AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene042104

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042104.t1 MTR_4g133800 97.345 339 4 2 1 339 1 334 0.0 676
MS.gene042104.t1 MTR_2g437770 60.738 298 116 1 43 340 47 343 2.02e-138 396
MS.gene042104.t1 MTR_8g076820 45.151 299 154 5 51 340 35 332 2.53e-85 261
MS.gene042104.t1 MTR_2g029560 44.590 305 158 6 44 338 22 325 1.60e-84 259
MS.gene042104.t1 MTR_2g029820 44.771 306 158 6 43 338 26 330 8.14e-83 255
MS.gene042104.t1 MTR_5g021060 44.781 297 154 5 51 338 35 330 1.39e-82 254
MS.gene042104.t1 MTR_5g017860 42.071 309 170 4 38 338 19 326 3.23e-82 253
MS.gene042104.t1 MTR_5g017850 42.568 296 161 4 51 338 32 326 5.37e-82 252
MS.gene042104.t1 MTR_2g029740 44.816 299 154 6 51 339 34 331 8.90e-82 253
MS.gene042104.t1 MTR_2g029730 43.974 307 157 7 44 338 23 326 1.19e-81 252
MS.gene042104.t1 MTR_1g054205 43.269 312 165 6 38 338 16 326 6.19e-81 249
MS.gene042104.t1 MTR_2g029815 43.269 312 165 7 38 338 20 330 1.63e-80 249
MS.gene042104.t1 MTR_2g029800 43.791 306 161 6 43 338 26 330 2.64e-80 249
MS.gene042104.t1 MTR_2g029850 43.791 306 161 6 43 338 26 330 2.95e-80 248
MS.gene042104.t1 MTR_2g029830 43.464 306 162 6 43 338 25 329 1.11e-79 247
MS.gene042104.t1 MTR_2g029750 43.974 307 161 6 43 339 26 331 1.28e-79 247
MS.gene042104.t1 MTR_2g028980 42.345 307 166 6 43 339 26 331 1.46e-78 244
MS.gene042104.t1 MTR_4g114210 42.434 304 166 3 43 338 18 320 6.99e-78 241
MS.gene042104.t1 MTR_2g088770 43.042 309 167 6 38 338 18 325 9.05e-78 241
MS.gene042104.t1 MTR_2g008710 40.604 298 169 3 48 338 29 325 2.73e-77 240
MS.gene042104.t1 MTR_7g093370 41.667 312 170 6 38 338 61 371 3.33e-76 239
MS.gene042104.t1 MTR_1g022970 44.224 303 158 6 46 338 46 347 7.96e-76 237
MS.gene042104.t1 MTR_4g031140 42.617 298 159 7 49 338 31 324 1.13e-75 236
MS.gene042104.t1 MTR_2g029860 42.258 310 168 6 39 338 22 330 4.74e-75 235
MS.gene042104.t1 MTR_2g029910 43.182 308 161 8 43 338 27 332 5.12e-75 235
MS.gene042104.t1 MTR_3g092990 42.053 302 165 5 46 338 26 326 1.33e-74 233
MS.gene042104.t1 MTR_4g029200 40.432 324 175 7 25 338 23 338 4.49e-74 232
MS.gene042104.t1 MTR_4g122640 41.860 301 155 8 51 338 43 336 5.30e-74 232
MS.gene042104.t1 MTR_8g075100 43.522 301 155 5 46 338 26 319 1.78e-73 230
MS.gene042104.t1 MTR_7g072510 41.118 304 163 6 43 338 17 312 3.81e-73 229
MS.gene042104.t1 MTR_4g127670 42.193 301 165 5 46 338 24 323 5.72e-73 229
MS.gene042104.t1 MTR_4g083710 40.260 308 165 8 43 338 24 324 6.56e-73 229
MS.gene042104.t1 MTR_4g087965 39.535 344 181 8 6 335 13 343 1.97e-72 228
MS.gene042104.t1 MTR_6g027440 42.157 306 168 5 38 338 13 314 3.11e-72 227
MS.gene042104.t1 MTR_4g046713 40.323 310 176 5 37 338 18 326 6.65e-72 226
MS.gene042104.t1 MTR_5g014100 44.516 310 153 8 45 338 25 331 8.11e-72 226
MS.gene042104.t1 MTR_2g040000 40.566 318 173 7 34 338 17 331 1.28e-71 226
MS.gene042104.t1 MTR_5g074970 40.328 305 162 6 46 338 30 326 1.40e-71 225
MS.gene042104.t1 MTR_1g038680 40.924 303 166 6 48 338 31 332 2.78e-71 225
MS.gene042104.t1 MTR_3g466200 40.064 312 168 6 38 338 17 320 2.81e-71 224
MS.gene042104.t1 MTR_1g101830 40.397 302 171 3 43 338 24 322 3.65e-70 222
MS.gene042104.t1 MTR_2g084080 39.803 304 167 5 43 338 22 317 4.84e-70 221
MS.gene042104.t1 MTR_7g107520 42.712 295 158 6 51 338 30 320 6.09e-70 221
MS.gene042104.t1 MTR_4g125940 40.264 303 170 6 46 338 28 329 6.10e-70 221
MS.gene042104.t1 MTR_7g086820 40.656 305 173 5 39 339 13 313 6.66e-70 221
MS.gene042104.t1 MTR_1g086490 42.173 313 159 9 46 338 30 340 9.73e-70 221
MS.gene042104.t1 MTR_4g074995 39.088 307 157 7 43 338 21 308 1.13e-69 220
MS.gene042104.t1 MTR_5g016010 38.961 308 176 6 41 337 22 328 1.79e-69 220
MS.gene042104.t1 MTR_5g022870 41.333 300 163 5 46 338 23 316 2.82e-69 219
