AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene32361


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32361.t1 MTR_1g028310 98.383 371 6 0 1 371 2 372 0.0 761
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene32361.t1 AT3G20740 71.507 365 104 0 1 365 1 365 0.0 583

Find 88 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGAGTCCTGATTTCATTTA+TGG 0.161211 1.4:-13623751 None:intergenic
AGAAATGAAGTTGTTTAGTT+TGG 0.226754 1.4:+13622917 None:intergenic
GGAGATTGTTCCTTCACTTT+TGG 0.304329 1.4:-13626695 None:intergenic
GGGGCTCCGCTTGCTGTGGC+TGG 0.309712 1.4:+13623495 MS.gene32361:CDS
GGTATAATTCGAGTCATTAA+TGG 0.331826 1.4:+13623528 MS.gene32361:CDS
CATTTCAAGGCATGTGCAAT+AGG 0.337992 1.4:+13626887 MS.gene32361:CDS
TCGCCACAGTTGGTGGCAAT+CGG 0.340184 1.4:+13623075 MS.gene32361:CDS
GAAATGAAGTTGTTTAGTTT+GGG 0.348766 1.4:+13622918 None:intergenic
GACAAAGCAGTTTGCCTGAT+TGG 0.351562 1.4:-13627290 None:intergenic
TTCTTGTGATTTCCATTTCA+AGG 0.357319 1.4:+13626874 MS.gene32361:CDS
ATGAACCATATATCACATTC+AGG 0.362984 1.4:-13626845 None:intergenic
AGGATGAGTCGGTTCGGTTA+TGG 0.369014 1.4:+13623888 MS.gene32361:intron
CTGTTCCTGAATGTGATATA+TGG 0.380086 1.4:+13626840 MS.gene32361:CDS
ATAGAGGACGCTTGCCCTCT+TGG 0.383210 1.4:-13623007 None:intergenic
GTTGATTGTACTAGATGGTT+GGG 0.389994 1.4:+13624753 MS.gene32361:CDS
ATTACGTTGATTGTACTAGA+TGG 0.390980 1.4:+13624748 MS.gene32361:CDS
CTATTGCACATGCCTTGAAA+TGG 0.404472 1.4:-13626886 None:intergenic
CATATATCACATTCAGGAAC+AGG 0.408036 1.4:-13626839 None:intergenic
CTCAATCAAAATCTCCAATC+AGG 0.426061 1.4:+13627276 MS.gene32361:CDS
AGTATTATCCATGCCACAAC+TGG 0.426956 1.4:-13624134 None:intergenic
CAGCAATAACTCCTCCTTGA+AGG 0.427134 1.4:-13623219 None:intergenic
GTTCCCACAAGACAATTTCA+TGG 0.428181 1.4:-13626673 None:intergenic
CGCCACAGTTGGTGGCAATC+GGG 0.433391 1.4:+13623076 MS.gene32361:CDS
ACTAACTTTGCAATAAGAAT+AGG 0.443448 1.4:-13627173 None:intergenic
CTTGCCCTCTTGGAGGCGAT+TGG 0.444725 1.4:-13622997 None:intergenic
TGGATAATACTGTTAAGATA+TGG 0.449910 1.4:+13624146 MS.gene32361:CDS
GGGACTCCATAAATGAAATC+AGG 0.451609 1.4:+13623745 MS.gene32361:CDS
ACTATTTATCAATGCCTTCA+AGG 0.459450 1.4:+13623205 MS.gene32361:CDS
CACAGCAAGCGGAGCCCCAT+TGG 0.459961 1.4:-13623490 None:intergenic
AAAAGTGAAGGAACAATCTC+CGG 0.462918 1.4:+13626697 MS.gene32361:CDS
CATGAAAATAAGTTAAGCTT+CGG 0.467093 1.4:-13627469 None:intergenic
CGTTGATTGTACTAGATGGT+TGG 0.469880 1.4:+13624752 MS.gene32361:CDS
AAAGTGAAGGAACAATCTCC+GGG 0.472235 1.4:+13626698 MS.gene32361:CDS
TCGGTAACTTGAATTCTTCA+AGG 0.477006 1.4:+13622955 MS.gene32361:CDS
GCTGGGCATGCAATACCAAT+GGG 0.490406 1.4:+13623475 MS.gene32361:CDS
GCTGTGGCTGGAGGAGTCAA+TGG 0.492947 1.4:+13623507 MS.gene32361:CDS
GAAGAAATCACCTTCCATCA+TGG 0.495754 1.4:-13627313 None:intergenic
TGTTAAGATATGGTCTATGA+AGG 0.499381 1.4:+13624156 MS.gene32361:CDS
GGCGAAAACGTTGAAGTAGC+GGG 0.515363 1.4:-13623057 None:intergenic
GCTCCGCTTGCTGTGGCTGG+AGG 0.526253 1.4:+13623498 MS.gene32361:CDS
CAAACTGCTTTGTCCCATGA+TGG 0.528001 1.4:+13627299 MS.gene32361:CDS
TTGATTGTACTAGATGGTTG+GGG 0.530596 1.4:+13624754 MS.gene32361:CDS
GCAATCTTAAATATATCTGA+TGG 0.530601 1.4:-13624112 None:intergenic
GCTGCGACGATGGAACAATA+TGG 0.532008 1.4:+13627427 MS.gene32361:CDS
ACGATGGAACAATATGGCGC+TGG 0.535341 1.4:+13627433 MS.gene32361:CDS
TGACCATGAAATTGTCTTGT+GGG 0.535677 1.4:+13626670 MS.gene32361:CDS
AAGAAATCACCTTCCATCAT+GGG 0.537640 1.4:-13627312 None:intergenic
CAATACTTAAGACTTCATTA+CGG 0.539217 1.4:-13623961 None:intergenic
GAATTCAAGTTACCGACCAC+TGG 0.540698 1.4:-13622948 None:intergenic
AGCTGGGCATGCAATACCAA+TGG 0.542122 1.4:+13623474 MS.gene32361:CDS
ATCTGCCAGGCAACAGGGAA+GGG 0.543112 1.4:+13627117 MS.gene32361:intron
TTGAAAACAACAGCATATAG+AGG 0.543815 1.4:-13623023 None:intergenic
CTAGCAGATATCACAAGTGC+TGG 0.552395 1.4:-13623783 None:intergenic
GAGGACGCTTGCCCTCTTGG+AGG 0.553105 1.4:-13623004 None:intergenic
ACTCCTCCAGCCACAGCAAG+CGG 0.555533 1.4:-13623501 None:intergenic
TTGACCAGGATGAGTCGGTT+CGG 0.559065 1.4:+13623882 MS.gene32361:intron
TAAGATTGCCAGTTGTGGCA+TGG 0.560210 1.4:+13624126 MS.gene32361:CDS
AACTTTGCAATAAGAATAGG+AGG 0.567634 1.4:-13627170 None:intergenic
ATATTTAAGATTGCCAGTTG+TGG 0.568569 1.4:+13624121 MS.gene32361:CDS
CAATGGGGCTCCGCTTGCTG+TGG 0.568999 1.4:+13623491 MS.gene32361:CDS
CGATGGAACAATATGGCGCT+GGG 0.574058 1.4:+13627434 MS.gene32361:CDS
TTGATATTTGCTGGAGCTGG+AGG 0.577096 1.4:+13623935 MS.gene32361:CDS
GATCTGCCAGGCAACAGGGA+AGG 0.581341 1.4:+13627116 MS.gene32361:intron
GTTAAGATATGGTCTATGAA+GGG 0.585488 1.4:+13624157 MS.gene32361:CDS
TAGTTCTAACTAACCTCCCC+CGG 0.588824 1.4:-13626716 None:intergenic
AACCCGATTGCCACCAACTG+TGG 0.596131 1.4:-13623078 None:intergenic
GTCACCAATCGCCTCCAAGA+GGG 0.603232 1.4:+13622993 MS.gene32361:CDS
TTTCATTTATGGAGTCCCCA+TGG 0.605251 1.4:-13623740 None:intergenic
TGGCGAAAACGTTGAAGTAG+CGG 0.611387 1.4:-13623058 None:intergenic
TAAGGTTGACCAGGATGAGT+CGG 0.612307 1.4:+13623877 MS.gene32361:intron
TTGACCATGAAATTGTCTTG+TGG 0.623303 1.4:+13626669 MS.gene32361:CDS
TTTGGATCTGCCAGGCAACA+GGG 0.637676 1.4:+13627112 MS.gene32361:intron
CTTGTGGGAACCAAAAGTGA+AGG 0.642680 1.4:+13626685 MS.gene32361:CDS
ATGTAGAACAATCATTCACA+TGG 0.644945 1.4:+13624578 MS.gene32361:CDS
TAGTTTGGGAACTGAACCAG+TGG 0.645204 1.4:+13622932 MS.gene32361:CDS
CTGCTTTGTCCCATGATGGA+AGG 0.648872 1.4:+13627303 MS.gene32361:CDS
CGGTTATGGAATGTTCACAC+TGG 0.649169 1.4:+13623902 MS.gene32361:CDS
