AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene031693

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031693.t1 MTR_4g078630 98.596 285 4 0 1 285 1 285 0.0 577
MS.gene031693.t1 MTR_7g071680 46.429 280 133 6 15 279 25 302 7.61e-77 236
MS.gene031693.t1 MTR_4g052340 47.955 269 126 4 17 282 12 269 9.16e-75 229
MS.gene031693.t1 MTR_4g052350 47.253 273 126 4 15 282 10 269 5.20e-72 223
MS.gene031693.t1 MTR_4g052300 47.148 263 121 4 18 275 7 256 1.04e-70 219
MS.gene031693.t1 MTR_7g107670 45.946 259 133 5 17 272 31 285 2.73e-70 219
MS.gene031693.t1 MTR_4g052320 46.360 261 127 3 18 275 7 257 3.68e-69 215
MS.gene031693.t1 MTR_7g083870 45.956 272 136 7 17 284 33 297 6.43e-68 213
MS.gene031693.t1 MTR_7g110130 45.149 268 135 4 14 277 1 260 1.62e-66 208
MS.gene031693.t1 MTR_3g020670 44.727 275 145 4 5 274 1 273 9.01e-64 202
MS.gene031693.t1 MTR_6g023590 44.358 257 132 4 18 270 12 261 2.00e-63 201
MS.gene031693.t1 MTR_7g110160 46.617 266 109 5 14 274 1 238 7.78e-63 198
MS.gene031693.t1 MTR_2g090165 42.336 274 145 5 14 283 1 265 8.51e-63 199
MS.gene031693.t1 MTR_6g023990 44.318 264 136 4 11 270 6 262 1.95e-62 198
MS.gene031693.t1 MTR_6g023610 44.706 255 130 4 18 268 12 259 3.48e-62 197
MS.gene031693.t1 MTR_7g105460 45.387 271 134 5 18 283 12 273 7.01e-62 197
MS.gene031693.t1 MTR_7g110140 45.914 257 128 4 18 271 5 253 1.90e-61 195
MS.gene031693.t1 MTR_6g023910 42.105 266 143 3 18 279 12 270 1.96e-60 193
MS.gene031693.t1 MTR_6g023600 44.141 256 132 4 18 269 12 260 1.10e-59 191
MS.gene031693.t1 MTR_6g023950 45.703 256 128 5 18 269 12 260 3.24e-59 190
MS.gene031693.t1 MTR_7g105580 40.996 261 125 6 17 274 6 240 9.06e-57 183
MS.gene031693.t1 MTR_6g023600 43.750 256 127 5 18 269 12 254 1.75e-56 182
MS.gene031693.t1 MTR_7g105590 48.168 191 95 2 17 204 6 195 1.65e-54 175
MS.gene031693.t1 MTR_6g035395 41.538 260 134 5 17 276 3 244 2.75e-53 174
MS.gene031693.t1 MTR_3g113870 42.211 199 109 4 32 227 34 229 1.05e-46 157
MS.gene031693.t1 MTR_7g105570 44.059 202 102 4 84 283 38 230 7.16e-38 134
MS.gene031693.t1 MTR_4g084800 49.242 132 64 1 17 145 11 142 1.38e-35 125
MS.gene031693.t1 MTR_1g082760 30.566 265 156 6 18 269 39 288 4.56e-25 101
MS.gene031693.t1 MTR_7g113650 29.811 265 158 7 18 269 39 288 9.17e-24 98.2
MS.gene031693.t1 MTR_4g132850 31.439 264 157 8 16 272 4 250 1.62e-23 96.7
MS.gene031693.t1 MTR_3g085740 29.630 270 164 9 10 270 66 318 1.80e-20 89.7
MS.gene031693.t1 MTR_7g094510 30.000 260 161 6 19 269 6 253 3.96e-20 87.4