MS.gene042104.t1 MTR_4g030890 41.275 298 163 7 49 338 103 396 3.59e-69 222
MS.gene042104.t1 MTR_1g009750 41.254 303 167 6 46 338 27 328 3.84e-69 219
MS.gene042104.t1 MTR_2g084090 39.057 297 164 5 51 338 30 318 1.71e-68 217
MS.gene042104.t1 MTR_5g049280 38.658 313 178 6 39 338 26 337 1.81e-68 218
MS.gene042104.t1 MTR_1g025980 41.000 300 163 5 46 337 24 317 1.61e-67 215
MS.gene042104.t1 MTR_1g086320 42.157 306 162 9 46 338 30 333 2.01e-67 215
MS.gene042104.t1 MTR_3g072190 41.528 301 160 6 46 338 26 318 4.08e-67 214
MS.gene042104.t1 MTR_4g029170 40.264 303 163 7 46 338 27 321 4.17e-67 214
MS.gene042104.t1 MTR_3g094650 39.404 302 165 6 43 334 25 318 5.27e-67 213
MS.gene042104.t1 MTR_2g084110 39.145 304 169 5 43 338 22 317 8.60e-67 213
MS.gene042104.t1 MTR_1g077000 38.176 296 173 3 46 338 39 327 1.44e-66 213
MS.gene042104.t1 MTR_5g083860 39.216 306 168 6 43 338 28 325 2.89e-66 212
MS.gene042104.t1 MTR_5g074710 40.823 316 165 11 37 339 16 322 3.01e-66 211
MS.gene042104.t1 MTR_2g029830 43.798 258 134 6 91 338 5 261 3.72e-66 210
MS.gene042104.t1 MTR_2g067440 36.890 328 170 6 46 337 60 386 4.18e-66 213
MS.gene042104.t1 MTR_7g072480 38.511 309 174 6 38 338 16 316 4.49e-66 211
MS.gene042104.t1 MTR_4g029180 39.799 299 162 7 50 338 31 321 9.17e-66 210
MS.gene042104.t1 MTR_4g029190 39.144 327 177 10 25 338 23 340 9.59e-66 211
MS.gene042104.t1 MTR_2g084010 39.933 298 160 8 51 338 30 318 1.40e-65 210
MS.gene042104.t1 MTR_8g062780 38.782 312 180 6 37 338 14 324 5.26e-65 209
MS.gene042104.t1 MTR_5g074760 40.506 316 166 11 37 339 16 322 8.54e-65 208
MS.gene042104.t1 MTR_4g125940 41.758 273 148 6 76 338 3 274 9.93e-65 206
MS.gene042104.t1 MTR_1g090760 37.459 307 180 6 44 339 26 331 1.82e-64 207
MS.gene042104.t1 MTR_7g086870 41.137 299 161 6 46 338 22 311 2.63e-64 206
MS.gene042104.t1 MTR_2g084020 38.384 297 166 7 51 338 30 318 8.79e-64 205
MS.gene042104.t1 MTR_3g094670 38.436 307 171 5 38 334 20 318 2.46e-63 204
MS.gene042104.t1 MTR_3g092990 39.735 302 161 6 46 338 26 315 2.65e-63 204
MS.gene042104.t1 MTR_2g099175 39.088 307 176 6 42 339 32 336 5.49e-63 204
MS.gene042104.t1 MTR_2g084000 39.088 307 166 7 43 338 23 319 6.54e-63 203
MS.gene042104.t1 MTR_5g074740 39.557 316 169 11 37 339 16 322 8.25e-63 202
MS.gene042104.t1 MTR_7g026990 39.865 296 163 6 50 338 35 322 1.03e-62 202
MS.gene042104.t1 MTR_5g074860 39.103 312 168 10 39 337 22 324 1.45e-62 202
MS.gene042104.t1 MTR_6g043240 38.487 304 174 6 40 338 36 331 1.61e-62 203
MS.gene042104.t1 MTR_4g074990 37.785 307 158 8 43 338 21 305 1.83e-62 201
MS.gene042104.t1 MTR_2g078610 35.866 329 171 6 46 335 76 403 2.88e-62 204
MS.gene042104.t1 MTR_3g466180 40.968 310 167 6 37 338 22 323 2.93e-62 201
MS.gene042104.t1 MTR_0155s0040 34.564 298 185 3 44 338 25 315 4.04e-62 201
MS.gene042104.t1 MTR_4g095450 38.742 302 168 6 44 334 25 320 8.67e-62 200
MS.gene042104.t1 MTR_6g043280 37.124 299 175 5 46 338 41 332 2.53e-61 199
MS.gene042104.t1 MTR_3g094630 39.550 311 170 6 38 338 20 322 3.48e-61 199
MS.gene042104.t1 MTR_2g077990 35.866 329 171 6 46 335 76 403 4.37e-61 201
MS.gene042104.t1 MTR_2g008160 38.361 305 177 5 43 338 21 323 4.48e-61 198
MS.gene042104.t1 MTR_1g066380 37.662 308 166 6 46 338 27 323 1.54e-60 197
MS.gene042104.t1 MTR_0286s0010 39.414 307 172 9 43 338 31 334 2.33e-60 197
MS.gene042104.t1 MTR_6g008075 39.414 307 172 9 43 338 31 334 2.33e-60 197
MS.gene042104.t1 MTR_3g467600 35.328 351 187 10 1 338 1 324 4.58e-60 196
MS.gene042104.t1 MTR_2g008730 36.577 298 157 4 48 338 29 301 2.36e-59 193
MS.gene042104.t1 MTR_1g066710 37.255 306 176 6 43 338 24 323 2.89e-59 194
MS.gene042104.t1 MTR_6g043460 39.274 303 168 7 40 334 30 324 1.10e-58 193
MS.gene042104.t1 MTR_1g066640 36.013 311 173 6 43 338 24 323 2.10e-58 191
MS.gene042104.t1 MTR_2g078280 35.962 317 164 5 46 323 76 392 8.05e-58 192
