Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066264.t1 | XP_003592178.1 | 85.8 | 332 | 16 | 5 | 1 | 320 | 1 | 313 | 1.10E-140 | 509.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066264.t1 | Q9FLX4 | 29.7 | 323 | 154 | 11 | 1 | 300 | 1 | 273 | 5.3e-16 | 86.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066264.t1 | G7IDX6 | 85.8 | 332 | 16 | 5 | 1 | 320 | 1 | 313 | 7.6e-141 | 509.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene066264 | 0.815022 | 1.14E-51 | -1.69E-46 |
| MS.gene049254 | MS.gene066264 | 0.821647 | 3.61E-53 | -1.69E-46 |
| MS.gene049404 | MS.gene066264 | 0.802512 | 5.42E-49 | -1.69E-46 |
| MS.gene049435 | MS.gene066264 | 0.847994 | 8.13E-60 | -1.69E-46 |
| MS.gene049850 | MS.gene066264 | 0.806389 | 8.43E-50 | -1.69E-46 |
| MS.gene050020 | MS.gene066264 | 0.817941 | 2.54E-52 | -1.69E-46 |
| MS.gene050119 | MS.gene066264 | 0.811124 | 8.19E-51 | -1.69E-46 |
| MS.gene05016 | MS.gene066264 | 0.817545 | 3.12E-52 | -1.69E-46 |
| MS.gene050303 | MS.gene066264 | 0.806688 | 7.28E-50 | -1.69E-46 |
| MS.gene050355 | MS.gene066264 | 0.83364 | 4.75E-56 | -1.69E-46 |
| MS.gene050442 | MS.gene066264 | 0.83007 | 3.61E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene066264 | 0.825172 | 5.42E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene066264 | 0.827141 | 1.84E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene066264 | 0.808316 | 3.29E-50 | -1.69E-46 |
| MS.gene050605 | MS.gene066264 | 0.818074 | 2.37E-52 | -1.69E-46 |
| MS.gene050680 | MS.gene066264 | 0.8129 | 3.36E-51 | -1.69E-46 |
| MS.gene050719 | MS.gene066264 | 0.804304 | 2.30E-49 | -1.69E-46 |
| MS.gene050721 | MS.gene066264 | 0.801292 | 9.64E-49 | -1.69E-46 |
| MS.gene050750 | MS.gene066264 | 0.810228 | 1.28E-50 | -1.69E-46 |
| MS.gene050780 | MS.gene066264 | 0.824397 | 8.25E-54 | -1.69E-46 |
| MS.gene050807 | MS.gene066264 | 0.803804 | 2.93E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene066264 | 0.812063 | 5.12E-51 | -1.69E-46 |
| MS.gene051198 | MS.gene066264 | 0.802133 | 6.48E-49 | -1.69E-46 |
| MS.gene051247 | MS.gene066264 | 0.819097 | 1.39E-52 | -1.69E-46 |
| MS.gene051719 | MS.gene066264 | 0.804184 | 2.44E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene066264 | 0.838922 | 2.16E-57 | -1.69E-46 |
| MS.gene051957 | MS.gene066264 | 0.805348 | 1.39E-49 | -1.69E-46 |
| MS.gene052012 | MS.gene066264 | 0.811119 | 8.21E-51 | -1.69E-46 |
| MS.gene052020 | MS.gene066264 | 0.814966 | 1.18E-51 | -1.69E-46 |
