AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene06138

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06138.t1 MTR_8g104120 94.664 581 11 2 1 566 1 576 0.0 1122
MS.gene06138.t1 MTR_8g104110 89.212 584 39 6 1 566 1 578 0.0 1045
MS.gene06138.t1 MTR_8g104130 77.778 585 92 7 1 566 1 566 0.0 874
MS.gene06138.t1 MTR_6g084680 66.332 597 161 7 4 566 7 597 0.0 749
MS.gene06138.t1 MTR_1g111250 53.203 562 214 11 9 547 12 547 0.0 569
MS.gene06138.t1 MTR_1g115140 29.709 515 303 9 51 543 27 504 1.07e-70 236
MS.gene06138.t1 MTR_1g115175 29.537 518 310 11 51 549 23 504 1.61e-68 231
MS.gene06138.t1 MTR_1g115190 30.948 517 298 11 51 543 24 505 2.09e-67 228
MS.gene06138.t1 MTR_1g077660 36.066 366 197 10 52 397 34 382 4.71e-67 225
MS.gene06138.t1 MTR_4g098570 32.290 511 288 11 51 543 35 505 1.29e-66 226
MS.gene06138.t1 MTR_5g014310 31.346 520 288 12 51 543 43 520 3.28e-64 219
MS.gene06138.t1 MTR_1g077670 33.514 370 206 8 47 397 41 389 2.54e-60 207
MS.gene06138.t1 MTR_2g087288 34.049 326 182 7 65 369 37 350 1.72e-57 199
MS.gene06138.t1 MTR_4g098610 30.920 511 295 10 51 543 35 505 5.79e-56 197
MS.gene06138.t1 MTR_2g087285 33.238 349 198 7 41 371 20 351 9.36e-55 192
MS.gene06138.t1 MTR_4g051575 32.923 325 190 5 65 371 41 355 4.29e-54 191
MS.gene06138.t1 MTR_7g106260 33.728 338 194 5 50 369 27 352 1.13e-51 184
MS.gene06138.t1 MTR_7g094770 31.672 341 196 11 70 387 61 387 7.90e-48 173
MS.gene06138.t1 MTR_4g051575 28.986 207 137 2 165 371 25 221 9.61e-27 111
MS.gene06138.t1 MTR_1g077870 67.073 82 12 1 116 182 189 270 1.13e-25 107
MS.gene06138.t1 MTR_6g015325 62.069 87 15 2 119 190 7 90 1.46e-24 98.6
MS.gene06138.t1 MTR_0710s0020 39.623 159 76 4 51 190 24 181 1.80e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene06138.t1 AT3G18440 58.462 585 180 10 6 544 3 570 0.0 650
MS.gene06138.t1 AT1G18420 58.429 522 189 8 48 547 66 581 0.0 597
MS.gene06138.t1 AT1G18420 59.127 504 178 8 66 547 1 498 0.0 587
MS.gene06138.t1 AT1G68600 56.863 510 175 11 62 547 45 533 0.0 541
MS.gene06138.t1 AT2G17470 51.950 564 210 12 23 560 19 547 0.0 536
MS.gene06138.t1 AT2G17470 52.057 559 207 12 28 560 2 525 0.0 534
MS.gene06138.t1 AT1G25480 51.601 562 221 10 17 547 4 545 0.0 533
MS.gene06138.t1 AT4G17970 31.120 527 318 12 56 552 30 541 3.04e-74 246
MS.gene06138.t1 AT5G46610 29.831 533 318 11 46 549 22 527 2.63e-72 241
MS.gene06138.t1 AT5G46600 30.168 537 306 12 44 543 21 525 1.02e-68 231
MS.gene06138.t1 AT1G08430 34.188 351 197 7 59 385 7 347 8.66e-64 217
MS.gene06138.t1 AT5G46610 28.324 519 320 13 46 549 22 503 4.24e-60 208
MS.gene06138.t1 AT1G08440 33.043 345 196 7 59 382 7 337 1.05e-59 206
MS.gene06138.t1 AT5G46610 27.853 517 302 11 46 549 22 480 1.07e-59 206
MS.gene06138.t1 AT4G00910 30.387 362 225 7 52 392 42 397 3.20e-58 202
MS.gene06138.t1 AT2G27240 30.564 337 209 5 59 377 7 336 1.22e-53 189
MS.gene06138.t1 AT2G27240 30.532 357 209 8 59 377 7 362 1.28e-52 187
MS.gene06138.t1 AT3G11680 35.604 323 178 6 65 369 38 348 7.29e-52 185
MS.gene06138.t1 AT3G11680 35.604 323 178 6 65 369 36 346 8.17e-52 185

Find 112 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTGAAGCCTTATGAATA+TGG 0.174410 4.1:+2347680 MS.gene06138:intron
ACTTGGTGCTGCTGTATCTT+TGG 0.219480 4.1:+2347802 MS.gene06138:CDS
TATCTTCATCCATGTGAAAT+AGG 0.224414 4.1:-2349351 None:intergenic
GGGTGAGAAAGCTAACTTTA+AGG 0.239700 4.1:+2349690 MS.gene06138:CDS
TATTGCTACATTACGGTATC+TGG 0.258630 4.1:+2347725 MS.gene06138:CDS
TTATACTTTAGCTGAGAAAA+AGG 0.264645 4.1:+2345945 MS.gene06138:CDS
CGGTGGCCTCTGGCGGGTTT+TGG 0.270967 4.1:+2349734 MS.gene06138:CDS
CACGGGTGTTGCAACATCTT+TGG 0.277271 4.1:+2347892 MS.gene06138:CDS
ATGCATACTTTCTGAAATTC+AGG 0.279585 4.1:+2348663 MS.gene06138:CDS
AGTGGACTCATTTGAAGAAT+TGG 0.284232 4.1:+2349669 MS.gene06138:CDS
AGCTTGGTAAGTCAGAATTT+TGG 0.284312 4.1:-2348357 None:intergenic
AGAGGGTTTAACAGAGGATT+AGG 0.297132 4.1:+2347524 MS.gene06138:CDS
ATATCTGCATATATCCTATC+TGG 0.298144 4.1:+2347831 MS.gene06138:CDS
TCTTGTATTCTACACAATTA+AGG 0.310510 4.1:-2348325 None:intergenic
TGCTAAAATGGGTCTTGCTT+TGG 0.318097 4.1:+2346140 MS.gene06138:CDS
TCCTTGTAAACTCAGAGTTC+TGG 0.320441 4.1:+2349278 MS.gene06138:CDS
GATCTGTAGCCACTGTAAAC+TGG 0.326018 4.1:-2348392 None:intergenic
CAATTGAAGTTCAAAACAAT+TGG 0.343510 4.1:+2349425 MS.gene06138:CDS
CCACCGCGTCTTGCTGTTCA+AGG 0.347600 4.1:-2349717 None:intergenic
CTTGGTGCTGCTGTATCTTT+GGG 0.350864 4.1:+2347803 MS.gene06138:CDS
ATGATGATCACCACCCTTCA+TGG 0.354913 4.1:-2345980 None:intergenic
TCATCATTACTTTCATCTCT+TGG 0.366431 4.1:-2349316 None:intergenic
