AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene063579


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063579.t1 MTR_5g076620 99.309 434 3 0 1 434 1 434 0.0 890
MS.gene063579.t1 MTR_5g076620 99.208 379 3 0 1 379 1 379 0.0 778
MS.gene063579.t1 MTR_3g450510 73.950 357 84 2 77 429 37 388 0.0 543
MS.gene063579.t1 MTR_5g090780 73.988 346 81 3 87 429 42 381 0.0 531
MS.gene063579.t1 MTR_3g083630 67.905 296 94 1 138 433 86 380 2.54e-154 442
MS.gene063579.t1 MTR_3g083650 60.563 71 28 0 165 235 1 71 2.25e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene063579.t1 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 594
MS.gene063579.t1 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 594
MS.gene063579.t1 AT5G17230 69.302 430 112 6 2 428 4 416 0.0 594
MS.gene063579.t1 AT5G17230 66.966 445 112 7 2 428 4 431 0.0 585

Find 90 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGGTTTACTCGATTCTTTC+GGG 0.180449 5.2:-65184326 MS.gene063579:CDS
CCTTCTATCATATCTTTAAA+TGG 0.198005 5.2:+65182719 None:intergenic
CCGAAAGGCGAAGAGCTATT+TGG 0.203674 5.2:-65183788 MS.gene063579:CDS
TCATGTCTGTGACATTATTA+AGG 0.208507 5.2:-65184386 MS.gene063579:CDS
TTCCCAGGCAAAACAATTTC+CGG 0.216388 5.2:+65184000 None:intergenic
CAAATAGCTCTTCGCCTTTC+GGG 0.235869 5.2:+65183789 None:intergenic
TCATGAAGAGCCAAATTAAA+AGG 0.246269 5.2:-65182172 MS.gene063579:CDS
GCTATTATATCGACAAATAT+TGG 0.253653 5.2:-65181763 MS.gene063579:CDS
AATGGTTTACTCGATTCTTT+CGG 0.291645 5.2:-65184327 MS.gene063579:CDS
CCAAATAGCTCTTCGCCTTT+CGG 0.300237 5.2:+65183788 None:intergenic
TGCTTCCTCTCCTAGCTTAG+AGG 0.306439 5.2:-65184361 MS.gene063579:CDS
TGGTAAAGAAAGTAACTTCT+TGG 0.327130 5.2:+65181683 None:intergenic
CGAAAGGCGAAGAGCTATTT+GGG 0.344916 5.2:-65183787 MS.gene063579:CDS
GGTTCTAAAGCAGGCGTCTT+TGG 0.359004 5.2:-65184064 MS.gene063579:CDS
CTCTACTGTTACTATGTTGC+TGG 0.359851 5.2:-65182644 MS.gene063579:CDS
CCACTTGTCTGTCACCTTAC+CGG 0.360789 5.2:+65182202 None:intergenic
GCTGTAATATGTGAAGCATT+AGG 0.366470 5.2:+65183240 None:intergenic
CATGTCTGTGACATTATTAA+GGG 0.371237 5.2:-65184385 MS.gene063579:CDS
TCAGATGACGACATATTTGC+CGG 0.386677 5.2:-65182221 MS.gene063579:CDS
ACTTGCATATGCTAGATCTA+TGG 0.394076 5.2:-65181661 MS.gene063579:CDS
CTGTAATATGTGAAGCATTA+GGG 0.396810 5.2:+65183241 None:intergenic
AGAGCTATTTGGGCTATATA+TGG 0.406437 5.2:-65183777 MS.gene063579:intron
TGTTGGTTTAATGAGTGTTC+CGG 0.406495 5.2:-65182618 MS.gene063579:CDS
GTATCTACCACAAGATGAAT+TGG 0.407019 5.2:-65182258 MS.gene063579:CDS
AGCAGGCGTCTTTGGTTAAG+AGG 0.410114 5.2:-65184056 MS.gene063579:CDS
CAGATTTCCTGTTGATATCC+AGG 0.418869 5.2:-65183124 MS.gene063579:intron
ATCAATACCTGGATATCAAC+AGG 0.418894 5.2:+65183117 None:intergenic
CAAGATGAATTGGCTCTGGC+AGG 0.432002 5.2:-65182248 MS.gene063579:CDS
ATCGAGTAAACCATTGGAAC+AGG 0.435907 5.2:+65184335 None:intergenic
ATTACAACAATTTCACTAAG+AGG 0.435955 5.2:-65181722 MS.gene063579:CDS
TTTAATGAGTGTTCCGGTCA+TGG 0.437974 5.2:-65182612 MS.gene063579:CDS
CCATTTAAAGATATGATAGA+AGG 0.449064 5.2:-65182719 MS.gene063579:CDS
CGGTGAACTTGAAGTGAAAC+CGG 0.459098 5.2:-65184019 MS.gene063579:CDS
TACTATGTTGCTGGAACTGT+TGG 0.460078 5.2:-65182635 MS.gene063579:CDS