AGCAAACACTCACCTTTGAG+AGG 0.649424 1.4:-13624785 None:intergenic
TTGGGAACTGAACCAGTGGT+CGG 0.669095 1.4:+13622936 MS.gene32361:CDS
AAATCAGGACTCAAGCGATG+AGG 0.677691 1.4:+13623760 MS.gene32361:CDS
ATATATCACATTCAGGAACA+GGG 0.685190 1.4:-13626838 None:intergenic
TGATTGTACTAGATGGTTGG+GGG 0.686806 1.4:+13624755 MS.gene32361:CDS
ATTTATCAATGCCTTCAAGG+AGG 0.700895 1.4:+13623208 MS.gene32361:CDS
AGTCACCAATCGCCTCCAAG+AGG 0.702657 1.4:+13622992 MS.gene32361:CDS
AAGTGAAGGAACAATCTCCG+GGG 0.721249 1.4:+13626699 MS.gene32361:CDS
AGTGAAGGAACAATCTCCGG+GGG 0.721831 1.4:+13626700 MS.gene32361:CDS
TAGCGATGAGAAGTTACACA+AGG 0.725107 1.4:+13623551 MS.gene32361:CDS
CTGGGCATGCAATACCAATG+GGG 0.727775 1.4:+13623476 MS.gene32361:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTAAAAAAA+AGG + chr1.4:13623385-13623404 MS.gene32361:intron 0.0%
!! AATCAAAACAAATTAATTTA+AGG - chr1.4:13623640-13623659 None:intergenic 10.0%
!! TTTGATTCAATAATATTTAA+AGG + chr1.4:13623653-13623672 MS.gene32361:intron 10.0%
!!! ATTTTACAAATTTATACTTT+TGG - chr1.4:13624400-13624419 None:intergenic 10.0%
!! AAAACTAAAGTAAAAAGATA+AGG + chr1.4:13625703-13625722 MS.gene32361:intron 15.0%
!! ATTAAAAGTAATTCAATAGT+TGG + chr1.4:13626535-13626554 MS.gene32361:intron 15.0%
!!! AAAATTTGTTTTAACTATGA+AGG + chr1.4:13624454-13624473 MS.gene32361:intron 15.0%
!!! AAATTTGTTTTAACTATGAA+GGG + chr1.4:13624455-13624474 MS.gene32361:intron 15.0%
!!! ACTTTTAATTATTTTATCGA+AGG - chr1.4:13626524-13626543 None:intergenic 15.0%
!!! ATAAGCAATCATAATATTTT+TGG - chr1.4:13624350-13624369 None:intergenic 15.0%
!!! ATTTTGCATTTTTGTTTATT+TGG + chr1.4:13623302-13623321 MS.gene32361:intron 15.0%
!!! CTTTTAATTATTTTATCGAA+GGG - chr1.4:13626523-13626542 None:intergenic 15.0%
!!! TAAGCAATCATAATATTTTT+GGG - chr1.4:13624349-13624368 None:intergenic 15.0%
!!! TATATATTTTCCTTTTCATT+TGG + chr1.4:13626469-13626488 MS.gene32361:intron 15.0%
!!! TTATCTTTTTACTTTAGTTT+TGG - chr1.4:13625704-13625723 None:intergenic 15.0%
!!! TTTTCATACAATAACTTATA+AGG + chr1.4:13623859-13623878 MS.gene32361:intron 15.0%
!! AATGAAAAAGACAATACATT+AGG - chr1.4:13624515-13624534 None:intergenic 20.0%
!! ATAATGAAAACAAGGAATAT+TGG + chr1.4:13626222-13626241 MS.gene32361:intron 20.0%
!! ATTAAAAAAAAGGAACAAAG+TGG + chr1.4:13623395-13623414 MS.gene32361:intron 20.0%
!! CTTTGATTATTACCATAATT+TGG - chr1.4:13624035-13624054 None:intergenic 20.0%
!! GAATGGAAAAAAATAGAAAA+AGG - chr1.4:13623109-13623128 None:intergenic 20.0%
!! TAAAAGGAATAATGAAAACA+AGG + chr1.4:13626214-13626233 MS.gene32361:intron 20.0%
!! TCCAAAAGAAAAAGAAAAAA+CGG - chr1.4:13627098-13627117 None:intergenic 20.0%
!! TTAAAAAAAAGGAACAAAGT+GGG + chr1.4:13623396-13623415 MS.gene32361:intron 20.0%
!! TTTCTAAATATTCGTGTTAT+TGG + chr1.4:13627196-13627215 MS.gene32361:intron 20.0%
!!! AACAAATTTTGACCATTTTT+TGG + chr1.4:13626358-13626377 MS.gene32361:intron 20.0%
!!! AAGCAATCATAATATTTTTG+GGG - chr1.4:13624348-13624367 None:intergenic 20.0%
!!! ATAATCAAAGTTTTGACATT+TGG + chr1.4:13624045-13624064 MS.gene32361:intron 20.0%
!!! GTAACAATAATTTGTTAGTT+TGG + chr1.4:13623584-13623603 MS.gene32361:intron 20.0%
!!! TAAAATAAACTGTTACTTAC+AGG - chr1.4:13624646-13624665 None:intergenic 20.0%
! AAAATGCAAAATGTTAGACA+CGG - chr1.4:13623294-13623313 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr1.4:13624960-13624979 None:intergenic 25.0%
! AAGGTTATGTTAGAATTGAA+TGG - chr1.4:13623126-13623145 None:intergenic 25.0%
! AAGTAAAAAGATAAGGACTT+AGG + chr1.4:13625710-13625729 MS.gene32361:intron 25.0%
! AATGCTTAAACCAAATGAAA+AGG - chr1.4:13626482-13626501 None:intergenic 25.0%
! ACTAACTTTGCAATAAGAAT+AGG - chr1.4:13627176-13627195 None:intergenic 25.0%
! ACTCAACTATAAGATATATC+AGG - chr1.4:13624238-13624257 None:intergenic 25.0%
! AGAAATCTGCAATAAAATGA+AGG - chr1.4:13624552-13624571 None:intergenic 25.0%
! AGTAAAAAGATAAGGACTTA+GGG + chr1.4:13625711-13625730 MS.gene32361:intron 25.0%
! AGTAAGAAATAGAAGTTACT+CGG - chr1.4:13624079-13624098 None:intergenic 25.0%
! ATTGGATTTCAATTAGAAGT+TGG + chr1.4:13626240-13626259 MS.gene32361:intron 25.0%
! CAATAAAATGAAGGTAACAA+TGG - chr1.4:13624543-13624562 None:intergenic 25.0%
! CAATACTTAAGACTTCATTA+CGG - chr1.4:13623964-13623983 None:intergenic 25.0%
! CTTGATCAATTACCAAATTA+TGG + chr1.4:13624020-13624039 MS.gene32361:intron 25.0%
! GATACCATCAATTACATTAT+GGG - chr1.4:13624273-13624292 None:intergenic 25.0%
! GCAATCTTAAATATATCTGA+TGG - chr1.4:13624115-13624134 None:intergenic 25.0%
! TAAAATCAAACTCTTTCCAA+CGG - chr1.4:13624833-13624852 None:intergenic 25.0%
! TATAAAAAGATTCATCCTTC+TGG - chr1.4:13623449-13623468 None:intergenic 25.0%
! TGGATAATACTGTTAAGATA+TGG + chr1.4:13624146-13624165 MS.gene32361:CDS 25.0%
! TTTCTGTCTAATAATAGCAT+TGG - chr1.4:13626339-13626358 None:intergenic 25.0%
!! AATCTTTTTATACAGTAAGC+TGG + chr1.4:13623457-13623476 MS.gene32361:CDS 25.0%
!! AGATTTTAAATTGACAACAG+TGG + chr1.4:13624482-13624501 MS.gene32361:intron 25.0%
!! AGGTGATTTCTTCATATTTT+TGG + chr1.4:13627323-13627342 MS.gene32361:intron 25.0%
!! ATCTTTTTATACAGTAAGCT+GGG + chr1.4:13623458-13623477 MS.gene32361:CDS 25.0%
!! CTTTTTCTTCTTCGTTTATT+AGG + chr1.4:13623180-13623199 MS.gene32361:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG + chr1.4:13624977-13624996 MS.gene32361:intron 25.0%
!! TAACTTCTATTTCTTACTGT+AGG + chr1.4:13624081-13624100 MS.gene32361:intron 25.0%
!! TAAGTATTGTGAGTGTATTA+TGG + chr1.4:13623975-13623994 MS.gene32361:intron 25.0%
