Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07882.t1 | XP_004510438.1 | 97.1 | 204 | 6 | 0 | 1 | 204 | 21 | 224 | 1.50E-47 | 199.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07882.t1 | Q9SKI2 | 88.3 | 205 | 22 | 2 | 1 | 204 | 22 | 225 | 5.7e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07882.t1 | A0A1S2YV57 | 97.1 | 204 | 6 | 0 | 1 | 204 | 21 | 224 | 1.1e-47 | 199.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene07882 | 0.816177 | 6.33E-52 | -1.69E-46 |
| MS.gene049230 | MS.gene07882 | 0.814548 | 1.46E-51 | -1.69E-46 |
| MS.gene049378 | MS.gene07882 | 0.828727 | 7.65E-55 | -1.69E-46 |
| MS.gene049756 | MS.gene07882 | 0.817966 | 2.51E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene07882 | 0.828915 | 6.90E-55 | -1.69E-46 |
| MS.gene050227 | MS.gene07882 | 0.836519 | 8.92E-57 | -1.69E-46 |
| MS.gene050228 | MS.gene07882 | 0.839724 | 1.33E-57 | -1.69E-46 |
| MS.gene050303 | MS.gene07882 | 0.804232 | 2.38E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene07882 | 0.832651 | 8.37E-56 | -1.69E-46 |
| MS.gene050605 | MS.gene07882 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene07882 | -0.812279 | 4.59E-51 | -1.69E-46 |
| MS.gene050642 | MS.gene07882 | 0.831032 | 2.10E-55 | -1.69E-46 |
| MS.gene050719 | MS.gene07882 | 0.846991 | 1.53E-59 | -1.69E-46 |
| MS.gene050721 | MS.gene07882 | 0.848937 | 4.46E-60 | -1.69E-46 |
| MS.gene050724 | MS.gene07882 | 0.832837 | 7.53E-56 | -1.69E-46 |
| MS.gene050750 | MS.gene07882 | 0.804793 | 1.82E-49 | -1.69E-46 |
| MS.gene050780 | MS.gene07882 | 0.802795 | 4.74E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene07882 | 0.811879 | 5.61E-51 | -1.69E-46 |
| MS.gene050953 | MS.gene07882 | 0.805566 | 1.25E-49 | -1.69E-46 |
| MS.gene050987 | MS.gene07882 | 0.815439 | 9.24E-52 | -1.69E-46 |
| MS.gene051243 | MS.gene07882 | 0.823065 | 1.69E-53 | -1.69E-46 |
| MS.gene051344 | MS.gene07882 | 0.801048 | 1.08E-48 | -1.69E-46 |
| MS.gene051349 | MS.gene07882 | 0.835967 | 1.23E-56 | -1.69E-46 |
| MS.gene051452 | MS.gene07882 | 0.805576 | 1.25E-49 | -1.69E-46 |
| MS.gene051757 | MS.gene07882 | 0.815434 | 9.26E-52 | -1.69E-46 |
| MS.gene051983 | MS.gene07882 | 0.813927 | 2.00E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene07882 | 0.836682 | 8.11E-57 | -1.69E-46 |
| MS.gene052286 | MS.gene07882 | 0.827214 | 1.77E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene07882 | 0.816863 | 4.44E-52 | -1.69E-46 |