TACAATGCTGCCTTGGCCTT+AGG 0.462846 5.2:-65182551 MS.gene063579:CDS
TATGATAGAAGGAATGAGAA+TGG 0.470612 5.2:-65182708 MS.gene063579:CDS
GGATAGGTGGGAATCAAGAT+TGG 0.482924 5.2:-65183208 MS.gene063579:CDS
GCAGCATCAAGCATATCAAA+TGG 0.485476 5.2:+65183165 None:intergenic
TATGCATGTGTTGGTCAGCC+TGG 0.487165 5.2:-65184186 MS.gene063579:CDS
TTAGAGGTCTCCTGTTCCAA+TGG 0.489235 5.2:-65184345 MS.gene063579:CDS
TTCAGTGTGGTGTAGGAGGA+CGG 0.496266 5.2:-65183280 MS.gene063579:intron
GGCTGTTTCATCTGAGCAGA+AGG 0.500886 5.2:-65184097 MS.gene063579:CDS
TGCGTTGAAATGCCCATGAC+CGG 0.505460 5.2:+65182599 None:intergenic
TTATGATGTGGTTCTAAAGC+AGG 0.507164 5.2:-65184073 MS.gene063579:CDS
TAGCTGATTTGCAATTCCTA+AGG 0.507538 5.2:+65182535 None:intergenic
TTAATGAGTGTTCCGGTCAT+GGG 0.510615 5.2:-65182611 MS.gene063579:CDS
GCATATCAAATGGACGCCCT+TGG 0.512063 5.2:+65183175 None:intergenic
AGGACGGATGAACTTGTTGA+TGG 0.515418 5.2:-65183264 MS.gene063579:CDS
ACCACAAGATGAATTGGCTC+TGG 0.516944 5.2:-65182252 MS.gene063579:CDS
CATGAAGAGCCAAATTAAAA+GGG 0.517837 5.2:-65182171 MS.gene063579:CDS
CGGTTTCACTTCAAGTTCAC+CGG 0.518111 5.2:+65184020 None:intergenic
TGACGACATATTTGCCGGTA+AGG 0.527146 5.2:-65182216 MS.gene063579:CDS
TTACAACAATTTCACTAAGA+GGG 0.529341 5.2:-65181721 MS.gene063579:CDS
ACCAACATACTCAGAGATGT+TGG 0.536889 5.2:-65182512 MS.gene063579:CDS
CAGCAACTGCAATGGATAGG+TGG 0.537534 5.2:-65183221 MS.gene063579:CDS
GAAAGAATCGAGTAAACCAT+TGG 0.540066 5.2:+65184329 None:intergenic
AAGAGGAAGCTGAACTCTAC+CGG 0.541605 5.2:-65184039 MS.gene063579:CDS
GTGCTCGCGAACCCGACTGC+AGG 0.543450 5.2:-65184126 MS.gene063579:CDS
CAGCCACTTCACCTGCAGTC+GGG 0.545077 5.2:+65184115 None:intergenic
TTGCTAGCACTCTCTAAGCC+AGG 0.549483 5.2:+65184168 None:intergenic
CTCAACAAACTCAAATTCCC+AGG 0.554708 5.2:+65183985 None:intergenic
AGCAACTGCAATGGATAGGT+GGG 0.555214 5.2:-65183220 MS.gene063579:CDS
TAGATACACTCTTCCTCGCC+TGG 0.558995 5.2:+65182274 None:intergenic
CGAGCACATTCGATAACAAA+GGG 0.559386 5.2:+65184142 None:intergenic
ATTTGCAATTCCTAAGGCCA+AGG 0.562166 5.2:+65182541 None:intergenic
GAGTGTGTACAATGCTGCCT+TGG 0.577004 5.2:-65182558 MS.gene063579:CDS
CAATGAACAGAGCAGATGGC+CGG 0.577565 5.2:-65182105 MS.gene063579:intron
GCCAGAGCCAATTCATCTTG+TGG 0.580658 5.2:+65182251 None:intergenic
TCCAACATCTCTGAGTATGT+TGG 0.584691 5.2:+65182511 None:intergenic
AGCTCAATGAACAGAGCAGA+TGG 0.586885 5.2:-65182109 MS.gene063579:CDS
TTACAGCAACTGCAATGGAT+AGG 0.587244 5.2:-65183224 MS.gene063579:CDS
ACATATTACAGCAACTGCAA+TGG 0.587371 5.2:-65183229 MS.gene063579:CDS
AAGATGAATTGGCTCTGGCA+GGG 0.589323 5.2:-65182247 MS.gene063579:CDS
GAACAGGAGACCTCTAAGCT+AGG 0.592655 5.2:+65184351 None:intergenic
TGAGCAGAAGGTTTATGATG+TGG 0.597983 5.2:-65184085 MS.gene063579:CDS
ACAGCCACTTCACCTGCAGT+CGG 0.603936 5.2:+65184114 None:intergenic
GAACCCGACTGCAGGTGAAG+TGG 0.603987 5.2:-65184118 MS.gene063579:CDS
TGGTTTACTCGATTCTTTCG+GGG 0.606852 5.2:-65184325 MS.gene063579:CDS
GATATTAAGTATGCATGTGT+TGG 0.611130 5.2:-65184195 MS.gene063579:CDS
TGAGGCAGAAAAGGGAGTGA+CGG 0.617889 5.2:-65182132 MS.gene063579:CDS
ATTGTACACACTCTCTGTTG+TGG 0.620184 5.2:+65182568 None:intergenic