!! TAGCTTTCATCTTTTCTATA+TGG - chr1.4:13624300-13624319 None:intergenic 25.0%
!! TCATTTTATTGCAGATTTCT+GGG + chr1.4:13624552-13624571 MS.gene32361:intron 25.0%
!! TGATTTATAACTGATTCATG+AGG - chr1.4:13626309-13626328 None:intergenic 25.0%
!! TTCATCTTTTCTATATGGTA+CGG - chr1.4:13624295-13624314 None:intergenic 25.0%
!! TTCATTTTATTGCAGATTTC+TGG + chr1.4:13624551-13624570 MS.gene32361:intron 25.0%
!!! AGCAATCATAATATTTTTGG+GGG - chr1.4:13624347-13624366 None:intergenic 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr1.4:13625102-13625121 None:intergenic 25.0%
!!! TATTTTTTATGTTGACCAGA+AGG + chr1.4:13623431-13623450 MS.gene32361:intron 25.0%
!!! TCCGTTTTTTCTTTTTCTTT+TGG + chr1.4:13627094-13627113 MS.gene32361:intron 25.0%
!!! TTCCTTTTACTGTTTCTATT+TGG - chr1.4:13626203-13626222 None:intergenic 25.0%
AAAGACTGTGTAAACAGTAA+TGG - chr1.4:13626174-13626193 None:intergenic 30.0%
AACTTTGCAATAAGAATAGG+AGG - chr1.4:13627173-13627192 None:intergenic 30.0%
AAGACTGTGTAAACAGTAAT+GGG - chr1.4:13626173-13626192 None:intergenic 30.0%
AATAAACACCACAATCAAAG+TGG - chr1.4:13623337-13623356 None:intergenic 30.0%
AATAACTTATAAGGTTGACC+AGG + chr1.4:13623868-13623887 MS.gene32361:intron 30.0%
ACCAAAGTGATACCAAAAAA+TGG - chr1.4:13626373-13626392 None:intergenic 30.0%
ACTATTTATCAATGCCTTCA+AGG + chr1.4:13623205-13623224 MS.gene32361:CDS 30.0%
ATATATCACATTCAGGAACA+GGG - chr1.4:13626841-13626860 None:intergenic 30.0%
ATATCTAAACCGTGTAACTT+GGG + chr1.4:13625441-13625460 MS.gene32361:intron 30.0%
ATCTCCCATAATGTAATTGA+TGG + chr1.4:13624266-13624285 MS.gene32361:intron 30.0%
ATGAACCATATATCACATTC+AGG - chr1.4:13626848-13626867 None:intergenic 30.0%
ATGTAGAACAATCATTCACA+TGG + chr1.4:13624578-13624597 MS.gene32361:CDS 30.0%
CAATTACATTATGGGAGATA+CGG - chr1.4:13624265-13624284 None:intergenic 30.0%
GAATCATGTAAATTTCAGCT+AGG - chr1.4:13626151-13626170 None:intergenic 30.0%
GGATACCATCAATTACATTA+TGG - chr1.4:13624274-13624293 None:intergenic 30.0%
GGGTATTATTGGAACTTTAT+TGG + chr1.4:13626404-13626423 MS.gene32361:intron 30.0%
GGTATAATTCGAGTCATTAA+TGG + chr1.4:13623528-13623547 MS.gene32361:CDS 30.0%
GTAAGAAATAGAAGTTACTC+GGG - chr1.4:13624078-13624097 None:intergenic 30.0%
GTTAAGATATGGTCTATGAA+GGG + chr1.4:13624157-13624176 MS.gene32361:CDS 30.0%
GTTCTATCAAAGACCATATT+TGG + chr1.4:13624920-13624939 MS.gene32361:intron 30.0%
TAAATTTCAGCTAGGAACAA+GGG - chr1.4:13626143-13626162 None:intergenic 30.0%
TAGAAACAAGACGGAATATA+TGG - chr1.4:13625533-13625552 None:intergenic 30.0%
TATTGGAACTTTATTGGACT+TGG + chr1.4:13626410-13626429 MS.gene32361:intron 30.0%
TATTGTTATGGGAAAATCTC+CGG + chr1.4:13625753-13625772 MS.gene32361:intron 30.0%
TCTTTGATAGAACATTATGG+CGG - chr1.4:13624913-13624932 None:intergenic 30.0%
TGCCAAATAGAAACAGTAAA+AGG + chr1.4:13626198-13626217 MS.gene32361:intron 30.0%
TGGTAATTGATCAAGTCAAA+GGG - chr1.4:13624015-13624034 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG - chr1.4:13624916-13624935 None:intergenic 30.0%
TGTTAAGATATGGTCTATGA+AGG + chr1.4:13624156-13624175 MS.gene32361:CDS 30.0%
TTACACGGTTTAGATATCTT+GGG - chr1.4:13625438-13625457 None:intergenic 30.0%
TTCTTGTGATTTCCATTTCA+AGG + chr1.4:13626874-13626893 MS.gene32361:CDS 30.0%
TTGAAAACAACAGCATATAG+AGG - chr1.4:13623026-13623045 None:intergenic 30.0%
TTGAGTCCTGATTTCATTTA+TGG - chr1.4:13623754-13623773 None:intergenic 30.0%
! ATACTTTTGGATGTGATAAC+TGG - chr1.4:13624387-13624406 None:intergenic 30.0%
! ATATTTAAGATTGCCAGTTG+TGG + chr1.4:13624121-13624140 MS.gene32361:CDS 30.0%
! ATTACGTTGATTGTACTAGA+TGG + chr1.4:13624748-13624767 MS.gene32361:CDS 30.0%
! ATTTTGTGGGAAACTTAGAA+GGG - chr1.4:13624612-13624631 None:intergenic 30.0%
! CATTTTATTGCAGATTTCTG+GGG + chr1.4:13624553-13624572 MS.gene32361:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr1.4:13624955-13624974 MS.gene32361:intron 30.0%
! TATTTTGTGGGAAACTTAGA+AGG - chr1.4:13624613-13624632 None:intergenic 30.0%
! TCTACCAACTTTTCTACTAT+AGG + chr1.4:13625106-13625125 MS.gene32361:intron 30.0%
! TTGGTAATTGATCAAGTCAA+AGG - chr1.4:13624016-13624035 None:intergenic 30.0%
!! ATATTCAAATCACTGACTCA+TGG - chr1.4:13626609-13626628 None:intergenic 30.0%
!! CTTTTGAGTGCAAAGAAAAA+AGG - chr1.4:13623145-13623164 None:intergenic 30.0%
!! CTTTTGTAGATGATGATGTA+AGG + chr1.4:13623251-13623270 MS.gene32361:intron 30.0%
!! GCACTTAGTTTTCATTGATT+TGG - chr1.4:13625917-13625936 None:intergenic 30.0%
!! TTTGTTAGTTTGGAGTTTTG+TGG + chr1.4:13623594-13623613 MS.gene32361:intron 30.0%
!!! ACCATTTTTTGGTATCACTT+TGG + chr1.4:13626369-13626388 MS.gene32361:intron 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG - chr1.4:13625911-13625930 None:intergenic 30.0%
!!! ATTTTGAGATTGACTCTATG+TGG - chr1.4:13624439-13624458 None:intergenic 30.0%
!!! GTATGTGTTTTGATATTTGC+TGG + chr1.4:13623926-13623945 MS.gene32361:CDS 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG - chr1.4:13625692-13625711 None:intergenic 30.0%
AAAAGTGAAGGAACAATCTC+CGG + chr1.4:13626697-13626716 MS.gene32361:CDS 35.0%
AAATTTCAGCTAGGAACAAG+GGG - chr1.4:13626142-13626161 None:intergenic 35.0%
AACTTCAGTAAAAGGAGAAG+TGG - chr1.4:13625505-13625524 None:intergenic 35.0%
AACTTTCCTTTCAGCTTAAG+TGG + chr1.4:13625304-13625323 MS.gene32361:intron 35.0%
AAGAAAAGAGACTCACGTTA+CGG - chr1.4:13626037-13626056 None:intergenic 35.0%
AAGAAATCACCTTCCATCAT+GGG - chr1.4:13627315-13627334 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+CGG - chr1.4:13625032-13625051 None:intergenic 35.0%