MS.gene031693.t1 MTR_3g068155 28.571 259 166 8 19 271 19 264 5.67e-20 87.4
MS.gene031693.t1 MTR_4g131740 27.113 284 177 8 1 270 23 290 6.20e-20 87.8
MS.gene031693.t1 MTR_3g068070 28.788 264 159 9 19 271 15 260 1.08e-19 86.7
MS.gene031693.t1 MTR_3g068065 29.615 260 164 9 19 272 17 263 7.46e-19 84.3
MS.gene031693.t1 MTR_3g068085 30.566 265 153 12 19 271 15 260 2.08e-18 83.2
MS.gene031693.t1 MTR_1196s0010 30.400 250 158 5 22 269 277 512 2.20e-18 85.1
MS.gene031693.t1 MTR_1g051165 27.915 283 168 7 10 271 4 271 4.68e-18 82.4
MS.gene031693.t1 MTR_7g094520 28.626 262 164 7 19 270 11 259 2.34e-17 80.1
MS.gene031693.t1 MTR_4g058840 29.658 263 165 6 19 271 11 263 6.29e-17 79.0
MS.gene031693.t1 MTR_4g058820 29.658 263 165 6 19 271 11 263 6.29e-17 79.0
MS.gene031693.t1 MTR_7g063360 28.626 262 166 7 19 271 16 265 7.70e-17 78.6
MS.gene031693.t1 MTR_4g064887 27.675 271 153 11 19 271 15 260 5.90e-16 76.3
MS.gene031693.t1 MTR_4g058810 28.897 263 167 6 19 271 11 263 1.02e-15 75.9
MS.gene031693.t1 MTR_8g442750 29.371 286 161 11 5 270 1 265 7.43e-14 70.9
MS.gene031693.t1 MTR_7g063390 27.376 263 168 7 19 271 16 265 1.02e-13 70.1
MS.gene031693.t1 MTR_8g096580 29.592 196 129 3 22 211 48 240 1.03e-13 70.5
MS.gene031693.t1 MTR_7g063260 27.170 265 168 5 19 272 16 266 2.48e-13 68.9
MS.gene031693.t1 MTR_4g086400 28.922 204 127 4 21 208 6 207 8.72e-13 68.6
MS.gene031693.t1 MTR_3g068175 26.838 272 180 8 6 271 4 262 1.05e-12 67.0
MS.gene031693.t1 MTR_7g063320 25.954 262 171 6 19 270 15 263 1.40e-12 66.6
MS.gene031693.t1 MTR_8g096620 27.638 199 128 5 16 205 42 233 7.08e-12 65.5
MS.gene031693.t1 MTR_1g068955 27.985 268 169 7 12 268 7 261 9.39e-12 64.3
MS.gene031693.t1 MTR_8g044240 26.531 196 129 4 25 207 75 268 1.03e-11 64.7
MS.gene031693.t1 MTR_7g076660 31.056 161 94 7 22 166 8 167 3.36e-11 62.8
MS.gene031693.t1 MTR_7g063330 26.236 263 172 7 19 272 15 264 3.66e-11 62.4
MS.gene031693.t1 MTR_4g086410 28.000 200 128 3 21 205 6 204 4.77e-11 63.5
MS.gene031693.t1 MTR_3g068175 26.087 276 181 9 6 271 4 266 6.64e-11 62.0
MS.gene031693.t1 MTR_7g080410 29.302 215 121 9 22 212 41 248 6.65e-11 62.4
MS.gene031693.t1 MTR_7g076660 30.435 161 95 7 22 166 7 166 7.17e-11 62.0
MS.gene031693.t1 MTR_7g080410 29.245 212 125 8 22 212 41 248 7.26e-11 62.0
MS.gene031693.t1 MTR_7g076655 31.447 159 92 7 24 166 9 166 9.08e-11 61.6
MS.gene031693.t1 MTR_7g063270 26.415 265 169 7 19 272 16 265 9.58e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene031693.t1 AT3G42960 59.259 270 107 3 15 282 4 272 7.02e-107 311