CCGGTAAGGTGACAGACAAG+TGG 0.621228 5.2:-65182202 MS.gene063579:CDS
GCGAGCACATTCGATAACAA+AGG 0.625781 5.2:+65184141 None:intergenic
CTCTTCTAATGACTCCCGAA+AGG 0.631131 5.2:-65183803 MS.gene063579:CDS
TTTCCTAACAGTGCCAGGCG+AGG 0.637716 5.2:-65182287 MS.gene063579:intron
ATAGATCTAGCATATGCAAG+TGG 0.656749 5.2:+65181663 None:intergenic
GGAGACCTCTAAGCTAGGAG+AGG 0.657505 5.2:+65184356 None:intergenic
CATACTCAGAGATGTTGGAG+AGG 0.697210 5.2:-65182507 MS.gene063579:CDS
GTAAGGTGACAGACAAGTGG+AGG 0.698008 5.2:-65182199 MS.gene063579:CDS
AGTGAAGCATATGACAGATG+TGG 0.707618 5.2:-65183964 MS.gene063579:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATTTGTTAAATTTTCAA+GGG - chr5.2:65182352-65182371 MS.gene063579:intron 10.0%
!! TTTCATGTATATATCTAATT+TGG + chr5.2:65182934-65182953 None:intergenic 15.0%
!!! AAATTGATCTTTATTTATGT+AGG + chr5.2:65182634-65182653 None:intergenic 15.0%
!!! GATTATGATAACAAATATTT+TGG - chr5.2:65182290-65182309 MS.gene063579:intron 15.0%
!!! GTAAATTTGTTAAATTTTCA+AGG - chr5.2:65182351-65182370 MS.gene063579:intron 15.0%
!! AAAATGATAAGAAAAAGACA+CGG - chr5.2:65181774-65181793 MS.gene063579:CDS 20.0%
!! AATAATAGTCAATAGTTATC+TGG + chr5.2:65182319-65182338 None:intergenic 20.0%
!! AATCTGTGTAAAAAAAACTT+AGG + chr5.2:65183617-65183636 None:intergenic 20.0%
!! AATTTAACAAATTTACATGC+AGG + chr5.2:65182347-65182366 None:intergenic 20.0%
!! CAGATTAAGAAATATAATGT+TGG - chr5.2:65183631-65183650 MS.gene063579:intron 20.0%
!! GAGTTGAGTAAATTTATATT+GGG - chr5.2:65182170-65182189 MS.gene063579:CDS 20.0%
!! TTATATCTGAGGAAAAAAAA+TGG - chr5.2:65183138-65183157 MS.gene063579:CDS 20.0%
!! TTCTTATAGACAACAAAAAT+TGG - chr5.2:65182525-65182544 MS.gene063579:CDS 20.0%
!!! ATATGCTAAAACATTTTACT+TGG - chr5.2:65182087-65182106 MS.gene063579:intron 20.0%
!!! ATTTTAGTATGTAACACAAA+AGG - chr5.2:65184195-65184214 MS.gene063579:CDS 20.0%
!!! TATGCTAAAACATTTTACTT+GGG - chr5.2:65182088-65182107 MS.gene063579:intron 20.0%
!!! TGAGTTGAGTAAATTTATAT+TGG - chr5.2:65182169-65182188 MS.gene063579:CDS 20.0%
!!! TTTGAAATAACTTACATACA+TGG - chr5.2:65182457-65182476 MS.gene063579:intron 20.0%
!!! TTTTAGTATGTAACACAAAA+GGG - chr5.2:65184196-65184215 MS.gene063579:CDS 20.0%
! AAAATGAACTTAGTACATGA+CGG + chr5.2:65182591-65182610 None:intergenic 25.0%
! AAATTAACATCCTCACTTTA+AGG + chr5.2:65182133-65182152 None:intergenic 25.0%
! ATCGACAAAAACAAAAGATT+AGG + chr5.2:65183270-65183289 None:intergenic 25.0%
! ATTACAACAATTTCACTAAG+AGG - chr5.2:65184291-65184310 MS.gene063579:CDS 25.0%
! ATTATACAAAACCTTCTTTG+TGG - chr5.2:65183952-65183971 MS.gene063579:CDS 25.0%
! CCATTTAAAGATATGATAGA+AGG - chr5.2:65183294-65183313 MS.gene063579:intron 25.0%
! CCTTCTATCATATCTTTAAA+TGG + chr5.2:65183297-65183316 None:intergenic 25.0%
! GAACAAAATTAATCAATACC+TGG + chr5.2:65182910-65182929 None:intergenic 25.0%
! GCTATTATATCGACAAATAT+TGG - chr5.2:65184250-65184269 MS.gene063579:CDS 25.0%
! GGAAAATTGAGAATATGATA+AGG + chr5.2:65183711-65183730 None:intergenic 25.0%
! GTAGAAAACAACATTAAAGA+TGG + chr5.2:65182958-65182977 None:intergenic 25.0%
! GTATATTTGACATCTGATTA+GGG + chr5.2:65182657-65182676 None:intergenic 25.0%
! TATATGTAAGTGTGTATAGA+TGG - chr5.2:65184000-65184019 MS.gene063579:CDS 25.0%