| MS.gene052190 | MS.gene066264 | 0.802609 | 5.17E-49 | -1.69E-46 |
| MS.gene052208 | MS.gene066264 | 0.829372 | 5.34E-55 | -1.69E-46 |
| MS.gene052333 | MS.gene066264 | 0.822981 | 1.77E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene066264 | 0.821433 | 4.05E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene066264 | 0.831726 | 1.42E-55 | -1.69E-46 |
| MS.gene052584 | MS.gene066264 | 0.842805 | 2.07E-58 | -1.69E-46 |
| MS.gene052611 | MS.gene066264 | 0.809632 | 1.72E-50 | -1.69E-46 |
| MS.gene052867 | MS.gene066264 | 0.818558 | 1.84E-52 | -1.69E-46 |
| MS.gene053006 | MS.gene066264 | 0.810256 | 1.26E-50 | -1.69E-46 |
| MS.gene053166 | MS.gene066264 | 0.830714 | 2.51E-55 | -1.69E-46 |
| MS.gene053226 | MS.gene066264 | 0.854079 | 1.56E-61 | -1.69E-46 |
| MS.gene053953 | MS.gene066264 | 0.829039 | 6.43E-55 | -1.69E-46 |
| MS.gene053966 | MS.gene066264 | 0.814336 | 1.62E-51 | -1.69E-46 |
| MS.gene053998 | MS.gene066264 | 0.80476 | 1.85E-49 | -1.69E-46 |
| MS.gene05414 | MS.gene066264 | 0.816965 | 4.21E-52 | -1.69E-46 |
| MS.gene05415 | MS.gene066264 | 0.842926 | 1.92E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene066264 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene054291 | MS.gene066264 | -0.802948 | 4.40E-49 | -1.69E-46 |
| MS.gene054405 | MS.gene066264 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene066264 | 0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene066264 | 0.808834 | 2.55E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene066264 | 0.822956 | 1.79E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene066264 | 0.831399 | 1.71E-55 | -1.69E-46 |
| MS.gene054658 | MS.gene066264 | 0.822704 | 2.05E-53 | -1.69E-46 |
| MS.gene054775 | MS.gene066264 | 0.805101 | 1.57E-49 | -1.69E-46 |
| MS.gene054994 | MS.gene066264 | 0.807286 | 5.44E-50 | -1.69E-46 |
| MS.gene05510 | MS.gene066264 | 0.812395 | 4.33E-51 | -1.69E-46 |
| MS.gene055166 | MS.gene066264 | 0.830204 | 3.35E-55 | -1.69E-46 |
| MS.gene055227 | MS.gene066264 | 0.804747 | 1.86E-49 | -1.69E-46 |
| MS.gene055230 | MS.gene066264 | 0.808195 | 3.49E-50 | -1.69E-46 |
| MS.gene055356 | MS.gene066264 | 0.810074 | 1.38E-50 | -1.69E-46 |
| MS.gene055358 | MS.gene066264 | 0.816817 | 4.55E-52 | -1.69E-46 |
| MS.gene055586 | MS.gene066264 | 0.809016 | 2.33E-50 | -1.69E-46 |
| MS.gene055623 | MS.gene066264 | 0.814621 | 1.40E-51 | -1.69E-46 |
| MS.gene055778 | MS.gene066264 | 0.841837 | 3.73E-58 | -1.69E-46 |
| MS.gene055818 | MS.gene066264 | 0.846564 | 2.01E-59 | -1.69E-46 |