| MS.gene052309 | MS.gene07882 | -0.806287 | 8.85E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene07882 | 0.833196 | 6.13E-56 | -1.69E-46 |
| MS.gene052426 | MS.gene07882 | 0.832294 | 1.03E-55 | -1.69E-46 |
| MS.gene052863 | MS.gene07882 | 0.810176 | 1.31E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene07882 | 0.811844 | 5.71E-51 | -1.69E-46 |
| MS.gene053216 | MS.gene07882 | 0.805988 | 1.02E-49 | -1.69E-46 |
| MS.gene054472 | MS.gene07882 | 0.808619 | 2.83E-50 | -1.69E-46 |
| MS.gene054658 | MS.gene07882 | 0.814146 | 1.79E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene07882 | 0.829393 | 5.28E-55 | -1.69E-46 |
| MS.gene05510 | MS.gene07882 | 0.832872 | 7.38E-56 | -1.69E-46 |
| MS.gene055623 | MS.gene07882 | 0.82046 | 6.78E-53 | -1.69E-46 |
| MS.gene055701 | MS.gene07882 | 0.810919 | 9.07E-51 | -1.69E-46 |
| MS.gene056506 | MS.gene07882 | 0.83401 | 3.84E-56 | -1.69E-46 |
| MS.gene056760 | MS.gene07882 | 0.809098 | 2.24E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene07882 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene057026 | MS.gene07882 | 0.821925 | 3.12E-53 | -1.69E-46 |
| MS.gene057079 | MS.gene07882 | 0.800359 | 1.50E-48 | -1.69E-46 |
| MS.gene057140 | MS.gene07882 | 0.83489 | 2.31E-56 | -1.69E-46 |
| MS.gene05761 | MS.gene07882 | 0.81954 | 1.10E-52 | -1.69E-46 |
| MS.gene05795 | MS.gene07882 | 0.809494 | 1.84E-50 | -1.69E-46 |
| MS.gene058146 | MS.gene07882 | 0.806914 | 6.53E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene07882 | 0.810473 | 1.13E-50 | -1.69E-46 |
| MS.gene058595 | MS.gene07882 | 0.803565 | 3.28E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene07882 | 0.803874 | 2.83E-49 | -1.69E-46 |
| MS.gene059249 | MS.gene07882 | 0.838181 | 3.35E-57 | -1.69E-46 |
| MS.gene059317 | MS.gene07882 | 0.833145 | 6.31E-56 | -1.69E-46 |
| MS.gene059569 | MS.gene07882 | 0.807672 | 4.51E-50 | -1.69E-46 |
| MS.gene059830 | MS.gene07882 | 0.803249 | 3.81E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene07882 | 0.800286 | 1.55E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene07882 | 0.863699 | 2.07E-64 | -1.69E-46 |
| MS.gene060572 | MS.gene07882 | 0.816974 | 4.19E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene07882 | 0.836814 | 7.50E-57 | -1.69E-46 |
| MS.gene060683 | MS.gene07882 | 0.82788 | 1.23E-54 | -1.69E-46 |
| MS.gene060685 | MS.gene07882 | 0.823368 | 1.44E-53 | -1.69E-46 |
| MS.gene060802 | MS.gene07882 | 0.809098 | 2.24E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene07882 | 0.820686 | 6.02E-53 | -1.69E-46 |
