Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068514.t1 | XP_024634871.1 | 100 | 342 | 0 | 0 | 1 | 342 | 519 | 860 | 1.50E-201 | 711.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068514.t1 | F4IXE7 | 30.2 | 338 | 188 | 9 | 2 | 336 | 729 | 1021 | 4.2e-35 | 150.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068514.t1 | G7ZZK5 | 100.0 | 342 | 0 | 0 | 1 | 342 | 556 | 897 | 1.1e-201 | 711.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene068514.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene068514 | 0.834318 | 3.21E-56 | -1.69E-46 |
| MS.gene049343 | MS.gene068514 | 0.800768 | 1.23E-48 | -1.69E-46 |
| MS.gene049435 | MS.gene068514 | 0.807117 | 5.91E-50 | -1.69E-46 |
| MS.gene049452 | MS.gene068514 | 0.827962 | 1.17E-54 | -1.69E-46 |
| MS.gene050026 | MS.gene068514 | 0.819866 | 9.27E-53 | -1.69E-46 |
| MS.gene050105 | MS.gene068514 | 0.807013 | 6.22E-50 | -1.69E-46 |
| MS.gene050442 | MS.gene068514 | 0.81375 | 2.19E-51 | -1.69E-46 |
| MS.gene050605 | MS.gene068514 | 0.800265 | 1.56E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene068514 | 0.843229 | 1.59E-58 | -1.69E-46 |
| MS.gene050750 | MS.gene068514 | 0.841705 | 4.04E-58 | -1.69E-46 |
| MS.gene050905 | MS.gene068514 | -0.815788 | 7.73E-52 | -1.69E-46 |
| MS.gene050953 | MS.gene068514 | 0.840748 | 7.21E-58 | -1.69E-46 |
| MS.gene051198 | MS.gene068514 | 0.834656 | 2.64E-56 | -1.69E-46 |
| MS.gene051368 | MS.gene068514 | 0.807141 | 5.84E-50 | -1.69E-46 |
| MS.gene051924 | MS.gene068514 | -0.837824 | 4.14E-57 | -1.69E-46 |
| MS.gene051926 | MS.gene068514 | -0.832967 | 6.99E-56 | -1.69E-46 |
| MS.gene052190 | MS.gene068514 | 0.813617 | 2.34E-51 | -1.69E-46 |
| MS.gene052333 | MS.gene068514 | 0.819232 | 1.29E-52 | -1.69E-46 |
| MS.gene052426 | MS.gene068514 | 0.817105 | 3.92E-52 | -1.69E-46 |
| MS.gene052519 | MS.gene068514 | 0.845985 | 2.89E-59 | -1.69E-46 |
| MS.gene052586 | MS.gene068514 | 0.801941 | 7.10E-49 | -1.69E-46 |
| MS.gene052674 | MS.gene068514 | 0.802149 | 6.43E-49 | -1.69E-46 |
| MS.gene052675 | MS.gene068514 | 0.804226 | 2.39E-49 | -1.69E-46 |
| MS.gene052677 | MS.gene068514 | 0.806238 | 9.07E-50 | -1.69E-46 |
| MS.gene052863 | MS.gene068514 | 0.82318 | 1.59E-53 | -1.69E-46 |
| MS.gene053008 | MS.gene068514 | 0.829185 | 5.93E-55 | -1.69E-46 |
| MS.gene053166 | MS.gene068514 | 0.848997 | 4.29E-60 | -1.69E-46 |
| MS.gene05414 | MS.gene068514 | 0.801743 | 7.80E-49 | -1.69E-46 |
| MS.gene05415 | MS.gene068514 | 0.843298 | 1.53E-58 | -1.69E-46 |
| MS.gene054236 | MS.gene068514 | 0.806426 | 8.27E-50 | -1.69E-46 |
| MS.gene054291 | MS.gene068514 | -0.806508 | 7.95E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene068514 | 0.836169 | 1.10E-56 | -1.69E-46 |
| MS.gene054559 | MS.gene068514 | 0.855387 | 6.53E-62 | -1.69E-46 |
| MS.gene054651 | MS.gene068514 | 0.823157 | 1.61E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene068514 | 0.815786 | 7.73E-52 | -1.69E-46 |
| MS.gene05510 | MS.gene068514 | 0.850246 | 1.92E-60 | -1.69E-46 |
| MS.gene055701 | MS.gene068514 | 0.857564 | 1.50E-62 | -1.69E-46 |
| MS.gene055818 | MS.gene068514 | 0.83185 | 1.32E-55 | -1.69E-46 |
| MS.gene055926 | MS.gene068514 | 0.821938 | 3.09E-53 | -1.69E-46 |
| MS.gene056506 | MS.gene068514 | 0.840662 | 7.60E-58 | -1.69E-46 |
| MS.gene057026 | MS.gene068514 | 0.811811 | 5.81E-51 | -1.69E-46 |
| MS.gene057060 | MS.gene068514 | 0.813179 | 2.92E-51 | -1.69E-46 |
| MS.gene057208 | MS.gene068514 | 0.828232 | 1.01E-54 | -1.69E-46 |
| MS.gene057444 | MS.gene068514 | 0.811434 | 7.01E-51 | -1.69E-46 |
| MS.gene05761 | MS.gene068514 | 0.802086 | 6.63E-49 | -1.69E-46 |
| MS.gene058009 | MS.gene068514 | 0.823105 | 1.66E-53 | -1.69E-46 |
| MS.gene058223 | MS.gene068514 | -0.801741 | 7.80E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene068514 | 0.821113 | 4.80E-53 | -1.69E-46 |
| MS.gene058783 | MS.gene068514 | 0.802571 | 5.27E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene068514 | 0.850914 | 1.25E-60 | -1.69E-46 |
| MS.gene059128 | MS.gene068514 | 0.802496 | 5.46E-49 | -1.69E-46 |
| MS.gene059161 | MS.gene068514 | 0.840615 | 7.82E-58 | -1.69E-46 |
| MS.gene05979 | MS.gene068514 | 0.822502 | 2.29E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene068514 | 0.825775 | 3.90E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene068514 | 0.831681 | 1.45E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene068514 | 0.845842 | 3.15E-59 | -1.69E-46 |
| MS.gene06052 | MS.gene068514 | 0.809729 | 1.64E-50 | -1.69E-46 |
| MS.gene060572 | MS.gene068514 | 0.811603 | 6.45E-51 | -1.69E-46 |
| MS.gene060634 | MS.gene068514 | -0.815369 | 9.58E-52 | -1.69E-46 |
| MS.gene060683 | MS.gene068514 | 0.815036 | 1.14E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene068514 | 0.812231 | 4.70E-51 | -1.69E-46 |
| MS.gene060802 | MS.gene068514 | 0.806255 | 8.99E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene068514 | 0.816129 | 6.48E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene068514 | 0.802319 | 5.93E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068514.t1 | MTR_1g068930 | 100.000 | 342 | 0 | 0 | 1 | 342 | 556 | 897 | 0.0 | 719 |
| MS.gene068514.t1 | MTR_1g068930 | 100.000 | 342 | 0 | 0 | 1 | 342 | 519 | 860 | 0.0 | 717 |
| MS.gene068514.t1 | MTR_7g102610 | 52.514 | 358 | 149 | 5 | 1 | 338 | 591 | 947 | 3.48e-122 | 374 |
| MS.gene068514.t1 | MTR_1g062330 | 51.541 | 357 | 152 | 5 | 2 | 338 | 447 | 802 | 3.46e-114 | 350 |
| MS.gene068514.t1 | MTR_4g057290 | 41.337 | 329 | 170 | 5 | 2 | 308 | 183 | 510 | 3.00e-76 | 245 |
