AlfalfaGEDB | MS.gene062005

M. sativa cultivar XinJiangDaYe / MS.gene062005

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062005.t1	XP_013453854.1	98.6	74	1	0	1	74	285	358	7.10E-32	146

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062005.t1	D4N502	52.1	71	34	0	1	71	290	360	5.1e-15	81.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062005.t1	A0A072UPY1	98.6	74	1	0	1	74	285	358	5.1e-32	146.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049222	MS.gene062005	-0.803813	2.91E-49	-1.69E-46
MS.gene04932	MS.gene062005	0.813772	2.16E-51	-1.69E-46
MS.gene049549	MS.gene062005	0.829309	5.53E-55	-1.69E-46
MS.gene050170	MS.gene062005	-0.826228	3.04E-54	-1.69E-46
MS.gene050323	MS.gene062005	-0.804662	1.94E-49	-1.69E-46
MS.gene050381	MS.gene062005	0.812172	4.85E-51	-1.69E-46
MS.gene050504	MS.gene062005	-0.807071	6.05E-50	-1.69E-46
MS.gene050647	MS.gene062005	0.842767	2.11E-58	-1.69E-46
MS.gene050868	MS.gene062005	-0.817617	3.01E-52	-1.69E-46
MS.gene050871	MS.gene062005	-0.821614	3.68E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 12 sgRNAs with CRISPR-Local

Find 16 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTACATTGATGACATG+AGG	0.655321	5.1:+37470202	MS.gene062005:CDS
AATGTCGTTGAACACTGCAG+GGG	0.691919	5.1:-37470130	None:intergenic
AGCAACGATTAACTCAGAGA+AGG	0.647001	5.1:+37470026	MS.gene062005:CDS
AGCACTGTGAAATGTGGCAA+TGG	0.625118	5.1:-37470058	None:intergenic
AGTGTGGAAGATTTCTTCAA+AGG	0.508864	5.1:+37470153	MS.gene062005:CDS
AGTGTTCAACGACATTAGTG+TGG	0.716232	5.1:+37470137	MS.gene062005:CDS
CAATCTAGCACTGTGAAATG+TGG	0.587201	5.1:-37470064	None:intergenic
CGATTAACTCAGAGAAGGAG+AGG	0.590103	5.1:+37470031	MS.gene062005:CDS
CTAATGTCGTTGAACACTGC+AGG	0.481272	5.1:-37470132	None:intergenic
GGAGTAATAAGGCTTGGTAC+TGG	0.450966	5.1:-37470102	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGTGGAAGATTTCTTCAA+AGG	+	chr5.1:37470153-37470172	MS.gene062005:CDS	35.0%
AGCAACGATTAACTCAGAGA+AGG	+	chr5.1:37470026-37470045	MS.gene062005:CDS	40.0%
AGTGTTCAACGACATTAGTG+TGG	+	chr5.1:37470137-37470156	MS.gene062005:CDS	40.0%
CAATCTAGCACTGTGAAATG+TGG	-	chr5.1:37470067-37470086	None:intergenic	40.0%
TAATGTCGTTGAACACTGCA+GGG	-	chr5.1:37470134-37470153	None:intergenic	40.0%
AATGTCGTTGAACACTGCAG+GGG	-	chr5.1:37470133-37470152	None:intergenic	45.0%
AGCACTGTGAAATGTGGCAA+TGG	-	chr5.1:37470061-37470080	None:intergenic	45.0%
CGATTAACTCAGAGAAGGAG+AGG	+	chr5.1:37470031-37470050	MS.gene062005:CDS	45.0%
CTAATGTCGTTGAACACTGC+AGG	-	chr5.1:37470135-37470154	None:intergenic	45.0%
TATTTCTCACGCCAGCTTGA+AGG	+	chr5.1:37470177-37470196	MS.gene062005:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	37470014	37470239	37470014	ID=MS.gene062005
chr5.1	mRNA	37470014	37470239	37470014	ID=MS.gene062005.t1;Parent=MS.gene062005
chr5.1	exon	37470014	37470239	37470014	ID=MS.gene062005.t1.exon1;Parent=MS.gene062005.t1
chr5.1	CDS	37470014	37470239	37470014	ID=cds.MS.gene062005.t1;Parent=MS.gene062005.t1

Gene Sequence	>MS.gene062005 TATTGAACATCGAGCAACGATTAACTCAGAGAAGGAGAGGATTTCCATTGCCACATTTCACAGTGCTAGATTGAATGCAATTCTTGCTCCAGTACCAAGCCTTATTACTCCTAAAACCCCTGCAGTGTTCAACGACATTAGTGTGGAAGATTTCTTCAAAGGATATTTCTCACGCCAGCTTGAAGGAAAAATGTACATTGATGACATGAGGATGAAAAATGAGTGA
Protein sequence	>MS.gene062005.t1 YUTSSNDULREGEDFHCHISQCUIECNSCSSTKPYYSUNPCSVQRHUCGRFLQRIFLTPAURKNVHUUHEDEKUV