CTTTGAAGCCTTATGAATAT+GGG 0.373468 4.1:+2347681 MS.gene06138:intron
TCCATGTGAAATAGGCCTTT+AGG 0.373875 4.1:-2349343 None:intergenic
GCGCAACACTCTTGCTCCTT+CGG 0.378158 4.1:-2349143 None:intergenic
GGTTATTCTCGTATAGGAAA+TGG 0.382637 4.1:+2346003 MS.gene06138:CDS
AGCAAGGCTTCAAAATTTAG+TGG 0.384771 4.1:+2349651 MS.gene06138:CDS
AAATGGTTTGCTACAAGAAC+AGG 0.386700 4.1:+2346020 MS.gene06138:CDS
CATCATGGTTATTCTCGTAT+AGG 0.388681 4.1:+2345997 MS.gene06138:CDS
GATTACTTATTGCTACATTA+CGG 0.393061 4.1:+2347718 MS.gene06138:CDS
GTGGACTCATTTGAAGAATT+GGG 0.396405 4.1:+2349670 MS.gene06138:CDS
CAGCAAGACGCGGTGGCCTC+TGG 0.399863 4.1:+2349724 MS.gene06138:CDS
GCAAGAGTGTTGCGCGAACT+TGG 0.410191 4.1:+2349151 MS.gene06138:CDS
TCTAAGACATTGTGCATTCA+TGG 0.410766 4.1:+2348624 MS.gene06138:CDS
GCACCAAAGTTAGCGAAATC+AGG 0.416566 4.1:+2345913 MS.gene06138:CDS
GATCCTGATTTCGCTAACTT+TGG 0.426719 4.1:-2345916 None:intergenic
CCTTGTAAACTCAGAGTTCT+GGG 0.428484 4.1:+2349279 MS.gene06138:CDS
GGAGGACTTGCTGTCGGAAT+GGG 0.436199 4.1:+2347560 MS.gene06138:CDS
GTTTAACTACTTCAAATCCT+AGG 0.438117 4.1:+2349765 MS.gene06138:CDS
AATTGAAGTTCAAAACAATT+GGG 0.458526 4.1:+2349426 MS.gene06138:CDS
ATCAGCATTGGCAGGAGAAT+GGG 0.461506 4.1:+2347589 MS.gene06138:CDS
ACCAGAAGTCAAAGCAAAAG+AGG 0.466634 4.1:+2349555 MS.gene06138:CDS
CAAGACGCGGTGGCCTCTGG+CGG 0.471405 4.1:+2349727 MS.gene06138:CDS
TATCAGCATTGGCAGGAGAA+TGG 0.471652 4.1:+2347588 MS.gene06138:CDS
TGCATATATCCTATCTGGGC+TGG 0.472223 4.1:+2347836 MS.gene06138:CDS
TACAAGTAAAGAGGACTCAT+TGG 0.473626 4.1:+2348427 MS.gene06138:CDS
GAGGGTTTAACAGAGGATTA+GGG 0.474453 4.1:+2347525 MS.gene06138:CDS
AAAACATGTCTCTTCTCAGC+TGG 0.479127 4.1:-2349094 None:intergenic
CCCAGAACTCTGAGTTTACA+AGG 0.479823 4.1:-2349279 None:intergenic
ACAAAATGCTTAACTATCCA+TGG 0.482446 4.1:+2348575 MS.gene06138:CDS
AAGAATTATGTCAAAGTAAG+CGG 0.491923 4.1:+2348598 MS.gene06138:CDS
TGGAGGACTTGCTGTCGGAA+TGG 0.492246 4.1:+2347559 MS.gene06138:CDS
CACCGCGTCTTGCTGTTCAA+GGG 0.498901 4.1:-2349716 None:intergenic
GGTTTGTAGTAAACATGAGC+AGG 0.510304 4.1:-2349535 None:intergenic
AACTCAGAGTTCTGGGAGAT+CGG 0.510626 4.1:+2349286 MS.gene06138:CDS
AAATCCTCTCCAGCCCAGAT+AGG 0.512204 4.1:-2347845 None:intergenic
AGAATTATGTCAAAGTAAGC+GGG 0.515041 4.1:+2348599 MS.gene06138:CDS
CATTACTTTCATCTCTTGGA+CGG 0.515706 4.1:-2349312 None:intergenic
ATCTGTAGCCACTGTAAACT+GGG 0.516939 4.1:-2348391 None:intergenic
AAGACGCGGTGGCCTCTGGC+GGG 0.520846 4.1:+2349728 MS.gene06138:CDS
AGTAATGATGATCATCCTAA+AGG 0.524199 4.1:+2349328 MS.gene06138:CDS
ACTTTGACATAATTCTTCCA+TGG 0.530519 4.1:-2348592 None:intergenic
ACCGCGTCTTGCTGTTCAAG+GGG 0.530520 4.1:-2349715 None:intergenic
GGAAAGACTTCTATCCATGA+AGG 0.532105 4.1:+2345966 MS.gene06138:CDS
ACACGGAACCCATATTCATA+AGG 0.533524 4.1:-2347689 None:intergenic
TGTTGAATCTACAAGTAAAG+AGG 0.534833 4.1:+2348418 MS.gene06138:CDS
GTAGTTGGGATTTGCTGTGT+GGG 0.535344 4.1:+2348534 MS.gene06138:intron
CTTAAGAGGGTAGGTTCCGA+AGG 0.535826 4.1:+2349127 MS.gene06138:CDS
CAGGGGCAACTCTGAACAGA+GGG 0.539129 4.1:+2347507 MS.gene06138:intron
TGCTTGTGAAACAAATGTCT+TGG 0.539539 4.1:+2349512 MS.gene06138:CDS
CTCAATGAGCTTAAGAGGGT+AGG 0.551849 4.1:+2349118 MS.gene06138:CDS
CACTTAGAGACTTGTACTCT+AGG 0.557832 4.1:-2349381 None:intergenic
GTCGTCTTTGAATTCAGTAT+AGG 0.562228 4.1:+2346243 MS.gene06138:CDS
CTGGGTCATCAGCAGCAGCT+TGG 0.563319 4.1:-2348373 None:intergenic
AATGGGAGAGTTATCAGCAT+TGG 0.564616 4.1:+2347577 MS.gene06138:CDS
TGTAGTTGGGATTTGCTGTG+TGG 0.567271 4.1:+2348533 MS.gene06138:intron
TTCTGATAGAATTTGTAGCA+AGG 0.570985 4.1:+2349635 MS.gene06138:CDS
ACATTGTGCATTCATGGTCA+TGG 0.573321 4.1:+2348630 MS.gene06138:CDS
AAATGGGTCGTTCTGATCCA+AGG 0.574359 4.1:+2346103 MS.gene06138:CDS
TATCTGCATATATCCTATCT+GGG 0.575447 4.1:+2347832 MS.gene06138:CDS
GGATTAGGGACATTGTCAGC+TGG 0.577735 4.1:+2347539 MS.gene06138:CDS
GGAGAGTTATCAGCATTGGC+AGG 0.580507 4.1:+2347581 MS.gene06138:CDS
AGAACAGGAAGAATCTAAGA+TGG 0.582967 4.1:+2346035 MS.gene06138:CDS
TCCTAAAGGCCTATTTCACA+TGG 0.586405 4.1:+2349342 MS.gene06138:CDS
ATGAAGGGTGGTGATCATCA+TGG 0.589330 4.1:+2345982 MS.gene06138:CDS
ACGGTATCTGGTTATCATAG+TGG 0.592869 4.1:+2347737 MS.gene06138:CDS
AGAGTGACGGCTAAAATCGA+AGG 0.594752 4.1:-2346196 None:intergenic
TTCATGGTCATGGCTATGCA+TGG 0.595719 4.1:+2348640 MS.gene06138:CDS
CTACCCTCTTAAGCTCATTG+AGG 0.600615 4.1:-2349117 None:intergenic
TCAGCTGGAGGACTTGCTGT+CGG 0.601708 4.1:+2347554 MS.gene06138:CDS
GGTGTTGCAACATCTTTGGA+AGG 0.606641 4.1:+2347896 MS.gene06138:CDS
GAAAGACTTCTATCCATGAA+GGG 0.612843 4.1:+2345967 MS.gene06138:CDS