ACTTCAGTAAAAGGAGAAGT+GGG - chr1.4:13625504-13625523 None:intergenic 35.0%
AGAAGATTGCGCGAATTATA+GGG - chr1.4:13626118-13626137 None:intergenic 35.0%
AGACTAGACATGATAGGATT+AGG - chr1.4:13625165-13625184 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr1.4:13624948-13624967 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG - chr1.4:13625113-13625132 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG - chr1.4:13625300-13625319 None:intergenic 35.0%
ATACCATGAAGTTATGGGAA+AGG - chr1.4:13626077-13626096 None:intergenic 35.0%
ATATCATACCCCAAGTTACA+CGG - chr1.4:13625453-13625472 None:intergenic 35.0%
ATTTATCAATGCCTTCAAGG+AGG + chr1.4:13623208-13623227 MS.gene32361:CDS 35.0%
CATATATCACATTCAGGAAC+AGG - chr1.4:13626842-13626861 None:intergenic 35.0%
CTCAATCAAAATCTCCAATC+AGG + chr1.4:13627276-13627295 MS.gene32361:CDS 35.0%
CTGTTCCTGAATGTGATATA+TGG + chr1.4:13626840-13626859 MS.gene32361:CDS 35.0%
GAAAAGATGAAAGCTATACC+AGG + chr1.4:13624304-13624323 MS.gene32361:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr1.4:13625088-13625107 None:intergenic 35.0%
GAGTCATACCATGAAGTTAT+GGG - chr1.4:13626082-13626101 None:intergenic 35.0%
GATATCTAAACCGTGTAACT+TGG + chr1.4:13625440-13625459 MS.gene32361:intron 35.0%
GGATAAACAAAAGCAACCAA+TGG - chr1.4:13624217-13624236 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG - chr1.4:13625035-13625054 None:intergenic 35.0%
GGTAATTGATCAAGTCAAAG+GGG - chr1.4:13624014-13624033 None:intergenic 35.0%
GTAAATTTCAGCTAGGAACA+AGG - chr1.4:13626144-13626163 None:intergenic 35.0%
GTAAGTGAAATAACAGAGAG+AGG - chr1.4:13623823-13623842 None:intergenic 35.0%
GTTACACGGTTTAGATATCT+TGG - chr1.4:13625439-13625458 None:intergenic 35.0%
GTTGATTGTACTAGATGGTT+GGG + chr1.4:13624753-13624772 MS.gene32361:CDS 35.0%
TACATCATCGTATTCAAGCT+GGG - chr1.4:13625378-13625397 None:intergenic 35.0%
TACCATGAAGTTATGGGAAA+GGG - chr1.4:13626076-13626095 None:intergenic 35.0%
TATCTAAACCGTGTAACTTG+GGG + chr1.4:13625442-13625461 MS.gene32361:intron 35.0%
TCGGTAACTTGAATTCTTCA+AGG + chr1.4:13622955-13622974 MS.gene32361:CDS 35.0%
TGAACACCCAAACAATGAAA+AGG - chr1.4:13626791-13626810 None:intergenic 35.0%
TGACCATGAAATTGTCTTGT+GGG + chr1.4:13626670-13626689 MS.gene32361:CDS 35.0%
TGAGTCATACCATGAAGTTA+TGG - chr1.4:13626083-13626102 None:intergenic 35.0%
TGGAATGCAACTTCAGTAAA+AGG - chr1.4:13625513-13625532 None:intergenic 35.0%
TGGCCAAGTTATCACTAAAA+TGG - chr1.4:13626589-13626608 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr1.4:13625093-13625112 None:intergenic 35.0%
TTCAATTAGAAGTTGGAACG+TGG + chr1.4:13626247-13626266 MS.gene32361:intron 35.0%
TTGACCATGAAATTGTCTTG+TGG + chr1.4:13626669-13626688 MS.gene32361:CDS 35.0%
TTGATCTACTCTTCTTACCA+CGG + chr1.4:13625036-13625055 MS.gene32361:intron 35.0%
TTGATTGTACTAGATGGTTG+GGG + chr1.4:13624754-13624773 MS.gene32361:CDS 35.0%
TTGGAAATGGTATGCTTCAA+TGG + chr1.4:13626277-13626296 MS.gene32361:intron 35.0%
TTTCATTGTTTGGGTGTTCA+GGG + chr1.4:13626791-13626810 MS.gene32361:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG - chr1.4:13625313-13625332 None:intergenic 35.0%
! AGGAAACTGCACATATTTTG+TGG - chr1.4:13624626-13624645 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr1.4:13624936-13624955 None:intergenic 35.0%
! CTTCAGCCTTTTCATTGTTT+GGG + chr1.4:13626782-13626801 MS.gene32361:intron 35.0%
! GAAAATCATGTGACTTTTCC+TGG - chr1.4:13624325-13624344 None:intergenic 35.0%
! GGAAACTGCACATATTTTGT+GGG - chr1.4:13624625-13624644 None:intergenic 35.0%
! GGAAGGGAAGATTTTTCTTT+GGG + chr1.4:13627133-13627152 MS.gene32361:CDS 35.0%
! GGAGATTTTCCCATAACAAT+AGG - chr1.4:13625754-13625773 None:intergenic 35.0%
! TCTGCAAAAAGCATACATCT+CGG + chr1.4:13625646-13625665 MS.gene32361:intron 35.0%
! TTTTCATTGTTTGGGTGTTC+AGG + chr1.4:13626790-13626809 MS.gene32361:intron 35.0%
!! ATCCTGGATAGCTCTAATAT+AGG + chr1.4:13625822-13625841 MS.gene32361:intron 35.0%
!! GGTCCATTTTAGTGATAACT+TGG + chr1.4:13626583-13626602 MS.gene32361:intron 35.0%
!! TTCTCCGTCATTTTGTACTA+CGG + chr1.4:13625411-13625430 MS.gene32361:intron 35.0%
!!! AACCAATTTGGTTTTATGCC+TGG - chr1.4:13626012-13626031 None:intergenic 35.0%
!!! ACCAATTTGGTTTTATGCCT+GGG - chr1.4:13626011-13626030 None:intergenic 35.0%
!!! TGAGGCGTTTAGTTTTATGT+CGG + chr1.4:13624180-13624199 MS.gene32361:intron 35.0%
AAACACCACAATCAAAGTGG+TGG - chr1.4:13623334-13623353 None:intergenic 40.0%
AAAGTGAAGGAACAATCTCC+GGG + chr1.4:13626698-13626717 MS.gene32361:CDS 40.0%
AACAAAACTCTGTAGGGAGA+AGG - chr1.4:13623718-13623737 None:intergenic 40.0%
AAGGCATGTGCAATAGGTAA+GGG + chr1.4:13626893-13626912 MS.gene32361:intron 40.0%
AATTTCAGCTAGGAACAAGG+GGG - chr1.4:13626141-13626160 None:intergenic 40.0%
ACAAAACTCTGTAGGGAGAA+GGG - chr1.4:13623717-13623736 None:intergenic 40.0%
ACATCATTAGAGAGAGAGTG+GGG - chr1.4:13625138-13625157 None:intergenic 40.0%
AGAAGAGTAGATCAAATGGC+GGG - chr1.4:13625031-13625050 None:intergenic 40.0%
AGCTATCCAGGATATGTATG+AGG - chr1.4:13625815-13625834 None:intergenic 40.0%
AGTATTATCCATGCCACAAC+TGG - chr1.4:13624137-13624156 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1.4:13625007-13625026 None:intergenic 40.0%
AGTTGGAAGAGAGAAAGTTG+AGG + chr1.4:13626552-13626571 MS.gene32361:intron 40.0%
ATAACAATAGGACTGCACCA+AGG - chr1.4:13625742-13625761 None:intergenic 40.0%
ATCTCCAACTTTCACCTCTA+AGG + chr1.4:13625474-13625493 MS.gene32361:intron 40.0%
ATGGCCAACAAAACTCTGTA+GGG - chr1.4:13623724-13623743 None:intergenic 40.0%