| MS.gene060998 | MS.gene07882 | 0.858635 | 7.20E-63 | -1.69E-46 |
| MS.gene061040 | MS.gene07882 | -0.820221 | 7.69E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07882.t1 | MTR_8g019700 | 98.529 | 204 | 3 | 0 | 1 | 204 | 21 | 224 | 2.96e-144 | 400 |
| MS.gene07882.t1 | MTR_2g041190 | 86.275 | 204 | 27 | 1 | 1 | 204 | 21 | 223 | 1.02e-104 | 301 |
| MS.gene07882.t1 | MTR_1g069715 | 42.347 | 196 | 102 | 2 | 7 | 202 | 491 | 675 | 7.94e-42 | 149 |
| MS.gene07882.t1 | MTR_2g047875 | 40.394 | 203 | 108 | 3 | 5 | 204 | 24 | 216 | 2.55e-38 | 132 |
| MS.gene07882.t1 | MTR_7g097170 | 46.269 | 201 | 97 | 2 | 2 | 202 | 21 | 210 | 1.22e-37 | 130 |
| MS.gene07882.t1 | MTR_4g057565 | 27.586 | 203 | 144 | 3 | 2 | 202 | 25 | 226 | 6.59e-15 | 70.9 |
| MS.gene07882.t1 | MTR_2g100420 | 25.294 | 170 | 115 | 2 | 33 | 202 | 45 | 202 | 3.72e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene07882.t1 | AT2G06530 | 89.268 | 205 | 20 | 2 | 1 | 204 | 1 | 204 | 1.98e-114 | 325 |
| MS.gene07882.t1 | AT2G06530 | 89.268 | 205 | 20 | 2 | 1 | 204 | 22 | 225 | 6.11e-114 | 324 |
| MS.gene07882.t1 | AT1G03950 | 43.284 | 201 | 103 | 3 | 2 | 202 | 21 | 210 | 8.39e-48 | 155 |
| MS.gene07882.t1 | AT5G44560 | 40.000 | 200 | 119 | 1 | 5 | 204 | 4 | 202 | 4.21e-43 | 144 |
| MS.gene07882.t1 | AT5G44560 | 40.000 | 200 | 119 | 1 | 5 | 204 | 24 | 222 | 7.03e-43 | 144 |
| MS.gene07882.t1 | AT5G44560 | 43.226 | 155 | 88 | 0 | 5 | 159 | 24 | 178 | 6.40e-40 | 135 |
| MS.gene07882.t1 | AT5G44560 | 38.655 | 119 | 72 | 1 | 5 | 122 | 24 | 142 | 1.33e-21 | 87.0 |
| MS.gene07882.t1 | AT5G22950 | 27.805 | 205 | 143 | 3 | 2 | 202 | 25 | 228 | 5.24e-14 | 68.6 |
| MS.gene07882.t1 | AT1G17730 | 25.000 | 196 | 133 | 2 | 7 | 202 | 19 | 200 | 6.07e-13 | 65.1 |
Find 47 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTGTTGCTTTGAGAATTC+AGG | 0.273393 | 8.3:-70846558 | MS.gene07882:intron |
| CAAGCTTAAATCACAACTTC+AGG | 0.310848 | 8.3:-70846579 | MS.gene07882:CDS |
| AAATACCATTTGTCCTTGTT+TGG | 0.313748 | 8.3:+70847321 | None:intergenic |
| CTGCGCCAGCAGCAAAGAAC+AGG | 0.338116 | 8.3:-70845386 | MS.gene07882:CDS |
| TGCTGCTGGCGCAGCGGTTG+AGG | 0.345574 | 8.3:+70845395 | None:intergenic |
| TTAGGGTGCTGTGAGGGTTA+TGG | 0.358019 | 8.3:-70846645 | MS.gene07882:intron |
| ATCATCATTGCCCGTTGGTT+CGG | 0.375176 | 8.3:+70845353 | None:intergenic |
| GCAACCCTGTTCTTTGCTGC+TGG | 0.393522 | 8.3:+70845381 | None:intergenic |
| GGAACTTGTTTCTGAGGTAA+TGG | 0.405606 | 8.3:-70845945 | MS.gene07882:CDS |