MS.gene031693.t1 AT3G51680 46.886 273 134 3 14 275 27 299 1.02e-72 226
MS.gene031693.t1 AT3G26770 46.360 261 130 7 17 272 39 294 1.46e-67 213
MS.gene031693.t1 AT2G47140 46.332 259 128 4 14 269 1 251 5.51e-67 209
MS.gene031693.t1 AT3G26760 43.182 264 144 5 17 276 34 295 1.15e-63 202
MS.gene031693.t1 AT4G03140 43.346 263 142 5 17 276 76 334 2.18e-63 203
MS.gene031693.t1 AT2G47120 42.023 257 136 5 18 271 5 251 1.97e-58 187
MS.gene031693.t1 AT2G47120 42.023 257 136 5 18 271 6 252 2.05e-58 187
MS.gene031693.t1 AT3G29250 43.077 260 131 6 18 271 5 253 8.68e-58 186
MS.gene031693.t1 AT3G29250 41.948 267 138 6 11 271 34 289 1.91e-57 186
MS.gene031693.t1 AT3G29260 42.424 264 134 6 14 271 1 252 2.54e-57 185
MS.gene031693.t1 AT2G47130 40.856 257 140 3 18 271 5 252 1.55e-56 182
MS.gene031693.t1 AT3G29250 42.857 259 131 6 19 271 44 291 2.16e-56 184
MS.gene031693.t1 AT1G52340 41.887 265 145 3 17 274 16 278 1.33e-54 179
MS.gene031693.t1 AT2G47150 29.200 250 119 5 21 270 3 194 6.57e-24 96.7
MS.gene031693.t1 AT1G54870 28.679 265 161 6 18 269 83 332 1.75e-21 92.8
MS.gene031693.t1 AT1G54870 28.679 265 161 6 18 269 81 330 1.94e-21 92.8
MS.gene031693.t1 AT2G29310 27.500 280 160 8 19 282 7 259 2.95e-21 90.9
MS.gene031693.t1 AT3G03980 29.670 273 158 8 16 269 11 268 1.34e-20 89.4
MS.gene031693.t1 AT4G05530 31.203 266 155 9 16 272 6 252 1.81e-20 88.6
MS.gene031693.t1 AT5G18210 30.566 265 154 8 19 268 8 257 9.83e-20 86.7
MS.gene031693.t1 AT3G04000 28.309 272 164 7 16 269 11 269 1.26e-19 86.7
MS.gene031693.t1 AT3G05260 29.930 284 167 10 1 270 20 285 1.27e-19 87.0
MS.gene031693.t1 AT5G06060 28.571 259 166 7 19 271 9 254 1.49e-19 86.3
MS.gene031693.t1 AT5G18210 31.873 251 141 8 19 254 8 243 1.73e-19 86.3
MS.gene031693.t1 AT2G30670 26.792 265 163 7 19 271 7 252 1.13e-18 84.0
MS.gene031693.t1 AT1G24360 28.938 273 162 9 5 270 70 317 4.13e-18 83.2
MS.gene031693.t1 AT2G29330 27.536 276 165 8 19 282 7 259 4.33e-18 82.0
MS.gene031693.t1 AT2G29320 27.076 277 166 8 19 282 13 266 6.96e-17 79.0
MS.gene031693.t1 AT2G29290 27.899 276 164 9 19 282 7 259 9.68e-17 78.6
MS.gene031693.t1 AT2G29360 26.165 279 176 10 5 271 1 261 9.83e-17 78.6
MS.gene031693.t1 AT2G29340 26.429 280 163 8 19 282 7 259 1.64e-16 77.8
MS.gene031693.t1 AT1G07450 27.481 262 164 9 19 271 8 252 1.82e-16 77.8
MS.gene031693.t1 AT2G29260 28.195 266 158 8 19 271 68 313 1.85e-16 78.6
MS.gene031693.t1 AT2G29350 26.616 263 161 8 21 271 17 259 1.93e-16 77.8
MS.gene031693.t1 AT2G29150 28.782 271 161 9 11 269 8 258 2.49e-16 77.4
