0	1	285	1	285	0.0	577
MS.gene031693.t1	MTR_7g071680	46.429	280	133	6	15	279	25	302	7.61e-77	236
MS.gene031693.t1	MTR_4g052340	47.955	269	126	4	17	282	12	269	9.16e-75	229
MS.gene031693.t1	MTR_4g052350	47.253	273	126	4	15	282	10	269	5.20e-72	223
MS.gene031693.t1	MTR_4g052300	47.148	263	121	4	18	275	7	256	1.04e-70	219
MS.gene031693.t1	MTR_7g107670	45.946	259	133	5	17	272	31	285	2.73e-70	219
MS.gene031693.t1	MTR_4g052320	46.360	261	127	3	18	275	7	257	3.68e-69	215
MS.gene031693.t1	MTR_7g083870	45.956	272	136	7	17	284	33	297	6.43e-68	213
MS.gene031693.t1	MTR_7g110130	45.149	268	135	4	14	277	1	260	1.62e-66	208
MS.gene031693.t1	MTR_3g020670	44.727	275	145	4	5	274	1	273	9.01e-64	202

Showing 1 to 10 of 64 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene031693.t1	AT3G42960	59.259	270	107	3	15	282	4	272	7.02e-107	311
MS.gene031693.t1	AT3G51680	46.886	273	134	3	14	275	27	299	1.02e-72	226
MS.gene031693.t1	AT3G26770	46.360	261	130	7	17	272	39	294	1.46e-67	213
MS.gene031693.t1	AT2G47140	46.332	259	128	4	14	269	1	251	5.51e-67	209
MS.gene031693.t1	AT3G26760	43.182	264	144	5	17	276	34	295	1.15e-63	202
MS.gene031693.t1	AT4G03140	43.346	263	142	5	17	276	76	334	2.18e-63	203
MS.gene031693.t1	AT2G47120	42.023	257	136	5	18	271	5	251	1.97e-58	187
MS.gene031693.t1	AT2G47120	42.023	257	136	5	18	271	6	252	2.05e-58	187
MS.gene031693.t1	AT3G29250	43.077	260	131	6	18	271	5	253	8.68e-58	186
MS.gene031693.t1	AT3G29250	41.948	267	138	6	11	271	34	289	1.91e-57	186

Showing 1 to 10 of 68 entries

Previous1 2 3 4 5 6 7Next

Find 44 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAACTGATGATGTTGCAC+AGG	0.603862	4.3:-30534605	MS.gene031693:CDS
AACAATTGAGTGAGTTTATT+GGG	0.333525	4.3:-30534660	MS.gene031693:CDS
AACCTTTCAATATCATGGAA+AGG	0.544623	4.3:-30535227	MS.gene031693:CDS
AAGCATAACAACACTTGACA+TGG	0.580277	4.3:-30534995	MS.gene031693:CDS
AAGGTAGCAGTTATAACAGG+CGG	0.690916	4.3:-30535416	MS.gene031693:CDS
AATCTCTTTGGAACAATCCA+TGG	0.489840	4.3:-30534946	MS.gene031693:CDS
ACAGGCGGTGCAAGAGGAAT+TGG	0.413923	4.3:-30535401	MS.gene031693:CDS
AGAAGTGCGGCGTGTGAATT+AGG	0.357629	4.3:-30534784	MS.gene031693:CDS
AGGGTTGCTGAATCAATTGA+TGG	0.484224	4.3:-30535302	MS.gene031693:CDS
AGTGCAGCTGCAACTATAGG+TGG	0.592641	4.3:-30534859	MS.gene031693:CDS

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACCTTTCAATATCATGGAA+AGG	-	chr4.3:30534817-30534836	MS.gene031693:CDS	30.0%
ATGATCAAAGGTAAAAAAGG+AGG	-	chr4.3:30535143-30535162	MS.gene031693:intron	30.0%
CAGTTAACCTTTCAATATCA+TGG	-	chr4.3:30534812-30534831	MS.gene031693:CDS	30.0%
GAACAATTGAGTGAGTTTAT+TGG	-	chr4.3:30535383-30535402	MS.gene031693:CDS	30.0%
GCAATGATCAAAGGTAAAAA+AGG	-	chr4.3:30535140-30535159	MS.gene031693:intron	30.0%
TACAATGTCAAAATCAGCTA+TGG	-	chr4.3:30535226-30535245	MS.gene031693:CDS	30.0%
TGATTCAATGTCAGATTCTT+TGG	+	chr4.3:30534791-30534810	None:intergenic	30.0%
TGTTGAACATTATGTCTAAG+TGG	+	chr4.3:30534843-30534862	None:intergenic	30.0%
AAGCATAACAACACTTGACA+TGG	-	chr4.3:30535049-30535068	MS.gene031693:intron	35.0%
ATGTCAAAATCAGCTATGGA+TGG	-	chr4.3:30535230-30535249	MS.gene031693:CDS	35.0%