| MS.gene055841 | MS.gene066264 | 0.8067 | 7.24E-50 | -1.69E-46 |
| MS.gene05604 | MS.gene066264 | 0.812195 | 4.79E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene066264 | 0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene056162 | MS.gene066264 | 0.816646 | 4.97E-52 | -1.69E-46 |
| MS.gene056173 | MS.gene066264 | 0.822113 | 2.82E-53 | -1.69E-46 |
| MS.gene056174 | MS.gene066264 | 0.81311 | 3.02E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene066264 | 0.814091 | 1.84E-51 | -1.69E-46 |
| MS.gene056498 | MS.gene066264 | 0.839928 | 1.18E-57 | -1.69E-46 |
| MS.gene056506 | MS.gene066264 | 0.838212 | 3.29E-57 | -1.69E-46 |
| MS.gene057060 | MS.gene066264 | 0.869306 | 3.42E-66 | -1.69E-46 |
| MS.gene057208 | MS.gene066264 | 0.823608 | 1.26E-53 | -1.69E-46 |
| MS.gene057314 | MS.gene066264 | 0.837513 | 4.97E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene066264 | 0.816505 | 5.34E-52 | -1.69E-46 |
| MS.gene057693 | MS.gene066264 | 0.867577 | 1.24E-65 | -1.69E-46 |
| MS.gene057869 | MS.gene066264 | 0.816874 | 4.42E-52 | -1.69E-46 |
| MS.gene057915 | MS.gene066264 | 0.816384 | 5.69E-52 | -1.69E-46 |
| MS.gene058010 | MS.gene066264 | 0.805872 | 1.08E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene066264 | 0.82747 | 1.54E-54 | -1.69E-46 |
| MS.gene058625 | MS.gene066264 | 0.828791 | 7.39E-55 | -1.69E-46 |
| MS.gene058829 | MS.gene066264 | 0.817757 | 2.79E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene066264 | 0.817523 | 3.16E-52 | -1.69E-46 |
| MS.gene059161 | MS.gene066264 | 0.80905 | 2.29E-50 | -1.69E-46 |
| MS.gene05954 | MS.gene066264 | 0.814885 | 1.23E-51 | -1.69E-46 |
| MS.gene059569 | MS.gene066264 | 0.800783 | 1.23E-48 | -1.69E-46 |
| MS.gene059607 | MS.gene066264 | 0.807389 | 5.18E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene066264 | 0.801353 | 9.37E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene066264 | 0.818651 | 1.75E-52 | -1.69E-46 |
| MS.gene060429 | MS.gene066264 | 0.809533 | 1.80E-50 | -1.69E-46 |
| MS.gene060521 | MS.gene066264 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene060553 | MS.gene066264 | 0.813788 | 2.14E-51 | -1.69E-46 |
| MS.gene060572 | MS.gene066264 | 0.819707 | 1.01E-52 | -1.69E-46 |
| MS.gene060803 | MS.gene066264 | 0.825935 | 3.57E-54 | -1.69E-46 |
| MS.gene060918 | MS.gene066264 | 0.806564 | 7.74E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene066264 | 0.810741 | 9.91E-51 | -1.69E-46 |