CAATTTCATGGTCAACACTC+TGG - chr1.4:13626664-13626683 None:intergenic 40.0%
CACGTTACGGATAACCAATT+TGG - chr1.4:13626024-13626043 None:intergenic 40.0%
CATATACCTCTTGTCACTAC+CGG - chr1.4:13626982-13627001 None:intergenic 40.0%
CATTTCAAGGCATGTGCAAT+AGG + chr1.4:13626887-13626906 MS.gene32361:CDS 40.0%
CTATCCAGGATATGTATGAG+GGG - chr1.4:13625813-13625832 None:intergenic 40.0%
CTATTGCACATGCCTTGAAA+TGG - chr1.4:13626889-13626908 None:intergenic 40.0%
GAAGAAATCACCTTCCATCA+TGG - chr1.4:13627316-13627335 None:intergenic 40.0%
GAAGATTGCGCGAATTATAG+GGG - chr1.4:13626117-13626136 None:intergenic 40.0%
GACATCATTAGAGAGAGAGT+GGG - chr1.4:13625139-13625158 None:intergenic 40.0%
GAGAAGATTGCGCGAATTAT+AGG - chr1.4:13626119-13626138 None:intergenic 40.0%
GCTATCCAGGATATGTATGA+GGG - chr1.4:13625814-13625833 None:intergenic 40.0%
GCTGAGTACATGGGTATTAT+TGG + chr1.4:13626393-13626412 MS.gene32361:intron 40.0%
GCTTTCCACAAAATCTCTCT+AGG + chr1.4:13625871-13625890 MS.gene32361:intron 40.0%
GGGACTCCATAAATGAAATC+AGG + chr1.4:13623745-13623764 MS.gene32361:CDS 40.0%
GTACATCATCGTATTCAAGC+TGG - chr1.4:13625379-13625398 None:intergenic 40.0%
GTGGTAAGACTAGACATGAT+AGG - chr1.4:13625171-13625190 None:intergenic 40.0%
GTTCCCACAAGACAATTTCA+TGG - chr1.4:13626676-13626695 None:intergenic 40.0%
TAACAATAGGACTGCACCAA+GGG - chr1.4:13625741-13625760 None:intergenic 40.0%
TACCCTTTCCCATAACTTCA+TGG + chr1.4:13626071-13626090 MS.gene32361:intron 40.0%
TAGCGATGAGAAGTTACACA+AGG + chr1.4:13623551-13623570 MS.gene32361:CDS 40.0%
TATCCAGGATATGTATGAGG+GGG - chr1.4:13625812-13625831 None:intergenic 40.0%
TCCCAGGCATAAAACCAAAT+TGG + chr1.4:13626007-13626026 MS.gene32361:intron 40.0%
TCTAACGTACAGCATTAGTC+CGG + chr1.4:13626960-13626979 MS.gene32361:intron 40.0%
TCTACCTTAGAGGTGAAAGT+TGG - chr1.4:13625481-13625500 None:intergenic 40.0%
TGACATCATTAGAGAGAGAG+TGG - chr1.4:13625140-13625159 None:intergenic 40.0%
TGATTGTACTAGATGGTTGG+GGG + chr1.4:13624755-13624774 MS.gene32361:CDS 40.0%
TGCCTATATTAGAGCTATCC+AGG - chr1.4:13625827-13625846 None:intergenic 40.0%
TGGTGCAGTCCTATTGTTAT+GGG + chr1.4:13625742-13625761 MS.gene32361:intron 40.0%
TTGGTGCAGTCCTATTGTTA+TGG + chr1.4:13625741-13625760 MS.gene32361:intron 40.0%
TTTCATTTATGGAGTCCCCA+TGG - chr1.4:13623743-13623762 None:intergenic 40.0%
! ACGTGGTTCAAGTTTGGAAA+TGG + chr1.4:13626264-13626283 MS.gene32361:intron 40.0%
! AGAGAGAAAGTTGAGGCATT+AGG + chr1.4:13626559-13626578 MS.gene32361:intron 40.0%
! ATTTTATCGAAGGGTTGCAG+AGG - chr1.4:13626514-13626533 None:intergenic 40.0%
! ATTTTATGTTGCTGCGACGA+TGG + chr1.4:13627417-13627436 MS.gene32361:CDS 40.0%
! CGTTGATTGTACTAGATGGT+TGG + chr1.4:13624752-13624771 MS.gene32361:CDS 40.0%
! CTTTTTCTTTTGGATCTGCC+AGG + chr1.4:13627104-13627123 MS.gene32361:intron 40.0%
! GAGTACCTAGAGAGATTTTG+TGG - chr1.4:13625879-13625898 None:intergenic 40.0%
! GCTTCAGCCTTTTCATTGTT+TGG + chr1.4:13626781-13626800 MS.gene32361:intron 40.0%
! GGAGATTGTTCCTTCACTTT+TGG - chr1.4:13626698-13626717 None:intergenic 40.0%
! GGGAAGGGAAGATTTTTCTT+TGG + chr1.4:13627132-13627151 MS.gene32361:CDS 40.0%
!! ATTCCGTCTTGTTTCTACTC+AGG + chr1.4:13625536-13625555 MS.gene32361:intron 40.0%
!! GTTTTGATATTTGCTGGAGC+TGG + chr1.4:13623932-13623951 MS.gene32361:CDS 40.0%
!! TTCTCCCTACAGAGTTTTGT+TGG + chr1.4:13623717-13623736 MS.gene32361:intron 40.0%
!!! AATTTGGTTTTATGCCTGGG+AGG - chr1.4:13626008-13626027 None:intergenic 40.0%
!!! TACAGAGTTTTGTTGGCCAT+GGG + chr1.4:13623724-13623743 MS.gene32361:intron 40.0%
AAATCAGGACTCAAGCGATG+AGG + chr1.4:13623760-13623779 MS.gene32361:CDS 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr1.4:13624866-13624885 MS.gene32361:intron 45.0%
AAGTGAAGGAACAATCTCCG+GGG + chr1.4:13626699-13626718 MS.gene32361:CDS 45.0%
ACCGGCAATGTTGTATGGTA+CGG - chr1.4:13625266-13625285 None:intergenic 45.0%
AGAGTGAGTTACCTTCAGGT+TGG + chr1.4:13627247-13627266 MS.gene32361:intron 45.0%
AGCAAACACTCACCTTTGAG+AGG - chr1.4:13624788-13624807 None:intergenic 45.0%
AGTCGAAGGAGGAGTTAAAC+GGG - chr1.4:13625606-13625625 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG - chr1.4:13625375-13625394 None:intergenic 45.0%
ATTAGTCCGGTAGTGACAAG+AGG + chr1.4:13626973-13626992 MS.gene32361:intron 45.0%
CAAACTGCTTTGTCCCATGA+TGG + chr1.4:13627299-13627318 MS.gene32361:CDS 45.0%
CAAGGCATGTGCAATAGGTA+AGG + chr1.4:13626892-13626911 MS.gene32361:intron 45.0%
CAGCAATAACTCCTCCTTGA+AGG - chr1.4:13623222-13623241 None:intergenic 45.0%
CATCATTAGAGAGAGAGTGG+GGG - chr1.4:13625137-13625156 None:intergenic 45.0%
CATGGCCAACAAAACTCTGT+AGG - chr1.4:13623725-13623744 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG - chr1.4:13625218-13625237 None:intergenic 45.0%
CGCTTACTTTACTCTCGTGT+TGG + chr1.4:13625221-13625240 MS.gene32361:intron 45.0%
CGGTTATGGAATGTTCACAC+TGG + chr1.4:13623902-13623921 MS.gene32361:CDS 45.0%
CTAGCAGATATCACAAGTGC+TGG - chr1.4:13623786-13623805 None:intergenic 45.0%
CTCTACCACCACTTTGATTG+TGG + chr1.4:13623326-13623345 MS.gene32361:intron 45.0%
CTTATCGCACAAAACACCTG+AGG + chr1.4:13625333-13625352 MS.gene32361:intron 45.0%
CTTGTGGGAACCAAAAGTGA+AGG + chr1.4:13626685-13626704 MS.gene32361:CDS 45.0%
GAAGAGTAGATCAAATGGCG+GGG - chr1.4:13625030-13625049 None:intergenic 45.0%
GACAAAGCAGTTTGCCTGAT+TGG - chr1.4:13627293-13627312 None:intergenic 45.0%
GAGTCGAAGGAGGAGTTAAA+CGG - chr1.4:13625607-13625626 None:intergenic 45.0%
GATATGGTCTATGAAGGGTG+AGG + chr1.4:13624162-13624181 MS.gene32361:intron 45.0%