| MS.gene068514.t1 | MTR_4g050090 | 38.781 | 361 | 197 | 8 | 2 | 339 | 283 | 642 | 2.18e-73 | 242 |
| MS.gene068514.t1 | MTR_4g056990 | 37.500 | 360 | 175 | 7 | 2 | 336 | 283 | 617 | 3.44e-71 | 233 |
| MS.gene068514.t1 | MTR_1g062330 | 47.843 | 255 | 113 | 4 | 2 | 237 | 447 | 700 | 8.32e-71 | 233 |
| MS.gene068514.t1 | MTR_2g084425 | 54.211 | 190 | 77 | 4 | 158 | 338 | 830 | 1018 | 3.90e-58 | 202 |
| MS.gene068514.t1 | MTR_2g084425 | 41.477 | 176 | 84 | 2 | 1 | 158 | 555 | 729 | 1.14e-37 | 143 |
| MS.gene068514.t1 | MTR_5g071340 | 29.969 | 327 | 176 | 8 | 1 | 320 | 787 | 1067 | 5.61e-41 | 153 |
| MS.gene068514.t1 | MTR_1g103830 | 30.636 | 346 | 186 | 8 | 2 | 338 | 712 | 1012 | 1.64e-40 | 152 |
| MS.gene068514.t1 | MTR_2g078040 | 30.029 | 343 | 184 | 12 | 2 | 336 | 870 | 1164 | 8.26e-39 | 147 |
| MS.gene068514.t1 | MTR_7g109640 | 29.191 | 346 | 194 | 11 | 1 | 337 | 484 | 787 | 1.82e-38 | 145 |
| MS.gene068514.t1 | MTR_5g024500 | 27.941 | 340 | 194 | 10 | 1 | 337 | 128 | 419 | 2.97e-38 | 141 |
| MS.gene068514.t1 | MTR_2g084425 | 41.477 | 176 | 84 | 2 | 1 | 158 | 555 | 729 | 1.57e-37 | 143 |
| MS.gene068514.t1 | MTR_2g084425 | 52.500 | 120 | 47 | 4 | 158 | 268 | 830 | 948 | 3.07e-30 | 122 |
| MS.gene068514.t1 | MTR_3g464550 | 29.358 | 327 | 179 | 8 | 1 | 320 | 710 | 991 | 2.72e-37 | 142 |
| MS.gene068514.t1 | MTR_5g024390 | 27.353 | 340 | 196 | 10 | 1 | 337 | 128 | 419 | 2.94e-37 | 139 |
| MS.gene068514.t1 | MTR_3g103110 | 27.059 | 340 | 187 | 10 | 1 | 328 | 496 | 786 | 1.94e-33 | 131 |
| MS.gene068514.t1 | MTR_3g103120 | 28.302 | 318 | 183 | 9 | 1 | 312 | 529 | 807 | 2.90e-32 | 127 |
| MS.gene068514.t1 | MTR_1g072130 | 27.536 | 345 | 200 | 11 | 1 | 338 | 919 | 1220 | 7.55e-31 | 124 |
| MS.gene068514.t1 | MTR_7g095140 | 26.074 | 349 | 190 | 12 | 2 | 342 | 17 | 305 | 1.15e-27 | 111 |
| MS.gene068514.t1 | MTR_4g099530 | 21.264 | 348 | 183 | 11 | 1 | 328 | 212 | 488 | 1.98e-16 | 80.5 |
| MS.gene068514.t1 | MTR_3g103160 | 29.747 | 158 | 99 | 4 | 189 | 334 | 285 | 442 | 7.26e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068514.t1 | AT2G37520 | 67.816 | 348 | 100 | 4 | 1 | 338 | 470 | 815 | 7.35e-173 | 501 |
| MS.gene068514.t1 | AT3G53680 | 65.130 | 347 | 113 | 2 | 1 | 340 | 488 | 833 | 3.50e-166 | 484 |
| MS.gene068514.t1 | AT3G53680 | 65.130 | 347 | 113 | 2 | 1 | 340 | 490 | 835 | 4.04e-166 | 484 |
| MS.gene068514.t1 | AT2G36720 | 48.066 | 362 | 167 | 5 | 1 | 342 | 617 | 977 | 4.12e-108 | 338 |
| MS.gene068514.t1 | AT2G36720 | 48.066 | 362 | 167 | 5 | 1 | 342 | 617 | 977 | 4.12e-108 | 338 |
| MS.gene068514.t1 | AT2G27980 | 41.322 | 363 | 190 | 5 | 1 | 340 | 697 | 1059 | 8.88e-90 | 290 |
| MS.gene068514.t1 | AT5G58610 | 31.579 | 342 | 192 | 8 | 1 | 338 | 474 | 777 | 7.07e-43 | 158 |
| MS.gene068514.t1 | AT5G58610 | 31.579 | 342 | 192 | 8 | 1 | 338 | 696 | 999 | 7.80e-43 | 159 |
| MS.gene068514.t1 | AT5G58610 | 31.579 | 342 | 192 | 8 | 1 | 338 | 705 | 1008 | 7.89e-43 | 159 |
| MS.gene068514.t1 | AT5G58610 | 31.579 | 342 | 192 | 8 | 1 | 338 | 705 | 1008 | 7.89e-43 | 159 |
| MS.gene068514.t1 | AT5G58610 | 31.579 | 342 | 192 | 8 | 1 | 338 | 696 | 999 | 8.68e-43 | 158 |
| MS.gene068514.t1 | AT5G58610 | 31.579 | 342 | 192 | 8 | 1 | 338 | 705 | 1008 | 9.37e-43 | 158 |
| MS.gene068514.t1 | AT3G14980 | 30.321 | 343 | 185 | 10 | 2 | 338 | 684 | 978 | 1.70e-38 | 146 |
| MS.gene068514.t1 | AT3G14980 | 30.321 | 343 | 185 | 10 | 2 | 338 | 729 | 1023 | 1.93e-38 | 145 |
| MS.gene068514.t1 | AT3G14980 | 30.321 | 343 | 185 | 10 | 2 | 338 | 729 | 1023 | 2.34e-38 | 145 |
| MS.gene068514.t1 | AT3G14980 | 30.321 | 343 | 185 | 10 | 2 | 338 | 729 | 1023 | 2.34e-38 | 145 |
| MS.gene068514.t1 | AT3G14980 | 30.321 | 343 | 185 | 10 | 2 | 338 | 729 | 1023 | 2.34e-38 | 145 |
| MS.gene068514.t1 | AT4G14920 | 28.125 | 352 | 186 | 10 | 2 | 340 | 688 | 985 | 2.95e-38 | 145 |
| MS.gene068514.t1 | AT4G14920 | 28.125 | 352 | 186 | 10 | 2 | 340 | 688 | 985 | 2.95e-38 | 145 |
| MS.gene068514.t1 | AT4G14920 | 28.125 | 352 | 186 | 10 | 2 | 340 | 688 | 985 | 3.04e-38 | 145 |
| MS.gene068514.t1 | AT5G58610 | 30.409 | 342 | 170 | 9 | 1 | 338 | 696 | 973 | 2.87e-37 | 142 |
| MS.gene068514.t1 | AT5G58610 | 30.409 | 342 | 170 | 9 | 1 | 338 | 696 | 973 | 3.38e-37 | 142 |
| MS.gene068514.t1 | AT1G05380 | 29.794 | 339 | 191 | 8 | 2 | 336 | 628 | 923 | 1.81e-35 | 137 |
| MS.gene068514.t1 | AT1G05380 | 29.794 | 339 | 191 | 8 | 2 | 336 | 628 | 923 | 1.81e-35 | 137 |
| MS.gene068514.t1 | AT1G05380 | 29.794 | 339 | 191 | 8 | 2 | 336 | 628 | 923 | 1.81e-35 | 137 |
| MS.gene068514.t1 | AT5G58610 | 30.796 | 289 | 159 | 7 | 1 | 285 | 705 | 956 | 5.95e-34 | 132 |
| MS.gene068514.t1 | AT5G58610 | 30.796 | 289 | 159 | 7 | 1 | 285 | 696 | 947 | 6.39e-34 | 132 |
| MS.gene068514.t1 | AT5G63900 | 26.748 | 329 | 170 | 11 | 1 | 319 | 258 | 525 | 4.59e-31 | 123 |
| MS.gene068514.t1 | AT5G36740 | 27.273 | 341 | 200 | 10 | 2 | 338 | 653 | 949 | 7.66e-30 | 120 |
| MS.gene068514.t1 | AT5G36740 | 27.273 | 341 | 200 | 10 | 2 | 338 | 653 | 949 | 7.66e-30 | 120 |
| MS.gene068514.t1 | AT5G36740 | 26.420 | 352 | 199 | 11 | 2 | 338 | 500 | 806 | 2.86e-27 | 113 |
| MS.gene068514.t1 | AT5G58610 | 30.677 | 251 | 133 | 7 | 1 | 247 | 696 | 909 | 1.23e-24 | 105 |
| MS.gene068514.t1 | AT5G36670 | 24.930 | 357 | 202 | 13 | 2 | 338 | 653 | 963 | 9.06e-21 | 94.0 |
| MS.gene068514.t1 | AT5G36670 | 24.930 | 357 | 202 | 13 | 2 | 338 | 653 | 963 | 9.06e-21 | 94.0 |
| MS.gene068514.t1 | AT5G36740 | 25.532 | 282 | 163 | 8 | 2 | 279 | 653 | 891 | 1.99e-20 | 93.2 |
