AlfalfaGEDB | MS.gene85663

M. sativa cultivar XinJiangDaYe / MS.gene85663

KEGG: K11507
GO: GO:0000776 GO:0005575 GO:0006996 GO:0008150 GO:0009987 GO:0016043 GO:0022607 GO:0034508 GO:0034622 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0051276 GO:0065003 GO:0065004 GO:0071824 GO:0071840 GO:0099080 GO:0110165
PFAM: PF09496.13

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85663.t1	XP_013461918.1	94.9	311	11	1	31	336	30	340	4.60E-165	590.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85663.t1	A0A072V3M1	94.9	311	11	1	31	336	30	340	3.3e-165	590.9

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene85663	0.835254	1.87E-56	-1.69E-46
MS.gene049230	MS.gene85663	0.801531	8.62E-49	-1.69E-46
MS.gene049254	MS.gene85663	0.80743	5.07E-50	-1.69E-46
MS.gene049343	MS.gene85663	0.832475	9.26E-56	-1.69E-46
MS.gene049404	MS.gene85663	0.807346	5.29E-50	-1.69E-46
MS.gene049424	MS.gene85663	0.810835	9.46E-51	-1.69E-46
MS.gene049435	MS.gene85663	0.806598	7.61E-50	-1.69E-46
MS.gene049653	MS.gene85663	0.805821	1.11E-49	-1.69E-46
MS.gene049669	MS.gene85663	0.818023	2.43E-52	-1.69E-46
MS.gene049983	MS.gene85663	0.802708	4.94E-49	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85663.t1	MTR_3g108805	94.551	312	12	1	31	337	30	341	0.0	618
MS.gene85663.t1	MTR_3g108805	93.117	247	12	1	31	272	30	276	6.93e-171	479

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene85663.t1	AT5G10710	61.538	299	100	5	46	337	1	291	1.41e-128	373
MS.gene85663.t1	AT5G10710	56.856	299	100	6	46	337	1	277	5.69e-112	330
MS.gene85663.t1	AT5G10710	66.234	231	69	4	46	269	1	229	2.42e-106	313

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Find 73 sgRNAs with CRISPR-Local