MS.gene042104.t1 MTR_1g115900 38.361 305 170 7 44 338 25 321 8.06e-58 190
MS.gene042104.t1 MTR_0147s0010 36.278 317 167 7 45 337 76 381 3.06e-57 190
MS.gene042104.t1 MTR_1g009750 37.793 299 166 6 46 338 27 311 4.30e-57 187
MS.gene042104.t1 MTR_7g029030 37.621 311 179 6 37 338 16 320 4.69e-57 188
MS.gene042104.t1 MTR_4g132490 34.437 302 186 5 46 338 29 327 1.57e-56 187
MS.gene042104.t1 MTR_4g074980 36.213 301 159 8 43 338 22 294 6.96e-54 179
MS.gene042104.t1 MTR_4g074980 39.496 238 127 6 43 269 22 253 8.49e-53 175
MS.gene042104.t1 MTR_1g066680 34.740 308 180 7 43 338 24 322 9.53e-53 177
MS.gene042104.t1 MTR_5g033470 34.528 307 185 6 46 338 73 377 1.06e-52 178
MS.gene042104.t1 MTR_3g072190 40.856 257 136 6 90 338 3 251 1.36e-52 174
MS.gene042104.t1 MTR_4g132110 35.738 305 178 6 46 339 32 329 1.58e-51 174
MS.gene042104.t1 MTR_2g067450 35.484 310 171 9 46 337 11 309 7.90e-51 171
MS.gene042104.t1 MTR_4g132110 35.161 310 178 7 46 339 32 334 3.01e-49 168
MS.gene042104.t1 MTR_3g105790 36.424 302 183 6 44 338 23 322 4.92e-49 167
MS.gene042104.t1 MTR_1g066380 36.604 265 142 6 89 338 2 255 1.02e-47 162
MS.gene042104.t1 MTR_2g029880 43.684 190 96 4 152 338 7 188 1.53e-44 152
MS.gene042104.t1 MTR_2g008160 34.098 305 155 5 43 338 21 288 1.61e-44 154
MS.gene042104.t1 MTR_5g074860 33.333 312 147 10 39 337 22 285 2.55e-43 151
MS.gene042104.t1 MTR_2g008160 45.181 166 90 1 46 210 24 189 2.59e-41 143
MS.gene042104.t1 MTR_5g074700 37.447 235 119 10 112 339 2 215 3.05e-36 130
MS.gene042104.t1 MTR_7g072490 35.498 231 88 5 92 318 2 175 5.52e-35 127
MS.gene042104.t1 MTR_3g105790 35.887 248 150 6 98 338 1 246 5.74e-33 123
MS.gene042104.t1 MTR_2g078560 33.186 226 115 6 147 337 95 319 2.90e-30 117
MS.gene042104.t1 MTR_2g077980 29.304 273 149 7 105 335 11 281 1.46e-29 115
MS.gene042104.t1 MTR_3g072260 48.077 104 50 2 51 150 31 134 2.08e-27 105
MS.gene042104.t1 MTR_3g072210 35.938 192 109 6 153 338 55 238 1.15e-23 97.8
MS.gene042104.t1 MTR_4g114220 48.235 85 38 1 65 149 22 100 3.70e-21 88.6
MS.gene042104.t1 MTR_6g048160 55.224 67 30 0 85 151 22 88 4.38e-21 86.7
MS.gene042104.t1 MTR_7g086790 34.969 163 85 5 93 252 17 161 3.02e-20 87.4
MS.gene042104.t1 MTR_1g089005 38.655 119 64 2 45 154 14 132 6.12e-20 85.5
MS.gene042104.t1 MTR_5g058120 36.054 147 81 3 190 334 20 155 4.49e-19 85.9
MS.gene042104.t1 MTR_7g086810 37.607 117 51 1 44 160 4 98 3.13e-17 80.1
MS.gene042104.t1 MTR_7g086785 35.507 138 80 3 91 224 3 135 7.36e-16 73.9
MS.gene042104.t1 MTR_3g462850 32.394 142 87 4 205 338 9 149 5.22e-14 68.9
MS.gene042104.t1 MTR_1g098320 41.250 80 46 1 260 339 47 125 1.48e-13 67.4
MS.gene042104.t1 MTR_5g074770 38.889 90 51 3 250 337 21 108 2.30e-12 63.2
MS.gene042104.t1 MTR_4g012865 42.105 76 38 2 45 114 76 151 1.65e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene042104.t1 AT1G30870 50.667 300 146 2 41 338 46 345 9.42e-107 316
MS.gene042104.t1 AT5G66390 46.128 297 150 5 51 338 38 333 7.45e-87 265
MS.gene042104.t1 AT4G36430 44.482 299 156 6 49 338 33 330 2.91e-84 258
MS.gene042104.t1 AT2G18150 44.147 299 157 5 49 338 39 336 1.46e-83 256
MS.gene042104.t1 AT2G38390 45.603 307 155 6 43 338 28 333 5.03e-83 256
MS.gene042104.t1 AT5G64120 43.377 302 166 3 40 338 29 328 2.06e-81 251
MS.gene042104.t1 AT3G03670 41.234 308 173 4 38 338 15 321 1.63e-80 248
MS.gene042104.t1 AT2G38380 45.603 307 155 6 43 338 28 333 6.49e-80 248
MS.gene042104.t1 AT1G05240 44.040 302 160 6 45 338 25 325 7.78e-80 246
MS.gene042104.t1 AT1G05250 44.040 302 160 6 45 338 25 325 7.78e-80 246
MS.gene042104.t1 AT5G06730 42.308 312 169 6 37 338 24 334 1.71e-79 247
MS.gene042104.t1 AT3G50990 44.013 309 153 7 44 338 39 341 1.85e-79 246
MS.gene042104.t1 AT2G41480 41.722 302 167 3 45 338 28 328 1.92e-79 246