| GAACTTGTTTCTGAGGTAAT+GGG | 0.408793 | 8.3:-70845944 | MS.gene07882:CDS |
| AAGCAATGGGTCAAATGAAT+AGG | 0.409703 | 8.3:-70846030 | MS.gene07882:CDS |
| TGCATTATCTTCTGTAAAGA+AGG | 0.410358 | 8.3:+70845995 | None:intergenic |
| GCAATTGATGATGCTTTAGA+AGG | 0.423361 | 8.3:-70845917 | MS.gene07882:CDS |
| CTGAAATCTACTCAAGCAAT+GGG | 0.427818 | 8.3:-70846076 | MS.gene07882:CDS |
| AGCAAAGAACAGGGTTGCTC+AGG | 0.453290 | 8.3:-70845376 | MS.gene07882:CDS |
| GTTGCTCAGGCCGAACCAAC+GGG | 0.456495 | 8.3:-70845363 | MS.gene07882:CDS |
| GAATGCCAAACAAGGACAAA+TGG | 0.480489 | 8.3:-70847326 | MS.gene07882:intron |
| AAAGGAGTTACTAAAGCAAT+GGG | 0.498174 | 8.3:-70846043 | MS.gene07882:CDS |
| TGGAATAGATGATGATCTAC+AGG | 0.501443 | 8.3:-70845328 | MS.gene07882:CDS |
| GCAGCGGTTGAGGTTGATGC+AGG | 0.505074 | 8.3:+70845405 | None:intergenic |
| AGTCTATTAGAGAAATTGAA+AGG | 0.508512 | 8.3:-70847402 | MS.gene07882:CDS |
| TGAAAGGCAGAATGAGAAGA+TGG | 0.511267 | 8.3:-70845966 | MS.gene07882:CDS |
| AGATAATGCAAGAGTTTGAA+AGG | 0.512294 | 8.3:-70845982 | MS.gene07882:CDS |
| AAGCTTAAATCACAACTTCA+GGG | 0.512790 | 8.3:-70846578 | MS.gene07882:CDS |
| GAAAGGAGTTACTAAAGCAA+TGG | 0.516989 | 8.3:-70846044 | MS.gene07882:CDS |
| TTTAGAAGGTGATGAAGAAG+AGG | 0.518323 | 8.3:-70845903 | MS.gene07882:CDS |
| GAACCAACGGGCAATGATGA+TGG | 0.518414 | 8.3:-70845351 | MS.gene07882:CDS |
| GGTTGCTCAGGCCGAACCAA+CGG | 0.520072 | 8.3:-70845364 | MS.gene07882:CDS |
| TGCTGTGAGGGTTATGGCCA+AGG | 0.523944 | 8.3:-70846639 | MS.gene07882:CDS |
| GCGAGTTCTGATAAGATCCT+TGG | 0.525743 | 8.3:+70846622 | None:intergenic |
| GTCTATTAGAGAAATTGAAA+GGG | 0.532893 | 8.3:-70847401 | MS.gene07882:CDS |
| CCACCATCATCATTGCCCGT+TGG | 0.548023 | 8.3:+70845348 | None:intergenic |
| AGGCTAGGTTAGATAACCTA+AGG | 0.562667 | 8.3:-70845308 | MS.gene07882:CDS |
| AATTTGTTAGGGTGCTGTGA+GGG | 0.568995 | 8.3:-70846651 | MS.gene07882:intron |
| AATCAAGTTCTTGATGAGAT+CGG | 0.569717 | 8.3:-70845860 | MS.gene07882:CDS |
| GAAGATGGAACTTGTTTCTG+AGG | 0.576457 | 8.3:-70845951 | MS.gene07882:CDS |
| CAATTTGTTAGGGTGCTGTG+AGG | 0.590012 | 8.3:-70846652 | MS.gene07882:intron |
| GTTCTTTGCTGCTGGCGCAG+CGG | 0.591986 | 8.3:+70845389 | None:intergenic |
| TGCGCCAGCAGCAAAGAACA+GGG | 0.604491 | 8.3:-70845385 | MS.gene07882:CDS |
| ACTGAAATCTACTCAAGCAA+TGG | 0.611599 | 8.3:-70846077 | MS.gene07882:CDS |
| GAAATCTACTCAAGCAATGG+GGG | 0.624835 | 8.3:-70846074 | MS.gene07882:CDS |
| ATTAAGAAGAATGCCAAACA+AGG | 0.625704 | 8.3:-70847334 | MS.gene07882:CDS |