| MS.gene068514.t1 | AT5G36740 | 25.532 | 282 | 163 | 8 | 2 | 279 | 653 | 891 | 1.99e-20 | 93.2 |
| MS.gene068514.t1 | AT5G36670 | 25.532 | 282 | 163 | 8 | 2 | 279 | 653 | 891 | 1.99e-20 | 93.2 |
| MS.gene068514.t1 | AT3G14980 | 27.273 | 253 | 131 | 9 | 2 | 248 | 729 | 934 | 4.00e-19 | 89.0 |
| MS.gene068514.t1 | AT5G36670 | 24.457 | 368 | 200 | 15 | 2 | 338 | 500 | 820 | 1.64e-18 | 87.4 |
| MS.gene068514.t1 | AT5G36670 | 24.457 | 368 | 200 | 15 | 2 | 338 | 653 | 973 | 3.33e-18 | 86.3 |
Find 91 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGCAGGCGAAATATTTC+TGG | 0.184888 | 1.3:+48047677 | MS.gene068514:intron |
| CTGATTCCTGTTATGGTATA+TGG | 0.204303 | 1.3:+48047020 | MS.gene068514:CDS |
| TAGTATCTGCCGGGCTTCTT+AGG | 0.257711 | 1.3:+48047833 | MS.gene068514:CDS |
| TCCATTTGGACTAAGAAATT+AGG | 0.275286 | 1.3:+48048157 | MS.gene068514:CDS |
| AATATTTCTGGCCAAGAATT+CGG | 0.299340 | 1.3:+48047689 | MS.gene068514:CDS |
| CTGCACCTCTTTAAGATGTT+TGG | 0.299842 | 1.3:-48048397 | None:intergenic |
| CATCCACCCACTTCATATTC+TGG | 0.300717 | 1.3:-48045229 | None:intergenic |
| ATATTTCTGGCCAAGAATTC+GGG | 0.311304 | 1.3:+48047690 | MS.gene068514:CDS |
| ATTTCAATTGCAGCCTGCTT+GGG | 0.355527 | 1.3:+48045094 | MS.gene068514:intron |
| TATTTCAATTGCAGCCTGCT+TGG | 0.361264 | 1.3:+48045093 | MS.gene068514:intron |
| GCCTAATTTCTTAGTCCAAA+TGG | 0.376041 | 1.3:-48048158 | None:intergenic |
| CAGGGGATGCAGAGTCCATT+TGG | 0.382960 | 1.3:+48048143 | MS.gene068514:CDS |
| TGGGTGGATGCGTTGTTTGC+AGG | 0.387332 | 1.3:+48045242 | MS.gene068514:CDS |
| GATCCCATCGTTGCAATATC+TGG | 0.389667 | 1.3:+48046990 | MS.gene068514:CDS |
| GCTTACCCATATACCATAAC+AGG | 0.391501 | 1.3:-48047026 | None:intergenic |
| GTATCATGTTGGTTGCTTGC+GGG | 0.403484 | 1.3:+48045816 | MS.gene068514:CDS |
| GACTCTGCATCCCCTGCAGC+AGG | 0.410293 | 1.3:-48048136 | None:intergenic |
| AAGCTGGTGCTCCCTGCTGC+AGG | 0.415428 | 1.3:+48048124 | MS.gene068514:CDS |
| TCGTGACCTGATTCCTGTTA+TGG | 0.418037 | 1.3:+48047013 | MS.gene068514:CDS |
| CCTTGTCGGAACTAATAATC+AGG | 0.420091 | 1.3:+48046050 | MS.gene068514:CDS |
| CTGCAGAACTCAGTTTCTGC+TGG | 0.425684 | 1.3:+48046007 | MS.gene068514:CDS |
| GTTGGTTGCTTGCGGGACAT+TGG | 0.430834 | 1.3:+48045823 | MS.gene068514:CDS |
| AGTTCTATTGTAGTATCTGC+CGG | 0.436363 | 1.3:+48047823 | MS.gene068514:intron |
| AACAGTAATAATTTGTGATC+AGG | 0.437855 | 1.3:+48045699 | MS.gene068514:CDS |
| CGTGTCAACCGTATCATGAT+TGG | 0.445167 | 1.3:-48045193 | None:intergenic |
| TTCTTTGCAATGGATGTCCT+AGG | 0.446094 | 1.3:+48044738 | MS.gene068514:CDS |
| TACCATACCATCTTCCTTGT+CGG | 0.451679 | 1.3:+48046036 | MS.gene068514:CDS |
| TTGGTTGCTTGCGGGACATT+GGG | 0.451865 | 1.3:+48045824 | MS.gene068514:CDS |
| TTCTCTAAATGTAGAAAAGC+TGG | 0.453959 | 1.3:+48048108 | MS.gene068514:CDS |
| CATATACCATAACAGGAATC+AGG | 0.457604 | 1.3:-48047019 | None:intergenic |
| TCACAAGATGAGTGAAGATC+AGG | 0.472645 | 1.3:+48048183 | MS.gene068514:CDS |
| ACAACAAAACCACTTATCCT+TGG | 0.476811 | 1.3:-48045957 | None:intergenic |
| TGATTCCTGTTATGGTATAT+GGG | 0.477661 | 1.3:+48047021 | MS.gene068514:CDS |
| GCTCTCTACTTGTAGCTACC+AGG | 0.479856 | 1.3:-48047885 | None:intergenic |
| CAACAAAACCACTTATCCTT+GGG | 0.483162 | 1.3:-48045956 | None:intergenic |
| AACATCAGTGCTGGAAAAGA+TGG | 0.491255 | 1.3:+48048437 | MS.gene068514:CDS |
| CTTCAACAAAACATCAGTGC+TGG | 0.496640 | 1.3:+48048428 | MS.gene068514:CDS |
| GATCACAAATTATTACTGTT+CGG | 0.496937 | 1.3:-48045696 | None:intergenic |
| ATTAGTTCCGACAAGGAAGA+TGG | 0.499097 | 1.3:-48046043 | None:intergenic |
| TGCCACTTAAAATTCTCCAT+TGG | 0.501723 | 1.3:-48046120 | None:intergenic |
| AGACAATGCCAACCACTCTC+TGG | 0.504882 | 1.3:-48045130 | None:intergenic |
| TCTTTGCAATGGATGTCCTA+GGG | 0.507931 | 1.3:+48044739 | MS.gene068514:CDS |
| AGGAGCTTCCCAAGGATAAG+TGG | 0.511538 | 1.3:+48045948 | MS.gene068514:intron |
| AGTATCATGTTGGTTGCTTG+CGG | 0.523548 | 1.3:+48045815 | MS.gene068514:CDS |
| GGAGATTTGATTCTTTGCAA+TGG | 0.524987 | 1.3:+48044728 | MS.gene068514:CDS |
| CAATATTGCTGAGCTTCCCC+TGG | 0.530864 | 1.3:+48047867 | MS.gene068514:CDS |
| TAATCAGGAAGCATGAGGAC+AGG | 0.533029 | 1.3:+48046065 | MS.gene068514:CDS |
| CGCTGTTCTCTTGCATAGAG+AGG | 0.535338 | 1.3:+48048077 | MS.gene068514:CDS |
| AATCAGGAAGCATGAGGACA+GGG | 0.536694 | 1.3:+48046066 | MS.gene068514:CDS |
| TTCCGACAAGGAAGATGGTA+TGG | 0.538378 | 1.3:-48046038 | None:intergenic |
| AGCTGGTGCTCCCTGCTGCA+GGG | 0.540416 | 1.3:+48048125 | MS.gene068514:CDS |
| GACAGGGGATTATGTACGTA+TGG | 0.542273 | 1.3:+48046082 | MS.gene068514:CDS |
| GTTAACCAAACATCTTAAAG+AGG | 0.550069 | 1.3:+48048392 | MS.gene068514:intron |
| CCTAGCACCTCTTTCATCAC+CGG | 0.553179 | 1.3:-48045170 | None:intergenic |
| GTTCTATTGTAGTATCTGCC+GGG | 0.553325 | 1.3:+48047824 | MS.gene068514:intron |
| GCTGGTGCTCCCTGCTGCAG+GGG | 0.553471 | 1.3:+48048126 | MS.gene068514:CDS |
| GACGATATGTGTGCAGTATG+TGG | 0.562409 | 1.3:+48044698 | None:intergenic |
| GGACATTGGGCTATGTGAGT+TGG | 0.565407 | 1.3:+48045837 | MS.gene068514:CDS |
| TACACTGTGTAAACCCAAGC+AGG | 0.566345 | 1.3:-48045107 | None:intergenic |
| CTAAATTGTGAAGATAATAC+CGG | 0.566713 | 1.3:+48045151 | MS.gene068514:CDS |
| CAATCATGATACGGTTGACA+CGG | 0.569872 | 1.3:+48045194 | MS.gene068514:CDS |
| GAGACATGAATGATATCCAA+TGG | 0.570210 | 1.3:+48046104 | MS.gene068514:CDS |
| AGTGCTGGAAAAGATGGTGC+AGG | 0.576023 | 1.3:+48048443 | MS.gene068514:CDS |
| CTCTCTACTTGTAGCTACCA+GGG | 0.577610 | 1.3:-48047884 | None:intergenic |
| CCTGATTATTAGTTCCGACA+AGG | 0.584730 | 1.3:-48046050 | None:intergenic |