! TATTATCTTTCCTTAAAGTG+AGG - chr5.2:65182120-65182139 MS.gene063579:CDS 25.0%
! TCCACAAAATCATTATATGT+GGG + chr5.2:65183047-65183066 None:intergenic 25.0%
! TGTATATTTGACATCTGATT+AGG + chr5.2:65182658-65182677 None:intergenic 25.0%
! TTACAACAATTTCACTAAGA+GGG - chr5.2:65184292-65184311 MS.gene063579:CDS 25.0%
! TTCCACAAAATCATTATATG+TGG + chr5.2:65183048-65183067 None:intergenic 25.0%
!! CCTCTAAACTTTAGAAAATA+GGG - chr5.2:65182693-65182712 MS.gene063579:CDS 25.0%
!! TCCTCTAAACTTTAGAAAAT+AGG - chr5.2:65182692-65182711 MS.gene063579:CDS 25.0%
!!! AATGTTGTTTTCTACTTGAA+AGG - chr5.2:65182963-65182982 MS.gene063579:intron 25.0%
!!! ACATGAGATAACTTTTTTGA+TGG + chr5.2:65184383-65184402 None:intergenic 25.0%
!!! AGGTTTTGTATAATGATGTT+TGG + chr5.2:65183946-65183965 None:intergenic 25.0%
!!! AGTGAGGATGTTAATTTTTT+CGG - chr5.2:65182136-65182155 MS.gene063579:CDS 25.0%
!!! AGTTGATTTGAATTTCATTG+AGG - chr5.2:65184140-65184159 MS.gene063579:CDS 25.0%
!!! TGTTAATTTTTTCGGTTTTG+TGG - chr5.2:65182144-65182163 MS.gene063579:CDS 25.0%
AATGGTTTACTCGATTCTTT+CGG - chr5.2:65181686-65181705 MS.gene063579:CDS 30.0%
ACTTAGGACGAAAGTTATTA+TGG + chr5.2:65183601-65183620 None:intergenic 30.0%
CATGAAGAGCCAAATTAAAA+GGG - chr5.2:65183842-65183861 MS.gene063579:intron 30.0%
CCACAAAATCATTATATGTG+GGG + chr5.2:65183046-65183065 None:intergenic 30.0%
GAAATGAAGTGAACAAACAT+CGG + chr5.2:65183548-65183567 None:intergenic 30.0%
GATATTAAGTATGCATGTGT+TGG - chr5.2:65181818-65181837 MS.gene063579:intron 30.0%
TATGATAGAAGGAATGAGAA+TGG - chr5.2:65183305-65183324 MS.gene063579:intron 30.0%
TCAAACTCTTACTATTGAGT+TGG - chr5.2:65184171-65184190 MS.gene063579:CDS 30.0%
TCATGAAGAGCCAAATTAAA+AGG - chr5.2:65183841-65183860 MS.gene063579:intron 30.0%
TGCAAAGAACATTATATCTG+AGG - chr5.2:65183127-65183146 MS.gene063579:CDS 30.0%
TGGTAAAGAAAGTAACTTCT+TGG + chr5.2:65184333-65184352 None:intergenic 30.0%
TGTTTGATAAGTTCATCTAC+TGG - chr5.2:65182381-65182400 MS.gene063579:intron 30.0%
TGTTTGGTTGAATTTCTTAC+CGG + chr5.2:65183930-65183949 None:intergenic 30.0%
! ATTGTTTAGTTTAGCAACAG+AGG + chr5.2:65183662-65183681 None:intergenic 30.0%
! CTGTAATATGTGAAGCATTA+GGG + chr5.2:65182775-65182794 None:intergenic 30.0%
!!! CCCTATTTTCTAAAGTTTAG+AGG + chr5.2:65182696-65182715 None:intergenic 30.0%
!!! TGAGATAACTTTTTTGATGG+AGG + chr5.2:65184380-65184399 None:intergenic 30.0%
!!! TTTTTTGATGAGGCAGAAAA+GGG - chr5.2:65183873-65183892 MS.gene063579:intron 30.0%
AACTTGTAGCCAATTCCATT+TGG - chr5.2:65182553-65182572 MS.gene063579:CDS 35.0%
ACATATTACAGCAACTGCAA+TGG - chr5.2:65182784-65182803 MS.gene063579:intron 35.0%
ACTTGCATATGCTAGATCTA+TGG - chr5.2:65184352-65184371 MS.gene063579:CDS 35.0%
AGAGCTATTTGGGCTATATA+TGG - chr5.2:65182236-65182255 MS.gene063579:CDS 35.0%
ATAGATCTAGCATATGCAAG+TGG + chr5.2:65184353-65184372 None:intergenic 35.0%
ATCAATACCTGGATATCAAC+AGG + chr5.2:65182899-65182918 None:intergenic 35.0%
ATCTGAGGAAAAAAAATGGC+AGG - chr5.2:65183142-65183161 MS.gene063579:CDS 35.0%
ATGGTTTACTCGATTCTTTC+GGG - chr5.2:65181687-65181706 MS.gene063579:CDS 35.0%
GAAAGAATCGAGTAAACCAT+TGG + chr5.2:65181687-65181706 None:intergenic 35.0%