MS.gene042104.t1 AT3G01190 44.295 298 159 5 46 338 26 321 2.61e-79 245
MS.gene042104.t1 AT5G17820 41.196 301 174 3 38 338 16 313 2.82e-79 245
MS.gene042104.t1 AT2G18140 43.771 297 157 5 51 338 40 335 3.65e-79 245
MS.gene042104.t1 AT5G17820 39.385 325 184 4 24 338 45 366 1.45e-78 244
MS.gene042104.t1 AT3G32980 44.805 308 157 6 43 338 28 334 6.87e-78 243
MS.gene042104.t1 AT1G05260 43.042 309 167 5 38 338 18 325 1.18e-77 241
MS.gene042104.t1 AT3G49110 42.857 308 163 6 43 338 30 336 1.69e-77 241
MS.gene042104.t1 AT4G11290 45.098 306 157 6 43 338 22 326 2.54e-77 240
MS.gene042104.t1 AT1G49570 41.077 297 163 5 51 336 53 348 3.42e-77 241
MS.gene042104.t1 AT5G15180 39.823 339 181 7 6 338 8 329 3.88e-77 240
MS.gene042104.t1 AT4G08780 43.322 307 161 7 44 338 22 327 3.93e-77 240
MS.gene042104.t1 AT4G08770 43.322 307 161 7 44 338 22 327 5.38e-77 240
MS.gene042104.t1 AT3G49120 43.322 307 161 7 44 338 30 335 7.78e-77 240
MS.gene042104.t1 AT1G44970 44.295 298 155 6 51 338 50 346 9.23e-77 239
MS.gene042104.t1 AT3G21770 43.464 306 164 6 38 335 21 325 5.55e-76 237
MS.gene042104.t1 AT2G39040 43.366 309 161 7 43 338 43 350 5.98e-76 238
MS.gene042104.t1 AT5G06720 40.705 312 174 6 37 338 23 333 1.85e-75 236
MS.gene042104.t1 AT5G64100 43.051 295 162 5 48 338 39 331 6.93e-75 234
MS.gene042104.t1 AT5G39580 42.712 295 163 4 48 338 27 319 1.99e-74 233
MS.gene042104.t1 AT2G22420 41.722 302 154 6 51 339 28 320 1.13e-73 231
MS.gene042104.t1 AT5G51890 40.968 310 171 4 37 338 17 322 1.97e-73 230
MS.gene042104.t1 AT5G64110 41.558 308 168 6 37 338 29 330 2.76e-73 230
MS.gene042104.t1 AT1G68850 39.617 313 174 6 40 338 24 335 8.34e-73 229
MS.gene042104.t1 AT4G25980 41.118 304 169 5 44 338 24 326 2.47e-72 227
MS.gene042104.t1 AT5G19890 39.803 304 172 4 43 338 27 327 5.01e-72 227
MS.gene042104.t1 AT4G16270 40.789 304 166 7 45 338 49 348 5.48e-72 227
MS.gene042104.t1 AT5G19880 41.558 308 166 7 44 338 23 329 8.30e-72 226
MS.gene042104.t1 AT2G34060 40.988 344 189 6 3 334 1 342 1.34e-70 224
MS.gene042104.t1 AT1G14550 40.196 306 166 7 43 338 23 321 6.71e-70 221
MS.gene042104.t1 AT4G37520 39.869 306 172 6 44 338 25 329 3.84e-69 219
MS.gene042104.t1 AT4G30170 40.264 303 171 6 44 338 25 325 5.67e-69 219
MS.gene042104.t1 AT2G43480 40.667 300 165 6 50 338 38 335 6.66e-69 219
MS.gene042104.t1 AT3G49960 39.739 307 171 6 44 338 25 329 1.54e-68 218
MS.gene042104.t1 AT5G24070 40.514 311 170 7 39 338 29 335 1.01e-67 216
MS.gene042104.t1 AT4G17690 39.365 315 175 6 36 340 16 324 1.13e-67 215
MS.gene042104.t1 AT2G18980 40.924 303 169 6 44 338 23 323 1.61e-67 215
MS.gene042104.t1 AT2G35380 40.968 310 156 8 49 338 33 335 2.79e-67 215
MS.gene042104.t1 AT5G22410 39.482 309 166 7 44 334 16 321 4.65e-67 214
MS.gene042104.t1 AT4G37530 39.465 299 169 5 51 338 32 329 5.05e-67 214
MS.gene042104.t1 AT4G37520 39.542 306 170 7 44 338 25 326 5.69e-67 214
MS.gene042104.t1 AT5G05340 37.582 306 173 5 43 338 27 324 1.70e-66 212
MS.gene042104.t1 AT5G42180 37.209 344 181 6 1 337 1 316 5.33e-66 211
MS.gene042104.t1 AT1G77100 39.344 305 168 6 44 338 22 319 2.75e-65 209
MS.gene042104.t1 AT5G14130 38.188 309 183 6 37 338 23 330 6.05e-65 208
MS.gene042104.t1 AT1G71695 38.411 302 171 6 46 338 44 339 8.71e-65 209
MS.gene042104.t1 AT5G47000 39.016 305 171 6 44 338 31 330 1.75e-64 207
MS.gene042104.t1 AT5G14130 38.188 309 183 6 37 338 64 371 2.49e-64 208
MS.gene042104.t1 AT5G67400 38.050 318 184 6 33 338 13 329 7.12e-64 206
MS.gene042104.t1 AT4G33420 38.176 296 173 3 46 338 37 325 2.34e-63 204
MS.gene042104.t1 AT4G33420 38.176 296 173 3 46 338 84 372 1.38e-62 204
MS.gene042104.t1 AT1G14540 36.656 311 181 7 37 338 12 315 1.81e-62 202
MS.gene042104.t1 AT4G33870 34.925 335 173 6 44 335 66 398 1.98e-61 202
MS.gene042104.t1 AT4G26010 38.235 306 174 7 38 338 14 309 8.46e-61 197
