AlfalfaGEDB | MS.gene51459

M. sativa cultivar XinJiangDaYe / MS.gene51459

KEGG: -
GO: -
PFAM: PF04570.17

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51459.t1	TKY72580.1	78.8	66	12	1	2	67	49	112	9.70E-20	105.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51459.t1	Q9FH22	71.4	56	14	1	2	57	64	117	3.3e-16	85.1

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51459.t1	A0A1S3ECH2	77.8	63	14	0	2	64	54	116	2.7e-19	103.6

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene51459	0.848942	4.44E-60	-1.69E-46
MS.gene049404	MS.gene51459	0.80808	3.69E-50	-1.69E-46
MS.gene049435	MS.gene51459	0.840656	7.63E-58	-1.69E-46
MS.gene049501	MS.gene51459	0.805812	1.11E-49	-1.69E-46
MS.gene049850	MS.gene51459	0.838568	2.66E-57	-1.69E-46
MS.gene050020	MS.gene51459	0.863055	3.27E-64	-1.69E-46
MS.gene050119	MS.gene51459	0.804612	1.99E-49	-1.69E-46
MS.gene050156	MS.gene51459	0.820955	5.22E-53	-1.69E-46
MS.gene050442	MS.gene51459	0.815758	7.84E-52	-1.69E-46
MS.gene050680	MS.gene51459	0.80306	4.17E-49	-1.69E-46
MS.gene050807	MS.gene51459	0.800869	1.18E-48	-1.69E-46
MS.gene050815	MS.gene51459	0.805508	1.29E-49	-1.69E-46
MS.gene050844	MS.gene51459	0.819312	1.24E-52	-1.69E-46
MS.gene051247	MS.gene51459	0.81054	1.10E-50	-1.69E-46
MS.gene051265	MS.gene51459	0.822359	2.47E-53	-1.69E-46
MS.gene051344	MS.gene51459	0.803937	2.75E-49	-1.69E-46
MS.gene05157	MS.gene51459	0.829808	4.19E-55	-1.69E-46
MS.gene051719	MS.gene51459	0.828517	8.60E-55	-1.69E-46
MS.gene051720	MS.gene51459	0.811044	8.52E-51	-1.69E-46
MS.gene051957	MS.gene51459	0.803745	3.01E-49	-1.69E-46
MS.gene052012	MS.gene51459	0.804266	2.35E-49	-1.69E-46
MS.gene052020	MS.gene51459	0.857274	1.83E-62	-1.69E-46
MS.gene052190	MS.gene51459	0.824863	6.41E-54	-1.69E-46
MS.gene052323	MS.gene51459	0.80399	2.68E-49	-1.69E-46
MS.gene052456	MS.gene51459	0.824733	6.88E-54	-1.69E-46
MS.gene052519	MS.gene51459	0.818689	1.72E-52	-1.69E-46
MS.gene052611	MS.gene51459	0.870693	1.20E-66	-1.69E-46
MS.gene052612	MS.gene51459	0.855056	8.15E-62	-1.69E-46
MS.gene052613	MS.gene51459	0.808523	2.97E-50	-1.69E-46
MS.gene052665	MS.gene51459	0.802874	4.56E-49	-1.69E-46
MS.gene052829	MS.gene51459	0.803026	4.24E-49	-1.69E-46
MS.gene052863	MS.gene51459	0.861131	1.27E-63	-1.69E-46
MS.gene05288	MS.gene51459	0.807959	3.92E-50	-1.69E-46
MS.gene052896	MS.gene51459	0.820214	7.72E-53	-1.69E-46
MS.gene05289	MS.gene51459	0.81553	8.82E-52	-1.69E-46
MS.gene053008	MS.gene51459	0.838253	3.21E-57	-1.69E-46
MS.gene053166	MS.gene51459	0.817763	2.79E-52	-1.69E-46
MS.gene053226	MS.gene51459	0.838836	2.27E-57	-1.69E-46
MS.gene053966	MS.gene51459	0.819567	1.09E-52	-1.69E-46
MS.gene053967	MS.gene51459	0.841547	4.45E-58	-1.69E-46
MS.gene053974	MS.gene51459	0.822951	1.80E-53	-1.69E-46
MS.gene053998	MS.gene51459	0.808004	3.83E-50	-1.69E-46
MS.gene054433	MS.gene51459	0.812217	4.74E-51	-1.69E-46
MS.gene054467	MS.gene51459	0.820985	5.14E-53	-1.69E-46
MS.gene05447	MS.gene51459	0.810435	1.15E-50	-1.69E-46
MS.gene054559	MS.gene51459	0.827897	1.21E-54	-1.69E-46
MS.gene054651	MS.gene51459	0.806663	7.37E-50	-1.69E-46
MS.gene054697	MS.gene51459	0.802144	6.45E-49	-1.69E-46
MS.gene054775	MS.gene51459	0.827803	1.28E-54	-1.69E-46
MS.gene054801	MS.gene51459	0.834807	2.42E-56	-1.69E-46
MS.gene055227	MS.gene51459	0.808186	3.50E-50	-1.69E-46
MS.gene055356	MS.gene51459	0.846873	1.65E-59	-1.69E-46
MS.gene055357	MS.gene51459	0.853152	2.89E-61	-1.69E-46
MS.gene055358	MS.gene51459	0.855684	5.35E-62	-1.69E-46
MS.gene055359	MS.gene51459	0.81469	1.36E-51	-1.69E-46
MS.gene055363	MS.gene51459	0.807633	4.59E-50	-1.69E-46