GATAAATCCTCTAACACTGA+AGG + chr5.2:65183248-65183267 None:intergenic 35.0%
GTATCTACCACAAGATGAAT+TGG - chr5.2:65183755-65183774 MS.gene063579:intron 35.0%
TCATTATATGTGGGGACAAA+AGG + chr5.2:65183038-65183057 None:intergenic 35.0%
! AATGACCCTGCATTTGATTT+CGG - chr5.2:65183679-65183698 MS.gene063579:intron 35.0%
! ATATTGGGTTCTTTTCTCTC+AGG - chr5.2:65182185-65182204 MS.gene063579:CDS 35.0%
! CCCCACATATAATGATTTTG+TGG - chr5.2:65183043-65183062 MS.gene063579:intron 35.0%
! GCTGTAATATGTGAAGCATT+AGG + chr5.2:65182776-65182795 None:intergenic 35.0%
!! TAGCTGATTTGCAATTCCTA+AGG + chr5.2:65183481-65183500 None:intergenic 35.0%
!! TGTTGGTTTAATGAGTGTTC+CGG - chr5.2:65183395-65183414 MS.gene063579:intron 35.0%
!! TTATGATGTGGTTCTAAAGC+AGG - chr5.2:65181940-65181959 MS.gene063579:intron 35.0%
!!! ATACTACTGCTTTTTCAGTG+TGG - chr5.2:65182720-65182739 MS.gene063579:CDS 35.0%
!!! GTTTTTTGATGAGGCAGAAA+AGG - chr5.2:65183872-65183891 MS.gene063579:intron 35.0%
!!! TGTAACACAAAAGGGTGTTT+TGG - chr5.2:65184204-65184223 MS.gene063579:CDS 35.0%
ACCAACATACTCAGAGATGT+TGG - chr5.2:65183501-65183520 MS.gene063579:intron 40.0%
AGTGAAGCATATGACAGATG+TGG - chr5.2:65182049-65182068 MS.gene063579:intron 40.0%
ATCGAGTAAACCATTGGAAC+AGG + chr5.2:65181681-65181700 None:intergenic 40.0%
ATGAAGCCGAAATCAAATGC+AGG + chr5.2:65183688-65183707 None:intergenic 40.0%
ATTGTACACACTCTCTGTTG+TGG + chr5.2:65183448-65183467 None:intergenic 40.0%
ATTTGCAATTCCTAAGGCCA+AGG + chr5.2:65183475-65183494 None:intergenic 40.0%
CAGATTTCCTGTTGATATCC+AGG - chr5.2:65182889-65182908 MS.gene063579:intron 40.0%
CGAGCACATTCGATAACAAA+GGG + chr5.2:65181874-65181893 None:intergenic 40.0%
CTCAACAAACTCAAATTCCC+AGG + chr5.2:65182031-65182050 None:intergenic 40.0%
CTCTACTGTTACTATGTTGC+TGG - chr5.2:65183369-65183388 MS.gene063579:intron 40.0%
GAAAACTACAGCCACAAAGA+AGG + chr5.2:65183966-65183985 None:intergenic 40.0%
GAACTTAGTACATGACGGTA+TGG + chr5.2:65182586-65182605 None:intergenic 40.0%
GCAGCATCAAGCATATCAAA+TGG + chr5.2:65182851-65182870 None:intergenic 40.0%
GGTGAGTGATCATGCTTATA+TGG - chr5.2:65182257-65182276 MS.gene063579:CDS 40.0%
TACTATGTTGCTGGAACTGT+TGG - chr5.2:65183378-65183397 MS.gene063579:intron 40.0%
TCAGATGACGACATATTTGC+CGG - chr5.2:65183792-65183811 MS.gene063579:CDS 40.0%
TCCAACATCTCTGAGTATGT+TGG + chr5.2:65183505-65183524 None:intergenic 40.0%
TGAAGCCGAAATCAAATGCA+GGG + chr5.2:65183687-65183706 None:intergenic 40.0%
TGAGCAGAAGGTTTATGATG+TGG - chr5.2:65181928-65181947 MS.gene063579:intron 40.0%
TGGTTTACTCGATTCTTTCG+GGG - chr5.2:65181688-65181707 MS.gene063579:CDS 40.0%
TTAATGAGTGTTCCGGTCAT+GGG - chr5.2:65183402-65183421 MS.gene063579:intron 40.0%
TTACAGCAACTGCAATGGAT+AGG - chr5.2:65182789-65182808 MS.gene063579:intron 40.0%
TTCCCAGGCAAAACAATTTC+CGG + chr5.2:65182016-65182035 None:intergenic 40.0%
TTTAATGAGTGTTCCGGTCA+TGG - chr5.2:65183401-65183420 MS.gene063579:intron 40.0%
! AGATTGGACGAACTTTTCCA+AGG - chr5.2:65182821-65182840 MS.gene063579:intron 40.0%
! GATTGGACGAACTTTTCCAA+GGG - chr5.2:65182822-65182841 MS.gene063579:intron 40.0%
! TCAATTTTCCTAACAGTGCC+AGG - chr5.2:65183721-65183740 MS.gene063579:intron 40.0%
!! AAACCGGAAATTGTTTTGCC+TGG - chr5.2:65182010-65182029 MS.gene063579:intron 40.0%