MS.gene042104.t1 AT4G26010 38.235 306 174 7 38 338 42 337 1.24e-60 197
MS.gene042104.t1 AT5G58390 36.482 307 176 5 43 338 18 316 5.24e-60 195
MS.gene042104.t1 AT2G24800 39.016 305 172 6 44 338 29 329 5.82e-60 196
MS.gene042104.t1 AT4G31760 38.585 311 178 6 37 338 20 326 3.28e-58 191
MS.gene042104.t1 AT5G40150 37.908 306 174 7 43 338 29 328 1.57e-57 189
MS.gene042104.t1 AT5G58400 35.831 307 178 6 43 338 27 325 7.50e-56 185
MS.gene042104.t1 AT3G28200 36.928 306 176 7 43 338 18 316 1.62e-55 184
MS.gene042104.t1 AT4G37530 38.645 251 143 4 51 290 32 282 1.88e-55 182
MS.gene042104.t1 AT1G34510 36.601 306 179 6 38 338 14 309 3.49e-54 180
MS.gene042104.t1 AT1G24110 37.460 315 182 7 36 340 15 324 1.54e-53 179
MS.gene042104.t1 AT2G37130 36.184 304 177 7 46 338 30 327 1.36e-51 174
MS.gene042104.t1 AT2G37130 36.093 302 176 7 48 338 1 296 2.45e-51 172
MS.gene042104.t1 AT4G21960 35.831 307 181 5 43 339 28 328 8.10e-51 172
MS.gene042104.t1 AT3G17070 34.528 307 182 7 46 338 38 339 2.06e-49 169
MS.gene042104.t1 AT2G35380 39.683 252 128 7 104 338 3 247 4.05e-48 162
MS.gene042104.t1 AT4G25980 46.951 164 86 1 46 208 71 234 8.89e-47 160
MS.gene042104.t1 AT5G39580 45.614 171 93 0 48 218 27 197 4.70e-46 157
MS.gene042104.t1 AT2G24800 43.114 167 90 2 44 207 29 193 1.17e-37 135
MS.gene042104.t1 AT3G17070 33.716 261 154 7 92 338 21 276 2.18e-35 130
MS.gene042104.t1 AT4G08390 27.273 275 146 10 78 328 124 368 1.18e-12 68.6
MS.gene042104.t1 AT4G08390 27.273 275 146 10 78 328 125 369 1.36e-12 68.6
MS.gene042104.t1 AT4G08390 27.273 275 146 10 78 328 125 369 1.36e-12 68.6
MS.gene042104.t1 AT4G08390 27.273 275 146 10 78 328 125 369 1.36e-12 68.6

Find 69 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTAAGGTTTGTGTAAT+AGG 0.182163 8.3:+828435 None:intergenic
TGGAACCAAATTGGCTTCTT+TGG 0.214684 8.3:+828723 None:intergenic
AAATGGTCCTCCTGCTAAAA+TGG 0.257858 8.3:+828789 None:intergenic
AATAGCCAAAGAAGCCAATT+TGG 0.262460 8.3:-828728 MS.gene042104:CDS
GTTGAGGAAAAGATGTAAAA+AGG 0.309627 8.3:-828509 MS.gene042104:CDS
CTTGATTTGGTTACTCTCTC+AGG 0.311030 8.3:-828640 MS.gene042104:CDS
CTTGTTATTCTGTTATGAAT+AGG 0.321414 8.3:-828594 MS.gene042104:CDS
CTTTGATTTCATCAATCAAT+TGG 0.323783 8.3:+828884 None:intergenic
ACAATCCAGCCTTCCTCTTA+AGG 0.324593 8.3:+828422 None:intergenic
ATGTCCTTGTGGAACCAAAT+TGG 0.333909 8.3:+828714 None:intergenic
GAAAACATCACAGGTTTGAT+TGG 0.345348 8.3:-828691 MS.gene042104:CDS
TCAGCACATGATACTGTTCT+TGG 0.346220 8.3:+828841 None:intergenic
AGGACTTGACATGCTTGATT+TGG 0.346446 8.3:-828653 MS.gene042104:CDS
ACTCTGATTTCACCTTCATT+TGG 0.351387 8.3:+828262 None:intergenic
GGCTTCAGGAGGTGGTAATA+AGG 0.358857 8.3:+829342 None:intergenic
TGATGGATGGGGCCAAGGTG+GGG 0.369478 8.3:+829233 None:intergenic
GCTCAAAGATGATCACAAAA+AGG 0.369930 8.3:+829425 None:intergenic
AATAGGATTTACAATTTCAA+TGG 0.371608 8.3:-828577 MS.gene042104:CDS
CTCTCAGGTTCACACACAAT+TGG 0.380035 8.3:-828625 MS.gene042104:CDS
ATTTACAATTTCAATGGAAC+TGG 0.385176 8.3:-828571 MS.gene042104:CDS
CCGAATGGAACTTCCCAAAA+TGG 0.397287 8.3:+828772 None:intergenic
CCTGAAGCCTTGCTTTCCAT+TGG 0.398050 8.3:-829328 MS.gene042104:CDS
GAGATAATGCCTTCAGCATC+AGG 0.407328 8.3:+829286 None:intergenic
ATGATGGATGGGGCCAAGGT+GGG 0.408607 8.3:+829232 None:intergenic
CCTATTACACAAACCTTAAG+AGG 0.412399 8.3:-828435 MS.gene042104:CDS
GAGCTAAGCACCAATGTCTA+TGG 0.426739 8.3:-829406 MS.gene042104:CDS
GATGATGGATGGGGCCAAGG+TGG 0.439097 8.3:+829231 None:intergenic
CCAATGGAAAGCAAGGCTTC+AGG 0.453917 8.3:+829328 None:intergenic
GCGGATGATGGATGGGGCCA+AGG 0.455184 8.3:+829228 None:intergenic
TTACTCTAACGGCACAATCA+TGG 0.460833 8.3:+829197 None:intergenic
CAGTTCTCTCACTTCCTACA+TGG 0.468363 8.3:+828935 None:intergenic
CTGTGTCAATGGTGAAGCTT+GGG 0.470698 8.3:-828306 MS.gene042104:CDS