MS.gene055465	MS.gene51459	0.802008	6.88E-49	-1.69E-46
MS.gene055466	MS.gene51459	0.827296	1.69E-54	-1.69E-46
MS.gene055512	MS.gene51459	0.810627	1.05E-50	-1.69E-46
MS.gene055818	MS.gene51459	0.846213	2.50E-59	-1.69E-46
MS.gene055926	MS.gene51459	0.804322	2.28E-49	-1.69E-46
MS.gene05604	MS.gene51459	0.807576	4.72E-50	-1.69E-46
MS.gene056173	MS.gene51459	0.853751	1.94E-61	-1.69E-46
MS.gene056366	MS.gene51459	0.828064	1.11E-54	-1.69E-46
MS.gene056498	MS.gene51459	0.822718	2.04E-53	-1.69E-46
MS.gene056542	MS.gene51459	0.824312	8.64E-54	-1.69E-46
MS.gene056543	MS.gene51459	0.816164	6.37E-52	-1.69E-46
MS.gene056545	MS.gene51459	0.822159	2.75E-53	-1.69E-46
MS.gene056553	MS.gene51459	0.831172	1.94E-55	-1.69E-46
MS.gene057060	MS.gene51459	0.837087	6.39E-57	-1.69E-46
MS.gene057444	MS.gene51459	0.838624	2.57E-57	-1.69E-46
MS.gene057693	MS.gene51459	0.842136	3.11E-58	-1.69E-46
MS.gene057869	MS.gene51459	0.803779	2.96E-49	-1.69E-46
MS.gene057915	MS.gene51459	0.823192	1.58E-53	-1.69E-46
MS.gene058010	MS.gene51459	0.805027	1.63E-49	-1.69E-46
MS.gene058168	MS.gene51459	0.809629	1.72E-50	-1.69E-46
MS.gene058625	MS.gene51459	0.839128	1.91E-57	-1.69E-46
MS.gene058636	MS.gene51459	0.802425	5.65E-49	-1.69E-46
MS.gene058829	MS.gene51459	0.840668	7.57E-58	-1.69E-46
MS.gene058979	MS.gene51459	0.830095	3.56E-55	-1.69E-46
MS.gene059128	MS.gene51459	0.805154	1.53E-49	-1.69E-46
MS.gene059607	MS.gene51459	0.815724	7.98E-52	-1.69E-46
MS.gene059789	MS.gene51459	0.802516	5.41E-49	-1.69E-46
MS.gene059842	MS.gene51459	0.823061	1.70E-53	-1.69E-46
MS.gene059937	MS.gene51459	0.821438	4.04E-53	-1.69E-46
MS.gene060137	MS.gene51459	-0.828703	7.76E-55	-1.69E-46
MS.gene060312	MS.gene51459	0.811361	7.28E-51	-1.69E-46
MS.gene060322	MS.gene51459	0.833439	5.33E-56	-1.69E-46
MS.gene060587	MS.gene51459	0.812975	3.23E-51	-1.69E-46
MS.gene060781	MS.gene51459	0.818527	1.87E-52	-1.69E-46
MS.gene060803	MS.gene51459	0.832722	8.04E-56	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51459.t1	MTR_2g436020	96.491	57	2	0	1	57	59	115	9.62e-37	120
MS.gene51459.t1	MTR_2g436250	96.491	57	2	0	1	57	59	115	9.62e-37	120
MS.gene51459.t1	MTR_4g120160	74.510	51	13	0	4	54	60	110	1.86e-23	85.5
MS.gene51459.t1	MTR_3g073960	60.465	43	17	0	6	48	90	132	6.15e-15	65.1
MS.gene51459.t1	MTR_8g022950	63.415	41	15	0	6	46	39	79	3.33e-14	62.0
MS.gene51459.t1	MTR_3g087700	58.140	43	18	0	6	48	124	166	4.30e-13	60.8
MS.gene51459.t1	MTR_4g099050	53.846	52	24	0	1	52	68	119	4.62e-13	60.1
MS.gene51459.t1	MTR_4g124930	57.778	45	18	1	4	48	176	219	1.64e-12	59.7
MS.gene51459.t1	MTR_4g124930	57.778	45	18	1	4	48	176	219	2.00e-12	59.7
MS.gene51459.t1	MTR_2g042970	62.791	43	15	1	6	48	186	227	9.40e-12	58.2
MS.gene51459.t1	MTR_3g108290	54.545	44	20	0	4	47	352	395	1.67e-11	57.8
MS.gene51459.t1	MTR_5g013770	51.923	52	24	1	1	52	80	130	2.16e-11	55.8
MS.gene51459.t1	MTR_8g008840	58.537	41	17	0	6	46	38	78	2.80e-11	54.7
MS.gene51459.t1	MTR_1g010140	51.923	52	24	1	6	56	275	326	3.01e-11	57.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene51459.t1	AT5G49120	71.429	56	14	1	2	57	64	117	8.52e-23	85.1
MS.gene51459.t1	AT1G22160	62.791	43	16	0	6	48	78	120	1.04e-15	66.6
MS.gene51459.t1	AT1G78020	42.623	61	35	0	6	66	89	149	6.30e-15	65.1
MS.gene51459.t1	AT4G39795	54.167	48	22	0	4	51	71	118	7.27e-15	63.9
MS.gene51459.t1	AT2G44670	60.000	45	18	0	2	46	12	56	8.85e-13	57.8
MS.gene51459.t1	AT5G65040	56.818	44	19	0	6	49	57	100	1.19e-12	58.2
MS.gene51459.t1	AT5G47060	57.778	45	19	0	2	46	93	137	1.05e-11	57.0
MS.gene51459.t1	AT5G47060	57.778	45	19	0	2	46	93	137	1.05e-11	57.0
MS.gene51459.t1	AT1G74940	62.222	45	16	1	4	48	148	191	1.88e-11	57.0