!! AACCGGAAATTGTTTTGCCT+GGG - chr5.2:65182011-65182030 MS.gene063579:intron 40.0%
!! ACGTTCTCGCCCTTTTAATT+TGG + chr5.2:65183854-65183873 None:intergenic 40.0%
AAGAGGAAGCTGAACTCTAC+CGG - chr5.2:65181974-65181993 MS.gene063579:intron 45.0%
AGCAACTGCAATGGATAGGT+GGG - chr5.2:65182793-65182812 MS.gene063579:intron 45.0%
AGCTCAATGAACAGAGCAGA+TGG - chr5.2:65183904-65183923 MS.gene063579:intron 45.0%
ATGTTCGCCTTCAGTGTTAG+AGG - chr5.2:65183238-65183257 MS.gene063579:CDS 45.0%
CAAATAGCTCTTCGCCTTTC+GGG + chr5.2:65182227-65182246 None:intergenic 45.0%
CATACTCAGAGATGTTGGAG+AGG - chr5.2:65183506-65183525 MS.gene063579:intron 45.0%
CCAAATAGCTCTTCGCCTTT+CGG + chr5.2:65182228-65182247 None:intergenic 45.0%
CGAAAGGCGAAGAGCTATTT+GGG - chr5.2:65182226-65182245 MS.gene063579:CDS 45.0%
CGGTGAACTTGAAGTGAAAC+CGG - chr5.2:65181994-65182013 MS.gene063579:intron 45.0%
CTCTTCTAATGACTCCCGAA+AGG - chr5.2:65182210-65182229 MS.gene063579:CDS 45.0%
GCGAGCACATTCGATAACAA+AGG + chr5.2:65181875-65181894 None:intergenic 45.0%
GGATAGGTGGGAATCAAGAT+TGG - chr5.2:65182805-65182824 MS.gene063579:intron 45.0%
GGCGCATAACCAAATGGAAT+TGG + chr5.2:65182565-65182584 None:intergenic 45.0%
TCTACTTGAAAGGCAACGAG+TGG - chr5.2:65182973-65182992 MS.gene063579:intron 45.0%
TGACGACATATTTGCCGGTA+AGG - chr5.2:65183797-65183816 MS.gene063579:CDS 45.0%
TTAGAGGTCTCCTGTTCCAA+TGG - chr5.2:65181668-65181687 MS.gene063579:CDS 45.0%
! ACCACAAGATGAATTGGCTC+TGG - chr5.2:65183761-65183780 MS.gene063579:intron 45.0%
! CGGTTTCACTTCAAGTTCAC+CGG + chr5.2:65181996-65182015 None:intergenic 45.0%
!! AAGATGAATTGGCTCTGGCA+GGG - chr5.2:65183766-65183785 MS.gene063579:intron 45.0%
!! AGGACGGATGAACTTGTTGA+TGG - chr5.2:65182749-65182768 MS.gene063579:intron 45.0%
!! GTTTTGGATGTTGCAGGTGT+GGG - chr5.2:65184220-65184239 MS.gene063579:CDS 45.0%
!! TGTTTTGGATGTTGCAGGTG+TGG - chr5.2:65184219-65184238 MS.gene063579:CDS 45.0%
!!! AAGGGTGTTTTGGATGTTGC+AGG - chr5.2:65184214-65184233 MS.gene063579:CDS 45.0%
!!! CTGCTTTTTCAGTGTGGTGT+AGG - chr5.2:65182726-65182745 MS.gene063579:intron 45.0%
!!! CTTTTTCAGTGTGGTGTAGG+AGG - chr5.2:65182729-65182748 MS.gene063579:intron 45.0%
!!! GGCGAGAACGTTTTTTGATG+AGG - chr5.2:65183863-65183882 MS.gene063579:intron 45.0%
AACTTTCCTGCAACCAGCCT+AGG - chr5.2:65183010-65183029 MS.gene063579:intron 50.0%
AGCAGGCGTCTTTGGTTAAG+AGG - chr5.2:65181957-65181976 MS.gene063579:intron 50.0%
CAATGAACAGAGCAGATGGC+CGG - chr5.2:65183908-65183927 MS.gene063579:intron 50.0%
CAGCAACTGCAATGGATAGG+TGG - chr5.2:65182792-65182811 MS.gene063579:intron 50.0%
CCACTTGTCTGTCACCTTAC+CGG + chr5.2:65183814-65183833 None:intergenic 50.0%
CCGAAAGGCGAAGAGCTATT+TGG - chr5.2:65182225-65182244 MS.gene063579:CDS 50.0%
CGGTATGGCGCATAACCAAA+TGG + chr5.2:65182571-65182590 None:intergenic 50.0%
GAACAGGAGACCTCTAAGCT+AGG + chr5.2:65181665-65181684 None:intergenic 50.0%
GAGTGTGTACAATGCTGCCT+TGG - chr5.2:65183455-65183474 MS.gene063579:intron 50.0%
GCATATCAAATGGACGCCCT+TGG + chr5.2:65182841-65182860 None:intergenic 50.0%
GCCAGAGCCAATTCATCTTG+TGG + chr5.2:65183765-65183784 None:intergenic 50.0%
GTAAGGTGACAGACAAGTGG+AGG - chr5.2:65183814-65183833 MS.gene063579:intron 50.0%