| MS.gene061040 | MS.gene066264 | -0.802517 | 5.40E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066264.t1 | MTR_1g099550 | 85.843 | 332 | 16 | 5 | 1 | 320 | 1 | 313 | 0.0 | 550 |
| MS.gene066264.t1 | MTR_8g099045 | 29.805 | 359 | 160 | 12 | 1 | 290 | 1 | 336 | 1.61e-25 | 105 |
| MS.gene066264.t1 | MTR_5g009870 | 38.767 | 227 | 89 | 12 | 104 | 295 | 159 | 370 | 6.02e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene066264.t1 | AT5G52870 | 33.117 | 308 | 150 | 12 | 1 | 294 | 1 | 266 | 1.75e-28 | 112 |
| MS.gene066264.t1 | AT5G52870 | 33.117 | 308 | 150 | 12 | 1 | 294 | 1 | 266 | 1.92e-28 | 111 |
| MS.gene066264.t1 | AT1G64080 | 44.444 | 126 | 40 | 3 | 199 | 295 | 266 | 390 | 8.70e-18 | 84.0 |
Find 57 sgRNAs with CRISPR-Local
Find 75 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAAACTCGCTCTGTTT+TGG | 0.159958 | 1.1:-71722839 | None:intergenic |
| CTTTAAACTTCCTCAAGTTC+TGG | 0.310344 | 1.1:+71722278 | MS.gene066264:CDS |
| CACCGGCGGTTGGCTCTTTG+AGG | 0.337288 | 1.1:+71722983 | MS.gene066264:CDS |
| GAAACTTTGGTGGCAAAATT+CGG | 0.355433 | 1.1:+71722797 | MS.gene066264:CDS |
| GATTAAGCCTCTTTATGTTA+AGG | 0.375290 | 1.1:+71722888 | MS.gene066264:CDS |
| TTTGTTGTCGAAATCATTCA+TGG | 0.384507 | 1.1:-71722401 | None:intergenic |
| TTCGAAACCTTAACATAAAG+AGG | 0.384723 | 1.1:-71722895 | None:intergenic |
| GAAAGTGGTGACGAAGCATT+TGG | 0.391796 | 1.1:+71723005 | MS.gene066264:CDS |
| TTGGACATGTGGGTCGTCAT+TGG | 0.416385 | 1.1:-71722425 | None:intergenic |
| ATGGATGTTGTTGGTGGTGA+TGG | 0.423562 | 1.1:+71723299 | MS.gene066264:CDS |
| GAGCTTGTTCTCCGGCGAAC+AGG | 0.426734 | 1.1:+71723058 | MS.gene066264:CDS |
| TTCAGAAAACAGAGAAGAAC+TGG | 0.432309 | 1.1:+71722637 | MS.gene066264:CDS |
| GATTCTTCAATGGATGTTGT+TGG | 0.446904 | 1.1:+71723290 | MS.gene066264:intron |
| AGGTCGTCGGGTACGGTGGC+CGG | 0.454518 | 1.1:+71723036 | MS.gene066264:CDS |
| TGCTGATCTTAGAAGTGAAA+TGG | 0.459585 | 1.1:-71722593 | None:intergenic |
| TTCGAAGAGGTATGGTGATA+AGG | 0.470661 | 1.1:+71722912 | MS.gene066264:CDS |
| TAAGAGTAGGTCGTCGGGTA+CGG | 0.475412 | 1.1:+71723029 | MS.gene066264:CDS |
| GGTGGCAAAATTCGGAATCA+AGG | 0.479447 | 1.1:+71722805 | MS.gene066264:CDS |
| CCGTCTTCTTCACCGGCGGT+TGG | 0.485938 | 1.1:+71722973 | MS.gene066264:CDS |
| GTTAAGGTTTCGAAGAGGTA+TGG | 0.486790 | 1.1:+71722904 | MS.gene066264:CDS |
| GGTGATAAGGTGAAATTCTC+CGG | 0.500103 | 1.1:+71722925 | MS.gene066264:CDS |
| TGCTTCGCCGTCTTCTTCAC+CGG | 0.518483 | 1.1:+71722966 | MS.gene066264:CDS |
| CTGTTCTCTCTACTAAGCAT+TGG | 0.523196 | 1.1:-71722769 | None:intergenic |