| TAGATGATGATCTACAGGCT+AGG | 0.626372 | 8.3:-70845323 | MS.gene07882:CDS |
| CCAACGGGCAATGATGATGG+TGG | 0.626681 | 8.3:-70845348 | MS.gene07882:CDS |
| GAAATTGAAAGGGAAAGACA+AGG | 0.636711 | 8.3:-70847391 | MS.gene07882:CDS |
| CGGAATCGATATCAACTCTG+AGG | 0.660467 | 8.3:-70845840 | MS.gene07882:intron |
| TGAAATCTACTCAAGCAATG+GGG | 0.673116 | 8.3:-70846075 | MS.gene07882:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTGATAATTACTTTTA+GGG | - | chr8.3:70845869-70845888 | MS.gene07882:CDS | 10.0% |
| !!! | AGTATACATAAAAACTTTTA+TGG | + | chr8.3:70846985-70847004 | None:intergenic | 15.0% |
| !!! | CAAAATTGATAATTACTTTT+AGG | - | chr8.3:70845868-70845887 | MS.gene07882:CDS | 15.0% |
| !! | AATAAGCTAAATACATCTTA+AGG | - | chr8.3:70847087-70847106 | MS.gene07882:intron | 20.0% |
| !! | ACATTCAAATTAAACCAAAA+CGG | + | chr8.3:70845752-70845771 | None:intergenic | 20.0% |
| !! | CTAAAAACAAAAAACACTAA+TGG | - | chr8.3:70845686-70845705 | MS.gene07882:intron | 20.0% |
| !!! | AGTTTTGTTTCAATTTGTTA+GGG | - | chr8.3:70846049-70846068 | MS.gene07882:CDS | 20.0% |
| !!! | ATTAAGTTGTTTATCCAAAA+AGG | + | chr8.3:70846952-70846971 | None:intergenic | 20.0% |
| !!! | ATTGTGGTTTTAATATAGTA+GGG | - | chr8.3:70845972-70845991 | MS.gene07882:CDS | 20.0% |
| !!! | TAGTTTTGTTTCAATTTGTT+AGG | - | chr8.3:70846048-70846067 | MS.gene07882:CDS | 20.0% |
| !!! | TGTTTTAGTTTCATAGTTAA+CGG | - | chr8.3:70845769-70845788 | MS.gene07882:intron | 20.0% |
| !!! | TTAGTTGTATATTTTGTTGT+AGG | - | chr8.3:70845467-70845486 | MS.gene07882:intron | 20.0% |
| ! | AAACAAAAAACACTAATGGT+AGG | - | chr8.3:70845690-70845709 | MS.gene07882:intron | 25.0% |
| ! | AACAAAAAACACTAATGGTA+GGG | - | chr8.3:70845691-70845710 | MS.gene07882:intron | 25.0% |
| ! | AACTAAGTGCAATAGAAAAA+TGG | + | chr8.3:70845453-70845472 | None:intergenic | 25.0% |
| ! | ACAAATAAGTCAATTCAAAC+AGG | - | chr8.3:70847179-70847198 | MS.gene07882:intron | 25.0% |
| ! | ACTTATTTGTGTTTATCTAC+TGG | + | chr8.3:70847169-70847188 | None:intergenic | 25.0% |
| ! | AGAAGCTGTAACAATAATAA+TGG | - | chr8.3:70847236-70847255 | MS.gene07882:intron | 25.0% |
| ! | AGTCTATTAGAGAAATTGAA+AGG | - | chr8.3:70845309-70845328 | MS.gene07882:CDS | 25.0% |
| ! | CAAAAAACACAATAATTGCA+GGG | + | chr8.3:70845510-70845529 | None:intergenic | 25.0% |
| ! | GTCTATTAGAGAAATTGAAA+GGG | - | chr8.3:70845310-70845329 | MS.gene07882:CDS | 25.0% |
| !! | CAATAGTTTTTGAATTTGCA+AGG | + | chr8.3:70845570-70845589 | None:intergenic | 25.0% |
| !! | TGTAAAACTTTTCAATCTGA+TGG | + | chr8.3:70846114-70846133 | None:intergenic | 25.0% |