MS.gene031693.t1 AT2G29340 26.429 280 163 8 19 282 7 259 2.85e-16 77.8
MS.gene031693.t1 AT1G63380 27.305 282 180 8 1 271 1 268 3.47e-16 77.0
MS.gene031693.t1 AT1G62610 27.798 277 179 6 6 271 1 267 4.00e-16 77.0
MS.gene031693.t1 AT1G63380 28.261 276 177 7 7 271 5 270 4.21e-16 77.0
MS.gene031693.t1 AT1G63380 28.309 272 173 8 12 271 14 275 4.69e-16 77.0
MS.gene031693.t1 AT1G63380 28.309 272 173 8 12 271 11 272 4.71e-16 77.0
MS.gene031693.t1 AT1G62610 26.950 282 181 7 1 271 1 268 5.89e-16 76.6
MS.gene031693.t1 AT2G29310 26.609 233 139 7 55 282 52 257 7.00e-16 75.9
MS.gene031693.t1 AT2G29300 25.468 267 165 8 19 271 7 253 7.01e-16 75.9
MS.gene031693.t1 AT1G62610 27.941 272 174 7 12 271 5 266 7.50e-16 76.3
MS.gene031693.t1 AT1G62610 27.941 272 174 7 12 271 11 272 8.55e-16 76.3
MS.gene031693.t1 AT2G29310 29.648 199 119 5 19 205 7 196 8.90e-16 74.7
MS.gene031693.t1 AT2G29300 25.468 267 165 8 19 271 7 253 1.03e-15 75.9
MS.gene031693.t1 AT3G55290 29.924 264 163 8 19 271 17 269 1.14e-15 75.9
MS.gene031693.t1 AT3G55290 29.167 264 165 7 19 271 18 270 1.15e-15 75.9
MS.gene031693.t1 AT2G29370 27.076 277 176 10 5 271 1 261 1.21e-15 75.5
MS.gene031693.t1 AT3G55310 29.323 266 162 8 19 271 17 269 1.42e-15 75.5
MS.gene031693.t1 AT1G07440 27.338 278 162 10 19 282 12 263 1.51e-15 75.1
MS.gene031693.t1 AT4G13180 28.159 277 172 9 5 270 1 261 3.40e-15 73.9
MS.gene031693.t1 AT1G49670 27.542 236 134 5 21 227 6 233 2.73e-14 73.2
MS.gene031693.t1 AT1G49670 28.502 207 118 4 21 205 6 204 2.75e-14 73.2
MS.gene031693.t1 AT5G50770 31.553 206 124 6 7 205 38 233 6.87e-14 71.2
MS.gene031693.t1 AT2G29350 28.934 197 119 6 21 205 17 204 8.62e-14 69.7
MS.gene031693.t1 AT2G29290 27.511 229 142 7 55 282 37 242 1.06e-13 69.7
MS.gene031693.t1 AT2G29350 25.871 201 134 5 72 271 35 221 7.85e-13 67.0
MS.gene031693.t1 AT3G46170 26.568 271 178 7 12 271 18 278 1.87e-12 66.6
MS.gene031693.t1 AT2G17845 28.195 266 164 9 19 269 47 300 2.37e-12 66.6
MS.gene031693.t1 AT2G29320 26.761 213 137 6 72 282 53 248 5.88e-12 64.7
MS.gene031693.t1 AT3G47350 29.358 218 131 7 21 225 46 253 1.38e-11 64.3
MS.gene031693.t1 AT3G47350 29.358 218 131 7 21 225 46 253 1.58e-11 63.9
MS.gene031693.t1 AT2G29340 27.979 193 118 5 19 199 7 190 1.96e-11 62.4
MS.gene031693.t1 AT2G29340 27.979 193 118 5 19 199 7 190 1.96e-11 62.4

Find 44 sgRNAs with CRISPR-Local

Find 65 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAAATTATTTGCAGAAAA+TGG 0.160943 4.3:-30535368 MS.gene031693:CDS
TGATTCAATGTCAGATTCTT+TGG 0.249438 4.3:+30535256 None:intergenic