| GATAATACCGGTGATGAAAG+AGG | 0.586090 | 1.3:+48045163 | MS.gene068514:CDS |
| ACAGTGTACCAGAGAGTGGT+TGG | 0.587119 | 1.3:+48045122 | MS.gene068514:CDS |
| CGACCAGATATTGCAACGAT+GGG | 0.591304 | 1.3:-48046993 | None:intergenic |
| GTGCTAGGCCAATCATGATA+CGG | 0.593336 | 1.3:+48045185 | MS.gene068514:CDS |
| CGACTGCAATCGAATATATG+TGG | 0.593667 | 1.3:+48045982 | MS.gene068514:CDS |
| ATGTGTGCAGTATGTGGAGA+TGG | 0.595554 | 1.3:+48044704 | MS.gene068514:CDS |
| TTTACTACAGGAGCTTCCCA+AGG | 0.613778 | 1.3:+48045940 | MS.gene068514:intron |
| GAACCAGAATATGAAGTGGG+TGG | 0.615638 | 1.3:+48045226 | MS.gene068514:CDS |
| ACGACCAGATATTGCAACGA+TGG | 0.617395 | 1.3:-48046994 | None:intergenic |
| TAAAGAACCAGAATATGAAG+TGG | 0.620957 | 1.3:+48045222 | MS.gene068514:CDS |
| TATTTCTGGCCAAGAATTCG+GGG | 0.624320 | 1.3:+48047691 | MS.gene068514:CDS |
| AATCATGATACGGTTGACAC+GGG | 0.627097 | 1.3:+48045195 | MS.gene068514:CDS |
| TCACCTGCATGAAAAGCCCT+AGG | 0.627515 | 1.3:-48044755 | None:intergenic |
| ACTCTGCATCCCCTGCAGCA+GGG | 0.632470 | 1.3:-48048135 | None:intergenic |
| GCAGCAGCTCGTGAAAGTAA+CGG | 0.635905 | 1.3:-48046166 | None:intergenic |
| ACTAATAATCAGGAAGCATG+AGG | 0.636804 | 1.3:+48046060 | MS.gene068514:CDS |
| AAAGAACCAGAATATGAAGT+GGG | 0.639564 | 1.3:+48045223 | MS.gene068514:CDS |
| TGTGCAGTATGTGGAGATGG+AGG | 0.641733 | 1.3:+48044707 | MS.gene068514:CDS |
| GCTACAAGTAGAGAGCATCA+AGG | 0.644661 | 1.3:+48047892 | MS.gene068514:CDS |
| GGGGAAGCTCAGCAATATTG+CGG | 0.647399 | 1.3:-48047864 | None:intergenic |
| TTACACAGTGTACCAGAGAG+TGG | 0.659593 | 1.3:+48045118 | MS.gene068514:CDS |
| CCGGTGATGAAAGAGGTGCT+AGG | 0.664182 | 1.3:+48045170 | MS.gene068514:CDS |
| ATTTCTGGCCAAGAATTCGG+GGG | 0.674461 | 1.3:+48047692 | MS.gene068514:CDS |
| ATCAGGAAGCATGAGGACAG+GGG | 0.674473 | 1.3:+48046067 | MS.gene068514:CDS |
| TCTCTACTTGTAGCTACCAG+GGG | 0.693635 | 1.3:-48047883 | None:intergenic |
| TGTGAGAAGGAGTATCATGT+TGG | 0.706727 | 1.3:+48045805 | MS.gene068514:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATAACAATAATATATAA+AGG | - | chr1.3:48048250-48048269 | None:intergenic | 10.0% |
| !! | GATATCATATTATAATATTA+TGG | + | chr1.3:48045063-48045082 | MS.gene068514:intron | 10.0% |
| !!! | TATTGAATTGTTAATTTTTT+TGG | + | chr1.3:48045628-48045647 | MS.gene068514:intron | 10.0% |
| !!! | TTATACCAATATATTTTTTT+GGG | + | chr1.3:48045534-48045553 | MS.gene068514:intron | 10.0% |
| !!! | AAAGTCACTTTATATTAAAT+AGG | - | chr1.3:48046423-48046442 | None:intergenic | 15.0% |
| !!! | AAGTCACTTTATATTAAATA+GGG | - | chr1.3:48046422-48046441 | None:intergenic | 15.0% |
| !!! | ACAATTTTTGTTTTTTGTTT+TGG | + | chr1.3:48048366-48048385 | MS.gene068514:intron | 15.0% |
| !!! | ACTACAATTTATTTTAATGT+TGG | + | chr1.3:48047050-48047069 | MS.gene068514:intron | 15.0% |
| !!! | CAATTTTTAAAAAACATAGA+AGG | - | chr1.3:48044789-48044808 | None:intergenic | 15.0% |
| !!! | CTTATACCAATATATTTTTT+TGG | + | chr1.3:48045533-48045552 | MS.gene068514:intron | 15.0% |
| !!! | TTTACTTTCATTTAAGATTA+TGG | + | chr1.3:48045345-48045364 | MS.gene068514:intron | 15.0% |
| !! | AATTACTCATATTGAAAAAG+TGG | + | chr1.3:48047942-48047961 | MS.gene068514:intron | 20.0% |
| !! | ATCACAAGATTAAATGTTTA+AGG | + | chr1.3:48047578-48047597 | MS.gene068514:intron | 20.0% |
| !! | GAAAAATAAATCTCAAAAGT+GGG | - | chr1.3:48046339-48046358 | None:intergenic | 20.0% |
| !! | TAATATTTGTGTCAAAAATC+TGG | + | chr1.3:48046264-48046283 | MS.gene068514:intron | 20.0% |
| !! | TGTAAAGAATCTTATATCAA+GGG | - | chr1.3:48046361-48046380 | None:intergenic | 20.0% |
| !! | TTGGTAAAATATATCATCTT+TGG | - | chr1.3:48048008-48048027 | None:intergenic | 20.0% |
| !! | TTGTAAAGAATCTTATATCA+AGG | - | chr1.3:48046362-48046381 | None:intergenic | 20.0% |
| !!! | AGTCACTTTATATTAAATAG+GGG | - | chr1.3:48046421-48046440 | None:intergenic | 20.0% |
| !!! | AGTTAAGTACAATTTTCATA+GGG | - | chr1.3:48045736-48045755 | None:intergenic | 20.0% |
| !!! | ATATTTTTTATTACGAGTCT+TGG | + | chr1.3:48047405-48047424 | MS.gene068514:intron | 20.0% |
| !!! | GATATCATTTTGAAATTCAA+CGG | - | chr1.3:48045443-48045462 | None:intergenic | 20.0% |
| !!! | TAGTTAAGTACAATTTTCAT+AGG | - | chr1.3:48045737-48045756 | None:intergenic | 20.0% |
| !!! | TTCATTTAAGATTATGGTAA+TGG | + | chr1.3:48045351-48045370 | MS.gene068514:intron | 20.0% |
| ! | AAATAAAGATAGAATGCTAG+AGG | - | chr1.3:48046919-48046938 | None:intergenic | 25.0% |
| ! | ACCATCTTATAATTGAACTT+GGG | + | chr1.3:48046528-48046547 | MS.gene068514:intron | 25.0% |
| ! | ACTACTTAAGCTATATTTCT+AGG | + | chr1.3:48046610-48046629 | MS.gene068514:intron | 25.0% |
| ! | AGTTCATCTTCTAAATTTAC+TGG | + | chr1.3:48048209-48048228 | MS.gene068514:intron | 25.0% |
| ! | ATAATATGATATCTTGTTGC+CGG | - | chr1.3:48045056-48045075 | None:intergenic | 25.0% |
| ! | ATGCATATTTATCACAATTC+AGG | - | chr1.3:48047220-48047239 | None:intergenic | 25.0% |
| ! | ATTATGTATCATGAGATCAA+GGG | + | chr1.3:48045377-48045396 | MS.gene068514:intron | 25.0% |
| ! | CACTATATTATCAGAAAACA+TGG | - | chr1.3:48047646-48047665 | None:intergenic | 25.0% |
| ! | CAGTTCCCAAAAAAATATAT+TGG | - | chr1.3:48045542-48045561 | None:intergenic | 25.0% |
| ! | CTAAATTGTGAAGATAATAC+CGG | + | chr1.3:48045151-48045170 | MS.gene068514:CDS | 25.0% |
| ! | GATCACAAATTATTACTGTT+CGG | - | chr1.3:48045699-48045718 | None:intergenic | 25.0% |
| ! | GGAAAAATAAATCTCAAAAG+TGG | - | chr1.3:48046340-48046359 | None:intergenic | 25.0% |
| ! | TACCATCTTATAATTGAACT+TGG | + | chr1.3:48046527-48046546 | MS.gene068514:intron | 25.0% |