| !!! | AATAATAGACTAGTCCTTTT+TGG | - | chr8.3:70846935-70846954 | MS.gene07882:intron | 25.0% |
| !!! | GATTGTGGTTTTAATATAGT+AGG | - | chr8.3:70845971-70845990 | MS.gene07882:CDS | 25.0% |
| !!! | TGAGAAGTTTATTGCTTTTA+AGG | - | chr8.3:70845949-70845968 | MS.gene07882:CDS | 25.0% |
| !!! | TTTATTGCTTTTAAGGATTG+TGG | - | chr8.3:70845956-70845975 | MS.gene07882:CDS | 25.0% |
| AAAGGAGTTACTAAAGCAAT+GGG | - | chr8.3:70846668-70846687 | MS.gene07882:intron | 30.0% | |
| AAATACCATTTGTCCTTGTT+TGG | + | chr8.3:70845393-70845412 | None:intergenic | 30.0% | |
| AACTTATCTGCTAAAATCCT+AGG | + | chr8.3:70846242-70846261 | None:intergenic | 30.0% | |
| AAGCTTAAATCACAACTTCA+GGG | - | chr8.3:70846133-70846152 | MS.gene07882:intron | 30.0% | |
| AATCAAGTTCTTGATGAGAT+CGG | - | chr8.3:70846851-70846870 | MS.gene07882:intron | 30.0% | |
| AGATAATGCAAGAGTTTGAA+AGG | - | chr8.3:70846729-70846748 | MS.gene07882:intron | 30.0% | |
| ATTAAGAAGAATGCCAAACA+AGG | - | chr8.3:70845377-70845396 | MS.gene07882:CDS | 30.0% | |
| CCAAAAAACACAATAATTGC+AGG | + | chr8.3:70845511-70845530 | None:intergenic | 30.0% | |
| CTCAAACAAAAGAACTTACA+CGG | + | chr8.3:70845541-70845560 | None:intergenic | 30.0% | |
| GAACAGGTATGTAATATGTT+TGG | - | chr8.3:70846006-70846025 | MS.gene07882:CDS | 30.0% | |
| GGTATGTAATATGTTTGGTT+TGG | - | chr8.3:70846011-70846030 | MS.gene07882:CDS | 30.0% | |
| GTCTGTAACATTACTTAATC+AGG | + | chr8.3:70845636-70845655 | None:intergenic | 30.0% | |
| TGCATTATCTTCTGTAAAGA+AGG | + | chr8.3:70846719-70846738 | None:intergenic | 30.0% | |
| TTTCATGCTCATTCATACTA+TGG | - | chr8.3:70846500-70846519 | MS.gene07882:intron | 30.0% | |
| ! | AACGGTGTTAATTGTTATCA+GGG | - | chr8.3:70845787-70845806 | MS.gene07882:intron | 30.0% |
| ! | GTAAGTAACTGTGTTGTTAA+GGG | - | chr8.3:70845817-70845836 | MS.gene07882:intron | 30.0% |
| ! | TAACGGTGTTAATTGTTATC+AGG | - | chr8.3:70845786-70845805 | MS.gene07882:intron | 30.0% |
| ! | TCGTTGTATTATATCCGTTT+TGG | - | chr8.3:70845735-70845754 | MS.gene07882:intron | 30.0% |
| ! | TGTAAGTAACTGTGTTGTTA+AGG | - | chr8.3:70845816-70845835 | MS.gene07882:intron | 30.0% |
| !!! | CCTGCAATTATTGTGTTTTT+TGG | - | chr8.3:70845508-70845527 | MS.gene07882:intron | 30.0% |
| !!! | TGTTTTAACTACGTCATATG+CGG | - | chr8.3:70845588-70845607 | MS.gene07882:intron | 30.0% |
| AAGCAATGGGTCAAATGAAT+AGG | - | chr8.3:70846681-70846700 | MS.gene07882:intron | 35.0% | |
| ACTGAAATCTACTCAAGCAA+TGG | - | chr8.3:70846634-70846653 | MS.gene07882:CDS | 35.0% | |