Find 421 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAACTGTGTGCTCA+AGG	0.553374	3.3:+88920066	None:intergenic
AAATGAGATCTGTGTATCGA+AGG	0.604667	3.3:+88918809	None:intergenic
AATTAACAGGGATTCTGACA+AGG	0.606528	3.3:-88923042	MS.gene85663:intron
ACAAACTCGATCATGTGATA+AGG	0.514790	3.3:+88919099	None:intergenic
ACGGACGTATGCACCCATGG+GGG	0.801481	3.3:-88923417	MS.gene85663:CDS
ACTCGATCATGTGATAAGGA+AGG	0.628301	3.3:+88919103	None:intergenic
ACTTACTCTCCAGCACGCAG+TGG	0.705433	3.3:+88920111	None:intergenic
ACTTGCTACAATAAGAGAGC+AGG	0.563333	3.3:-88922323	MS.gene85663:intron
ACTTGGCTGACCGTATTTCT+AGG	0.263651	3.3:-88923134	MS.gene85663:intron
AGAAATGATGAATCTGGGCA+AGG	0.699393	3.3:-88916926	MS.gene85663:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACACTATCTACTGATAAGT+CGG	-	chr3.3:88920903-88920922	MS.gene85663:intron	30.0%
AAGATATAATCGTCAGCAAA+TGG	+	chr3.3:88920288-88920307	None:intergenic	30.0%
AAGTCTGATATGTGTCTTTA+TGG	-	chr3.3:88922159-88922178	MS.gene85663:intron	30.0%
AATGAATGAACAGTAGAAGT+TGG	+	chr3.3:88918023-88918042	None:intergenic	30.0%
AATGCAAACCAATAGAAACA+AGG	+	chr3.3:88920522-88920541	None:intergenic	30.0%
ACATACAAATCATAGCTTGA+AGG	-	chr3.3:88919434-88919453	MS.gene85663:intron	30.0%
ACATACAAATTCCACTAAGT+AGG	-	chr3.3:88919364-88919383	MS.gene85663:intron	30.0%
AGATATAATCGTCAGCAAAT+GGG	+	chr3.3:88920287-88920306	None:intergenic	30.0%
ATCATATGGAACCAAATTAC+AGG	+	chr3.3:88922629-88922648	None:intergenic	30.0%
ATTATTTCCTTAACACTGCT+TGG	+	chr3.3:88919664-88919683	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	88916828	88923647	88916828	ID=MS.gene85663
chr3.3	mRNA	88916828	88923647	88916828	ID=MS.gene85663.t1;Parent=MS.gene85663
chr3.3	exon	88923546	88923647	88923546	ID=MS.gene85663.t1.exon1;Parent=MS.gene85663.t1
chr3.3	CDS	88923546	88923647	88923546	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88923412	88923456	88923412	ID=MS.gene85663.t1.exon2;Parent=MS.gene85663.t1
chr3.3	CDS	88923412	88923456	88923412	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88923275	88923329	88923275	ID=MS.gene85663.t1.exon3;Parent=MS.gene85663.t1
chr3.3	CDS	88923275	88923329	88923275	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88923135	88923183	88923135	ID=MS.gene85663.t1.exon4;Parent=MS.gene85663.t1
chr3.3	CDS	88923135	88923183	88923135	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88922985	88923055	88922985	ID=MS.gene85663.t1.exon5;Parent=MS.gene85663.t1
chr3.3	CDS	88922985	88923055	88922985	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88922324	88922382	88922324	ID=MS.gene85663.t1.exon6;Parent=MS.gene85663.t1
chr3.3	CDS	88922324	88922382	88922324	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88922085	88922177	88922085	ID=MS.gene85663.t1.exon7;Parent=MS.gene85663.t1
chr3.3	CDS	88922085	88922177	88922085	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88920285	88920342	88920285	ID=MS.gene85663.t1.exon8;Parent=MS.gene85663.t1
chr3.3	CDS	88920285	88920342	88920285	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88920016	88920152	88920016	ID=MS.gene85663.t1.exon9;Parent=MS.gene85663.t1
chr3.3	CDS	88920016	88920152	88920016	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88919874	88919930	88919874	ID=MS.gene85663.t1.exon10;Parent=MS.gene85663.t1
chr3.3	CDS	88919874	88919930	88919874	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88919081	88919163	88919081	ID=MS.gene85663.t1.exon11;Parent=MS.gene85663.t1
chr3.3	CDS	88919081	88919163	88919081	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88918647	88918846	88918647	ID=MS.gene85663.t1.exon12;Parent=MS.gene85663.t1
chr3.3	CDS	88918647	88918846	88918647	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88917123	88917182	88917123	ID=MS.gene85663.t1.exon13;Parent=MS.gene85663.t1
chr3.3	CDS	88917123	88917182	88917123	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1
chr3.3	exon	88916828	88916997	88916828	ID=MS.gene85663.t1.exon14;Parent=MS.gene85663.t1
chr3.3	CDS	88916828	88916997	88916828	ID=cds.MS.gene85663.t1;Parent=MS.gene85663.t1