CTCAAAATTTAGCTCCAAAA+AGG 0.265907 4.3:-30535527 MS.gene031693:intron
TTACTTTCAATCAATCTCTT+TGG 0.274120 4.3:-30534958 MS.gene031693:CDS
ATGAATGCAAGTTTGCTTAA+AGG 0.275709 4.3:-30534637 MS.gene031693:CDS
GAACAATTGAGTGAGTTTAT+TGG 0.304179 4.3:-30534661 MS.gene031693:CDS
GCTCATAATCTTTCAGTTGA+TGG 0.319277 4.3:-30534541 MS.gene031693:CDS
AACAATTGAGTGAGTTTATT+GGG 0.333525 4.3:-30534660 MS.gene031693:CDS
TTTCTCTTCACTTAGGATCT+TGG 0.355190 4.3:+30534479 None:intergenic
AGAAGTGCGGCGTGTGAATT+AGG 0.357629 4.3:-30534784 MS.gene031693:CDS
TGAATGCAAGTTTGCTTAAA+GGG 0.367682 4.3:-30534636 MS.gene031693:CDS
TTCAACAATGCAGGAATTGC+AGG 0.375028 4.3:-30535188 MS.gene031693:intron
TTGCAGCATGTTTGATTCCA+TGG 0.396161 4.3:+30534929 None:intergenic
CAGTTAACCTTTCAATATCA+TGG 0.401447 4.3:-30535232 MS.gene031693:CDS
ACAGGCGGTGCAAGAGGAAT+TGG 0.413923 4.3:-30535401 MS.gene031693:CDS
GGTAAGGTAGCAGTTATAAC+AGG 0.437302 4.3:-30535419 MS.gene031693:CDS
TCAAGTGCAGCTGCAACTAT+AGG 0.447304 4.3:-30534862 MS.gene031693:CDS
CCCGTAATTGCAGGCTATGA+AGG 0.465657 4.3:-30535021 MS.gene031693:intron
AGGGTTGCTGAATCAATTGA+TGG 0.484224 4.3:-30535302 MS.gene031693:CDS
GACATAATGTTCAACAATGC+AGG 0.487244 4.3:-30535197 MS.gene031693:CDS
AATCTCTTTGGAACAATCCA+TGG 0.489840 4.3:-30534946 MS.gene031693:CDS
TACAATGTCAAAATCAGCTA+TGG 0.496795 4.3:-30534818 MS.gene031693:CDS
TGTTGAACATTATGTCTAAG+TGG 0.506022 4.3:+30535204 None:intergenic
GGCCTTTCCATGATATTGAA+AGG 0.513624 4.3:+30535225 None:intergenic
TTCTAGATGAAGAAGGCACC+AGG 0.520405 4.3:-30535322 MS.gene031693:CDS
AACCTTTCAATATCATGGAA+AGG 0.544623 4.3:-30535227 MS.gene031693:CDS
GCAAGTTTGCTTAAAGGGAG+AGG 0.554131 4.3:-30534631 MS.gene031693:CDS
GTTAATTGTGTTTCTCCGCA+CGG 0.557216 4.3:-30534745 MS.gene031693:CDS
CATAATCTTTCAGTTGATGG+TGG 0.564721 4.3:-30534538 MS.gene031693:CDS
ATGTCAAAATCAGCTATGGA+TGG 0.568969 4.3:-30534814 MS.gene031693:CDS
ATCAATTGATTCAGCAACCC+TGG 0.571405 4.3:+30535304 None:intergenic
AAGCATAACAACACTTGACA+TGG 0.580277 4.3:-30534995 MS.gene031693:CDS
GTTATAACAGGCGGTGCAAG+AGG 0.580952 4.3:-30535407 MS.gene031693:CDS
GCTGATGTTCTAGATGAAGA+AGG 0.589049 4.3:-30535329 MS.gene031693:CDS
AGTGCAGCTGCAACTATAGG+TGG 0.592641 4.3:-30534859 MS.gene031693:CDS
AACAACTGATGATGTTGCAC+AGG 0.603862 4.3:-30534605 MS.gene031693:CDS
GCATTCAAAAGCATCTCAGA+AGG 0.609801 4.3:+30534718 None:intergenic
ATAGGTGGATTCGCTTCACA+TGG 0.610255 4.3:-30534844 MS.gene031693:CDS
GCTGCAAAAGCAATGATCAA+AGG 0.629252 4.3:-30534913 MS.gene031693:CDS
ATCTCAGAAGGAACGCCGTG+CGG 0.661162 4.3:+30534730 None:intergenic