ACAAACCTTAAGAGGAAGGC+TGG 0.477732 8.3:-828427 MS.gene042104:CDS
TCTCAGGTTCACACACAATT+GGG 0.482097 8.3:-828624 MS.gene042104:CDS
TAGTCAGTTTGCTGTGTCAA+TGG 0.495927 8.3:-828317 MS.gene042104:CDS
GTTCCATTCGGTCGAAAAGA+CGG 0.504042 8.3:-828760 MS.gene042104:CDS
GTTGCAAATAAATCCACAAA+AGG 0.515951 8.3:+828358 None:intergenic
ATGGAAATGCAAGCGGATGA+TGG 0.516652 8.3:+829216 None:intergenic
AAATGCAAGCGGATGATGGA+TGG 0.518541 8.3:+829220 None:intergenic
GAAAGCAAGGCTTCAGGAGG+TGG 0.522486 8.3:+829334 None:intergenic
CAGCATCAGGACATGTTGAA+TGG 0.523120 8.3:+829299 None:intergenic
AATGCAAGCGGATGATGGAT+GGG 0.526514 8.3:+829221 None:intergenic
TAGGTTGTGTCAAAAGTCCT+TGG 0.531220 8.3:+828454 None:intergenic
GCTGTGTCAATGGTGAAGCT+TGG 0.532361 8.3:-828307 MS.gene042104:CDS
AAAGGAACAATGATAGGTAG+TGG 0.543023 8.3:+829443 None:intergenic
TCTATTACTTGAAGATGTTG+AGG 0.548402 8.3:-828525 MS.gene042104:CDS
AATCAATTGGAACCCTCTCA+AGG 0.559103 8.3:+828897 None:intergenic
TTTATAATGCAGGGATGTGA+TGG 0.559245 8.3:-828973 MS.gene042104:intron
TTTGCGAGTAAAACCTTGAG+AGG 0.562401 8.3:-828910 MS.gene042104:CDS
TATGTGATTAATTACTCTAA+CGG 0.565133 8.3:+829186 None:intergenic
ATGCAAGCGGATGATGGATG+GGG 0.570928 8.3:+829222 None:intergenic
AGTAATAGATGTTAAGTGAA+GGG 0.577076 8.3:+828539 None:intergenic
TCCTTGGTGTTATAACATCA+AGG 0.582931 8.3:+828470 None:intergenic
GGTTAAGAAGGACCCCACCT+TGG 0.591034 8.3:-829245 MS.gene042104:CDS
TAGATGTTAAGTGAAGGGTC+AGG 0.595760 8.3:+828544 None:intergenic
AAGTAATAGATGTTAAGTGA+AGG 0.596172 8.3:+828538 None:intergenic
TTCAGGAGGTGGTAATAAGG+AGG 0.602748 8.3:+829345 None:intergenic
TGTTGAATGGTAGTGACCAA+TGG 0.605232 8.3:+829312 None:intergenic
TTACACAAACCTTAAGAGGA+AGG 0.605391 8.3:-828431 MS.gene042104:CDS
TCAACATGTCCTGATGCTGA+AGG 0.605951 8.3:-829295 MS.gene042104:CDS
GTAGTGACCAATGGAAAGCA+AGG 0.614327 8.3:+829321 None:intergenic
CACAATCATGGAAATGCAAG+CGG 0.619430 8.3:+829209 None:intergenic
CAAGGACATGAAAACATCAC+AGG 0.621625 8.3:-828700 MS.gene042104:CDS
TTGCGAGTAAAACCTTGAGA+GGG 0.625287 8.3:-828909 MS.gene042104:CDS
ATGGAAAGCAAGGCTTCAGG+AGG 0.657267 8.3:+829331 None:intergenic
TCAGGAGGTGGTAATAAGGA+GGG 0.659299 8.3:+829346 None:intergenic
ACCTTGATGTTATAACACCA+AGG 0.663108 8.3:-828471 MS.gene042104:CDS
GAAGCCAATTTGGTTCCACA+AGG 0.666112 8.3:-828718 MS.gene042104:CDS
TGATGAGAGACCATAGACAT+TGG 0.725415 8.3:+829396 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTTAAAAAAAATTATTCT+AGG + chr8.3:828562-828581 None:intergenic 10.0%
!!! TTAAAGTTTACATTTGTTTT+TGG - chr8.3:828575-828594 MS.gene042104:CDS 15.0%
!! AATAGGATTTACAATTTCAA+TGG - chr8.3:829108-829127 MS.gene042104:intron 20.0%
!! TATGTGATTAATTACTCTAA+CGG + chr8.3:828502-828521 None:intergenic 20.0%
!!! TCTTATTGATTTATAATGCA+GGG - chr8.3:828703-828722 MS.gene042104:CDS 20.0%
!!! TTCTTATTGATTTATAATGC+AGG - chr8.3:828702-828721 MS.gene042104:CDS 20.0%
! AACTGACTAGTAAAAACAAA+AGG + chr8.3:829357-829376 None:intergenic 25.0%
! AAGTAATAGATGTTAAGTGA+AGG + chr8.3:829150-829169 None:intergenic 25.0%
! AGTAATAGATGTTAAGTGAA+GGG + chr8.3:829149-829168 None:intergenic 25.0%
! ATGTAAAAAGGATTTGGATT+TGG - chr8.3:829188-829207 MS.gene042104:intron 25.0%
! ATTTACAATTTCAATGGAAC+TGG - chr8.3:829114-829133 MS.gene042104:intron 25.0%
! GAAAAGATGTAAAAAGGATT+TGG - chr8.3:829182-829201 MS.gene042104:intron 25.0%
!! CTTTGATTTCATCAATCAAT+TGG + chr8.3:828804-828823 None:intergenic 25.0%
!!! ATTGGATTTTTTCAAGAAAG+AGG - chr8.3:829012-829031 MS.gene042104:intron 25.0%
!!! CTTGTTATTCTGTTATGAAT+AGG - chr8.3:829091-829110 MS.gene042104:intron 25.0%
GTTGAGGAAAAGATGTAAAA+AGG - chr8.3:829176-829195 MS.gene042104:intron 30.0%
GTTGCAAATAAATCCACAAA+AGG + chr8.3:829330-829349 None:intergenic 30.0%
TCACAAAAAGGAACAATGAT+AGG + chr8.3:828251-828270 None:intergenic 30.0%
TCTATTACTTGAAGATGTTG+AGG - chr8.3:829160-829179 MS.gene042104:intron 30.0%