GCTAAGAGTGAGTTACCTTC+AGG + chr1.4:13627243-13627262 MS.gene32361:intron 45.0%
GGGGGAATTTATCCTCTCAA+AGG + chr1.4:13624773-13624792 MS.gene32361:CDS 45.0%
GGGTCCGTAGTACAAAATGA+CGG - chr1.4:13625418-13625437 None:intergenic 45.0%
GGTTTGGACATGTAGAGAGA+AGG - chr1.4:13625072-13625091 None:intergenic 45.0%
GTCGGCTGCTATTATTCCAT+TGG + chr1.4:13624198-13624217 MS.gene32361:intron 45.0%
GTTAGACACGGAAGAGAGTA+GGG - chr1.4:13623282-13623301 None:intergenic 45.0%
TAAGATTGCCAGTTGTGGCA+TGG + chr1.4:13624126-13624145 MS.gene32361:CDS 45.0%
TAAGGTTGACCAGGATGAGT+CGG + chr1.4:13623877-13623896 MS.gene32361:intron 45.0%
TAGTTTGGGAACTGAACCAG+TGG + chr1.4:13622932-13622951 MS.gene32361:CDS 45.0%
TCCGTACCATACAACATTGC+CGG + chr1.4:13625262-13625281 MS.gene32361:intron 45.0%
TGGCGAAAACGTTGAAGTAG+CGG - chr1.4:13623061-13623080 None:intergenic 45.0%
TGTTAGACACGGAAGAGAGT+AGG - chr1.4:13623283-13623302 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG - chr1.4:13625258-13625277 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG - chr1.4:13625366-13625385 None:intergenic 45.0%
TTGAAATGGAGAAGAGCCTC+AGG - chr1.4:13625352-13625371 None:intergenic 45.0%
TTGAGTATGCACCAACCTGA+AGG - chr1.4:13627261-13627280 None:intergenic 45.0%
! AGAGATTTTGTGGAAAGCCC+TGG - chr1.4:13625869-13625888 None:intergenic 45.0%
! GAATTCAAGTTACCGACCAC+TGG - chr1.4:13622951-13622970 None:intergenic 45.0%
! GAGAAAGTTGAGGCATTAGG+TGG + chr1.4:13626562-13626581 MS.gene32361:intron 45.0%
! GCAGATGATGTAGTCTTGCT+TGG - chr1.4:13625631-13625650 None:intergenic 45.0%
! GTTGGAACGTGGTTCAAGTT+TGG + chr1.4:13626258-13626277 MS.gene32361:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG - chr1.4:13625257-13625276 None:intergenic 45.0%
! TTCAACGTTTTCGCCACAGT+TGG + chr1.4:13623065-13623084 MS.gene32361:CDS 45.0%
! TTGATATTTGCTGGAGCTGG+AGG + chr1.4:13623935-13623954 MS.gene32361:CDS 45.0%
!! CACTTTGGTGCTGAGTACAT+GGG + chr1.4:13626384-13626403 MS.gene32361:intron 45.0%
!! TACATCTCGGTGCTAACTCT+TGG + chr1.4:13625659-13625678 MS.gene32361:intron 45.0%
!! TAGTTCTAACTAACCTCCCC+CGG - chr1.4:13626719-13626738 None:intergenic 45.0%
!! TCACTTTGGTGCTGAGTACA+TGG + chr1.4:13626383-13626402 MS.gene32361:intron 45.0%
!!! ACAGAGTTTTGTTGGCCATG+GGG + chr1.4:13623725-13623744 MS.gene32361:intron 45.0%
!!! CTACAGAGTTTTGTTGGCCA+TGG + chr1.4:13623723-13623742 MS.gene32361:intron 45.0%
AACGGCAAGTAGACTGACAC+TGG - chr1.4:13624815-13624834 None:intergenic 50.0%
AAGCCCCCTCATACATATCC+TGG + chr1.4:13625806-13625825 MS.gene32361:intron 50.0%
AAGGACTTAGGGTTGACCCT+TGG + chr1.4:13625722-13625741 MS.gene32361:intron 50.0%
ACGATGGAACAATATGGCGC+TGG + chr1.4:13627433-13627452 MS.gene32361:CDS 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr1.4:13624867-13624886 MS.gene32361:intron 50.0%
AGCTGGGCATGCAATACCAA+TGG + chr1.4:13623474-13623493 MS.gene32361:CDS 50.0%
AGGATGTTGCGTTGGATGAG+TGG - chr1.4:13625190-13625209 None:intergenic 50.0%
AGTGAAGGAACAATCTCCGG+GGG + chr1.4:13626700-13626719 MS.gene32361:CDS 50.0%
AGTGTCAGTCTACTTGCCGT+TGG + chr1.4:13624814-13624833 MS.gene32361:intron 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr1.4:13624865-13624884 MS.gene32361:intron 50.0%
CCGCCTGAGTAGAAACAAGA+CGG - chr1.4:13625542-13625561 None:intergenic 50.0%
CGATGGAACAATATGGCGCT+GGG + chr1.4:13627434-13627453 MS.gene32361:CDS 50.0%
CTACTTACTTCGACGCGTGA+TGG - chr1.4:13625968-13625987 None:intergenic 50.0%
CTGGGCATGCAATACCAATG+GGG + chr1.4:13623476-13623495 MS.gene32361:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1.4:13624871-13624890 MS.gene32361:intron 50.0%
GAAAGCCCTGGAGAAGAAAG+GGG - chr1.4:13625857-13625876 None:intergenic 50.0%
GAGAAGTGGGTCTACCTTAG+AGG - chr1.4:13625491-13625510 None:intergenic 50.0%
GCTGCGACGATGGAACAATA+TGG + chr1.4:13627427-13627446 MS.gene32361:CDS 50.0%
GCTGGGCATGCAATACCAAT+GGG + chr1.4:13623475-13623494 MS.gene32361:CDS 50.0%
GGAAAGCCCTGGAGAAGAAA+GGG - chr1.4:13625858-13625877 None:intergenic 50.0%
GGCGAAAACGTTGAAGTAGC+GGG - chr1.4:13623060-13623079 None:intergenic 50.0%
GTCAGACCGGCAATGTTGTA+TGG - chr1.4:13625271-13625290 None:intergenic 50.0%
TAAACGGGAGGCTAGAGACT+TGG - chr1.4:13625591-13625610 None:intergenic 50.0%
TCTTCTTACCACGGCGTCTA+CGG + chr1.4:13625045-13625064 MS.gene32361:intron 50.0%
TGGAAAGCCCTGGAGAAGAA+AGG - chr1.4:13625859-13625878 None:intergenic 50.0%
TTGACCAGGATGAGTCGGTT+CGG + chr1.4:13623882-13623901 MS.gene32361:intron 50.0%
TTGGGAACTGAACCAGTGGT+CGG + chr1.4:13622936-13622955 MS.gene32361:CDS 50.0%
TTTGGATCTGCCAGGCAACA+GGG + chr1.4:13627112-13627131 MS.gene32361:intron 50.0%
! AACGTTTTCGCCACAGTTGG+TGG + chr1.4:13623068-13623087 MS.gene32361:CDS 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG - chr1.4:13625210-13625229 None:intergenic 50.0%
! AGGCAAGCCTTAGAAGCGTA+CGG - chr1.4:13625568-13625587 None:intergenic 50.0%
! AGTCTTGCTTGGTGAGTCGA+AGG - chr1.4:13625620-13625639 None:intergenic 50.0%
! ATAACCGAACCGACTCATCC+TGG - chr1.4:13623889-13623908 None:intergenic 50.0%
! CTGCTTTGTCCCATGATGGA+AGG + chr1.4:13627303-13627322 MS.gene32361:CDS 50.0%
! TTTTGGATCTGCCAGGCAAC+AGG + chr1.4:13627111-13627130 MS.gene32361:intron 50.0%
!! AGGATGAGTCGGTTCGGTTA+TGG + chr1.4:13623888-13623907 MS.gene32361:intron 50.0%
!! CCGTCTTGTTTCTACTCAGG+CGG + chr1.4:13625539-13625558 MS.gene32361:intron 50.0%
!! GGGAGAAGGGTGTCATTTCA+AGG - chr1.4:13623704-13623723 None:intergenic 50.0%