TTTCCTCAATGAGCTTAAGA+GGG 0.626391 4.1:+2349114 MS.gene06138:CDS
ATATCCTATCTGGGCTGGAG+AGG 0.638574 4.1:+2347841 MS.gene06138:CDS
GAATTCAAAGACGACGACGA+CGG 0.642329 4.1:-2346235 None:intergenic
TGGCAATAGGAGGCACAGCA+TGG 0.643902 4.1:-2349480 None:intergenic
GAGTGACGGCTAAAATCGAA+GGG 0.657783 4.1:-2346195 None:intergenic
GCAGGGGCAACTCTGAACAG+AGG 0.659233 4.1:+2347506 MS.gene06138:intron
TTAGGGACATTGTCAGCTGG+AGG 0.660740 4.1:+2347542 MS.gene06138:CDS
CTGAACAGAGGGTTTAACAG+AGG 0.665152 4.1:+2347518 MS.gene06138:CDS
TAATTGTGTAGAATACAAGA+AGG 0.665618 4.1:+2348328 MS.gene06138:CDS
GAATTATGTCAAAGTAAGCG+GGG 0.667762 4.1:+2348600 MS.gene06138:CDS
GAATAGCCCAAACAGAGTGA+CGG 0.668186 4.1:-2346209 None:intergenic
CCGCGTCTTGCTGTTCAAGG+GGG 0.674384 4.1:-2349714 None:intergenic
CCTTGAACAGCAAGACGCGG+TGG 0.679970 4.1:+2349717 MS.gene06138:CDS
GCTGTGTGGGAACCACCTCA+TGG 0.682126 4.1:+2348547 MS.gene06138:CDS
AATAAGTAATCAAGAACACA+CGG 0.696265 4.1:-2347706 None:intergenic
GCTGATGACCCAGTTTACAG+TGG 0.697546 4.1:+2348383 MS.gene06138:CDS
AGACTTCTATCCATGAAGGG+TGG 0.700795 4.1:+2345970 MS.gene06138:CDS
AAGATGGAGAAACTAGACAG+AGG 0.705496 4.1:+2349187 MS.gene06138:CDS
TTTGCTGTTTGATGTACACG+AGG 0.709942 4.1:+2349213 MS.gene06138:CDS
AGAACTCTGAGTTTACAAGG+AGG 0.792854 4.1:-2349276 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATTATTTGATTAAG+TGG + chr4.1:2346892-2346911 MS.gene06138:intron 10.0%
!! AATTAATTATTTGATTAAGT+GGG + chr4.1:2346893-2346912 MS.gene06138:intron 10.0%
!! AATTTGATATTTCGATAAAT+TGG + chr4.1:2346809-2346828 MS.gene06138:intron 15.0%
!! ATTTGATATTTCGATAAATT+GGG + chr4.1:2346810-2346829 MS.gene06138:intron 15.0%
!!! AAAATGTACATTAAAGTTTT+TGG + chr4.1:2348799-2348818 MS.gene06138:intron 15.0%
!!! TCTTTTGATAAAAAATTTCA+CGG + chr4.1:2347874-2347893 MS.gene06138:CDS 15.0%
!!! TTATTTTGATCATTGATTAA+TGG + chr4.1:2346432-2346451 MS.gene06138:intron 15.0%
!!! TTCTTTAAGAAAAATCAAAA+GGG - chr4.1:2346175-2346194 None:intergenic 15.0%
!! AATTGAAGTTCAAAACAATT+GGG + chr4.1:2349426-2349445 MS.gene06138:CDS 20.0%
!! ACATCTTTAATACAAAATGT+TGG + chr4.1:2347434-2347453 MS.gene06138:intron 20.0%
!! ATTAATTACACATGAAAAGA+GGG - chr4.1:2347160-2347179 None:intergenic 20.0%
!! TTAAAACTATGAAATTGACA+TGG + chr4.1:2348871-2348890 MS.gene06138:intron 20.0%
!! TTGATTAATGGAAATAAGTA+CGG + chr4.1:2346444-2346463 MS.gene06138:intron 20.0%
!! TTTGATATTTCGATAAATTG+GGG + chr4.1:2346811-2346830 MS.gene06138:intron 20.0%
!!! ATAGTTTTAATCACAAATGA+TGG - chr4.1:2348861-2348880 None:intergenic 20.0%
!!! ATTTTATGATCAAAATGCAA+TGG + chr4.1:2347477-2347496 MS.gene06138:intron 20.0%
!!! CTTTTGATAAAAAATTTCAC+GGG + chr4.1:2347875-2347894 MS.gene06138:CDS 20.0%
!!! GTTCTTTAAGAAAAATCAAA+AGG - chr4.1:2346176-2346195 None:intergenic 20.0%
!!! TCTTTTCTGTAACATTTTTT+TGG + chr4.1:2348705-2348724 MS.gene06138:intron 20.0%
!!! TTTTGTATTAAAGATGTTTC+AGG - chr4.1:2347431-2347450 None:intergenic 20.0%
! AAAAATCAAAAGGGAGATAA+GGG - chr4.1:2346166-2346185 None:intergenic 25.0%
! AAAACCACTAAAGTAGTATT+AGG - chr4.1:2347231-2347250 None:intergenic 25.0%
! AAGAATTATGTCAAAGTAAG+CGG + chr4.1:2348598-2348617 MS.gene06138:CDS 25.0%
! AAGTATATAGAAAAAGACAC+AGG + chr4.1:2347322-2347341 MS.gene06138:intron 25.0%
! AATAAGTAATCAAGAACACA+CGG - chr4.1:2347709-2347728 None:intergenic 25.0%
! AATGTTGTGTTTACAACAAT+TGG + chr4.1:2347088-2347107 MS.gene06138:intron 25.0%
! AATTATTTGATTAAGTGGGT+CGG + chr4.1:2346897-2346916 MS.gene06138:intron 25.0%
! AGATAGATAGTACAAAGAAA+AGG + chr4.1:2346495-2346514 MS.gene06138:intron 25.0%
! ATGACACACTAAAAATATAC+AGG - chr4.1:2348761-2348780 None:intergenic 25.0%
! ATTATCAGTACATTCATTGT+TGG + chr4.1:2347626-2347645 MS.gene06138:intron 25.0%
! ATTTGCGGATACATAAAAAA+TGG - chr4.1:2348098-2348117 None:intergenic 25.0%
! CAATTGAAGTTCAAAACAAT+TGG + chr4.1:2349425-2349444 MS.gene06138:CDS 25.0%
! GATTAATTACACATGAAAAG+AGG - chr4.1:2347161-2347180 None:intergenic 25.0%
! GATTACTTATTGCTACATTA+CGG + chr4.1:2347718-2347737 MS.gene06138:CDS 25.0%
! GTTACTATTACATTTAGTGT+AGG + chr4.1:2348003-2348022 MS.gene06138:intron 25.0%
! TAAGTTAAAATCCAGTCAAA+TGG - chr4.1:2346415-2346434 None:intergenic 25.0%
! TAATTGTGTAGAATACAAGA+AGG + chr4.1:2348328-2348347 MS.gene06138:CDS 25.0%
! TCTTGTATTCTACACAATTA+AGG - chr4.1:2348328-2348347 None:intergenic 25.0%
! TGGAAACAAAGTAAAAAAGA+TGG + chr4.1:2349171-2349190 MS.gene06138:CDS 25.0%
! TTAGTAGTTTATGGTATTTG+CGG - chr4.1:2348113-2348132 None:intergenic 25.0%
! TTATACTTTAGCTGAGAAAA+AGG + chr4.1:2345945-2345964 MS.gene06138:CDS 25.0%
! TTGATATTTCGATAAATTGG+GGG + chr4.1:2346812-2346831 MS.gene06138:intron 25.0%