! CTCACAAAAAGTTTTTGCTT+GGG - chr8.3:828419-828438 MS.gene042104:CDS 30.0%
! TAAAAGAACATCTCCTTTTG+TGG - chr8.3:829314-829333 MS.gene042104:CDS 30.0%
! TCAATTTTGCTTAACCATGT+AGG - chr8.3:828736-828755 MS.gene042104:CDS 30.0%
! TCTCACAAAAAGTTTTTGCT+TGG - chr8.3:828418-828437 MS.gene042104:CDS 30.0%
AAAGGAACAATGATAGGTAG+TGG + chr8.3:828245-828264 None:intergenic 35.0%
AATAGCCAAAGAAGCCAATT+TGG - chr8.3:828957-828976 MS.gene042104:CDS 35.0%
ACCTTGATGTTATAACACCA+AGG - chr8.3:829214-829233 MS.gene042104:CDS 35.0%
ACTCTGATTTCACCTTCATT+TGG + chr8.3:829426-829445 None:intergenic 35.0%
CCTATTACACAAACCTTAAG+AGG - chr8.3:829250-829269 MS.gene042104:CDS 35.0%
CCTCTTAAGGTTTGTGTAAT+AGG + chr8.3:829253-829272 None:intergenic 35.0%
GAAAACATCACAGGTTTGAT+TGG - chr8.3:828994-829013 MS.gene042104:intron 35.0%
GCTCAAAGATGATCACAAAA+AGG + chr8.3:828263-828282 None:intergenic 35.0%
TTACACAAACCTTAAGAGGA+AGG - chr8.3:829254-829273 MS.gene042104:CDS 35.0%
TTTATAATGCAGGGATGTGA+TGG - chr8.3:828712-828731 MS.gene042104:CDS 35.0%
! AGTTTTTGCTTGGGTTAAGA+AGG - chr8.3:828428-828447 MS.gene042104:CDS 35.0%
!! TCCTTGGTGTTATAACATCA+AGG + chr8.3:829218-829237 None:intergenic 35.0%
!!! GAGGGCTTCAATGATTTTTT+AGG + chr8.3:828324-828343 None:intergenic 35.0%
!!! GGAATGTTCAAGTTTTGACT+AGG - chr8.3:829400-829419 MS.gene042104:CDS 35.0%
AAATGGTCCTCCTGCTAAAA+TGG + chr8.3:828899-828918 None:intergenic 40.0%
AATCAATTGGAACCCTCTCA+AGG + chr8.3:828791-828810 None:intergenic 40.0%
AGGACTTGACATGCTTGATT+TGG - chr8.3:829032-829051 MS.gene042104:intron 40.0%
ATGTCCTTGTGGAACCAAAT+TGG + chr8.3:828974-828993 None:intergenic 40.0%
CAAGGACATGAAAACATCAC+AGG - chr8.3:828985-829004 MS.gene042104:intron 40.0%
CACAATCATGGAAATGCAAG+CGG + chr8.3:828479-828498 None:intergenic 40.0%
TAGATGTTAAGTGAAGGGTC+AGG + chr8.3:829144-829163 None:intergenic 40.0%
TAGGTTGTGTCAAAAGTCCT+TGG + chr8.3:829234-829253 None:intergenic 40.0%
TCAGCACATGATACTGTTCT+TGG + chr8.3:828847-828866 None:intergenic 40.0%
TCTCAGGTTCACACACAATT+GGG - chr8.3:829061-829080 MS.gene042104:intron 40.0%
TGATGAGAGACCATAGACAT+TGG + chr8.3:828292-828311 None:intergenic 40.0%
TTACTCTAACGGCACAATCA+TGG + chr8.3:828491-828510 None:intergenic 40.0%
TTGCGAGTAAAACCTTGAGA+GGG - chr8.3:828776-828795 MS.gene042104:CDS 40.0%
TTTGCGAGTAAAACCTTGAG+AGG - chr8.3:828775-828794 MS.gene042104:CDS 40.0%
! GTGATGTTTTCATGTCCTTG+TGG + chr8.3:828985-829004 None:intergenic 40.0%
! TGGAACCAAATTGGCTTCTT+TGG + chr8.3:828965-828984 None:intergenic 40.0%
! TGTTGAATGGTAGTGACCAA+TGG + chr8.3:828376-828395 None:intergenic 40.0%
! TTTAGCAGGAGGACCATTTT+GGG - chr8.3:828900-828919 MS.gene042104:CDS 40.0%
! TTTTAGCAGGAGGACCATTT+TGG - chr8.3:828899-828918 MS.gene042104:CDS 40.0%
!! AGAGATGCAACCATTTTAGC+AGG - chr8.3:828886-828905 MS.gene042104:CDS 40.0%
!! CCATTTTGGGAAGTTCCATT+CGG - chr8.3:828913-828932 MS.gene042104:CDS 40.0%
!! CTTGATTTGGTTACTCTCTC+AGG - chr8.3:829045-829064 MS.gene042104:intron 40.0%
!! TAGTCAGTTTGCTGTGTCAA+TGG - chr8.3:829368-829387 MS.gene042104:CDS 40.0%
!!! GTTTTGACTAGGCCAAATGA+AGG - chr8.3:829411-829430 MS.gene042104:CDS 40.0%
ACAAACCTTAAGAGGAAGGC+TGG - chr8.3:829258-829277 MS.gene042104:CDS 45.0%
ACAATCCAGCCTTCCTCTTA+AGG + chr8.3:829266-829285 None:intergenic 45.0%
ATGGAAATGCAAGCGGATGA+TGG + chr8.3:828472-828491 None:intergenic 45.0%
CAGCATCAGGACATGTTGAA+TGG + chr8.3:828389-828408 None:intergenic 45.0%
CAGTTCTCTCACTTCCTACA+TGG + chr8.3:828753-828772 None:intergenic 45.0%
CCGAATGGAACTTCCCAAAA+TGG + chr8.3:828916-828935 None:intergenic 45.0%
CTCTCAGGTTCACACACAAT+TGG - chr8.3:829060-829079 MS.gene042104:intron 45.0%
CTGTGTCAATGGTGAAGCTT+GGG - chr8.3:829379-829398 MS.gene042104:CDS 45.0%
GAGATAATGCCTTCAGCATC+AGG + chr8.3:828402-828421 None:intergenic 45.0%
GAGCTAAGCACCAATGTCTA+TGG - chr8.3:828279-828298 MS.gene042104:CDS 45.0%