GGATGGATTAATGAGAAGTG+CGG 0.667924 4.3:-30534797 MS.gene031693:CDS
AAGGTAGCAGTTATAACAGG+CGG 0.690916 4.3:-30535416 MS.gene031693:CDS
TCTAGATGAAGAAGGCACCA+GGG 0.716790 4.3:-30535321 MS.gene031693:CDS
TCTACATTCTGAATCATACG+TGG 0.728605 4.3:+30535552 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTTAATATCATATGAT+AGG + chr4.3:30534575-30534594 None:intergenic 15.0%
!!! TTTCTTTTGAAATGTTTTTA+AGG - chr4.3:30534596-30534615 MS.gene031693:CDS 15.0%
!!! ATAGTTTTGTTTGGATATTT+AGG - chr4.3:30534971-30534990 MS.gene031693:CDS 20.0%
!!! TGAGTTAAAATAGTTTTGTT+TGG - chr4.3:30534962-30534981 MS.gene031693:CDS 20.0%
!!! TTGAATGCTTTTAAATGTTA+CGG - chr4.3:30535341-30535360 MS.gene031693:CDS 20.0%
! AACAATTGAGTGAGTTTATT+GGG - chr4.3:30535384-30535403 MS.gene031693:CDS 25.0%
! GCAAAATTATTTGCAGAAAA+TGG - chr4.3:30534676-30534695 MS.gene031693:CDS 25.0%
! TTACTTTCAATCAATCTCTT+TGG - chr4.3:30535086-30535105 MS.gene031693:intron 25.0%
AACCTTTCAATATCATGGAA+AGG - chr4.3:30534817-30534836 MS.gene031693:CDS 30.0%
ATGATCAAAGGTAAAAAAGG+AGG - chr4.3:30535143-30535162 MS.gene031693:intron 30.0%
CAGTTAACCTTTCAATATCA+TGG - chr4.3:30534812-30534831 MS.gene031693:CDS 30.0%
GAACAATTGAGTGAGTTTAT+TGG - chr4.3:30535383-30535402 MS.gene031693:CDS 30.0%
GCAATGATCAAAGGTAAAAA+AGG - chr4.3:30535140-30535159 MS.gene031693:intron 30.0%
TACAATGTCAAAATCAGCTA+TGG - chr4.3:30535226-30535245 MS.gene031693:CDS 30.0%
TGATTCAATGTCAGATTCTT+TGG + chr4.3:30534791-30534810 None:intergenic 30.0%
TGTTGAACATTATGTCTAAG+TGG + chr4.3:30534843-30534862 None:intergenic 30.0%
! AACGAGATTACTAACCTTTT+TGG + chr4.3:30534534-30534553 None:intergenic 30.0%
! ATGAATGCAAGTTTGCTTAA+AGG - chr4.3:30535407-30535426 MS.gene031693:CDS 30.0%
! CTCAAAATTTAGCTCCAAAA+AGG - chr4.3:30534517-30534536 MS.gene031693:CDS 30.0%
! TGAATGCAAGTTTGCTTAAA+GGG - chr4.3:30535408-30535427 MS.gene031693:CDS 30.0%
!!! GAAATGTTTTTAAGGCTACT+AGG - chr4.3:30534604-30534623 MS.gene031693:CDS 30.0%
AAGCATAACAACACTTGACA+TGG - chr4.3:30535049-30535068 MS.gene031693:intron 35.0%
ATGTCAAAATCAGCTATGGA+TGG - chr4.3:30535230-30535249 MS.gene031693:CDS 35.0%
GACATAATGTTCAACAATGC+AGG - chr4.3:30534847-30534866 MS.gene031693:CDS 35.0%
GCTCATAATCTTTCAGTTGA+TGG - chr4.3:30535503-30535522 MS.gene031693:intron 35.0%
GTTTGGATATTTAGGCTCAT+CGG - chr4.3:30534979-30534998 MS.gene031693:CDS 35.0%
TCTACATTCTGAATCATACG+TGG + chr4.3:30534495-30534514 None:intergenic 35.0%
!! AATCTCTTTGGAACAATCCA+TGG - chr4.3:30535098-30535117 MS.gene031693:intron 35.0%