TAGATACACTCTTCCTCGCC+TGG + chr5.2:65183742-65183761 None:intergenic 50.0%
TGAGGCAGAAAAGGGAGTGA+CGG - chr5.2:65183881-65183900 MS.gene063579:intron 50.0%
TGCGTTGAAATGCCCATGAC+CGG + chr5.2:65183417-65183436 None:intergenic 50.0%
TGCTTCCTCTCCTAGCTTAG+AGG - chr5.2:65181652-65181671 MS.gene063579:CDS 50.0%
TGTGGGGACAAAAGGAACCT+AGG + chr5.2:65183030-65183049 None:intergenic 50.0%
TTCAGTGTGGTGTAGGAGGA+CGG - chr5.2:65182733-65182752 MS.gene063579:intron 50.0%
TTGCTAGCACTCTCTAAGCC+AGG + chr5.2:65181848-65181867 None:intergenic 50.0%
! GGCTGTTTCATCTGAGCAGA+AGG - chr5.2:65181916-65181935 MS.gene063579:intron 50.0%
! TACAATGCTGCCTTGGCCTT+AGG - chr5.2:65183462-65183481 MS.gene063579:intron 50.0%
! TATGCATGTGTTGGTCAGCC+TGG - chr5.2:65181827-65181846 MS.gene063579:intron 50.0%
!! CAAGATGAATTGGCTCTGGC+AGG - chr5.2:65183765-65183784 MS.gene063579:intron 50.0%
!! GGTTCTAAAGCAGGCGTCTT+TGG - chr5.2:65181949-65181968 MS.gene063579:intron 50.0%
ACAGCCACTTCACCTGCAGT+CGG + chr5.2:65181902-65181921 None:intergenic 55.0%
CCGGTAAGGTGACAGACAAG+TGG - chr5.2:65183811-65183830 MS.gene063579:intron 55.0%
GGAGACCTCTAAGCTAGGAG+AGG + chr5.2:65181660-65181679 None:intergenic 55.0%
GGGACAAAAGGAACCTAGGC+TGG + chr5.2:65183026-65183045 None:intergenic 55.0%
TTTCCTAACAGTGCCAGGCG+AGG - chr5.2:65183726-65183745 MS.gene063579:intron 55.0%
! AAGGAACCTAGGCTGGTTGC+AGG + chr5.2:65183019-65183038 None:intergenic 55.0%
CAGCCACTTCACCTGCAGTC+GGG + chr5.2:65181901-65181920 None:intergenic 60.0%
CTTCCTCGCCTGGCACTGTT+AGG + chr5.2:65183732-65183751 None:intergenic 60.0%
GAACCCGACTGCAGGTGAAG+TGG - chr5.2:65181895-65181914 MS.gene063579:intron 60.0%
GTGCTCGCGAACCCGACTGC+AGG - chr5.2:65181887-65181906 MS.gene063579:intron 70.0%


Chromosome Type Strat End Strand Name
chr5.2 gene 65181629 65184406 65181629 ID=MS.gene063579
chr5.2 mRNA 65181629 65184406 65181629 ID=MS.gene063579.t1;Parent=MS.gene063579
chr5.2 exon 65183926 65184406 65183926 ID=MS.gene063579.t1.exon1;Parent=MS.gene063579.t1
chr5.2 CDS 65183926 65184406 65183926 ID=cds.MS.gene063579.t1;Parent=MS.gene063579.t1
chr5.2 exon 65183778 65183828 65183778 ID=MS.gene063579.t1.exon2;Parent=MS.gene063579.t1
chr5.2 CDS 65183778 65183828 65183778 ID=cds.MS.gene063579.t1;Parent=MS.gene063579.t1
chr5.2 exon 65183125 65183297 65183125 ID=MS.gene063579.t1.exon3;Parent=MS.gene063579.t1
chr5.2 CDS 65183125 65183297 65183125 ID=cds.MS.gene063579.t1;Parent=MS.gene063579.t1
chr5.2 exon 65182506 65182741 65182506 ID=MS.gene063579.t1.exon4;Parent=MS.gene063579.t1
chr5.2 CDS 65182506 65182741 65182506 ID=cds.MS.gene063579.t1;Parent=MS.gene063579.t1
chr5.2 exon 65182106 65182298 65182106 ID=MS.gene063579.t1.exon5;Parent=MS.gene063579.t1
chr5.2 CDS 65182106 65182298 65182106 ID=cds.MS.gene063579.t1;Parent=MS.gene063579.t1
chr5.2 exon 65181629 65181799 65181629 ID=MS.gene063579.t1.exon6;Parent=MS.gene063579.t1
chr5.2 CDS 65181629 65181799 65181629 ID=cds.MS.gene063579.t1;Parent=MS.gene063579.t1
Gene Sequence

>MS.gene063579