!!! ATCATTTTTGCTGCTAAAAT+GGG + chr4.1:2346129-2346148 MS.gene06138:CDS 25.0%
AACGTTATTCTGCTAAATCA+CGG + chr4.1:2348212-2348231 MS.gene06138:intron 30.0%
AAGTACGGTATTGTTTGATA+GGG + chr4.1:2346459-2346478 MS.gene06138:intron 30.0%
AATTACTTATGCAGAAGCAA+TGG - chr4.1:2347281-2347300 None:intergenic 30.0%
AATTCGTCCTTGAATTTACA+CGG - chr4.1:2346853-2346872 None:intergenic 30.0%
AATTGCAAACAACGTGTTAT+TGG - chr4.1:2346297-2346316 None:intergenic 30.0%
ACAAAATGCTTAACTATCCA+TGG + chr4.1:2348575-2348594 MS.gene06138:CDS 30.0%
ACATCCATTGAACAATTACA+TGG - chr4.1:2347977-2347996 None:intergenic 30.0%
ACCATAAACTACTAAAGTTC+AGG + chr4.1:2348118-2348137 MS.gene06138:intron 30.0%
ACCTGAACTTTAGTAGTTTA+TGG - chr4.1:2348122-2348141 None:intergenic 30.0%
ACTTTGACATAATTCTTCCA+TGG - chr4.1:2348595-2348614 None:intergenic 30.0%
AGAATTATGTCAAAGTAAGC+GGG + chr4.1:2348599-2348618 MS.gene06138:CDS 30.0%
AGTAATGATGATCATCCTAA+AGG + chr4.1:2349328-2349347 MS.gene06138:CDS 30.0%
AGTACCATGTAATTGTTCAA+TGG + chr4.1:2347970-2347989 MS.gene06138:intron 30.0%
ATAGCCTAATACTACTTTAG+TGG + chr4.1:2347224-2347243 MS.gene06138:intron 30.0%
ATATCTGCATATATCCTATC+TGG + chr4.1:2347831-2347850 MS.gene06138:CDS 30.0%
ATGGAATTATCCTAAAGCAT+TGG + chr4.1:2348890-2348909 MS.gene06138:intron 30.0%
ATGTGTTTGTGATTGTAGTT+GGG + chr4.1:2348520-2348539 MS.gene06138:intron 30.0%
ATTATTTGATTAAGTGGGTC+GGG + chr4.1:2346898-2346917 MS.gene06138:intron 30.0%
ATTCATAAGGCTTCAAAGTT+GGG - chr4.1:2347679-2347698 None:intergenic 30.0%
CAAACACATAATTGACAGTA+CGG - chr4.1:2346359-2346378 None:intergenic 30.0%
GAAAAATCAAAAGGGAGATA+AGG - chr4.1:2346167-2346186 None:intergenic 30.0%
GTTACTCAATTCCATACATT+TGG - chr4.1:2348243-2348262 None:intergenic 30.0%
TAAGTACGGTATTGTTTGAT+AGG + chr4.1:2346458-2346477 MS.gene06138:intron 30.0%
TAATATAGTCCCAATGCTTT+AGG - chr4.1:2348903-2348922 None:intergenic 30.0%
TATCTGCATATATCCTATCT+GGG + chr4.1:2347832-2347851 MS.gene06138:CDS 30.0%
TATCTTCATCCATGTGAAAT+AGG - chr4.1:2349354-2349373 None:intergenic 30.0%
TATTCATAAGGCTTCAAAGT+TGG - chr4.1:2347680-2347699 None:intergenic 30.0%
TCAATTCCATACATTTGGAT+TGG - chr4.1:2348238-2348257 None:intergenic 30.0%
TCATCATTACTTTCATCTCT+TGG - chr4.1:2349319-2349338 None:intergenic 30.0%
TGTAATTGTTCAATGGATGT+AGG + chr4.1:2347977-2347996 MS.gene06138:intron 30.0%
TGTTGAATCTACAAGTAAAG+AGG + chr4.1:2348418-2348437 MS.gene06138:CDS 30.0%
TGTTGTAAACACAACATTCA+TGG - chr4.1:2347086-2347105 None:intergenic 30.0%
TTCTGATAGAATTTGTAGCA+AGG + chr4.1:2349635-2349654 MS.gene06138:CDS 30.0%
TTTAATCACAAATGATGGCT+GGG - chr4.1:2348856-2348875 None:intergenic 30.0%
! AAAATGCAATGGAATTTTGC+AGG + chr4.1:2347488-2347507 MS.gene06138:intron 30.0%
! AAATGCAATGGAATTTTGCA+GGG + chr4.1:2347489-2347508 MS.gene06138:intron 30.0%
! ACGTTGTTTGCAATTTTCAT+TGG + chr4.1:2346302-2346321 MS.gene06138:intron 30.0%
! AGCATTTTGTATTTACCATG+AGG - chr4.1:2348565-2348584 None:intergenic 30.0%
! ATTTTGTATTTACCATGAGG+TGG - chr4.1:2348562-2348581 None:intergenic 30.0%
! GATAAATTGGGGGAAAATTT+TGG + chr4.1:2346822-2346841 MS.gene06138:intron 30.0%
! TGGAATTATCCTAAAGCATT+GGG + chr4.1:2348891-2348910 MS.gene06138:intron 30.0%
! TTGCTGAACTTACATTTTCA+GGG + chr4.1:2348288-2348307 MS.gene06138:intron 30.0%
! TTTCACAAGCATGTTTTCAT+TGG - chr4.1:2349503-2349522 None:intergenic 30.0%
! TTTTAATCACAAATGATGGC+TGG - chr4.1:2348857-2348876 None:intergenic 30.0%
!! ACTTTGAAGCCTTATGAATA+TGG + chr4.1:2347680-2347699 MS.gene06138:intron 30.0%
!! ATGCATACTTTCTGAAATTC+AGG + chr4.1:2348663-2348682 MS.gene06138:CDS 30.0%
!! CTTTGAAGCCTTATGAATAT+GGG + chr4.1:2347681-2347700 MS.gene06138:intron 30.0%
!! GATCATTTTTGCTGCTAAAA+TGG + chr4.1:2346128-2346147 MS.gene06138:CDS 30.0%
!! TAGAAGTGTTGTCACAAATA+GGG + chr4.1:2348921-2348940 MS.gene06138:intron 30.0%
!! TTAGAAGTGTTGTCACAAAT+AGG + chr4.1:2348920-2348939 MS.gene06138:intron 30.0%
AAATTCGTCCTTGAATTTGC+AGG + chr4.1:2346534-2346553 MS.gene06138:intron 35.0%
AATTCGTCCTTGAATTTGCA+GGG + chr4.1:2346535-2346554 MS.gene06138:intron 35.0%
ACTACTAAAGTTCAGGTCTT+TGG + chr4.1:2348125-2348144 MS.gene06138:intron 35.0%
AGAACAGGAAGAATCTAAGA+TGG + chr4.1:2346035-2346054 MS.gene06138:CDS 35.0%
AGCAAGGCTTCAAAATTTAG+TGG + chr4.1:2349651-2349670 MS.gene06138:CDS 35.0%
AGTGTCAAAAGCAAAGCAAA+TGG - chr4.1:2346980-2346999 None:intergenic 35.0%
ATCACTACAGAGATATTGGA+TGG + chr4.1:2346748-2346767 MS.gene06138:intron 35.0%
ATGGAAGGAATGAGTAAAAG+AGG + chr4.1:2346590-2346609 MS.gene06138:intron 35.0%
CAACTACAATCACAAACACA+TGG - chr4.1:2348521-2348540 None:intergenic 35.0%