| ! | TAGAGTTTATTAGGTTTGAA+CGG | - | chr1.3:48046675-48046694 | None:intergenic | 25.0% |
| ! | TAGCTTAAGTAGAGTTTATT+AGG | - | chr1.3:48046684-48046703 | None:intergenic | 25.0% |
| ! | TATTATGTATCATGAGATCA+AGG | + | chr1.3:48045376-48045395 | MS.gene068514:intron | 25.0% |
| ! | TCTACTTAAGCTATATTTCT+AGG | + | chr1.3:48046691-48046710 | MS.gene068514:intron | 25.0% |
| ! | TTATTGTTATCTTACTGACA+TGG | + | chr1.3:48048257-48048276 | MS.gene068514:intron | 25.0% |
| !! | AACAGTAATAATTTGTGATC+AGG | + | chr1.3:48045699-48045718 | MS.gene068514:CDS | 25.0% |
| !! | GCTCAATTAAATGTATTTTG+TGG | + | chr1.3:48047610-48047629 | MS.gene068514:intron | 25.0% |
| !! | TTCCTGATAGTTCTTAATTT+TGG | + | chr1.3:48047769-48047788 | MS.gene068514:intron | 25.0% |
| !!! | AAAAGTGGGTTTTTATAGTA+AGG | - | chr1.3:48046325-48046344 | None:intergenic | 25.0% |
| !!! | ATTTTAATGTTGGTTGATAG+TGG | + | chr1.3:48047060-48047079 | MS.gene068514:intron | 25.0% |
| !!! | CTACCTTATTTTGTTAATAC+CGG | + | chr1.3:48045034-48045053 | MS.gene068514:intron | 25.0% |
| !!! | TACTGACTTTTCCTTTAATT+GGG | + | chr1.3:48046797-48046816 | MS.gene068514:intron | 25.0% |
| !!! | TTAGGTTGTAGAATAGTTTT+TGG | + | chr1.3:48046850-48046869 | MS.gene068514:intron | 25.0% |
| AAAGAACCAGAATATGAAGT+GGG | + | chr1.3:48045223-48045242 | MS.gene068514:CDS | 30.0% | |
| AAATAAAGCTTAATGCTGAC+TGG | - | chr1.3:48045601-48045620 | None:intergenic | 30.0% | |
| AAATAAGGTAGAAAGAAACC+AGG | - | chr1.3:48045025-48045044 | None:intergenic | 30.0% | |
| AAGAAAACACAAGTATCACA+TGG | - | chr1.3:48045892-48045911 | None:intergenic | 30.0% | |
| ACTTGAGAAACTGATATTGT+TGG | - | chr1.3:48044922-48044941 | None:intergenic | 30.0% | |
| ATATCAAAGCAATCACATTC+TGG | + | chr1.3:48045297-48045316 | MS.gene068514:intron | 30.0% | |
| ATCTCAGTAAACCCAATTAA+AGG | - | chr1.3:48046811-48046830 | None:intergenic | 30.0% | |
| ATGATGCATTTGTCAACAAT+GGG | + | chr1.3:48047457-48047476 | MS.gene068514:intron | 30.0% | |
| ATGTTAATAGAGCTTATCGT+TGG | - | chr1.3:48048027-48048046 | None:intergenic | 30.0% | |
| CCATATACAGCAAAAATTCA+AGG | - | chr1.3:48046234-48046253 | None:intergenic | 30.0% | |
| GACCAAAATTAAGAACTATC+AGG | - | chr1.3:48047774-48047793 | None:intergenic | 30.0% | |
| GTTAACCAAACATCTTAAAG+AGG | + | chr1.3:48048392-48048411 | MS.gene068514:intron | 30.0% | |
| TAAAGAACCAGAATATGAAG+TGG | + | chr1.3:48045222-48045241 | MS.gene068514:CDS | 30.0% | |
| TCCATTTGGACTAAGAAATT+AGG | + | chr1.3:48048157-48048176 | MS.gene068514:CDS | 30.0% | |
| TCCCAAGTTCAATTATAAGA+TGG | - | chr1.3:48046532-48046551 | None:intergenic | 30.0% | |
| TGATTCCTGTTATGGTATAT+GGG | + | chr1.3:48047021-48047040 | MS.gene068514:CDS | 30.0% | |
| TTAATTGGGTTTACTGAGAT+GGG | + | chr1.3:48046811-48046830 | MS.gene068514:intron | 30.0% | |
| TTCTCTAAATGTAGAAAAGC+TGG | + | chr1.3:48048108-48048127 | MS.gene068514:CDS | 30.0% | |
| TTCTTAACTAGTGTCCTTAT+GGG | - | chr1.3:48047531-48047550 | None:intergenic | 30.0% | |
| TTGCCGGTATTAACAAAATA+AGG | - | chr1.3:48045040-48045059 | None:intergenic | 30.0% | |
| TTTAATTGGGTTTACTGAGA+TGG | + | chr1.3:48046810-48046829 | MS.gene068514:intron | 30.0% | |
| TTTCTTAACTAGTGTCCTTA+TGG | - | chr1.3:48047532-48047551 | None:intergenic | 30.0% | |
| ! | ATCCAATGGAGAATTTTAAG+TGG | + | chr1.3:48046118-48046137 | MS.gene068514:CDS | 30.0% |
| ! | TCACATGGATATTTTCTACA+AGG | - | chr1.3:48045877-48045896 | None:intergenic | 30.0% |
| !! | AATATTTCTGGCCAAGAATT+CGG | + | chr1.3:48047689-48047708 | MS.gene068514:CDS | 30.0% |
| !! | CCTTGAATTTTTGCTGTATA+TGG | + | chr1.3:48046231-48046250 | MS.gene068514:intron | 30.0% |
| !! | CTTTAAGATGTTTGGTTAAC+TGG | - | chr1.3:48048392-48048411 | None:intergenic | 30.0% |
| !! | GTGTATTTTGAATTTTGTGC+AGG | + | chr1.3:48047663-48047682 | MS.gene068514:intron | 30.0% |
| !!! | ATATTTTTTTGGGAACTGTG+AGG | + | chr1.3:48045544-48045563 | MS.gene068514:intron | 30.0% |
| !!! | ATTTTTCGAGTGAGTGTTTA+TGG | + | chr1.3:48046190-48046209 | MS.gene068514:intron | 30.0% |
| !!! | ATTTTTTTGGATTGATCGAC+AGG | + | chr1.3:48045641-48045660 | MS.gene068514:intron | 30.0% |
| !!! | CGTTTTAATTGTGAAGTATG+TGG | + | chr1.3:48047727-48047746 | MS.gene068514:intron | 30.0% |
| !!! | CTACTGACTTTTCCTTTAAT+TGG | + | chr1.3:48046796-48046815 | MS.gene068514:intron | 30.0% |
| !!! | TATTTTTTTGGGAACTGTGA+GGG | + | chr1.3:48045545-48045564 | MS.gene068514:intron | 30.0% |
| !!! | TCACATGCTATTTTTACTAC+AGG | + | chr1.3:48045928-48045947 | MS.gene068514:intron | 30.0% |
| !!! | TGTCAAAAATCTGGTTTTCA+TGG | + | chr1.3:48046273-48046292 | MS.gene068514:intron | 30.0% |
| !!! | TTTTTTTGGATTGATCGACA+GGG | + | chr1.3:48045642-48045661 | MS.gene068514:intron | 30.0% |
| ACAACAAAACCACTTATCCT+TGG | - | chr1.3:48045960-48045979 | None:intergenic | 35.0% | |
| AGTTCTATTGTAGTATCTGC+CGG | + | chr1.3:48047823-48047842 | MS.gene068514:intron | 35.0% | |
| ATCACATTCTGGCAACTTTA+TGG | + | chr1.3:48045308-48045327 | MS.gene068514:intron | 35.0% | |
| ATTCTGGCAACTTTATGGAA+AGG | + | chr1.3:48045313-48045332 | MS.gene068514:intron | 35.0% | |
| ATTGATTATGTAGAGGAGAG+GGG | - | chr1.3:48047265-48047284 | None:intergenic | 35.0% | |
| CAACAAAACCACTTATCCTT+GGG | - | chr1.3:48045959-48045978 | None:intergenic | 35.0% | |
| CATATACCATAACAGGAATC+AGG | - | chr1.3:48047022-48047041 | None:intergenic | 35.0% | |
| CTGATTCCTGTTATGGTATA+TGG | + | chr1.3:48047020-48047039 | MS.gene068514:CDS | 35.0% | |
| CTGCTAAAGATAGTTCAGTT+TGG | + | chr1.3:48045481-48045500 | MS.gene068514:intron | 35.0% | |
| GAAAAAATTCCTGTGAACGA+TGG | - | chr1.3:48047368-48047387 | None:intergenic | 35.0% | |