GTAGTGACCAATGGAAAGCA+AGG + chr8.3:828367-828386 None:intergenic 45.0%
GTTCCATTCGGTCGAAAAGA+CGG - chr8.3:828925-828944 MS.gene042104:CDS 45.0%
TCAACATGTCCTGATGCTGA+AGG - chr8.3:828390-828409 MS.gene042104:CDS 45.0%
TCAGGAGGTGGTAATAAGGA+GGG + chr8.3:828342-828361 None:intergenic 45.0%
TTCAGGAGGTGGTAATAAGG+AGG + chr8.3:828343-828362 None:intergenic 45.0%
! GAAGCCAATTTGGTTCCACA+AGG - chr8.3:828967-828986 MS.gene042104:intron 45.0%
!! AAATGCAAGCGGATGATGGA+TGG + chr8.3:828468-828487 None:intergenic 45.0%
!! AATGCAAGCGGATGATGGAT+GGG + chr8.3:828467-828486 None:intergenic 45.0%
!! GATGCAACCATTTTAGCAGG+AGG - chr8.3:828889-828908 MS.gene042104:CDS 45.0%
ATGGAAAGCAAGGCTTCAGG+AGG + chr8.3:828357-828376 None:intergenic 50.0%
CCAATGGAAAGCAAGGCTTC+AGG + chr8.3:828360-828379 None:intergenic 50.0%
CCTGAAGCCTTGCTTTCCAT+TGG - chr8.3:828357-828376 MS.gene042104:CDS 50.0%
GCTGTGTCAATGGTGAAGCT+TGG - chr8.3:829378-829397 MS.gene042104:CDS 50.0%
GGCTTCAGGAGGTGGTAATA+AGG + chr8.3:828346-828365 None:intergenic 50.0%
! TTGCCGTCTTTTCGACCGAA+TGG + chr8.3:828931-828950 None:intergenic 50.0%
!! ATGCAAGCGGATGATGGATG+GGG + chr8.3:828466-828485 None:intergenic 50.0%
GAAAGCAAGGCTTCAGGAGG+TGG + chr8.3:828354-828373 None:intergenic 55.0%
GGTTAAGAAGGACCCCACCT+TGG - chr8.3:828440-828459 MS.gene042104:CDS 55.0%
!! ATGATGGATGGGGCCAAGGT+GGG + chr8.3:828456-828475 None:intergenic 55.0%
! TGATGGATGGGGCCAAGGTG+GGG + chr8.3:828455-828474 None:intergenic 60.0%
!! GATGATGGATGGGGCCAAGG+TGG + chr8.3:828457-828476 None:intergenic 60.0%
!! GCGGATGATGGATGGGGCCA+AGG + chr8.3:828460-828479 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 828234 829473 828234 ID=MS.gene042104
chr8.3 mRNA 828234 829473 828234 ID=MS.gene042104.t1;Parent=MS.gene042104
chr8.3 exon 829201 829473 829201 ID=MS.gene042104.t1.exon1;Parent=MS.gene042104.t1
chr8.3 CDS 829201 829473 829201 ID=cds.MS.gene042104.t1;Parent=MS.gene042104.t1
chr8.3 exon 828234 828983 828234 ID=MS.gene042104.t1.exon2;Parent=MS.gene042104.t1
chr8.3 CDS 828234 828983 828234 ID=cds.MS.gene042104.t1;Parent=MS.gene042104.t1
Gene Sequence

>MS.gene042104

ATGAAGTTCCACTACCTATCATTGTTCCTTTTTGTGATCATCTTTGAGCTAAGCACCAATGTCTATGGTCTCTCATCACAATTTGTGCCTAAAAAATCATTGAAGCCCTCCTTATTACCACCTCCTGAAGCCTTGCTTTCCATTGGTCACTACCATTCAACATGTCCTGATGCTGAAGGCATTATCTCACAAAAAGTTTTTGCTTGGGTTAAGAAGGACCCCACCTTGGCCCCATCCATCATCCGCTTGCATTTCCATGATTGTGCCGTTAGAGTAATTAATCACATAACTCAATCTCTTTTTAAATTTTACAAAGTTCAGTTTTCCTAGAATAATTTTTTTTAAAGTTTACATTTGTTTTTGGTCTGCACAATTATATCATATTATATTTGATATCTATAACATGTACAATATTAATTTTTAGTCTCTCAAAATAAAGACTAAAATCGATATTAGAGTGACTAATTTTTCTTATTGATTTATAATGCAGGGATGTGATGGATCAATTTTGCTTAACCATGTAGGAAGTGAGAGAACTGCTTTTGCGAGTAAAACCTTGAGAGGGTTCCAATTGATTGATGAAATCAAAGCTGAGCTAGAGAGAAGATGTCCAAGAACAGTATCATGTGCTGACATTCTCACTGCTGCTACAAGAGATGCAACCATTTTAGCAGGAGGACCATTTTGGGAAGTTCCATTCGGTCGAAAAGACGGCAAAATTTCAATAGCCAAAGAAGCCAATTTGGTTCCACAAGGACATGAAAACATCACAGGTTTGATTGGATTTTTTCAAGAAAGAGGACTTGACATGCTTGATTTGGTTACTCTCTCAGGTTCACACACAATTGGGAGAAGCACTTGTTATTCTGTTATGAATAGGATTTACAATTTCAATGGAACTGGTAAACCTGACCCTTCACTTAACATCTATTACTTGAAGATGTTGAGGAAAAGATGTAAAAAGGATTTGGATTTGGTTCACCTTGATGTTATAACACCAAGGACTTTTGACACAACCTATTACACAAACCTTAAGAGGAAGGCTGGATTGTTGTCAACAGATCAATTGTTGTTTTCAGATAAAAGAACATCTCCTTTTGTGGATTTATTTGCAACACAACCTTTTGTTTTTACTAGTCAGTTTGCTGTGTCAATGGTGAAGCTTGGGAATGTTCAAGTTTTGACTAGGCCAAATGAAGGTGAAATCAGAGTGAATTGCAATTATGTCAATCGTTTTTAA
Protein sequence

>MS.gene042104.t1

MKFHYLSLFLFVIIFELSTNVYGLSSQFVPKKSLKPSLLPPPEALLSIGHYHSTCPDAEGIISQKVFAWVKKDPTLAPSIIRLHFHDCAVRGCDGSILLNHVGSERTAFASKTLRGFQLIDEIKAELERRCPRTVSCADILTAATRDATILAGGPFWEVPFGRKDGKISIAKEANLVPQGHENITGLIGFFQERGLDMLDLVTLSGSHTIGRSTCYSVMNRIYNFNGTGKPDPSLNIYYLKMLRKRCKKDLDLVHLDVITPRTFDTTYYTNLKRKAGLLSTDQLLFSDKRTSPFVDLFATQPFVFTSQFAVSMVKLGNVQVLTRPNEGEIRVNCNYVNRF