CATCATGGTTATTCTCGTAT+AGG + chr4.1:2345997-2346016 MS.gene06138:CDS 35.0%
CATGTGTTTGTGATTGTAGT+TGG + chr4.1:2348519-2348538 MS.gene06138:intron 35.0%
CATTACTTTCATCTCTTGGA+CGG - chr4.1:2349315-2349334 None:intergenic 35.0%
CTGAAAATGTAAGTTCAGCA+AGG - chr4.1:2348289-2348308 None:intergenic 35.0%
GAAAGACTTCTATCCATGAA+GGG + chr4.1:2345967-2345986 MS.gene06138:CDS 35.0%
GAATTATGTCAAAGTAAGCG+GGG + chr4.1:2348600-2348619 MS.gene06138:CDS 35.0%
GAGCTGTCTTCTTGATATAT+AGG + chr4.1:2349069-2349088 MS.gene06138:intron 35.0%
GAGTAAAAGAGGGGTAAATT+TGG + chr4.1:2346601-2346620 MS.gene06138:intron 35.0%
GGTATTGTTTGATAGGGTTA+GGG + chr4.1:2346465-2346484 MS.gene06138:intron 35.0%
GGTTATTCTCGTATAGGAAA+TGG + chr4.1:2346003-2346022 MS.gene06138:CDS 35.0%
GTATTGTTTGATAGGGTTAG+GGG + chr4.1:2346466-2346485 MS.gene06138:intron 35.0%
GTCGTCTTTGAATTCAGTAT+AGG + chr4.1:2346243-2346262 MS.gene06138:CDS 35.0%
GTGGACTCATTTGAAGAATT+GGG + chr4.1:2349670-2349689 MS.gene06138:CDS 35.0%
TACAAGTAAAGAGGACTCAT+TGG + chr4.1:2348427-2348446 MS.gene06138:CDS 35.0%
TATTGCTACATTACGGTATC+TGG + chr4.1:2347725-2347744 MS.gene06138:CDS 35.0%
TGCATAACAATGTCATGTCT+CGG + chr4.1:2347056-2347075 MS.gene06138:intron 35.0%
TGCTTGTGAAACAAATGTCT+TGG + chr4.1:2349512-2349531 MS.gene06138:CDS 35.0%
TGGAAGGAATGAGTAAAAGA+GGG + chr4.1:2346591-2346610 MS.gene06138:intron 35.0%
TGTAGGATAGCTACTGTAAT+AGG + chr4.1:2348020-2348039 MS.gene06138:intron 35.0%
TTGTTGCGTTTCCATCAAAT+CGG + chr4.1:2346656-2346675 MS.gene06138:intron 35.0%
TTTCCTCAATGAGCTTAAGA+GGG + chr4.1:2349114-2349133 MS.gene06138:CDS 35.0%
! AATGCAATGGAATTTTGCAG+GGG + chr4.1:2347490-2347509 MS.gene06138:intron 35.0%
! AGATTTTTGCTCATTGCACT+TGG + chr4.1:2347785-2347804 MS.gene06138:CDS 35.0%
! AGCATGTTTTCATTGGCAAT+AGG - chr4.1:2349496-2349515 None:intergenic 35.0%
! AGCTTGGTAAGTCAGAATTT+TGG - chr4.1:2348360-2348379 None:intergenic 35.0%
! AGTGGACTCATTTGAAGAAT+TGG + chr4.1:2349669-2349688 MS.gene06138:CDS 35.0%
! ATGGACGCTTGTTAAATTCA+GGG + chr4.1:2346783-2346802 MS.gene06138:intron 35.0%
! ATGTTTTCATTGGCAATAGG+AGG - chr4.1:2349493-2349512 None:intergenic 35.0%
! CAATTATGAGAAAGCGTGTT+TGG + chr4.1:2346934-2346953 MS.gene06138:intron 35.0%
! CTTGCTGAACTTACATTTTC+AGG + chr4.1:2348287-2348306 MS.gene06138:intron 35.0%
! TAAAGTTCAGGTCTTTGGAA+TGG + chr4.1:2348130-2348149 MS.gene06138:intron 35.0%
! TCTAAGACATTGTGCATTCA+TGG + chr4.1:2348624-2348643 MS.gene06138:CDS 35.0%
! TGCTGAACTTACATTTTCAG+GGG + chr4.1:2348289-2348308 MS.gene06138:intron 35.0%
! TGGTAAGTCAGAATTTTGGA+TGG - chr4.1:2348356-2348375 None:intergenic 35.0%
! TTTTCCTCAATGAGCTTAAG+AGG + chr4.1:2349113-2349132 MS.gene06138:CDS 35.0%
!! AAAGTTCAGGTCTTTGGAAT+GGG + chr4.1:2348131-2348150 MS.gene06138:intron 35.0%
!! AAATGGTTTGCTACAAGAAC+AGG + chr4.1:2346020-2346039 MS.gene06138:CDS 35.0%
!! AGAAGTGTTGTCACAAATAG+GGG + chr4.1:2348922-2348941 MS.gene06138:intron 35.0%
!! GATGTTTCAGGTGTTACTTA+CGG - chr4.1:2347419-2347438 None:intergenic 35.0%
!!! ATTGGTTTTGCCATCCAAAA+AGG + chr4.1:2347106-2347125 MS.gene06138:intron 35.0%
!!! TTTTGACACTTTTGACTTCC+TGG + chr4.1:2346990-2347009 MS.gene06138:intron 35.0%
AAAACATGTCTCTTCTCAGC+TGG - chr4.1:2349097-2349116 None:intergenic 40.0%
AACAAGTCCCTGCAAATTCA+AGG - chr4.1:2346545-2346564 None:intergenic 40.0%
AAGATGGAGAAACTAGACAG+AGG + chr4.1:2349187-2349206 MS.gene06138:CDS 40.0%
AATGGGAGAGTTATCAGCAT+TGG + chr4.1:2347577-2347596 MS.gene06138:CDS 40.0%
ACACGGAACCCATATTCATA+AGG - chr4.1:2347692-2347711 None:intergenic 40.0%
ACATTGTGCATTCATGGTCA+TGG + chr4.1:2348630-2348649 MS.gene06138:CDS 40.0%
ACCAGAAGTCAAAGCAAAAG+AGG + chr4.1:2349555-2349574 MS.gene06138:CDS 40.0%
ACGGTATCTGGTTATCATAG+TGG + chr4.1:2347737-2347756 MS.gene06138:CDS 40.0%
ACTACAGAGATATTGGATGG+AGG + chr4.1:2346751-2346770 MS.gene06138:intron 40.0%
AGAACTCTGAGTTTACAAGG+AGG - chr4.1:2349279-2349298 None:intergenic 40.0%
AGACACAGGTATATGACATG+TGG + chr4.1:2347336-2347355 MS.gene06138:intron 40.0%
AGAGGGTTTAACAGAGGATT+AGG + chr4.1:2347524-2347543 MS.gene06138:CDS 40.0%
ATCTGTAGCCACTGTAAACT+GGG - chr4.1:2348394-2348413 None:intergenic 40.0%
ATGTGTCTGAGTGAAATGTG+AGG + chr4.1:2346567-2346586 MS.gene06138:intron 40.0%
CACTTAGAGACTTGTACTCT+AGG - chr4.1:2349384-2349403 None:intergenic 40.0%
CAGCATCACTACAGAGATAT+TGG + chr4.1:2346744-2346763 MS.gene06138:intron 40.0%
CCTTGTAAACTCAGAGTTCT+GGG + chr4.1:2349279-2349298 MS.gene06138:CDS 40.0%
CGGTATTGTTTGATAGGGTT+AGG + chr4.1:2346464-2346483 MS.gene06138:intron 40.0%
CTACAGAGATATTGGATGGA+GGG + chr4.1:2346752-2346771 MS.gene06138:intron 40.0%