AACCCGATTGCCACCAACTG+TGG - chr1.4:13623081-13623100 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1.4:13624879-13624898 MS.gene32361:intron 55.0%
ACTAGTGTGAGGACGCAGGA+TGG - chr1.4:13625784-13625803 None:intergenic 55.0%
AGTCACCAATCGCCTCCAAG+AGG + chr1.4:13622992-13623011 MS.gene32361:CDS 55.0%
ATAGAGGACGCTTGCCCTCT+TGG - chr1.4:13623010-13623029 None:intergenic 55.0%
ATCTGCCAGGCAACAGGGAA+GGG + chr1.4:13627117-13627136 MS.gene32361:intron 55.0%
ATCTTCCCTTCCCTGTTGCC+TGG - chr1.4:13627125-13627144 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1.4:13624880-13624899 None:intergenic 55.0%
CCTCACCCCTTTCTTCTCCA+GGG + chr1.4:13625849-13625868 MS.gene32361:intron 55.0%
CGAAGGAGGAGTTAAACGGG+AGG - chr1.4:13625603-13625622 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1.4:13624873-13624892 None:intergenic 55.0%
CGGAGATGAGGATGTTGCGT+TGG - chr1.4:13625198-13625217 None:intergenic 55.0%
CTAGTGTGAGGACGCAGGAT+GGG - chr1.4:13625783-13625802 None:intergenic 55.0%
CTATCGGACAGCAGTCAGAC+CGG - chr1.4:13625284-13625303 None:intergenic 55.0%
CTTCTTACCACGGCGTCTAC+GGG + chr1.4:13625046-13625065 MS.gene32361:intron 55.0%
GCGGAAACCGTACGCTTCTA+AGG + chr1.4:13625558-13625577 MS.gene32361:intron 55.0%
GCGGGGAGTCAGGTTAAAAG+AGG - chr1.4:13625013-13625032 None:intergenic 55.0%
GTCACCAATCGCCTCCAAGA+GGG + chr1.4:13622993-13623012 MS.gene32361:CDS 55.0%
TAGTGTGAGGACGCAGGATG+GGG - chr1.4:13625782-13625801 None:intergenic 55.0%
TATGCCTGGGAGGTCGACTA+TGG - chr1.4:13625998-13626017 None:intergenic 55.0%
TCCTCACCCCTTTCTTCTCC+AGG + chr1.4:13625848-13625867 MS.gene32361:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1.4:13624879-13624898 None:intergenic 55.0%
TTCGACTAGTGTGAGGACGC+AGG - chr1.4:13625788-13625807 None:intergenic 55.0%
! AGATCAAATGGCGGGGAGTC+AGG - chr1.4:13625023-13625042 None:intergenic 55.0%
! CGTGATGGAGCGATATCGGA+CGG - chr1.4:13625953-13625972 None:intergenic 55.0%
! CTTGCTTGGTGAGTCGAAGG+AGG - chr1.4:13625617-13625636 None:intergenic 55.0%
! GACGCGTGATGGAGCGATAT+CGG - chr1.4:13625957-13625976 None:intergenic 55.0%
!! TCGCCACAGTTGGTGGCAAT+CGG + chr1.4:13623075-13623094 MS.gene32361:CDS 55.0%
ACGGGAGGCTAGAGACTTGG+AGG - chr1.4:13625588-13625607 None:intergenic 60.0%
ACTCCTCCAGCCACAGCAAG+CGG - chr1.4:13623504-13623523 None:intergenic 60.0%
AGGACGCAGGATGGGGATAC+CGG - chr1.4:13625775-13625794 None:intergenic 60.0%
AGGGGGCTTCGACTAGTGTG+AGG - chr1.4:13625795-13625814 None:intergenic 60.0%
CCCTGGAGAAGAAAGGGGTG+AGG - chr1.4:13625852-13625871 None:intergenic 60.0%
CTTGCCCTCTTGGAGGCGAT+TGG - chr1.4:13623000-13623019 None:intergenic 60.0%
GAAGGAACAATCTCCGGGGG+AGG + chr1.4:13626703-13626722 MS.gene32361:CDS 60.0%
GATCTGCCAGGCAACAGGGA+AGG + chr1.4:13627116-13627135 MS.gene32361:intron 60.0%
GCTGTGGCTGGAGGAGTCAA+TGG + chr1.4:13623507-13623526 MS.gene32361:CDS 60.0%
GCTTCCATAGTCGACCTCCC+AGG + chr1.4:13625991-13626010 MS.gene32361:intron 60.0%
!! CGCCACAGTTGGTGGCAATC+GGG + chr1.4:13623076-13623095 MS.gene32361:CDS 60.0%
CACAGCAAGCGGAGCCCCAT+TGG - chr1.4:13623493-13623512 None:intergenic 65.0%
GAGGACGCTTGCCCTCTTGG+AGG - chr1.4:13623007-13623026 None:intergenic 65.0%
! CAATGGGGCTCCGCTTGCTG+TGG + chr1.4:13623491-13623510 MS.gene32361:CDS 65.0%
GAGAAGGCCCGTAGACGCCG+TGG - chr1.4:13625056-13625075 None:intergenic 70.0%
!! GCTCCGCTTGCTGTGGCTGG+AGG + chr1.4:13623498-13623517 MS.gene32361:CDS 70.0%
!! GGGGCTCCGCTTGCTGTGGC+TGG + chr1.4:13623495-13623514 MS.gene32361:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 13622921 13627479 13622921 ID=MS.gene32361
chr1.4 mRNA 13622921 13627479 13622921 ID=MS.gene32361.t1;Parent=MS.gene32361
chr1.4 exon 13622921 13623097 13622921 ID=MS.gene32361.t1.exon1;Parent=MS.gene32361.t1
chr1.4 CDS 13622921 13623097 13622921 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13623202 13623267 13623202 ID=MS.gene32361.t1.exon2;Parent=MS.gene32361.t1
chr1.4 CDS 13623202 13623267 13623202 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13623450 13623572 13623450 ID=MS.gene32361.t1.exon3;Parent=MS.gene32361.t1
chr1.4 CDS 13623450 13623572 13623450 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13623729 13623809 13623729 ID=MS.gene32361.t1.exon4;Parent=MS.gene32361.t1
chr1.4 CDS 13623729 13623809 13623729 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13623890 13623982 13623890 ID=MS.gene32361.t1.exon5;Parent=MS.gene32361.t1
chr1.4 CDS 13623890 13623982 13623890 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13624103 13624178 13624103 ID=MS.gene32361.t1.exon6;Parent=MS.gene32361.t1
chr1.4 CDS 13624103 13624178 13624103 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13624566 13624645 13624566 ID=MS.gene32361.t1.exon7;Parent=MS.gene32361.t1
chr1.4 CDS 13624566 13624645 13624566 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13624723 13624794 13624723 ID=MS.gene32361.t1.exon8;Parent=MS.gene32361.t1
chr1.4 CDS 13624723 13624794 13624723 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13626665 13626724 13626665 ID=MS.gene32361.t1.exon9;Parent=MS.gene32361.t1
chr1.4 CDS 13626665 13626724 13626665 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13626812 13626908 13626812 ID=MS.gene32361.t1.exon10;Parent=MS.gene32361.t1
chr1.4 CDS 13626812 13626908 13626812 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13627126 13627189 13627126 ID=MS.gene32361.t1.exon11;Parent=MS.gene32361.t1
chr1.4 CDS 13627126 13627189 13627126 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13627265 13627324 13627265 ID=MS.gene32361.t1.exon12;Parent=MS.gene32361.t1