| CAAGCTTAAATCACAACTTC+AGG | - | chr8.3:70846132-70846151 | MS.gene07882:intron | 35.0% | |
| CAGTGTCTACAATTAATCTC+AGG | + | chr8.3:70846618-70846637 | None:intergenic | 35.0% | |
| CATTACTTAATCAGGCTACA+TGG | + | chr8.3:70845628-70845647 | None:intergenic | 35.0% | |
| CCACTAGTAATGAAAGAAGA+AGG | + | chr8.3:70845425-70845444 | None:intergenic | 35.0% | |
| CCTTCTTCTTTCATTACTAG+TGG | - | chr8.3:70845422-70845441 | MS.gene07882:intron | 35.0% | |
| CTGAAATCTACTCAAGCAAT+GGG | - | chr8.3:70846635-70846654 | MS.gene07882:CDS | 35.0% | |
| GAAAGGAGTTACTAAAGCAA+TGG | - | chr8.3:70846667-70846686 | MS.gene07882:intron | 35.0% | |
| GAAATTGAAAGGGAAAGACA+AGG | - | chr8.3:70845320-70845339 | MS.gene07882:CDS | 35.0% | |
| GCTACATGGCGTATTATATT+GGG | + | chr8.3:70845614-70845633 | None:intergenic | 35.0% | |
| TACAGCTTCTTTCTAAGCTA+GGG | + | chr8.3:70847226-70847245 | None:intergenic | 35.0% | |
| TGAAATCTACTCAAGCAATG+GGG | - | chr8.3:70846636-70846655 | MS.gene07882:CDS | 35.0% | |
| TGGAATAGATGATGATCTAC+AGG | - | chr8.3:70847383-70847402 | MS.gene07882:CDS | 35.0% | |
| TGTCTACAATTAATCTCAGG+AGG | + | chr8.3:70846615-70846634 | None:intergenic | 35.0% | |
| TTACAGCTTCTTTCTAAGCT+AGG | + | chr8.3:70847227-70847246 | None:intergenic | 35.0% | |
| TTTAGAAGGTGATGAAGAAG+AGG | - | chr8.3:70846808-70846827 | MS.gene07882:intron | 35.0% | |
| ! | TGAGCATGAAAGTATACACA+AGG | + | chr8.3:70846491-70846510 | None:intergenic | 35.0% |
| !! | CTTATTTTCATAAGCTCGCT+AGG | + | chr8.3:70847073-70847092 | None:intergenic | 35.0% |
| !! | GAACTTGTTTCTGAGGTAAT+GGG | - | chr8.3:70846767-70846786 | MS.gene07882:intron | 35.0% |
| !! | GCAATTGATGATGCTTTAGA+AGG | - | chr8.3:70846794-70846813 | MS.gene07882:intron | 35.0% |
| !! | GGATTTTAGCAGATAAGTTG+AGG | - | chr8.3:70846243-70846262 | MS.gene07882:intron | 35.0% |
| !! | TAGGGTGTTGTTATTTGAAC+AGG | - | chr8.3:70845990-70846009 | MS.gene07882:CDS | 35.0% |
| ACAGCTTCTTTCTAAGCTAG+GGG | + | chr8.3:70847225-70847244 | None:intergenic | 40.0% | |
| AGGCTAGGTTAGATAACCTA+AGG | - | chr8.3:70847403-70847422 | MS.gene07882:CDS | 40.0% | |
| CTCGTTATGTATCTGCAATG+AGG | + | chr8.3:70846468-70846487 | None:intergenic | 40.0% | |
| GAAATCTACTCAAGCAATGG+GGG | - | chr8.3:70846637-70846656 | MS.gene07882:CDS | 40.0% | |
| GAATGCCAAACAAGGACAAA+TGG | - | chr8.3:70845385-70845404 | MS.gene07882:CDS | 40.0% | |
| GGCTACATGGCGTATTATAT+TGG | + | chr8.3:70845615-70845634 | None:intergenic | 40.0% | |