GAGGGTTTAACAGAGGATTA+GGG + chr4.1:2347525-2347544 MS.gene06138:CDS 40.0%
GATCCTGATTTCGCTAACTT+TGG - chr4.1:2345919-2345938 None:intergenic 40.0%
GCAGCAAAAATGATCTTCCT+TGG - chr4.1:2346123-2346142 None:intergenic 40.0%
GGAAAGACTTCTATCCATGA+AGG + chr4.1:2345966-2345985 MS.gene06138:CDS 40.0%
GGAAGGAATGAGTAAAAGAG+GGG + chr4.1:2346592-2346611 MS.gene06138:intron 40.0%
GGGTGAGAAAGCTAACTTTA+AGG + chr4.1:2349690-2349709 MS.gene06138:CDS 40.0%
GGTTTGTAGTAAACATGAGC+AGG - chr4.1:2349538-2349557 None:intergenic 40.0%
TCCATGTGAAATAGGCCTTT+AGG - chr4.1:2349346-2349365 None:intergenic 40.0%
TCCTAAAGGCCTATTTCACA+TGG + chr4.1:2349342-2349361 MS.gene06138:CDS 40.0%
TCCTTGTAAACTCAGAGTTC+TGG + chr4.1:2349278-2349297 MS.gene06138:CDS 40.0%
TGCTAAAATGGGTCTTGCTT+TGG + chr4.1:2346140-2346159 MS.gene06138:CDS 40.0%
! GATGGACGCTTGTTAAATTC+AGG + chr4.1:2346782-2346801 MS.gene06138:intron 40.0%
! GCTGAAAAAGCATGGGAAAT+GGG + chr4.1:2346087-2346106 MS.gene06138:CDS 40.0%
! TGCTGAAAAAGCATGGGAAA+TGG + chr4.1:2346086-2346105 MS.gene06138:CDS 40.0%
! TTTTAGCCGTCACTCTGTTT+GGG + chr4.1:2346203-2346222 MS.gene06138:CDS 40.0%
!! AAGTTCAGGTCTTTGGAATG+GGG + chr4.1:2348132-2348151 MS.gene06138:intron 40.0%
!! AATTGGGGGAAAATTTTGGC+TGG + chr4.1:2346826-2346845 MS.gene06138:intron 40.0%
!! ATTTTAGCCGTCACTCTGTT+TGG + chr4.1:2346202-2346221 MS.gene06138:CDS 40.0%
!! TCCTCTTTTGCTTTGACTTC+TGG - chr4.1:2349559-2349578 None:intergenic 40.0%
!! TTTGCTGTTTGATGTACACG+AGG + chr4.1:2349213-2349232 MS.gene06138:CDS 40.0%
!!! TTTTGACTTCCTGGCATTAG+AGG + chr4.1:2346999-2347018 MS.gene06138:intron 40.0%
AAATGGGTCGTTCTGATCCA+AGG + chr4.1:2346103-2346122 MS.gene06138:CDS 45.0%
ACACATGAAAAGAGGGCAAG+CGG - chr4.1:2347153-2347172 None:intergenic 45.0%
ACCACTCTTCACCATTTGAC+TGG + chr4.1:2346401-2346420 MS.gene06138:intron 45.0%
ACCTTTCACGTAGGGTTCAA+AGG + chr4.1:2347028-2347047 MS.gene06138:intron 45.0%
AGACTTCTATCCATGAAGGG+TGG + chr4.1:2345970-2345989 MS.gene06138:CDS 45.0%
AGAGTGACGGCTAAAATCGA+AGG - chr4.1:2346199-2346218 None:intergenic 45.0%
AGCTCGTTGCTGAAAAAGCA+TGG + chr4.1:2346079-2346098 MS.gene06138:CDS 45.0%
ATGAAGGGTGGTGATCATCA+TGG + chr4.1:2345982-2346001 MS.gene06138:CDS 45.0%
ATGATGATCACCACCCTTCA+TGG - chr4.1:2345983-2346002 None:intergenic 45.0%
CCCAGAACTCTGAGTTTACA+AGG - chr4.1:2349282-2349301 None:intergenic 45.0%
CCTTTCACGTAGGGTTCAAA+GGG + chr4.1:2347029-2347048 MS.gene06138:intron 45.0%
CTACCCTCTTAAGCTCATTG+AGG - chr4.1:2349120-2349139 None:intergenic 45.0%
CTCAATGAGCTTAAGAGGGT+AGG + chr4.1:2349118-2349137 MS.gene06138:CDS 45.0%
CTGAACAGAGGGTTTAACAG+AGG + chr4.1:2347518-2347537 MS.gene06138:CDS 45.0%
CTTTCACGTAGGGTTCAAAG+GGG + chr4.1:2347030-2347049 MS.gene06138:intron 45.0%
GAATAGCCCAAACAGAGTGA+CGG - chr4.1:2346212-2346231 None:intergenic 45.0%
GAATTCAAAGACGACGACGA+CGG - chr4.1:2346238-2346257 None:intergenic 45.0%
GAGTGAAATGTGAGGATGGA+AGG + chr4.1:2346575-2346594 MS.gene06138:intron 45.0%
GAGTGACGGCTAAAATCGAA+GGG - chr4.1:2346198-2346217 None:intergenic 45.0%
GATCTGTAGCCACTGTAAAC+TGG - chr4.1:2348395-2348414 None:intergenic 45.0%
GCACCAAAGTTAGCGAAATC+AGG + chr4.1:2345913-2345932 MS.gene06138:CDS 45.0%
GTCTGAGTGAAATGTGAGGA+TGG + chr4.1:2346571-2346590 MS.gene06138:intron 45.0%
TACAACACAGCACAACATGC+AGG + chr4.1:2346712-2346731 MS.gene06138:intron 45.0%
TCACGGCCAATCCAAATGTA+TGG + chr4.1:2348229-2348248 MS.gene06138:intron 45.0%
TCCAGTCAAATGGTGAAGAG+TGG - chr4.1:2346405-2346424 None:intergenic 45.0%
TGCATATATCCTATCTGGGC+TGG + chr4.1:2347836-2347855 MS.gene06138:CDS 45.0%
TGGATGGAGGGATGAATTGA+TGG + chr4.1:2346764-2346783 MS.gene06138:intron 45.0%
TTCATGGTCATGGCTATGCA+TGG + chr4.1:2348640-2348659 MS.gene06138:CDS 45.0%
! GCTCGTTGCTGAAAAAGCAT+GGG + chr4.1:2346080-2346099 MS.gene06138:CDS 45.0%
! GGTGTTGCAACATCTTTGGA+AGG + chr4.1:2347896-2347915 MS.gene06138:CDS 45.0%
!! AACTCAGAGTTCTGGGAGAT+CGG + chr4.1:2349286-2349305 MS.gene06138:CDS 45.0%
!! ACTTGGTGCTGCTGTATCTT+TGG + chr4.1:2347802-2347821 MS.gene06138:CDS 45.0%
!! AGTTCAGGTCTTTGGAATGG+GGG + chr4.1:2348133-2348152 MS.gene06138:intron 45.0%
!! ATCAGCATTGGCAGGAGAAT+GGG + chr4.1:2347589-2347608 MS.gene06138:CDS 45.0%
!! CTTGGTGCTGCTGTATCTTT+GGG + chr4.1:2347803-2347822 MS.gene06138:CDS 45.0%
!! GTAGTTGGGATTTGCTGTGT+GGG + chr4.1:2348534-2348553 MS.gene06138:intron 45.0%
!! GTGTACAAGGACCGATTTGA+TGG - chr4.1:2346670-2346689 None:intergenic 45.0%
!! TATCAGCATTGGCAGGAGAA+TGG + chr4.1:2347588-2347607 MS.gene06138:CDS 45.0%
!! TGTAGTTGGGATTTGCTGTG+TGG + chr4.1:2348533-2348552 MS.gene06138:intron 45.0%