| GAGAACAGCACAAGAAACTT+TGG | 0.523674 | 1.1:+71722784 | MS.gene066264:CDS |
| AAAGTGGTGACGAAGCATTT+GGG | 0.526267 | 1.1:+71723006 | MS.gene066264:CDS |
| AAGATGAGGAACAGTGATGT+TGG | 0.527025 | 1.1:-71722320 | None:intergenic |
| GAGGAAGTTTAAAGCATCCA+TGG | 0.529668 | 1.1:-71722269 | None:intergenic |
| AGCTACCGTCATCCCCTCGC+CGG | 0.534216 | 1.1:-71722944 | None:intergenic |
| CAAAACAGAGCGAGTTTCAA+AGG | 0.536455 | 1.1:+71722840 | MS.gene066264:CDS |
| TGTTGTTCTTCCAGAACTTG+AGG | 0.537675 | 1.1:-71722288 | None:intergenic |
| GGTTGGCTCTTTGAGGAAAG+TGG | 0.542571 | 1.1:+71722990 | MS.gene066264:CDS |
| TTGGGTAAGAGTAGGTCGTC+GGG | 0.544095 | 1.1:+71723024 | MS.gene066264:CDS |
| AAGGTGAAATTCTCCGGCGA+GGG | 0.550532 | 1.1:+71722931 | MS.gene066264:CDS |
| AAGGTAAAGATTCTGAAACT+TGG | 0.555444 | 1.1:-71722616 | None:intergenic |
| AGAAGTGAAATGGGTGATTG+TGG | 0.566819 | 1.1:-71722583 | None:intergenic |
| GGTGGCCGGAGCTTGTTCTC+CGG | 0.566890 | 1.1:+71723050 | MS.gene066264:CDS |
| ATTCTCCGGCGAGGGGATGA+CGG | 0.568736 | 1.1:+71722939 | MS.gene066264:CDS |
| GCTGATCTTAGAAGTGAAAT+GGG | 0.571175 | 1.1:-71722592 | None:intergenic |
| TTCCTCAAAGAGCCAACCGC+CGG | 0.578853 | 1.1:-71722985 | None:intergenic |
| CGAAGCATTTGGGTAAGAGT+AGG | 0.585768 | 1.1:+71723016 | MS.gene066264:CDS |
| TTTGGGTAAGAGTAGGTCGT+CGG | 0.592489 | 1.1:+71723023 | MS.gene066264:CDS |
| ACGCTGTTGCAGCAACATGA+TGG | 0.598349 | 1.1:+71723090 | MS.gene066264:CDS |
| GTATCATCACTCCTGTTCGC+CGG | 0.598908 | 1.1:-71723069 | None:intergenic |
| TCTTCAATGGATGTTGTTGG+TGG | 0.599000 | 1.1:+71723293 | MS.gene066264:CDS |
| CCAACCGCCGGTGAAGAAGA+CGG | 0.604637 | 1.1:-71722973 | None:intergenic |
| GTTCGCCGGAGAACAAGCTC+CGG | 0.605965 | 1.1:-71723055 | None:intergenic |
| GAGTAGGTCGTCGGGTACGG+TGG | 0.623063 | 1.1:+71723032 | MS.gene066264:CDS |
| AACAGCACAAGAAACTTTGG+TGG | 0.628576 | 1.1:+71722787 | MS.gene066264:CDS |
| TTCGCCGTCTTCTTCACCGG+CGG | 0.640158 | 1.1:+71722969 | MS.gene066264:CDS |
| TCTGTTTCTACAACAAGATG+AGG | 0.645146 | 1.1:-71722334 | None:intergenic |
| AAGAGATCCTTCAATTCCAG+AGG | 0.646564 | 1.1:+71723138 | MS.gene066264:CDS |
| AGGTGAAATTCTCCGGCGAG+GGG | 0.653189 | 1.1:+71722932 | MS.gene066264:CDS |
| GAATCAGAAGAAAGAAACCA+AGG | 0.653413 | 1.1:+71722702 | MS.gene066264:CDS |
| TAAGGTGAAATTCTCCGGCG+AGG | 0.664840 | 1.1:+71722930 | MS.gene066264:CDS |
| ATGAGGAACAGTGATGTTGG+AGG | 0.666650 | 1.1:-71722317 | None:intergenic |
| TTTATGTTAAGGTTTCGAAG+AGG | 0.679040 | 1.1:+71722899 | MS.gene066264:CDS |