| GAGACATGAATGATATCCAA+TGG | + | chr1.3:48046104-48046123 | MS.gene068514:CDS | 35.0% | |
| GATGATGCATTTGTCAACAA+TGG | + | chr1.3:48047456-48047475 | MS.gene068514:intron | 35.0% | |
| GCCTAATTTCTTAGTCCAAA+TGG | - | chr1.3:48048161-48048180 | None:intergenic | 35.0% | |
| GCTTGAAAATAACCCTGAAA+GGG | - | chr1.3:48048058-48048077 | None:intergenic | 35.0% | |
| GGAGATTTGATTCTTTGCAA+TGG | + | chr1.3:48044728-48044747 | MS.gene068514:CDS | 35.0% | |
| GTGTACAATAACTAACCACT+GGG | - | chr1.3:48047127-48047146 | None:intergenic | 35.0% | |
| TAATTGGGTTTACTGAGATG+GGG | + | chr1.3:48046812-48046831 | MS.gene068514:intron | 35.0% | |
| TCTACATAATCAATGGTCGA+TGG | + | chr1.3:48047271-48047290 | MS.gene068514:intron | 35.0% | |
| TGTCTTCTAAATCCATCGTT+GGG | - | chr1.3:48046501-48046520 | None:intergenic | 35.0% | |
| TGTGTACAATAACTAACCAC+TGG | - | chr1.3:48047128-48047147 | None:intergenic | 35.0% | |
| TTAGCTTCAACATATGGCAT+TGG | - | chr1.3:48047196-48047215 | None:intergenic | 35.0% | |
| TTTCTTCCAATTCTGAACTC+AGG | - | chr1.3:48048308-48048327 | None:intergenic | 35.0% | |
| ! | ACTAATAATCAGGAAGCATG+AGG | + | chr1.3:48046060-48046079 | MS.gene068514:CDS | 35.0% |
| ! | ATCGACCATTGATTATGTAG+AGG | - | chr1.3:48047272-48047291 | None:intergenic | 35.0% |
| ! | CAAGATCATTTTGCAAAACG+AGG | + | chr1.3:48046567-48046586 | MS.gene068514:intron | 35.0% |
| ! | CATTGATTATGTAGAGGAGA+GGG | - | chr1.3:48047266-48047285 | None:intergenic | 35.0% |
| ! | TCAGGTTTAGCTTCAACATA+TGG | - | chr1.3:48047202-48047221 | None:intergenic | 35.0% |
| ! | TGCCACTTAAAATTCTCCAT+TGG | - | chr1.3:48046123-48046142 | None:intergenic | 35.0% |
| ! | TGGATATTTTCTACAAGGCT+TGG | - | chr1.3:48045872-48045891 | None:intergenic | 35.0% |
| !! | ATATTTCTGGCCAAGAATTC+GGG | + | chr1.3:48047690-48047709 | MS.gene068514:CDS | 35.0% |
| !! | ATTGCGTAAGAGCATGTTTT+AGG | + | chr1.3:48047320-48047339 | MS.gene068514:intron | 35.0% |
| !! | CACTGATGTTTTGTTGAAGA+GGG | - | chr1.3:48048427-48048446 | None:intergenic | 35.0% |
| !! | TTGCGTAAGAGCATGTTTTA+GGG | + | chr1.3:48047321-48047340 | MS.gene068514:intron | 35.0% |
| !!! | TGTTATTTTCCAGTGTGAGA+AGG | + | chr1.3:48045792-48045811 | MS.gene068514:intron | 35.0% |
| AATACATTCCCCCGAATTCT+TGG | - | chr1.3:48047703-48047722 | None:intergenic | 40.0% | |
| AATACTGCACTGGATAACAG+AGG | - | chr1.3:48044973-48044992 | None:intergenic | 40.0% | |
| AATCATGATACGGTTGACAC+GGG | + | chr1.3:48045195-48045214 | MS.gene068514:CDS | 40.0% | |
| AATTGGGTTTACTGAGATGG+GGG | + | chr1.3:48046813-48046832 | MS.gene068514:intron | 40.0% | |
| AGTGTTAACTGTGGAGTCTT+TGG | - | chr1.3:48046761-48046780 | None:intergenic | 40.0% | |
| ATTAGTTCCGACAAGGAAGA+TGG | - | chr1.3:48046046-48046065 | None:intergenic | 40.0% | |
| ATTTCAATTGCAGCCTGCTT+GGG | + | chr1.3:48045094-48045113 | MS.gene068514:intron | 40.0% | |
| CAATCATGATACGGTTGACA+CGG | + | chr1.3:48045194-48045213 | MS.gene068514:CDS | 40.0% | |
| CCTCTCCTCTACATAATCAA+TGG | + | chr1.3:48047264-48047283 | MS.gene068514:intron | 40.0% | |
| CCTGATTATTAGTTCCGACA+AGG | - | chr1.3:48046053-48046072 | None:intergenic | 40.0% | |
| CCTTGTCGGAACTAATAATC+AGG | + | chr1.3:48046050-48046069 | MS.gene068514:CDS | 40.0% | |
| CGACTGCAATCGAATATATG+TGG | + | chr1.3:48045982-48046001 | MS.gene068514:CDS | 40.0% | |
| CGATGGAAAACCTAGTTGAT+AGG | + | chr1.3:48047288-48047307 | MS.gene068514:intron | 40.0% | |
| CGCTTGAAAATAACCCTGAA+AGG | - | chr1.3:48048059-48048078 | None:intergenic | 40.0% | |
| CTTCAACAAAACATCAGTGC+TGG | + | chr1.3:48048428-48048447 | MS.gene068514:CDS | 40.0% | |
| GACATGGCATACTAAGAGAA+TGG | + | chr1.3:48048273-48048292 | MS.gene068514:intron | 40.0% | |
| GATAATACCGGTGATGAAAG+AGG | + | chr1.3:48045163-48045182 | MS.gene068514:CDS | 40.0% | |
| GCTTACCCATATACCATAAC+AGG | - | chr1.3:48047029-48047048 | None:intergenic | 40.0% | |
| GGAAAAGTCAGTAGTTGCTT+TGG | - | chr1.3:48046790-48046809 | None:intergenic | 40.0% | |
| GGAAAGAAGGTTGTATAGAG+AGG | - | chr1.3:48047089-48047108 | None:intergenic | 40.0% | |
| GTGTCTTCTAAATCCATCGT+TGG | - | chr1.3:48046502-48046521 | None:intergenic | 40.0% | |
| GTGTTAACTGTGGAGTCTTT+GGG | - | chr1.3:48046760-48046779 | None:intergenic | 40.0% | |
| GTTCTATTGTAGTATCTGCC+GGG | + | chr1.3:48047824-48047843 | MS.gene068514:intron | 40.0% | |
| TACCATACCATCTTCCTTGT+CGG | + | chr1.3:48046036-48046055 | MS.gene068514:CDS | 40.0% | |
| TATTTCAATTGCAGCCTGCT+TGG | + | chr1.3:48045093-48045112 | MS.gene068514:intron | 40.0% | |
| TCACAAGATGAGTGAAGATC+AGG | + | chr1.3:48048183-48048202 | MS.gene068514:CDS | 40.0% | |
| TCTTTGCAATGGATGTCCTA+GGG | + | chr1.3:48044739-48044758 | MS.gene068514:CDS | 40.0% | |
| TGTTGACCTGAGTTCAGAAT+TGG | + | chr1.3:48048299-48048318 | MS.gene068514:intron | 40.0% | |
| TTCTACATACCCTTTCACAC+CGG | + | chr1.3:48046442-48046461 | MS.gene068514:intron | 40.0% | |
| TTCTTTGCAATGGATGTCCT+AGG | + | chr1.3:48044738-48044757 | MS.gene068514:CDS | 40.0% | |
| TTGTGCAGGCGAAATATTTC+TGG | + | chr1.3:48047677-48047696 | MS.gene068514:intron | 40.0% | |
| ! | AACATCAGTGCTGGAAAAGA+TGG | + | chr1.3:48048437-48048456 | MS.gene068514:CDS | 40.0% |
| ! | AACATGCGATTTTCCCTTTC+AGG | + | chr1.3:48048042-48048061 | MS.gene068514:intron | 40.0% |
| ! | ACATGCGATTTTCCCTTTCA+GGG | + | chr1.3:48048043-48048062 | MS.gene068514:intron | 40.0% |
| ! | ACTGCATTTTGTTCATGCTC+TGG | + | chr1.3:48046944-48046963 | MS.gene068514:intron | 40.0% |
| ! | AGTATCATGTTGGTTGCTTG+CGG | + | chr1.3:48045815-48045834 | MS.gene068514:CDS | 40.0% |