!!! TATCTATAAAAAAAATATTT+TGG + chr4.1:2347188-2347207 MS.gene06138:intron 5.0%
AAATCCTCTCCAGCCCAGAT+AGG - chr4.1:2347848-2347867 None:intergenic 50.0%
ACACAGCACAACATGCAGGA+CGG + chr4.1:2346716-2346735 MS.gene06138:intron 50.0%
AGGCTGTTGACCTTTCACGT+AGG + chr4.1:2347019-2347038 MS.gene06138:intron 50.0%
CAAATCGGTCCTTGTACACG+TGG + chr4.1:2346671-2346690 MS.gene06138:intron 50.0%
CACATGAAAAGAGGGCAAGC+GGG - chr4.1:2347152-2347171 None:intergenic 50.0%
CCCTTTGAACCCTACGTGAA+AGG - chr4.1:2347032-2347051 None:intergenic 50.0%
CTTAAGAGGGTAGGTTCCGA+AGG + chr4.1:2349127-2349146 MS.gene06138:CDS 50.0%
GCTGATGACCCAGTTTACAG+TGG + chr4.1:2348383-2348402 MS.gene06138:CDS 50.0%
GGATTAGGGACATTGTCAGC+TGG + chr4.1:2347539-2347558 MS.gene06138:CDS 50.0%
GGCTGTTGACCTTTCACGTA+GGG + chr4.1:2347020-2347039 MS.gene06138:intron 50.0%
GGGCAAAAAGTTGCGCAACT+AGG - chr4.1:2347132-2347151 None:intergenic 50.0%
GTCCTTGTACACGTGGTTGA+CGG + chr4.1:2346678-2346697 MS.gene06138:intron 50.0%
TCCTTGTACACGTGGTTGAC+GGG + chr4.1:2346679-2346698 MS.gene06138:intron 50.0%
TTAGGGACATTGTCAGCTGG+AGG + chr4.1:2347542-2347561 MS.gene06138:CDS 50.0%
! ATATCCTATCTGGGCTGGAG+AGG + chr4.1:2347841-2347860 MS.gene06138:CDS 50.0%
! CACGGGTGTTGCAACATCTT+TGG + chr4.1:2347892-2347911 MS.gene06138:CDS 50.0%
! CGCAACTAGGCCTTTTTGGA+TGG - chr4.1:2347119-2347138 None:intergenic 50.0%
! GGCTGGTCCGTGTAAATTCA+AGG + chr4.1:2346843-2346862 MS.gene06138:intron 50.0%
! GTTGCGCAACTAGGCCTTTT+TGG - chr4.1:2347123-2347142 None:intergenic 50.0%
! TTTTGTCCAAAACCCGCCAG+AGG - chr4.1:2349743-2349762 None:intergenic 50.0%
!! GGAGAGTTATCAGCATTGGC+AGG + chr4.1:2347581-2347600 MS.gene06138:CDS 50.0%
!! GTTCAGGTCTTTGGAATGGG+GGG + chr4.1:2348134-2348153 MS.gene06138:intron 50.0%
CAGGGGCAACTCTGAACAGA+GGG + chr4.1:2347507-2347526 MS.gene06138:intron 55.0%
GCGCAACACTCTTGCTCCTT+CGG - chr4.1:2349146-2349165 None:intergenic 55.0%
GGTCAACAGCCTCTAATGCC+AGG - chr4.1:2347011-2347030 None:intergenic 55.0%
TCCCGTCAACCACGTGTACA+AGG - chr4.1:2346683-2346702 None:intergenic 55.0%
! TGGCAATAGGAGGCACAGCA+TGG - chr4.1:2349483-2349502 None:intergenic 55.0%
!! ACCGCGTCTTGCTGTTCAAG+GGG - chr4.1:2349718-2349737 None:intergenic 55.0%
!! CACCGCGTCTTGCTGTTCAA+GGG - chr4.1:2349719-2349738 None:intergenic 55.0%
!! GCAAGAGTGTTGCGCGAACT+TGG + chr4.1:2349151-2349170 MS.gene06138:CDS 55.0%
!! GGAGGACTTGCTGTCGGAAT+GGG + chr4.1:2347560-2347579 MS.gene06138:CDS 55.0%
!! TCAGCTGGAGGACTTGCTGT+CGG + chr4.1:2347554-2347573 MS.gene06138:CDS 55.0%
!! TGGAGGACTTGCTGTCGGAA+TGG + chr4.1:2347559-2347578 MS.gene06138:CDS 55.0%
CCCCCTTGAACAGCAAGACG+CGG + chr4.1:2349714-2349733 MS.gene06138:CDS 60.0%
CCTTGAACAGCAAGACGCGG+TGG + chr4.1:2349717-2349736 MS.gene06138:CDS 60.0%
CTGGGTCATCAGCAGCAGCT+TGG - chr4.1:2348376-2348395 None:intergenic 60.0%
GCAGGGGCAACTCTGAACAG+AGG + chr4.1:2347506-2347525 MS.gene06138:intron 60.0%
GCTGTGTGGGAACCACCTCA+TGG + chr4.1:2348547-2348566 MS.gene06138:CDS 60.0%
!! CCACCGCGTCTTGCTGTTCA+AGG - chr4.1:2349720-2349739 None:intergenic 60.0%
!! CCGCGTCTTGCTGTTCAAGG+GGG - chr4.1:2349717-2349736 None:intergenic 60.0%
AAGACGCGGTGGCCTCTGGC+GGG + chr4.1:2349728-2349747 MS.gene06138:CDS 70.0%
CAAGACGCGGTGGCCTCTGG+CGG + chr4.1:2349727-2349746 MS.gene06138:CDS 70.0%
CAGCAAGACGCGGTGGCCTC+TGG + chr4.1:2349724-2349743 MS.gene06138:CDS 70.0%
!!! CGGTGGCCTCTGGCGGGTTT+TGG + chr4.1:2349734-2349753 MS.gene06138:CDS 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 2345910 2349786 2345910 ID=MS.gene06138
chr4.1 mRNA 2345910 2349786 2345910 ID=MS.gene06138.t1;Parent=MS.gene06138
chr4.1 exon 2345910 2346264 2345910 ID=MS.gene06138.t1.exon1;Parent=MS.gene06138.t1
chr4.1 CDS 2345910 2346264 2345910 ID=cds.MS.gene06138.t1;Parent=MS.gene06138.t1
chr4.1 exon 2347510 2347643 2347510 ID=MS.gene06138.t1.exon2;Parent=MS.gene06138.t1
chr4.1 CDS 2347510 2347643 2347510 ID=cds.MS.gene06138.t1;Parent=MS.gene06138.t1
chr4.1 exon 2347689 2347917 2347689 ID=MS.gene06138.t1.exon3;Parent=MS.gene06138.t1
chr4.1 CDS 2347689 2347917 2347689 ID=cds.MS.gene06138.t1;Parent=MS.gene06138.t1
chr4.1 exon 2348309 2348448 2348309 ID=MS.gene06138.t1.exon4;Parent=MS.gene06138.t1
chr4.1 CDS 2348309 2348448 2348309 ID=cds.MS.gene06138.t1;Parent=MS.gene06138.t1
chr4.1 exon 2348538 2348684 2348538 ID=MS.gene06138.t1.exon5;Parent=MS.gene06138.t1
chr4.1 CDS 2348538 2348684 2348538 ID=cds.MS.gene06138.t1;Parent=MS.gene06138.t1
chr4.1 exon 2349091 2349786 2349091 ID=MS.gene06138.t1.exon6;Parent=MS.gene06138.t1
chr4.1 CDS 2349091 2349786 2349091 ID=cds.MS.gene06138.t1;Parent=MS.gene06138.t1
Gene Sequence