| AATTCGGAATCAAGGAACAG+AGG | 0.681760 | 1.1:+71722813 | MS.gene066264:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATATGATTATTTTTGAA+AGG | + | chr1.1:71723210-71723229 | MS.gene066264:intron | 10.0% |
| !!! | ATAATTTTCAGATTCTTCAA+TGG | + | chr1.1:71723280-71723299 | MS.gene066264:intron | 20.0% |
| !! | TTCAACAAGAAATTCTTTTG+AGG | + | chr1.1:71723331-71723350 | MS.gene066264:CDS | 25.0% |
| !!! | ATAAGAAGTGTTGTTTTTTG+AGG | - | chr1.1:71722505-71722524 | None:intergenic | 25.0% |
| GATTAAGCCTCTTTATGTTA+AGG | + | chr1.1:71722888-71722907 | MS.gene066264:CDS | 30.0% | |
| TAGTTTCACAGAAAAAACCT+TGG | - | chr1.1:71722722-71722741 | None:intergenic | 30.0% | |
| TTCGAAACCTTAACATAAAG+AGG | - | chr1.1:71722898-71722917 | None:intergenic | 30.0% | |
| TTTATGTTAAGGTTTCGAAG+AGG | + | chr1.1:71722899-71722918 | MS.gene066264:CDS | 30.0% | |
| ! | GTTTTCTGTTTTGTGAGTTT+TGG | - | chr1.1:71722452-71722471 | None:intergenic | 30.0% |
| ! | TGTGAAACAAATTTTACCTC+TGG | - | chr1.1:71723157-71723176 | None:intergenic | 30.0% |
| ! | TTTGTTGTCGAAATCATTCA+TGG | - | chr1.1:71722404-71722423 | None:intergenic | 30.0% |
| !! | AAGGTAAAGATTCTGAAACT+TGG | - | chr1.1:71722619-71722638 | None:intergenic | 30.0% |
| !! | ATTAGTTTCAGTTTTCTCGT+AGG | - | chr1.1:71722479-71722498 | None:intergenic | 30.0% |
| !!! | AATTTTACCTCTGGAATTGA+AGG | - | chr1.1:71723148-71723167 | None:intergenic | 30.0% |
| !!! | AGCACTTTTCTTTTTGAGAT+AGG | - | chr1.1:71722541-71722560 | None:intergenic | 30.0% |
| CTTTAAACTTCCTCAAGTTC+TGG | + | chr1.1:71722278-71722297 | MS.gene066264:CDS | 35.0% | |
| GAATCAGAAGAAAGAAACCA+AGG | + | chr1.1:71722702-71722721 | MS.gene066264:CDS | 35.0% | |
| GATTCTTCAATGGATGTTGT+TGG | + | chr1.1:71723290-71723309 | MS.gene066264:intron | 35.0% | |
| GCTGATCTTAGAAGTGAAAT+GGG | - | chr1.1:71722595-71722614 | None:intergenic | 35.0% | |
| TGCTGATCTTAGAAGTGAAA+TGG | - | chr1.1:71722596-71722615 | None:intergenic | 35.0% | |
| TTCAGAAAACAGAGAAGAAC+TGG | + | chr1.1:71722637-71722656 | MS.gene066264:CDS | 35.0% | |
| ! | AGTTCTTCTCTGTTTTCTGA+AGG | - | chr1.1:71722638-71722657 | None:intergenic | 35.0% |
| ! | GAAACTTTGGTGGCAAAATT+CGG | + | chr1.1:71722797-71722816 | MS.gene066264:CDS | 35.0% |
| !! | TCTGTTTCTACAACAAGATG+AGG | - | chr1.1:71722337-71722356 | None:intergenic | 35.0% |
| !! | TTTGAAACTCGCTCTGTTTT+GGG | - | chr1.1:71722841-71722860 | None:intergenic | 35.0% |
| !!! | CTGTTTTGTGAGTTTTGGTT+TGG | - | chr1.1:71722447-71722466 | None:intergenic | 35.0% |
| !!! | CTTTTTGAGATAGGTTCGTT+TGG | - | chr1.1:71722532-71722551 | None:intergenic | 35.0% |