ATGTCTGTGACATTATTAAGGGTTGCTTCCTCTCCTAGCTTAGAGGTCTCCTGTTCCAATGGTTTACTCGATTCTTTCGGGGTTGTGAAGCTCGTAGATTCTTCGAAGTTCTTGTCTAGAGACTTTGTGTCGATTAGAGCTAAAAAAAATGATAAGAAAAAGACACGGAGATTTTGCTCATTGAGTACTGATATTAAGTATGCATGTGTTGGTCAGCCTGGCTTAGAGAGTGCTAGCAACTTCCCTTTGTTATCGAATGTGCTCGCGAACCCGACTGCAGGTGAAGTGGCTGTTTCATCTGAGCAGAAGGTTTATGATGTGGTTCTAAAGCAGGCGTCTTTGGTTAAGAGGAAGCTGAACTCTACCGGTGAACTTGAAGTGAAACCGGAAATTGTTTTGCCTGGGAATTTGAGTTTGTTGAGTGAAGCATATGACAGATGTGGAGAAATTTGTGCAGAATATGCTAAAACATTTTACTTGGGTTAGCTTTCTATTATCTTTCCTTAAAGTGAGGATGTTAATTTTTTCGGTTTTGTGGTGTGAGTTGAGTAAATTTATATTGGGTTCTTTTCTCTCAGGAACTCTTCTAATGACTCCCGAAAGGCGAAGAGCTATTTGGGCTATATATGGTGAGTGATCATGCTTATATGGTTTTCATTATGATTATGATAACAAATATTTTGGTTTCCAGATAACTATTGACTATTATTATAAACCTGCATGTAAATTTGTTAAATTTTCAAGGGAGTTTATGTTTGATAAGTTCATCTACTGGACAGTTTTTGCTATAGAATCTGCAAGCTTGAAAATATTTCTTTTTAATTGATGTTTGAAATAACTTACATACATGGAAGTTTTGAACGAGTCTTCTAAAATTCAGAAATTAGTGTCTATGTTTCTTATAGACAACAAAAATTGGAATGTAACTTGTAGCCAATTCCATTTGGTTATGCGCCATACCGTCATGTACTAAGTTCATTTTGTAAGCTGATTATGACTGCTCCTACATAAATAAAGATCAATTTCCCTAATCAGATGTCAAATATACAAAGTTTTGAACGAGTCCTCTAAACTTTAGAAAATAGGGTCTAATACTACTGCTTTTTCAGTGTGGTGTAGGAGGACGGATGAACTTGTTGATGGCCCTAATGCTTCACATATTACAGCAACTGCAATGGATAGGTGGGAATCAAGATTGGACGAACTTTTCCAAGGGCGTCCATTTGATATGCTTGATGCTGCTTTATCAGATACTGTCAACAGATTTCCTGTTGATATCCAGGTATTGATTAATTTTGTTCACCAAATTAGATATATACATGAAAACCATCTTTAATGTTGTTTTCTACTTGAAAGGCAACGAGTGGTGAATGATTTTATGAACTTTCCTGCAACCAGCCTAGGTTCCTTTTGTCCCCACATATAATGATTTTGTGGAACACGCAAATATGTTTTGTTACTTATAATAAGCTTGCAAGTTTAATCAGTAAAGTTATCATGCAAAGAACATTATATCTGAGGAAAAAAAATGGCAGGTAAAAAATGTTGAAATTCTGAACATGTGTCATTAGAAAAAAACTTTTCTTTGAATAGATAGACAGAGATAAATATGTTCGCCTTCAGTGTTAGAGGATTTATCCTAATCTTTTGTTTTTGTCGATGCAGCCATTTAAAGATATGATAGAAGGAATGAGAATGGATCTTAAGAAGTCGAGATACAAAAGCTTTGATGAACTATATCTCTACTGTTACTATGTTGCTGGAACTGTTGGTTTAATGAGTGTTCCGGTCATGGGCATTTCAACGCATTCGCAAGCCACAACAGAGAGTGTGTACAATGCTGCCTTGGCCTTAGGAATTGCAAATCAGCTAACCAACATACTCAGAGATGTTGGAGAGGAGTAAGTTCAGAACTACCGATGTTTGTTCACTTCATTTCATAAATTTTATGAAAAAATATATTCTCATTCCATAATAACTTTCGTCCTAAGTTTTTTTTACACAGATTAAGAAATATAATGTTGGTTTTTCCTCTGTTGCTAAACTAAACAATGACCCTGCATTTGATTTCGGCTTCATCCTTATCATATTCTCAATTTTCCTAACAGTGCCAGGCGAGGAAGAGTGTATCTACCACAAGATGAATTGGCTCTGGCAGGGCTTTCAGATGACGACATATTTGCCGGTAAGGTGACAGACAAGTGGAGGAACTTCATGAAGAGCCAAATTAAAAGGGCGAGAACGTTTTTTGATGAGGCAGAAAAGGGAGTGACGGAGCTCAATGAACAGAGCAGATGGCCGGTAAGAAATTCAACCAAACATCATTATACAAAACCTTCTTTGTGGCTGTAGTTTTCATTGTTTCGCAGTATATATGTAAGTGTGTATAGATGGAATGTCTTTGCATGATAACGAGAGAAGTTAATTCTCATTGTTGAATCTAATCATAATGATTAAAACAGATTGTCATATATGTTTTTCAATATGCAATGTGACTTCTTATAGTTTTCGAGTTGATTTGAATTTCATTGAGGTTACAAGTTCAAACTCTTACTATTGAGTTGGCATTTTAGTATGTAACACAAAAGGGTGTTTTGGATGTTGCAGGTGTGGGCATCTTTGCTATTATATCGACAAATATTGGACGAAATAGAAGCTAATGATTACAACAATTTCACTAAGAGGGCTTATGTGAGCAAAACCAAGAAGTTACTTTCTTTACCACTTGCATATGCTAGATCTATGGTTCCTCCATCAAAAAAGTTATCTCATGTATGA

Protein sequence

>MS.gene063579.t1

MSVTLLRVASSPSLEVSCSNGLLDSFGVVKLVDSSKFLSRDFVSIRAKKNDKKKTRRFCSLSTDIKYACVGQPGLESASNFPLLSNVLANPTAGEVAVSSEQKVYDVVLKQASLVKRKLNSTGELEVKPEIVLPGNLSLLSEAYDRCGEICAEYAKTFYLGTLLMTPERRRAIWAIYVWCRRTDELVDGPNASHITATAMDRWESRLDELFQGRPFDMLDAALSDTVNRFPVDIQPFKDMIEGMRMDLKKSRYKSFDELYLYCYYVAGTVGLMSVPVMGISTHSQATTESVYNAALALGIANQLTNILRDVGEDARRGRVYLPQDELALAGLSDDDIFAGKVTDKWRNFMKSQIKRARTFFDEAEKGVTELNEQSRWPVWASLLLYRQILDEIEANDYNNFTKRAYVSKTKKLLSLPLAYARSMVPPSKKLSHV