Gene Sequence

>MS.gene85663

ATGCGGAAGAATCTATGCGAAAGAGACTCCGAAGTAATTCCTTTCACTCCGCCGATTATCCCTCTCGCAACAAGGTCCCTTCTTCTCTTCTCTGATCATCATGTATAAAAACCCTAATTCGTATCAATTTCACTACAATAGGTTTATTGTTGTTATTATTCTTAACTGATGATTGTAAAATCATGCCGCAGTTTGAACAATATGCTGGACGGACGTATGCACCCATGGGGGAAGTGGTAATGCTTCTCATCATTTCAATCAATATCTCTAACACTATTTTCATTTCTTCAATTCATGTTTCTATTTTCTTTTTCTCAGAATTTTATGCAGCAGCAAGATGATGATAGTCGCTTGGATATTACACGAGCTAAATGTAAGTCTATAATCTCATTAGTACTGTTTCTTCCATTTTCCTGATACAAACAAATATATATATATATATAATTCTATTATTTTAATCACAGTTGGAAGTTTGCTTAAAAGACATGAAAACTTGGCTGACCGTATTTCTAGGTAACTTTCTCCTTCACTAATTGTTAATATGTTATATGCTGCATTAACATATACACAATTTCTTCTTTTTAATTAACAGGGATTCTGACAAGGTAATATTTGAGCGTCTACTCAAAGAGTTTGAATCTGCACGAGCTTCTCAAACACAAGGTTGATTCCTGTTATATCCTCTGTTATCCTTTCTATTTTTCAAATTATTATTTCAGTATTACAATTTATTAAGTTTATGCGTGAATGCATATATCCATACAAAGTGATATCAGTTTCATCTCTAAATAAAATTGACATCAAATTTGGACTTGGTTTGATACACAGTAACCTGTAAAGCATAGAAAACAACTAGCAAGTAGTGTTCTTCAGTGCCTTGTGTTATTTGGTGTAGCCTGGCTTAGTCATCTATTGGTTTAAATAGTTTGTTTAAAAGCCTTAATGTTGCACTATTTTTATACCGGCAATAATTGAACTGGACCCAAAATAAAATAAAAGATATTTTTGCTGTTGATGTTAGCTGATCATGTAGAATAAATAACAGCAATATTTTTTGCATATGGAATGACAACAGAGAGTTGAACAAAGAAGCAGCATTGTATAATCTAAAACATTTTAACAGCGTGGATTCTTAAGATGTAAATCTTGGTCATTGTATGAGATAATACTTTTGTAACATCTTAAATGCTGACCAACTTCTACTGTTCATTCATTTCCTTAGAGATATCCTGAAAAATGCTTCTAAACCTCTTTTTTTTTTGTAGAGATATATTTAGATGGGGAACAGTGGAATGATGGTCTACTTGCTACAATAAGAGAGCAGGTATGGTTATTTGATTGTTATCTTCCTTTTTACTTATGTTCTGGTATTTTTCCTTGATGTTCTTCATAGTAATCACTTGTTTGAATTTCATTGTTGATGTTCATGATTATGATAACGTTTGACCCATTCAACTGCGATCTTGTCAGGTGCATATGGAGGCAGAGAGAAAAGCATTGTCTAAAGATGCTGACGTATTAACAAGCCATCAGGAAAAAGTTACATATAAAACTGGAAACAAGGTAAATGTTATATGATATTACATCCCTGAATAACTTTTCATGGTAAAACACAATAGCTTGCATATTTAAGTCATTTGGACTAGAGAGTAGCAATTTTATGTACCTATAAAAAACACGGGTAAGATAACACGCTAAAGAACTAAACACATGGATTCAAATTTTTGTACATGAGAAATACAAAATTCTGCAACAGTTTAGTTAATATTGTCGATAAGACTTAGATGAAAGAGATTGAGAATGTGAAAAGAGTAGGAGATAGGATATTGGGATCATACCCCTAAACTTTATAGTAGAGCGAAAAATCTGTGATGTTACCAATGCATATGGACAAGTAGGGAATGAAGAGCAATACAAGGTAAAGTTTTGAGTATGGGGGGTGTGGCAACGAGGATATAAACACCAACAACAACAACAACCAAGCCTTATCCCGCTAAGTGGGGTCGGCTACATGGATCAAATGACGCCATAGTTTTCTATCAAAAACCAACGAGGATATAAACACCGAGGGTACAAATATTTTAGACTTCGCTAATAGTTTTGATTTTATTATAGGTAACACTAAAAACGAGAGGTACATCTTTTAAAATACAACAGTGGTGTGAGATGCTCCCAAGTCCCAACTTGATATCTTTTTGATAAGGAAATTGAATAGAAAATTTACATGAATTGCAAAGTCATGTCCAGAGAGAGTCTAGCTACCCAGCAAAGTACTGGTTATGGACATGCATGTTGAGAGAAAAATAAAATAAAATAGTCAAGTCAGAAATCCTGGGATAAGATGATGGGTTTTGAAGATCCCCATAACTCTAGTGTGCACAAAAGGTCGACACCGAGCCATTATCTTTTTCATTTTAATTTTAGATATTCTTACTTAACATTTCGAATTGATGAGACACTGCCTTGGTGCATGTTATTTAGGTAGAGAGTTGAGAATACATAAATGGTAAGTGAGATATGGACACAAGACTTTAAAACATACAAATTCCACTAAGTAGGACTGTAAGAGACAACAATTGGAGTGTAAAATACTGATTTAGCAAGTGACATACAAATCATAGCTTGAAGGTTGAAATTGGAGAATATATACCTCAAGTCTCATATTGTAAGTAACATGTGACCATCATACAAAGTGACAACAAGATAGAGGGAGATGTAAATTACAGGATGCAAGCAGTGTTTTTTTTTTCTTCGGAGAAGTTGTAGAGAGAATCGAACAACCATCAGCTTGGTGTTGATTGGTATAACCACTCGGCCAAATAAATTTGACGATCCAAGCAGTGTTAAGGAAATAATAAAATATTGGTGTGTGGAGCAGACATTGATGTGGTGCTGCAGGCCTAGGGTGGACACATGGTAGATTTAATAGGCATCCTATGGTAGCAGACATTGATGGGCCTCCTTGGCGGCAATTATTGCCAAGGAGGGTTAACAAAATGGTGGATACTGGATGGTCCAATAGCTAGAGGTAAAAATCAATAAAGATTATAGTCCAAACCATCAAGTGAGATTTAGAGGTAAACAGTGTTTGAATTGAATACAAAATAGGTACTGATGGTGACATTTGATGTATATCGCTGAACCCACTTAATGGAATAAGGCTTGGTTGCAGGGTTTGTTGTGTCCCCTCCCAAAAAAAATCATTGGTTTCCGTACACGTTCAATGCTATACTTGGATTAGCTGTTTGTGTATTAACTTCACAATCATATAATCTTTTTAATATTTTTTATGTATTTGGGAGCAGATAATTTGCTGTTTGGAAGGAGCAAGAATTGGCATACAGTATGAGACATCTTTTGCTGGTAATTTGGAACTAAATTGTTCATGACTTACTTAGCTAGTTTATGAGCTGACATTATGGAGGCTGGATCTTTCTCTAGATGGTCCTTCCGTTTCCCATTTGCTGACGATTATATCTTTTCATTTATTTCTAGGTGAAATTTGTGAGTTTTACCACTGCGTGCTGGAGAGTAAGTCATTTCTTGAAAAGATGACTGTCCTTGAGCACACAGTTCCATTTTTCTTGCCAATACGTGAAACAGAAAATGATCTTCTTTCATCCAATGCAATGGTAAAATCAGTTATATATGATGTTGTCATGGACCATGTGTATTTGAACATTTTTCTAAGCCTTGTTTCTATTGGTTTGCATTCAGAAATTCATTGATCATGTTGGAGATCTATTGCAAGCATACGTGGATAGACGGGAACAGGTAGACTGCCTATGCATGTAATCTTTAGAGAATGTTGAATATGTTCATTTTGCGGAATACTGATATTAGGTCATCATGATCCTTATGGACATGTATGTTGCATACGGAGCAAAAGTTTACACTAAAACAAGCATATGCATGTTTTATTGTTCGAAAAAATAATGTCAGAGCATGTTAAAGCTAGTATCTTTGGACTAGTTTACCTGTAGCCATATTTACTTAGTGAAATAGATTTGCATTGTAGCATTTAATAATTTTCATTTTTACCACAACTCATATCCTTGTTAGTTTAAATTCTCAGAACACTATCTACTGATAAGTCGGTTATATTGTTCATACATTTTTTTTCTTCCCATTTTTTCTAAACAATTGTCAAAACATGTATTCTGGGTTGCAGTTATCTGACTGTGCCATTTAAGAACACCAATTGTGGAAGATATTAAACTTGGTGTCTTAGTTATCTTGGTATGTAAAATATTAGATGGTATGATCATCTTGATTATGTTTCTTTTATTTTGGCAAACCTTCACTTACGCTCCTAACTCCCAAACAAAGCCTAAACATTCTATTCTATGTTAAAGGTTGGGGCAGGCATAGGAACTTTACTGTCTCCCTCTTTTCATGTATGCTTGTAAATATCTAGTCTGTCTATTGTTCTGTTACAAATTAACATTTAACTTTTTGCCTCCTACAAATGTAGACTTATAAAGGAACTTTATGGAAATCAAATCGGAGAGCTGTATCATAGCCTTCCTTATCACATGATCGAGTTTGTATTAGATGATTTTGACTGGTTAGTGGGTTAAAGTGATTTTTCTCTTCGATTTTGTAACTGTATTTTTAACCTTTTCAAATTTTCTTCCCCCTTTCAAATGTTAACACGGGAAATCATTGGTACAATATACTCTTTCTTATTCTCTTGACTCTTTTCTCTCCTTTTATTTTCTTTCACTTTCCTACATTTTCCCTTGTTTTCAAACCTTGTAATATTGATCAAGAAGTCTTTTTTTTTTTTTTTTTTTTGCAGCAAAGTGACAGTCAGCCTTCGATACACAGATCTCATTTCGGTGCTTCCAACTCGAATCTCAGTGCTAGCCTGGCCAATGTCGAAGATAAATTCTACTCCAATTTTCAACATGATGGAAGATGGAATCTCAGGAAGTCATCCTGCACCAGTTCGACTATCCTACGCAGAAGACGCCTTACGAACCATGAGTCTACCAGAAGGTGAAAACTATATTACTTCGGTTAAATTATAAGAGAACGATGTCTTATTTTCGGCAACATTTCTTGTCTGAATGTGATCGTGTGTGCAACTAGGTGACTTCTATAGTACTTAAATGAAATTAGACTCTGGAATAACATGCCTTTCACTTTTCAGCAAATGCTAACTAGTGTCCTCATAATTAATATTGGCTATGAGGGATTATGAATAATTTTTTCTATTCAAAATATAAAAATTTAATGTTACAAATGCATTAAATATTGCACATAACCTTTAGCAAGTTCTTTTTTTATTAACTTTCCTATTCTACAAGCCTGCTCCCATGCACACTTAAGTCTGATATGTGTCTTTATGGATCCATTTCAAAGTTATCTCGCTCTCTACTGATTTTATATTATGTTTCTTTTCCCAGCATATGCAGAGATTGTGTTGAATCTTCCACAAGCACTTCAGCAGATATATCATTAAACAACCTAGAGCTTCGCCCTTTCTGCAGTCTTAGATTCTCTTGTAAAAAGTTTCTTAGTAGAATGTTATTAAATATTAGAAAATATCACTCCAGAAGTTATATAGTACCTAGCGAAATTGGTTATATAGGTTGAGGATTCATTTGATGTTGGTTATATAGGTTGAGGATTCATTTGATGTACTATGTCATACACCAACATATATTGCTCCCTCGTTATTCCTTCAATATCCTCTCTGGTGGTGTCTTGTACCATTTGTACAACAGGGATACATTGACTTTTATTGACTATTGAGACTCTTATAATTCATCTCTTCTCCACAATTCTATATACCTGTAATTTGGTTCCATATGATAAGTTCTATCTTTCTACATAAAAAGCAAAAAATGGAAGTATATCTTCGTGTGAGGCAGCCCCCCTCCCCCGCCAGCATGTACATCTAGAATTTGAAATATGATCCTATGTTACTAAAAGCGAGTACACTTCTGTCCACACTAATAGATAGTTTTAGTGTAAAATCTAGTTTATCAACTTTCATGTAACAAAATTTTACTCTAAAATGTTTAGTGTAAAATACAATGTAAAAGCATTGATTTTTCAACTTAACATTTAAGCTATTTTTTTTAATTATTTAATCATATTGAGTTTTGGCCCCAAAGACAATTTTGATTTTCATCAATATGTCAAACAAGCTAACCAAAAAAGAGACAACACATTTCCCTCAAAGATCATATTTTGATTTTCATGCATTTGTCTCAGAAGTTATCTCGCTCTCTACTGATTTTATATCATGTTTCTTATCACAGCATATGCAGAGATTGTATTGTAGCTTCCACAGTTTCTTTGAACGAGCTTATCATTTTAAACAATGAGTCAAATAAAATGCATTTCCTTATTAGTATAAATTTGTTAATATTATTATATGATAACAAATATTTTCCTACTCTCCTCTTAAATTAAATAAGGAGAGGGTTATGTTATCATCTATCCTCTCCTAAGGAAAATTTAGTTCTAAAAAGAGATTAGGACCCGCACTCTTAATGGAAGATCATACCGGTGGTGTGTTTATCTGCTAATGACTTTCTGTATTAGCTTTATTTCATTGAAGATTAGGCTGGGGCACCATAACATTCAACCACGTGCATAGAGAGCACAGCTGAATTCACATAGCTTACCCTTCTCAGATGACATCACAGCTAAGACAATGGGTCTTTATCAAGCTATTATTTATGCAGAAATGATGAATCTGGGCAAGGTGATATCGGAAATTGACTCAGAAGTGTTGGTGAAATCAATTGTTTCTCAAAAATCTTCACGCTTGCTAGCTCGTACTTGCTCTCAAATGTGTTCATAG

Protein sequence

>MS.gene85663.t1

MRKNLCERDSEVIPFTPPIIPLATRSLLLFSDHHFEQYAGRTYAPMGEVNFMQQQDDDSRLDITRAKFGSLLKRHENLADRISRDSDKVIFERLLKEFESARASQTQEIYLDGEQWNDGLLATIREQVHMEAERKALSKDADVLTSHQEKVTYKTGNKIICCLEGARIGIQYETSFAGEICEFYHCVLESKSFLEKMTVLEHTVPFFLPIRETENDLLSSNAMKFIDHVGDLLQAYVDRREQELYGNQIGELYHSLPYHMIEFVLDDFDCKVTVSLRYTDLISVLPTRISVLAWPMSKINSTPIFNMMEDGISGSHPAPVRLSYAEDALRTMSLPEGKFSSKKRLGPALLMEDHTGDDITAKTMGLYQAIIYAEMMNLGKVISEIDSEVLVKSIVSQKSSRLLARTCSQMCS