!! CATAATCTTTCAGTTGATGG+TGG - chr4.3:30535506-30535525 MS.gene031693:intron 35.0%
!!! GTTTTTAAGGCTACTAGGTA+AGG - chr4.3:30534609-30534628 MS.gene031693:CDS 35.0%
!!! TTTTTGGCTAGTGATGAATC+TGG - chr4.3:30535470-30535489 MS.gene031693:intron 35.0%
AAGGTAGCAGTTATAACAGG+CGG - chr4.3:30534628-30534647 MS.gene031693:CDS 40.0%
AGGGTTGCTGAATCAATTGA+TGG - chr4.3:30534742-30534761 MS.gene031693:CDS 40.0%
ATTTAGGCTCATCGGATCAT+TGG - chr4.3:30534987-30535006 MS.gene031693:CDS 40.0%
GCTGCAAAAGCAATGATCAA+AGG - chr4.3:30535131-30535150 MS.gene031693:intron 40.0%
GGCCTTTCCATGATATTGAA+AGG + chr4.3:30534822-30534841 None:intergenic 40.0%
GGTAAGGTAGCAGTTATAAC+AGG - chr4.3:30534625-30534644 MS.gene031693:CDS 40.0%
GTTAATTGTGTTTCTCCGCA+CGG - chr4.3:30535299-30535318 MS.gene031693:CDS 40.0%
TCCTTCATAGCCTGCAATTA+CGG + chr4.3:30535027-30535046 None:intergenic 40.0%
TTCAACAATGCAGGAATTGC+AGG - chr4.3:30534856-30534875 MS.gene031693:CDS 40.0%
TTGCAGCATGTTTGATTCCA+TGG + chr4.3:30535118-30535137 None:intergenic 40.0%
! AACAACTGATGATGTTGCAC+AGG - chr4.3:30535439-30535458 MS.gene031693:intron 40.0%
! ATCAATTGATTCAGCAACCC+TGG + chr4.3:30534743-30534762 None:intergenic 40.0%
! GCTGATGTTCTAGATGAAGA+AGG - chr4.3:30534715-30534734 MS.gene031693:CDS 40.0%
!! GCATTCAAAAGCATCTCAGA+AGG + chr4.3:30535329-30535348 None:intergenic 40.0%
!! GGATGGATTAATGAGAAGTG+CGG - chr4.3:30535247-30535266 MS.gene031693:CDS 40.0%
AACAATGCAGGAATTGCAGG+TGG - chr4.3:30534859-30534878 MS.gene031693:CDS 45.0%
ACAATGCAGGAATTGCAGGT+GGG - chr4.3:30534860-30534879 MS.gene031693:CDS 45.0%
CCTTCATAGCCTGCAATTAC+GGG + chr4.3:30535026-30535045 None:intergenic 45.0%
TCAAGTGCAGCTGCAACTAT+AGG - chr4.3:30535182-30535201 MS.gene031693:intron 45.0%
! ATAGGTGGATTCGCTTCACA+TGG - chr4.3:30535200-30535219 MS.gene031693:CDS 45.0%
! GCAAGTTTGCTTAAAGGGAG+AGG - chr4.3:30535413-30535432 MS.gene031693:CDS 45.0%
!! GTTTTAACGCCCGTAATTGC+AGG - chr4.3:30535014-30535033 MS.gene031693:intron 45.0%
!! TCTAGATGAAGAAGGCACCA+GGG - chr4.3:30534723-30534742 MS.gene031693:CDS 45.0%
!! TTCTAGATGAAGAAGGCACC+AGG - chr4.3:30534722-30534741 MS.gene031693:CDS 45.0%
AGTGCAGCTGCAACTATAGG+TGG - chr4.3:30535185-30535204 MS.gene031693:intron 50.0%
CCCGTAATTGCAGGCTATGA+AGG - chr4.3:30535023-30535042 MS.gene031693:intron 50.0%
GTTATAACAGGCGGTGCAAG+AGG - chr4.3:30534637-30534656 MS.gene031693:CDS 50.0%
! AGAAGTGCGGCGTGTGAATT+AGG - chr4.3:30535260-30535279 MS.gene031693:CDS 50.0%
! GGCTCATCGGATCATTGGTT+TGG - chr4.3:30534992-30535011 MS.gene031693:CDS 50.0%