>MS.gene06138

ATGGCACCAAAGTTAGCGAAATCAGGATCATTTCGTTATACTTTAGCTGAGAAAAAGGAAAGACTTCTATCCATGAAGGGTGGTGATCATCATGGTTATTCTCGTATAGGAAATGGTTTGCTACAAGAACAGGAAGAATCTAAGATGGTCAAGTTCAAAAAGATGATGAAGCTCGTTGCTGAAAAAGCATGGGAAATGGGTCGTTCTGATCCAAGGAAGATCATTTTTGCTGCTAAAATGGGTCTTGCTTTGGCCCTTATCTCCCTTTTGATTTTTCTTAAAGAACCCTTCGATTTTAGCCGTCACTCTGTTTGGGCTATTCTCACCGTCGTCGTCGTCTTTGAATTCAGTATAGGTACGTCATTCATATTAATTGTTTTCTGTCCAATAACACGTTGTTTGCAATTTTCATTGGACATAGAGTATTATTTTGAGTGTTGATGTGTCCGTACTGTCAATTATGTGTTTGTGCAAGTGCTTGATACAAAATTACCACTCTTCACCATTTGACTGGATTTTAACTTATTTTGATCATTGATTAATGGAAATAAGTACGGTATTGTTTGATAGGGTTAGGGGATATATAGATAGATAGTACAAAGAAAAGGAAATGAGTAAATCATCAAATTCGTCCTTGAATTTGCAGGGACTTGTTTGATGTGTCTGAGTGAAATGTGAGGATGGAAGGAATGAGTAAAAGAGGGGTAAATTTGGAAAAATTGAAAGTGAAAAGTTAAAACTGAAATTTGTTGCGTTTCCATCAAATCGGTCCTTGTACACGTGGTTGACGGGATGACATGAGTACAACACAGCACAACATGCAGGACGGCATCTCAGCATCACTACAGAGATATTGGATGGAGGGATGAATTGATGGACGCTTGTTAAATTCAGGGACAAATTTGATATTTCGATAAATTGGGGGAAAATTTTGGCTGGTCCGTGTAAATTCAAGGACGAATTTGATGATTTACTCAAAAGAAAATTAATTATTTGATTAAGTGGGTCGGGTCATATTTGAAATCAATTATGAGAAAGCGTGTTTGGATGATCATCATGTTTTTATACCATTTGCTTTGCTTTTGACACTTTTGACTTCCTGGCATTAGAGGCTGTTGACCTTTCACGTAGGGTTCAAAGGGGTCATGCATAACAATGTCATGTCTCGGAAATCCATGAATGTTGTGTTTACAACAATTGGTTTTGCCATCCAAAAAGGCCTAGTTGCGCAACTTTTTGCCCGCTTGCCCTCTTTTCATGTGTAATTAATCTTTGATATATCTATAAAAAAAATATTTTGGATTAAAAAATTAAATAGCCTAATACTACTTTAGTGGTTTTTTTTTTTTTTTTTTGTTAATTATATATCCATTGCTTCTGCATAAGTAATTTTTTGAAGTGTGTTCATCTTGAAGTATATAGAAAAAGACACAGGTATATGACATGTGGACATTGTTAATAATTTCAAAAAATTATTGAATGTAACTACATATGTCGATGTCTTGACCGTAAGTAACACCTGAAACATCTTTAATACAAAATGTTGGAACTTCTAAGCTTTCAATTTATTTTATGATCAAAATGCAATGGAATTTTGCAGGGGCAACTCTGAACAGAGGGTTTAACAGAGGATTAGGGACATTGTCAGCTGGAGGACTTGCTGTCGGAATGGGAGAGTTATCAGCATTGGCAGGAGAATGGGAAGAAGTTATAGTGATTATCAGTACATTCATTGTTGGATTTTGTATTACATATGCAAAATTGTACCCAACTTTGAAGCCTTATGAATATGGGTTCCGTGTGTTCTTGATTACTTATTGCTACATTACGGTATCTGGTTATCATAGTGGCGAATTTCTTGATACATCTATAAGTAGATTTTTGCTCATTGCACTTGGTGCTGCTGTATCTTTGGGAGTTAATATCTGCATATATCCTATCTGGGCTGGAGAGGATTTACATAATCTTTTGATAAAAAATTTCACGGGTGTTGCAACATCTTTGGAAGGTACTTTATTACATTTCTCATGATCACATTTAATTTGTAGTTGCTACATACTAGTACCATGTAATTGTTCAATGGATGTAGGATAGTTACTATTACATTTAGTGTAGGATAGCTACTGTAATAGGATATATTCTATTACATTTTGCGTATAGTTACTACTAAATTAATTTGTATTCACCATTTTTTATGTATCCGCAAATACCATAAACTACTAAAGTTCAGGTCTTTGGAATGGGGGGAGTACTATATGTTATTGTTCTGCTACTTAGTGAATGTTTGAAATCACAGTGACTCAACGTTATTCTGCTAAATCACGGCCAATCCAAATGTATGGAATTGAGTAACTTTGTTTTTTGACAATTGAATAACCTTGCTGAACTTACATTTTCAGGGGTCGTAAATCACTACCTTAATTGTGTAGAATACAAGAAGGTGCCATCCAAAATTCTGACTTACCAAGCTGCTGCTGATGACCCAGTTTACAGTGGCTACAGATCAGCTGTTGAATCTACAAGTAAAGAGGACTCATTGGTATTGTCTACTTCAGTTTTCTGTCTCTTTCATCAATATTTATTTATTTATCATATTTATGACTCATTGCCATGTGTTTGTGATTGTAGTTGGGATTTGCTGTGTGGGAACCACCTCATGGTAAATACAAAATGCTTAACTATCCATGGAAGAATTATGTCAAAGTAAGCGGGGCTCTAAGACATTGTGCATTCATGGTCATGGCTATGCATGGATGCATACTTTCTGAAATTCAGGTACTTCTAATTATCTAAAATCTTTTCTGTAACATTTTTTTGGTTCTCAGTGCAGAGCATATGAAATTTATAACCTGTATATTTTTAGTGTGTCATGTTTCTATTTTCACTGATAAAATGTACATTAAAGTTTTTGGAAATGTATTTTAGAAAGAGATTCAATATCATCCCAGCCATCATTTGTGATTAAAACTATGAAATTGACATGGAATTATCCTAAAGCATTGGGACTATATTAGAAGTGTTGTCACAAATAGGGGCTAAAAGTACAACATTTGTGATTTTGATTTAAAAGTTTGTTTTTATCATAAAAATTATCTCGACATTAAAACATATGCAGTGCACTGAAGCTTCGTATGTTATCTTATCAATCTTGAAAATACTGAGCTGTCTTCTTGATATATAGGCTCCAGCTGAGAAGAGACATGTTTTCCTCAATGAGCTTAAGAGGGTAGGTTCCGAAGGAGCAAGAGTGTTGCGCGAACTTGGAAACAAAGTAAAAAAGATGGAGAAACTAGACAGAGGAGATTTGCTGTTTGATGTACACGAGGCAGCAGAAGAATTACAACAAAAGATCGATAAAAAATCTTACCTCCTTGTAAACTCAGAGTTCTGGGAGATCGGAAACCGTCCAAGAGATGAAAGTAATGATGATCATCCTAAAGGCCTATTTCACATGGATGAAGATAGAAAATTCCTAGAGTACAAGTCTCTAAGTGAAGCTGTACTTGATCTAAGATCAATTGAAGTTCAAAACAATTGGGATGAAAAAACTACAGATAATAATAGTAATAACCATGCTGTGCCTCCTATTGCCAATGAAAACATGCTTGTGAAACAAATGTCTTGGCCTGCTCATGTTTACTACAAACCAGAAGTCAAAGCAAAAGAGGAAGAATCAAAAACTTATGAAAGTGCTAGTTCGTTGTCTCTAACGACATTTACATCACTTCTGATAGAATTTGTAGCAAGGCTTCAAAATTTAGTGGACTCATTTGAAGAATTGGGTGAGAAAGCTAACTTTAAGGACCCCCTTGAACAGCAAGACGCGGTGGCCTCTGGCGGGTTTTGGACAAAATTGTTTAACTACTTCAAATCCTAG
Protein sequence

>MS.gene06138.t1

MAPKLAKSGSFRYTLAEKKERLLSMKGGDHHGYSRIGNGLLQEQEESKMVKFKKMMKLVAEKAWEMGRSDPRKIIFAAKMGLALALISLLIFLKEPFDFSRHSVWAILTVVVVFEFSIGATLNRGFNRGLGTLSAGGLAVGMGELSALAGEWEEVIVIISTFIPYEYGFRVFLITYCYITVSGYHSGEFLDTSISRFLLIALGAAVSLGVNICIYPIWAGEDLHNLLIKNFTGVATSLEGVVNHYLNCVEYKKVPSKILTYQAAADDPVYSGYRSAVESTSKEDSLLGFAVWEPPHGKYKMLNYPWKNYVKVSGALRHCAFMVMAMHGCILSEIQAPAEKRHVFLNELKRVGSEGARVLRELGNKVKKMEKLDRGDLLFDVHEAAEELQQKIDKKSYLLVNSEFWEIGNRPRDESNDDHPKGLFHMDEDRKFLEYKSLSEAVLDLRSIEVQNNWDEKTTDNNSNNHAVPPIANENMLVKQMSWPAHVYYKPEVKAKEEESKTYESASSLSLTTFTSLLIEFVARLQNLVDSFEELGEKANFKDPLEQQDAVASGGFWTKLFNYFKS