| !!! | GGTGATTGTGGTTTTGAAAT+GGG | - | chr1.1:71722574-71722593 | None:intergenic | 35.0% |
| !!! | GGTTTTGAAATGGGTTCAAT+TGG | - | chr1.1:71722565-71722584 | None:intergenic | 35.0% |
| AACAGCACAAGAAACTTTGG+TGG | + | chr1.1:71722787-71722806 | MS.gene066264:CDS | 40.0% | |
| AAGAGATCCTTCAATTCCAG+AGG | + | chr1.1:71723138-71723157 | MS.gene066264:CDS | 40.0% | |
| AAGATGAGGAACAGTGATGT+TGG | - | chr1.1:71722323-71722342 | None:intergenic | 40.0% | |
| AATTCGGAATCAAGGAACAG+AGG | + | chr1.1:71722813-71722832 | MS.gene066264:CDS | 40.0% | |
| AGAAGTGAAATGGGTGATTG+TGG | - | chr1.1:71722586-71722605 | None:intergenic | 40.0% | |
| CAAAACAGAGCGAGTTTCAA+AGG | + | chr1.1:71722840-71722859 | MS.gene066264:CDS | 40.0% | |
| CTGTTCTCTCTACTAAGCAT+TGG | - | chr1.1:71722772-71722791 | None:intergenic | 40.0% | |
| GAGAACAGCACAAGAAACTT+TGG | + | chr1.1:71722784-71722803 | MS.gene066264:CDS | 40.0% | |
| GGTGATAAGGTGAAATTCTC+CGG | + | chr1.1:71722925-71722944 | MS.gene066264:CDS | 40.0% | |
| GTTAAGGTTTCGAAGAGGTA+TGG | + | chr1.1:71722904-71722923 | MS.gene066264:CDS | 40.0% | |
| TCTTCAATGGATGTTGTTGG+TGG | + | chr1.1:71723293-71723312 | MS.gene066264:CDS | 40.0% | |
| TGTTGTTCTTCCAGAACTTG+AGG | - | chr1.1:71722291-71722310 | None:intergenic | 40.0% | |
| ! | AAAGTGGTGACGAAGCATTT+GGG | + | chr1.1:71723006-71723025 | MS.gene066264:CDS | 40.0% |
| ! | TTCGAAGAGGTATGGTGATA+AGG | + | chr1.1:71722912-71722931 | MS.gene066264:CDS | 40.0% |
| !!! | CTTTGAAACTCGCTCTGTTT+TGG | - | chr1.1:71722842-71722861 | None:intergenic | 40.0% |
| !!! | GAGTTTTGGTTTGGACATGT+GGG | - | chr1.1:71722438-71722457 | None:intergenic | 40.0% |
| !!! | GGGTGATTGTGGTTTTGAAA+TGG | - | chr1.1:71722575-71722594 | None:intergenic | 40.0% |
| !!! | TGAGTTTTGGTTTGGACATG+TGG | - | chr1.1:71722439-71722458 | None:intergenic | 40.0% |
| ATGAGGAACAGTGATGTTGG+AGG | - | chr1.1:71722320-71722339 | None:intergenic | 45.0% | |
| GGTGGCAAAATTCGGAATCA+AGG | + | chr1.1:71722805-71722824 | MS.gene066264:CDS | 45.0% | |
| TTTGGGTAAGAGTAGGTCGT+CGG | + | chr1.1:71723023-71723042 | MS.gene066264:CDS | 45.0% | |
| ! | CGAAGCATTTGGGTAAGAGT+AGG | + | chr1.1:71723016-71723035 | MS.gene066264:CDS | 45.0% |
| ! | GAAAGTGGTGACGAAGCATT+TGG | + | chr1.1:71723005-71723024 | MS.gene066264:CDS | 45.0% |
| !! | ATGGATGTTGTTGGTGGTGA+TGG | + | chr1.1:71723299-71723318 | MS.gene066264:CDS | 45.0% |
| AAGGTGAAATTCTCCGGCGA+GGG | + | chr1.1:71722931-71722950 | MS.gene066264:CDS | 50.0% | |