Find 0 sgRNAs with CRISPR-Local

Find 11 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATATAAAGTTTTCATAACAT+AGG	-	16960:1656-1675	MS.gene51459:intergenic	15.0%
!!	CAAAAATAAAACAAAGATCT+AGG	-	16960:1715-1734	MS.gene51459:intergenic	20.0%
!!!	GTTTATTTTTTTTGTGAAGA+GGG	+	16960:1795-1814	MS.gene51459:intron	20.0%
!!!	TGTTTATTTTTTTTGTGAAG+AGG	+	16960:1794-1813	MS.gene51459:intron	20.0%
!!!	TTTATTTTTTTTGTGAAGAG+GGG	+	16960:1796-1815	MS.gene51459:intron	20.0%
!	TACATATAGATGTCTTTTCC+AGG	-	16960:1607-1626	MS.gene51459:intergenic	30.0%
	AAGATGAAGAAATTGCAGCA+TGG	-	16960:1910-1929	MS.gene51458:intergenic	35.0%
	TAGATGCAAGCAAATTGTGA+TGG	+	16960:1844-1863	MS.gene51459:CDS	35.0%
	TGTAGGAAAAAGTTGTTACC+TGG	+	16960:1586-1605	MS.gene51459:CDS	35.0%
!!	TTGAGCTTTGTTCTCTCTGT+AGG	+	16960:1569-1588	MS.gene51459:CDS	40.0%
	GGATAGAGCTTTCTGTAGTG+TGG	+	16960:1817-1836	MS.gene51459:CDS	45.0%

Chromosome	Type	Strat	End	Strand	Name
16960	gene	1550	1937	1550	ID=MS.gene51459
16960	mRNA	1550	1937	1550	ID=MS.gene51459.t1;Parent=MS.gene51459
16960	exon	1550	1629	1550	ID=MS.gene51459.t1.exon1;Parent=MS.gene51459.t1
16960	CDS	1550	1629	1550	ID=cds.MS.gene51459.t1;Parent=MS.gene51459.t1
16960	exon	1814	1937	1814	ID=MS.gene51459.t1.exon2;Parent=MS.gene51459.t1
16960	CDS	1814	1937	1814	ID=cds.MS.gene51459.t1;Parent=MS.gene51459.t1

Gene Sequence

>MS.gene51459

GAACAACAAACAACGTTTCTTGAGCTTTGTTCTCTCTGTAGGAAAAAGTTGTTACCTGGAAAAGACATCTATATGTACAAGTAAGTTCTTCTATATTTTATAACCTATGTTATGAAAACTTTATATTATTATTATTATTATTATTATTTTCTGTTGAAAAAACCTAGATCTTTGTTTTATTTTTGTTCTGTCTAAAAAAACATGTTTTTTTTATTCTATGTTTGAGTTTTTTAGCTCATTTTTGTGTTTATTTTTTTTGTGAAGAGGGGATAGAGCTTTCTGTAGTGTGGAATGTAGATGCAAGCAAATTGTGATGGATGAAGAAGAAAGTAACAATATTCAGAATGAGAACTGTTACCATGCTGCAATTTCTTCATCTTCTTCAGAA

Protein sequence

>MS.gene51459.t1

EQQTTFLELCSLCRKKLLPGKDIYMYKGDRAFCSVECRCKQIVMDEEESNNIQNENCYHAAISSSSSE