! TGCACAGGCTGCTCTGTTTT+TGG - chr4.3:30535454-30535473 MS.gene031693:intron 50.0%
ACAGGCGGTGCAAGAGGAAT+TGG - chr4.3:30534643-30534662 MS.gene031693:CDS 55.0%
ATCTCAGAAGGAACGCCGTG+CGG + chr4.3:30535317-30535336 None:intergenic 55.0%
GGAATTGCAGGTGGGTGCAA+TGG - chr4.3:30534868-30534887 MS.gene031693:CDS 55.0%
TGCAGGTGGGTGCAATGGAA+TGG - chr4.3:30534873-30534892 MS.gene031693:CDS 55.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 30534486 30535580 30534486 ID=MS.gene031693
chr4.3 mRNA 30534486 30535580 30534486 ID=MS.gene031693.t1;Parent=MS.gene031693
chr4.3 exon 30535528 30535580 30535528 ID=MS.gene031693.t1.exon1;Parent=MS.gene031693.t1
chr4.3 CDS 30535528 30535580 30535528 ID=cds.MS.gene031693.t1;Parent=MS.gene031693.t1
chr4.3 exon 30535189 30535448 30535189 ID=MS.gene031693.t1.exon2;Parent=MS.gene031693.t1
chr4.3 CDS 30535189 30535448 30535189 ID=cds.MS.gene031693.t1;Parent=MS.gene031693.t1
chr4.3 exon 30534486 30535030 30534486 ID=MS.gene031693.t1.exon3;Parent=MS.gene031693.t1
chr4.3 CDS 30534486 30535030 30534486 ID=cds.MS.gene031693.t1;Parent=MS.gene031693.t1
Gene Sequence

>MS.gene031693

ATGGAGCCACGTATGATTCAGAATGTAGAATCTCAAAATTTAGCTCCAAAAAGGTTAGTAATCTCGTTGATATATAGTCTCATTTACCTATCATATGATATTAAATTTCTTTTCTTTTGAAATGTTTTTAAGGCTACTAGGTAAGGTAGCAGTTATAACAGGCGGTGCAAGAGGAATTGGTGCTGCAACAGCAAAATTATTTGCAGAAAATGGAGCACATGTCATCATTGCTGATGTTCTAGATGAAGAAGGCACCAGGGTTGCTGAATCAATTGATGGTCTCTACATACACTGTGATGTATCCAAAGAATCTGACATTGAATCAGCAGTTAACCTTTCAATATCATGGAAAGGCCACTTAGACATAATGTTCAACAATGCAGGAATTGCAGGTGGGTGCAATGGAATGGTTTATTTTGAATTTTCGAAGAAAAAAGTGAATTAGTTTTTTTTTTTTGACAAAAAAAAAAAAAAAGTGAGTTAAAATAGTTTTGTTTGGATATTTAGGCTCATCGGATCATTGGTTTGGTTTTAACGCCCGTAATTGCAGGCTATGAAGGAAGAAGCATAACAACACTTGACATGGAAAAACTGACTCATTTACTTTCAATCAATCTCTTTGGAACAATCCATGGAATCAAACATGCTGCAAAAGCAATGATCAAAGGTAAAAAAGGAGGATCAATTATTTGTACATCAAGTGCAGCTGCAACTATAGGTGGATTCGCTTCACATGGTTATACAATGTCAAAATCAGCTATGGATGGATTAATGAGAAGTGCGGCGTGTGAATTAGGCGTTCATTTGATTCGTGTTAATTGTGTTTCTCCGCACGGCGTTCCTTCTGAGATGCTTTTGAATGCTTTTAAATGTTACGGTGAAGTTGATATGACTAGTGAACAATTGAGTGAGTTTATTGGGATGAATGCAAGTTTGCTTAAAGGGAGAGGTGCAACAACTGATGATGTTGCACAGGCTGCTCTGTTTTTGGCTAGTGATGAATCTGGATTTGTCACTGCTCATAATCTTTCAGTTGATGGTGGAATCACATCTGCTAATAGTGTTATGAGTTTCATCTACCAAGATCCTAAGTGA
Protein sequence

>MS.gene031693.t1

MEPRMIQNVESQNLAPKRLLGKVAVITGGARGIGAATAKLFAENGAHVIIADVLDEEGTRVAESIDGLYIHCDVSKESDIESAVNLSISWKGHLDIMFNNAGIAGYEGRSITTLDMEKLTHLLSINLFGTIHGIKHAAKAMIKGKKGGSIICTSSAAATIGGFASHGYTMSKSAMDGLMRSAACELGVHLIRVNCVSPHGVPSEMLLNAFKCYGEVDMTSEQLSEFIGMNASLLKGRGATTDDVAQAALFLASDESGFVTAHNLSVDGGITSANSVMSFIYQDPK