| ! | CCATTGATTATGTAGAGGAG+AGG | - | chr1.3:48047267-48047286 | None:intergenic | 40.0% |
| !! | CTGCACCTCTTTAAGATGTT+TGG | - | chr1.3:48048400-48048419 | None:intergenic | 40.0% |
| !! | GATGAAGTTTGTTGCATACC+TGG | + | chr1.3:48045004-48045023 | MS.gene068514:intron | 40.0% |
| !! | GCACTGATGTTTTGTTGAAG+AGG | - | chr1.3:48048428-48048447 | None:intergenic | 40.0% |
| !! | TATTTCTGGCCAAGAATTCG+GGG | + | chr1.3:48047691-48047710 | MS.gene068514:CDS | 40.0% |
| !! | TGTGAGAAGGAGTATCATGT+TGG | + | chr1.3:48045805-48045824 | MS.gene068514:CDS | 40.0% |
| ACACCCCCTTACACAAAATG+AGG | + | chr1.3:48046648-48046667 | MS.gene068514:intron | 45.0% | |
| ACGACCAGATATTGCAACGA+TGG | - | chr1.3:48046997-48047016 | None:intergenic | 45.0% | |
| AGGGGATGAGAGAGTAAAAG+AGG | - | chr1.3:48047247-48047266 | None:intergenic | 45.0% | |
| ATGTGTGCAGTATGTGGAGA+TGG | + | chr1.3:48044704-48044723 | MS.gene068514:CDS | 45.0% | |
| CACCCCCTTACACAAAATGA+GGG | + | chr1.3:48046649-48046668 | MS.gene068514:intron | 45.0% | |
| CACTTCTATCCATCGTTCAC+AGG | + | chr1.3:48047356-48047375 | MS.gene068514:intron | 45.0% | |
| CATCCACCCACTTCATATTC+TGG | - | chr1.3:48045232-48045251 | None:intergenic | 45.0% | |
| CATGATACTCCTTCTCACAC+TGG | - | chr1.3:48045804-48045823 | None:intergenic | 45.0% | |
| CGACCAGATATTGCAACGAT+GGG | - | chr1.3:48046996-48047015 | None:intergenic | 45.0% | |
| CGTGTCAACCGTATCATGAT+TGG | - | chr1.3:48045196-48045215 | None:intergenic | 45.0% | |
| CTCTCTACTTGTAGCTACCA+GGG | - | chr1.3:48047887-48047906 | None:intergenic | 45.0% | |
| CTGTGAACGATGGATAGAAG+TGG | - | chr1.3:48047358-48047377 | None:intergenic | 45.0% | |
| GAACCAGAATATGAAGTGGG+TGG | + | chr1.3:48045226-48045245 | MS.gene068514:CDS | 45.0% | |
| GACAGGGGATTATGTACGTA+TGG | + | chr1.3:48046082-48046101 | MS.gene068514:CDS | 45.0% | |
| GATCCCATCGTTGCAATATC+TGG | + | chr1.3:48046990-48047009 | MS.gene068514:CDS | 45.0% | |
| GCCAAAAATCCTAAGAAGCC+CGG | - | chr1.3:48047845-48047864 | None:intergenic | 45.0% | |
| GGAACAGAGAATATCGTGCA+AGG | - | chr1.3:48046304-48046323 | None:intergenic | 45.0% | |
| GGGGATTCTCTTGCTCATTT+AGG | + | chr1.3:48046832-48046851 | MS.gene068514:intron | 45.0% | |
| GTCACTGTCTAATACTGCAC+TGG | - | chr1.3:48044983-48045002 | None:intergenic | 45.0% | |
| GTGCTAGGCCAATCATGATA+CGG | + | chr1.3:48045185-48045204 | MS.gene068514:CDS | 45.0% | |
| TACACTGTGTAAACCCAAGC+AGG | - | chr1.3:48045110-48045129 | None:intergenic | 45.0% | |
| TCGTGACCTGATTCCTGTTA+TGG | + | chr1.3:48047013-48047032 | MS.gene068514:CDS | 45.0% | |
| TCTACATACCCTTTCACACC+GGG | + | chr1.3:48046443-48046462 | MS.gene068514:intron | 45.0% | |
| TCTCTACTTGTAGCTACCAG+GGG | - | chr1.3:48047886-48047905 | None:intergenic | 45.0% | |
| TGGAGCATGGAAAATGTTGG+TGG | + | chr1.3:48046475-48046494 | MS.gene068514:intron | 45.0% | |
| TGGCAAAGCAGTGTTAACTG+TGG | - | chr1.3:48046770-48046789 | None:intergenic | 45.0% | |
| TGTCAGACAGCCTATCAACT+AGG | - | chr1.3:48047301-48047320 | None:intergenic | 45.0% | |
| TTACACAGTGTACCAGAGAG+TGG | + | chr1.3:48045118-48045137 | MS.gene068514:CDS | 45.0% | |
| TTCCGACAAGGAAGATGGTA+TGG | - | chr1.3:48046041-48046060 | None:intergenic | 45.0% | |
| TTTACTACAGGAGCTTCCCA+AGG | + | chr1.3:48045940-48045959 | MS.gene068514:intron | 45.0% | |
| ! | AACGGCCCTCATTTTGTGTA+AGG | - | chr1.3:48046657-48046676 | None:intergenic | 45.0% |
| ! | AATCAGGAAGCATGAGGACA+GGG | + | chr1.3:48046066-48046085 | MS.gene068514:CDS | 45.0% |
| ! | ACCAACATTTTCCATGCTCC+AGG | - | chr1.3:48046476-48046495 | None:intergenic | 45.0% |
| ! | ACGGCCCTCATTTTGTGTAA+GGG | - | chr1.3:48046656-48046675 | None:intergenic | 45.0% |
| ! | ACTAGTGTCCTTATGGGCTA+TGG | - | chr1.3:48047525-48047544 | None:intergenic | 45.0% |
| ! | ACTGAAAGCACGAGGAAAGA+AGG | - | chr1.3:48047102-48047121 | None:intergenic | 45.0% |
| ! | GAGTCTTGGCAGAGTCTTTT+TGG | + | chr1.3:48047419-48047438 | MS.gene068514:intron | 45.0% |
| ! | GTATCATGTTGGTTGCTTGC+GGG | + | chr1.3:48045816-48045835 | MS.gene068514:CDS | 45.0% |
| ! | TAATCAGGAAGCATGAGGAC+AGG | + | chr1.3:48046065-48046084 | MS.gene068514:CDS | 45.0% |
| ! | TGCTCTGGTAATGTTTCGAC+AGG | + | chr1.3:48046959-48046978 | MS.gene068514:intron | 45.0% |
| !! | ATTTCTGGCCAAGAATTCGG+GGG | + | chr1.3:48047692-48047711 | MS.gene068514:CDS | 45.0% |
| !! | GCTACAAGTAGAGAGCATCA+AGG | + | chr1.3:48047892-48047911 | MS.gene068514:CDS | 45.0% |
| ACAGTGTACCAGAGAGTGGT+TGG | + | chr1.3:48045122-48045141 | MS.gene068514:CDS | 50.0% | |
| ACCCTTTCACACCGGGTTAT+AGG | + | chr1.3:48046450-48046469 | MS.gene068514:intron | 50.0% | |
| AGACAATGCCAACCACTCTC+TGG | - | chr1.3:48045133-48045152 | None:intergenic | 50.0% | |
| AGGAGCTTCCCAAGGATAAG+TGG | + | chr1.3:48045948-48045967 | MS.gene068514:intron | 50.0% | |
| AGTCTTTGGGCTGCCTTCAT+TGG | - | chr1.3:48046747-48046766 | None:intergenic | 50.0% | |
| CAATATTGCTGAGCTTCCCC+TGG | + | chr1.3:48047867-48047886 | MS.gene068514:CDS | 50.0% | |
| CCTAGCACCTCTTTCATCAC+CGG | - | chr1.3:48045173-48045192 | None:intergenic | 50.0% | |
| CGCTGTTCTCTTGCATAGAG+AGG | + | chr1.3:48048077-48048096 | MS.gene068514:CDS | 50.0% | |
| CTGCAGAACTCAGTTTCTGC+TGG | + | chr1.3:48046007-48046026 | MS.gene068514:CDS | 50.0% | |
| CTGCCTTCATTGGGTGTAAG+GGG | - | chr1.3:48046737-48046756 | None:intergenic | 50.0% | |
| GCAGCAGCTCGTGAAAGTAA+CGG | - | chr1.3:48046169-48046188 | None:intergenic | 50.0% | |
| GCCTATAACCCGGTGTGAAA+GGG | - | chr1.3:48046454-48046473 | None:intergenic | 50.0% | |
| GCCTGGAGCATGGAAAATGT+TGG | + | chr1.3:48046472-48046491 | MS.gene068514:intron | 50.0% | |