| ACGCTGTTGCAGCAACATGA+TGG | + | chr1.1:71723090-71723109 | MS.gene066264:CDS | 50.0% | |
| GTATCATCACTCCTGTTCGC+CGG | - | chr1.1:71723072-71723091 | None:intergenic | 50.0% | |
| TAAGAGTAGGTCGTCGGGTA+CGG | + | chr1.1:71723029-71723048 | MS.gene066264:CDS | 50.0% | |
| TAAGGTGAAATTCTCCGGCG+AGG | + | chr1.1:71722930-71722949 | MS.gene066264:CDS | 50.0% | |
| TTGGACATGTGGGTCGTCAT+TGG | - | chr1.1:71722428-71722447 | None:intergenic | 50.0% | |
| TTGGGTAAGAGTAGGTCGTC+GGG | + | chr1.1:71723024-71723043 | MS.gene066264:CDS | 50.0% | |
| ! | GGTTGGCTCTTTGAGGAAAG+TGG | + | chr1.1:71722990-71723009 | MS.gene066264:CDS | 50.0% |
| AGGTGAAATTCTCCGGCGAG+GGG | + | chr1.1:71722932-71722951 | MS.gene066264:CDS | 55.0% | |
| TGCTTCGCCGTCTTCTTCAC+CGG | + | chr1.1:71722966-71722985 | MS.gene066264:CDS | 55.0% | |
| TTCCTCAAAGAGCCAACCGC+CGG | - | chr1.1:71722988-71723007 | None:intergenic | 55.0% | |
| ATTCTCCGGCGAGGGGATGA+CGG | + | chr1.1:71722939-71722958 | MS.gene066264:CDS | 60.0% | |
| CCAACCGCCGGTGAAGAAGA+CGG | - | chr1.1:71722976-71722995 | None:intergenic | 60.0% | |
| GTTCGCCGGAGAACAAGCTC+CGG | - | chr1.1:71723058-71723077 | None:intergenic | 60.0% | |
| TTCGCCGTCTTCTTCACCGG+CGG | + | chr1.1:71722969-71722988 | MS.gene066264:CDS | 60.0% | |
| ! | GAGCTTGTTCTCCGGCGAAC+AGG | + | chr1.1:71723058-71723077 | MS.gene066264:CDS | 60.0% |
| AGCTACCGTCATCCCCTCGC+CGG | - | chr1.1:71722947-71722966 | None:intergenic | 65.0% | |
| CCGTCTTCTTCACCGGCGGT+TGG | + | chr1.1:71722973-71722992 | MS.gene066264:CDS | 65.0% | |
| GAGTAGGTCGTCGGGTACGG+TGG | + | chr1.1:71723032-71723051 | MS.gene066264:CDS | 65.0% | |
| ! | CACCGGCGGTTGGCTCTTTG+AGG | + | chr1.1:71722983-71723002 | MS.gene066264:CDS | 65.0% |
| ! | GGTGGCCGGAGCTTGTTCTC+CGG | + | chr1.1:71723050-71723069 | MS.gene066264:CDS | 65.0% |
| AGGTCGTCGGGTACGGTGGC+CGG | + | chr1.1:71723036-71723055 | MS.gene066264:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 71722271 | 71723364 | 71722271 | ID=MS.gene066264 |
| chr1.1 | mRNA | 71722271 | 71723364 | 71722271 | ID=MS.gene066264.t1;Parent=MS.gene066264 |
| chr1.1 | exon | 71722271 | 71723159 | 71722271 | ID=MS.gene066264.t1.exon1;Parent=MS.gene066264.t1 |
| chr1.1 | CDS | 71722271 | 71723159 | 71722271 | ID=cds.MS.gene066264.t1;Parent=MS.gene066264.t1 |
| chr1.1 | exon | 71723291 | 71723364 | 71723291 | ID=MS.gene066264.t1.exon2;Parent=MS.gene066264.t1 |
| chr1.1 | CDS | 71723291 | 71723364 | 71723291 | ID=cds.MS.gene066264.t1;Parent=MS.gene066264.t1 |
| Gene Sequence |
| Protein sequence |