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	30534486	30535580	30534486	ID=MS.gene031693
chr4.3	mRNA	30534486	30535580	30534486	ID=MS.gene031693.t1;Parent=MS.gene031693
chr4.3	exon	30535528	30535580	30535528	ID=MS.gene031693.t1.exon1;Parent=MS.gene031693.t1
chr4.3	CDS	30535528	30535580	30535528	ID=cds.MS.gene031693.t1;Parent=MS.gene031693.t1
chr4.3	exon	30535189	30535448	30535189	ID=MS.gene031693.t1.exon2;Parent=MS.gene031693.t1
chr4.3	CDS	30535189	30535448	30535189	ID=cds.MS.gene031693.t1;Parent=MS.gene031693.t1
chr4.3	exon	30534486	30535030	30534486	ID=MS.gene031693.t1.exon3;Parent=MS.gene031693.t1
chr4.3	CDS	30534486	30535030	30534486	ID=cds.MS.gene031693.t1;Parent=MS.gene031693.t1

Gene Sequence

>MS.gene031693

ATGGAGCCACGTATGATTCAGAATGTAGAATCTCAAAATTTAGCTCCAAAAAGGTTAGTAATCTCGTTGATATATAGTCTCATTTACCTATCATATGATATTAAATTTCTTTTCTTTTGAAATGTTTTTAAGGCTACTAGGTAAGGTAGCAGTTATAACAGGCGGTGCAAGAGGAATTGGTGCTGCAACAGCAAAATTATTTGCAGAAAATGGAGCACATGTCATCATTGCTGATGTTCTAGATGAAGAAGGCACCAGGGTTGCTGAATCAATTGATGGTCTCTACATACACTGTGATGTATCCAAAGAATCTGACATTGAATCAGCAGTTAACCTTTCAATATCATGGAAAGGCCACTTAGACATAATGTTCAACAATGCAGGAATTGCAGGTGGGTGCAATGGAATGGTTTATTTTGAATTTTCGAAGAAAAAAGTGAATTAGTTTTTTTTTTTTGACAAAAAAAAAAAAAAAGTGAGTTAAAATAGTTTTGTTTGGATATTTAGGCTCATCGGATCATTGGTTTGGTTTTAACGCCCGTAATTGCAGGCTATGAAGGAAGAAGCATAACAACACTTGACATGGAAAAACTGACTCATTTACTTTCAATCAATCTCTTTGGAACAATCCATGGAATCAAACATGCTGCAAAAGCAATGATCAAAGGTAAAAAAGGAGGATCAATTATTTGTACATCAAGTGCAGCTGCAACTATAGGTGGATTCGCTTCACATGGTTATACAATGTCAAAATCAGCTATGGATGGATTAATGAGAAGTGCGGCGTGTGAATTAGGCGTTCATTTGATTCGTGTTAATTGTGTTTCTCCGCACGGCGTTCCTTCTGAGATGCTTTTGAATGCTTTTAAATGTTACGGTGAAGTTGATATGACTAGTGAACAATTGAGTGAGTTTATTGGGATGAATGCAAGTTTGCTTAAAGGGAGAGGTGCAACAACTGATGATGTTGCACAGGCTGCTCTGTTTTTGGCTAGTGATGAATCTGGATTTGTCACTGCTCATAATCTTTCAGTTGATGGTGGAATCACATCTGCTAATAGTGTTATGAGTTTCATCTACCAAGATCCTAAGTGA

Protein sequence

>MS.gene031693.t1

MEPRMIQNVESQNLAPKRLLGKVAVITGGARGIGAATAKLFAENGAHVIIADVLDEEGTRVAESIDGLYIHCDVSKESDIESAVNLSISWKGHLDIMFNNAGIAGYEGRSITTLDMEKLTHLLSINLFGTIHGIKHAAKAMIKGKKGGSIICTSSAAATIGGFASHGYTMSKSAMDGLMRSAACELGVHLIRVNCVSPHGVPSEMLLNAFKCYGEVDMTSEQLSEFIGMNASLLKGRGATTDDVAQAALFLASDESGFVTAHNLSVDGGITSANSVMSFIYQDPK