| GCTCTCTACTTGTAGCTACC+AGG | - | chr1.3:48047888-48047907 | None:intergenic | 50.0% | |
| GCTGCCTTCATTGGGTGTAA+GGG | - | chr1.3:48046738-48046757 | None:intergenic | 50.0% | |
| GGACATTGGGCTATGTGAGT+TGG | + | chr1.3:48045837-48045856 | MS.gene068514:CDS | 50.0% | |
| GGGGAAGCTCAGCAATATTG+CGG | - | chr1.3:48047867-48047886 | None:intergenic | 50.0% | |
| GTCTTTGGGCTGCCTTCATT+GGG | - | chr1.3:48046746-48046765 | None:intergenic | 50.0% | |
| GTGTAGTGCCATAGCCCATA+AGG | + | chr1.3:48047514-48047533 | MS.gene068514:intron | 50.0% | |
| TAGTATCTGCCGGGCTTCTT+AGG | + | chr1.3:48047833-48047852 | MS.gene068514:CDS | 50.0% | |
| TCACCTGCATGAAAAGCCCT+AGG | - | chr1.3:48044758-48044777 | None:intergenic | 50.0% | |
| TCGTGCTTTCAGTTTCCCAG+TGG | + | chr1.3:48047109-48047128 | MS.gene068514:intron | 50.0% | |
| TGCCTTCATTGGGTGTAAGG+GGG | - | chr1.3:48046736-48046755 | None:intergenic | 50.0% | |
| TGGATGCGTTGTTTGCAGGT+AGG | + | chr1.3:48045246-48045265 | MS.gene068514:intron | 50.0% | |
| TGTGCAGTATGTGGAGATGG+AGG | + | chr1.3:48044707-48044726 | MS.gene068514:CDS | 50.0% | |
| TTGGTTGCTTGCGGGACATT+GGG | + | chr1.3:48045824-48045843 | MS.gene068514:CDS | 50.0% | |
| ! | ACTGGGAAACTGAAAGCACG+AGG | - | chr1.3:48047110-48047129 | None:intergenic | 50.0% |
| ! | AGTGCTGGAAAAGATGGTGC+AGG | + | chr1.3:48048443-48048462 | MS.gene068514:CDS | 50.0% |
| ! | ATCAGGAAGCATGAGGACAG+GGG | + | chr1.3:48046067-48046086 | MS.gene068514:CDS | 50.0% |
| ! | CGGCCCTCATTTTGTGTAAG+GGG | - | chr1.3:48046655-48046674 | None:intergenic | 50.0% |
| ! | GCCGGGCTTCTTAGGATTTT+TGG | + | chr1.3:48047841-48047860 | MS.gene068514:CDS | 50.0% |
| ! | GGCCCTCATTTTGTGTAAGG+GGG | - | chr1.3:48046654-48046673 | None:intergenic | 50.0% |
| ! | TGTCCTAGGGCTTTTCATGC+AGG | + | chr1.3:48044752-48044771 | MS.gene068514:CDS | 50.0% |
| !! | AAATGTTGGTGGCCCAACGA+TGG | + | chr1.3:48046486-48046505 | MS.gene068514:intron | 50.0% |
| CACCCCCTTACACCCAATGA+AGG | + | chr1.3:48046731-48046750 | MS.gene068514:intron | 55.0% | |
| CAGGGGATGCAGAGTCCATT+TGG | + | chr1.3:48048143-48048162 | MS.gene068514:CDS | 55.0% | |
| CATGCTCCAGGCCTATAACC+CGG | - | chr1.3:48046464-48046483 | None:intergenic | 55.0% | |
| GGCCTATAACCCGGTGTGAA+AGG | - | chr1.3:48046455-48046474 | None:intergenic | 55.0% | |
| GGCTGCCTTCATTGGGTGTA+AGG | - | chr1.3:48046739-48046758 | None:intergenic | 55.0% | |
| GTTGGTTGCTTGCGGGACAT+TGG | + | chr1.3:48045823-48045842 | MS.gene068514:CDS | 55.0% | |
| TGGGTGGATGCGTTGTTTGC+AGG | + | chr1.3:48045242-48045261 | MS.gene068514:CDS | 55.0% | |
| TTCACACCGGGTTATAGGCC+TGG | + | chr1.3:48046455-48046474 | MS.gene068514:intron | 55.0% | |
| !! | CCGGTGATGAAAGAGGTGCT+AGG | + | chr1.3:48045170-48045189 | MS.gene068514:CDS | 55.0% |
| ACTCTGCATCCCCTGCAGCA+GGG | - | chr1.3:48048138-48048157 | None:intergenic | 60.0% | |
| CGGGTTATAGGCCTGGAGCA+TGG | + | chr1.3:48046462-48046481 | MS.gene068514:intron | 60.0% | |
| AAGCTGGTGCTCCCTGCTGC+AGG | + | chr1.3:48048124-48048143 | MS.gene068514:CDS | 65.0% | |
| AGCTGGTGCTCCCTGCTGCA+GGG | + | chr1.3:48048125-48048144 | MS.gene068514:CDS | 65.0% | |
| GACTCTGCATCCCCTGCAGC+AGG | - | chr1.3:48048139-48048158 | None:intergenic | 65.0% | |
| GCTGGTGCTCCCTGCTGCAG+GGG | + | chr1.3:48048126-48048145 | MS.gene068514:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 48044704 | 48048476 | 48044704 | ID=MS.gene068514 |
| chr1.3 | mRNA | 48044704 | 48048476 | 48044704 | ID=MS.gene068514.t1;Parent=MS.gene068514 |
| chr1.3 | exon | 48044704 | 48044773 | 48044704 | ID=MS.gene068514.t1.exon1;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48044704 | 48044773 | 48044704 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48045107 | 48045263 | 48045107 | ID=MS.gene068514.t1.exon2;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48045107 | 48045263 | 48045107 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48045663 | 48045720 | 48045663 | ID=MS.gene068514.t1.exon3;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48045663 | 48045720 | 48045663 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48045805 | 48045861 | 48045805 | ID=MS.gene068514.t1.exon4;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48045805 | 48045861 | 48045805 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48045950 | 48046198 | 48045950 | ID=MS.gene068514.t1.exon5;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48045950 | 48046198 | 48045950 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48046981 | 48047042 | 48046981 | ID=MS.gene068514.t1.exon6;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48046981 | 48047042 | 48046981 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48047685 | 48047741 | 48047685 | ID=MS.gene068514.t1.exon7;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48047685 | 48047741 | 48047685 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48047825 | 48047918 | 48047825 | ID=MS.gene068514.t1.exon8;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48047825 | 48047918 | 48047825 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48048064 | 48048204 | 48048064 | ID=MS.gene068514.t1.exon9;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48048064 | 48048204 | 48048064 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| chr1.3 | exon | 48048393 | 48048476 | 48048393 | ID=MS.gene068514.t1.exon10;Parent=MS.gene068514.t1 |
| chr1.3 | CDS | 48048393 | 48048476 | 48048393 | ID=cds.MS.gene068514.t1;Parent=MS.gene068514.t1 |
| Gene Sequence |
| Protein sequence |