chr1.4 CDS 13627265 13627324 13627265 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
chr1.4 exon 13627413 13627479 13627413 ID=MS.gene32361.t1.exon13;Parent=MS.gene32361.t1
chr1.4 CDS 13627413 13627479 13627413 ID=cds.MS.gene32361.t1;Parent=MS.gene32361.t1
Gene Sequence

>MS.gene32361

ATGAAGTTGTTTAGTTTGGGAACTGAACCAGTGGTCGGTAACTTGAATTCTTCAAGGAAGAAAGAGTATAGAGTCACCAATCGCCTCCAAGAGGGCAAGCGTCCTCTATATGCTGTTGTTTTCAACTTCATCGACTCCCGCTACTTCAACGTTTTCGCCACAGTTGGTGGCAATCGGGTTCTCTTCCTTTTTCTATTTTTTTCCATTCAATTCTAACATAACCTTTTTTCTTTGCACTCAAAAGTTTCAATCTTTAACTCTTTTTCTTCTTCGTTTATTAGGTTACTATTTATCAATGCCTTCAAGGAGGAGTTATTGCTGTATTGCAGTCTTTTGTAGATGATGATGTAAGGCAACTCCCTACTCTCTTCCGTGTCTAACATTTTGCATTTTTGTTTATTTGGTCTCTACCACCACTTTGATTGTGGTGTTTATTATTATTGTTGTTGTTGTTGTTGTGTTGTTATTATTATTATTAAAAAAAAGGAACAAAGTGGGTCAATTTTAATATATTTTTTATGTTGACCAGAAGGATGAATCTTTTTATACAGTAAGCTGGGCATGCAATACCAATGGGGCTCCGCTTGCTGTGGCTGGAGGAGTCAATGGTATAATTCGAGTCATTAATGGTAGCGATGAGAAGTTACACAAGGTATTTCTGCAGTAACAATAATTTGTTAGTTTGGAGTTTTGTGGTAACTATTGCTAGCTAAATGCCTTAAATTAATTTGTTTTGATTCAATAATATTTAAAGGTATTAGTAATGTAATTCTCATTGCTCCTTGAAATGACACCCTTCTCCCTACAGAGTTTTGTTGGCCATGGGGACTCCATAAATGAAATCAGGACTCAAGCGATGAGGCCAGCACTTGTGATATCTGCTAGCAAAGTAAATAACACCTCTCTCTGTTATTTCACTTACTAAAGAAGCATTTATCTTTTCATACAATAACTTATAAGGTTGACCAGGATGAGTCGGTTCGGTTATGGAATGTTCACACTGGAGTATGTGTTTTGATATTTGCTGGAGCTGGAGGACACCGTAATGAAGTCTTAAGTATTGTGAGTGTATTATGGATCTAATATATCACCCCTTTGACTTGATCAATTACCAAATTATGGTAATAATCAAAGTTTTGACATTTGGTTACTAGCCCGAGTAACTTCTATTTCTTACTGTAGGATTTTCATCCATCAGATATATTTAAGATTGCCAGTTGTGGCATGGATAATACTGTTAAGATATGGTCTATGAAGGGTGAGGCGTTTAGTTTTATGTCGGCTGCTATTATTCCATTGGTTGCTTTTGTTTATCCTGATATATCTTATAGTTGAGTTTCGCCGTATCTCCCATAATGTAATTGATGGTATCCGTACCATATAGAAAAGATGAAAGCTATACCAGGAAAAGTCACATGATTTTCCCCCAAAAATATTATGATTGCTTATTTTTTAAACACTATCCAGTTATCACATCCAAAAGTATAAATTTGTAAAATTCGTGCACTCTTACTACCACATAGAGTCAATCTCAAAATTTGTTTTAACTATGAAGGGATACAGATTTTAAATTGACAACAGTGGTAGTGTACCTAATGTATTGTCTTTTTCATTGTAAACCATTGTTACCTTCATTTTATTGCAGATTTCTGGGGCTATGTAGAACAATCATTCACATGGACAGATATCCCTTCTAAGTTTCCCACAAAATATGTGCAGTTTCCTGTAAGTAACAGTTTATTTTAATCACTGAATCACATATATCATGTATCTTGTCTAATAGTTTCTAATTTCATTTTCAGATATTCAATGCTTCAGTTCATACAAATTACGTTGATTGTACTAGATGGTTGGGGGAATTTATCCTCTCAAAGGTGAGTGTTTGCTCATTCCAGTGTCAGTCTACTTGCCGTTGGAAAGAGTTTGATTTTACAACAACAACAACAACGCCTTATCCCACTAAGTGGGGTCGGCTACATGGATCAAATGCCGCCATAATGTTCTATCAAAGACCATATTTGGATCCAACTCATTGACCTCTAAATCTTTTCTAATGGTTTCTCTAATAGTTTTCTTAGGTCTTCCTCTACCTCTTTTAACCTGACTCCCCGCCATTTGATCTACTCTTCTTACCACGGCGTCTACGGGCCTTCTCTCTACATGTCCAAACCATCTAAGCCTATTTTCTACCAACTTTTCTACTATAGGTGCTACCCCCACTCTCTCTCTAATGATGTCATTCCTAATCCTATCATGTCTAGTCTTACCACTCATCCAACGCAACATCCTCATCTCCGCTACGCTTACTTTACTCTCGTGTTGGCTCTTAATCGCCCAACACTCCGTACCATACAACATTGCCGGTCTGACTGCTGTCCGATAGAACTTTCCTTTCAGCTTAAGTGGTACTTTCTTATCGCACAAAACACCTGAGGCTCTTCTCCATTTCAACCACCCAGCTTGAATACGATGATGTACATCAGCTTCTATTTCTCCGTCATTTTGTACTACGGACCCAAGATATCTAAACCGTGTAACTTGGGGTATGATATGATCTCCAACTTTCACCTCTAAGGTAGACCCACTTCTCCTTTTACTGAAGTTGCATTCCATATATTCCGTCTTGTTTCTACTCAGGCGGAAACCGTACGCTTCTAAGGCTTGCCTCCAAGTCTCTAGCCTCCCGTTTAACTCCTCCTTCGACTCACCAAGCAAGACTACATCATCTGCAAAAAGCATACATCTCGGTGCTAACTCTTGGATGTGTTCCGTCAGTACATCCAAAACTAAAGTAAAAAGATAAGGACTTAGGGTTGACCCTTGGTGCAGTCCTATTGTTATGGGAAAATCTCCGGTATCCCCATCCTGCGTCCTCACACTAGTCGAAGCCCCCTCATACATATCCTGGATAGCTCTAATATAGGCAATCCTCACCCCTTTCTTCTCCAGGGCTTTCCACAAAATCTCTCTAGGTACTCTATCATACGCCTTCTCCAAATCAATGAAAACTAAGTGCAAGTCTTTTTTATCCGTCCGATATCGCTCCATCACGCGTCGAAGTAAGTAGATCGCTTCCATAGTCGACCTCCCAGGCATAAAACCAAATTGGTTATCCGTAACGTGAGTCTCTTTTCTTAGTCTTCGCTCAATTACCCTTTCCCATAACTTCATGGTATGACTCATTAGCTTAATTCCCCTATAATTCGCGCAATCTTCTCCCCCTTGTTCCTAGCTGAAATTTACATGATTCCCATTACTGTTTACACAGTCTTTATGATGCCAAATAGAAACAGTAAAAGGAATAATGAAAACAAGGAATATTGGATTTCAATTAGAAGTTGGAACGTGGTTCAAGTTTGGAAATGGTATGCTTCAATGGTATCAGCCTCATGAATCAGTTATAAATCAGCAACTACCAATGCTATTATTAGACAGAAAACAAATTTTGACCATTTTTTGGTATCACTTTGGTGCTGAGTACATGGGTATTATTGGAACTTTATTGGACTTGGTAGACATGCAAATTATTTGATTCAAATTCATGTATCTATATATTTTCCTTTTCATTTGGTTTAAGCATTCTTTCTTTTCCTCTGCAACCCTTCGATAAAATAATTAAAAGTAATTCAATAGTTGGAAGAGAGAAAGTTGAGGCATTAGGTGGTCCATTTTAGTGATAACTTGGCCATGAGTCAGTGATTTGAATATTCTCTGATTTCACGAAGTTATACGTTATGTTTCCAGAGTGTTGACCATGAAATTGTCTTGTGGGAACCAAAAGTGAAGGAACAATCTCCGGGGGAGGTTAGTTAGAACTATCATCTGTTTATTAACATTTTTATGTATGAAGTTTTGTTTTAGCTTCAGCCTTTTCATTGTTTGGGTGTTCAGGGCGCAGTCGACATACTTCAGAAATACCCTGTTCCTGAATGTGATATATGGTTCATCAAATTTTCTTGTGATTTCCATTTCAAGGCATGTGCAATAGGTAAGGGTAACTAATTGCAAAAATTTCATATTTTCAATTTTTCTTCTTCTTTCTAACGTACAGCATTAGTCCGGTAGTGACAAGAGGTATATGCATAGCACATTTTGTTCATTGCAGATGTGTAACAATTCTAATTAATCTTTTGTTAGCACGTTTTGAATTTTGTGCTTTTACTGTGTTCTTATTCCGTTTTTTCTTTTTCTTTTGGATCTGCCAGGCAACAGGGAAGGGAAGATTTTTCTTTGGGATTTGCAGTCAAGTCCTCCTATTCTTATTGCAAAGTTAGTTTTCTAAATATTCGTGTTATTGGATTTGTATGCGATTAAGTTTTTATGCTAAGAGTGAGTTACCTTCAGGTTGGTGCATACTCAATCAAAATCTCCAATCAGGCAAACTGCTTTGTCCCATGATGGAAGGTGATTTCTTCATATTTTTGGTGACGCTACTCATAAATTTGATGCAGTAATTTTCTTTAATTGTTATCTTCTTTTTGTTATGTTGCAGTACTATTTTATGTTGCTGCGACGATGGAACAATATGGCGCTGGGATGATGCAAACTCCGAAGCTTAA

Protein sequence

>MS.gene32361.t1

MKLFSLGTEPVVGNLNSSRKKEYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTIYQCLQGGVIAVLQSFVDDDKDESFYTVSWACNTNGAPLAVAGGVNGIIRVINGSDEKLHKSFVGHGDSINEIRTQAMRPALVISASKDESVRLWNVHTGVCVLIFAGAGGHRNEVLSIDFHPSDIFKIASCGMDNTVKIWSMKDFWGYVEQSFTWTDIPSKFPTKYVQFPIFNASVHTNYVDCTRWLGEFILSKSVDHEIVLWEPKVKEQSPGEGAVDILQKYPVPECDIWFIKFSCDFHFKACAIGNREGKIFLWDLQSSPPILIAKLVHTQSKSPIRQTALSHDGSTILCCCDDGTIWRWDDANSEA