| TAGATGATGATCTACAGGCT+AGG | - | chr8.3:70847388-70847407 | MS.gene07882:CDS | 40.0% | |
| TGAAAGGCAGAATGAGAAGA+TGG | - | chr8.3:70846745-70846764 | MS.gene07882:intron | 40.0% | |
| TTGAAGCTTATTGTGCTCCT+AGG | - | chr8.3:70846222-70846241 | MS.gene07882:intron | 40.0% | |
| !! | AATTTGTTAGGGTGCTGTGA+GGG | - | chr8.3:70846060-70846079 | MS.gene07882:CDS | 40.0% |
| !! | GAAGATGGAACTTGTTTCTG+AGG | - | chr8.3:70846760-70846779 | MS.gene07882:intron | 40.0% |
| !! | GGAACTTGTTTCTGAGGTAA+TGG | - | chr8.3:70846766-70846785 | MS.gene07882:intron | 40.0% |
| CGGAATCGATATCAACTCTG+AGG | - | chr8.3:70846871-70846890 | MS.gene07882:intron | 45.0% | |
| GACAAGTATCCGACATGTGT+GGG | - | chr8.3:70846337-70846356 | MS.gene07882:intron | 45.0% | |
| TGACAAGTATCCGACATGTG+TGG | - | chr8.3:70846336-70846355 | MS.gene07882:intron | 45.0% | |
| ! | ATCATCATTGCCCGTTGGTT+CGG | + | chr8.3:70847361-70847380 | None:intergenic | 45.0% |
| ! | GCGAGTTCTGATAAGATCCT+TGG | + | chr8.3:70846092-70846111 | None:intergenic | 45.0% |
| !! | CAATTTGTTAGGGTGCTGTG+AGG | - | chr8.3:70846059-70846078 | MS.gene07882:CDS | 45.0% |
| !! | GGGTGTTGCTTTGAGAATTC+AGG | - | chr8.3:70846153-70846172 | MS.gene07882:intron | 45.0% |
| !! | TTAAAAATTATAAATTTAAC+AGG | + | chr8.3:70846552-70846571 | None:intergenic | 5.0% |
| ACCGACAGAGACATGGATAC+CGG | + | chr8.3:70846444-70846463 | None:intergenic | 50.0% | |
| AGCAAAGAACAGGGTTGCTC+AGG | - | chr8.3:70847335-70847354 | MS.gene07882:CDS | 50.0% | |
| ATCCGACATGTGTGGGCATT+GGG | - | chr8.3:70846344-70846363 | MS.gene07882:intron | 50.0% | |
| GAACCAACGGGCAATGATGA+TGG | - | chr8.3:70847360-70847379 | MS.gene07882:CDS | 50.0% | |
| TATCCGACATGTGTGGGCAT+TGG | - | chr8.3:70846343-70846362 | MS.gene07882:intron | 50.0% | |
| TCCGGTATCCATGTCTCTGT+CGG | - | chr8.3:70846440-70846459 | MS.gene07882:intron | 50.0% | |
| ! | CGATGTGTAAGTGTCGTGTC+CGG | - | chr8.3:70846422-70846441 | MS.gene07882:intron | 50.0% |
| !! | TTAGGGTGCTGTGAGGGTTA+TGG | - | chr8.3:70846066-70846085 | MS.gene07882:CDS | 50.0% |
| CCACCATCATCATTGCCCGT+TGG | + | chr8.3:70847366-70847385 | None:intergenic | 55.0% | |
| GCAACCCTGTTCTTTGCTGC+TGG | + | chr8.3:70847333-70847352 | None:intergenic | 55.0% | |
| GCAATGGGGGACGCTATGAA+AGG | - | chr8.3:70846650-70846669 | MS.gene07882:intron | 55.0% | |
| TGCCCAATGCCCACACATGT+CGG | + | chr8.3:70846349-70846368 | None:intergenic | 55.0% | |
| TGCGCCAGCAGCAAAGAACA+GGG | - | chr8.3:70847326-70847345 | MS.gene07882:intron | 55.0% | |
| TGCTGTGAGGGTTATGGCCA+AGG | - | chr8.3:70846072-70846091 | MS.gene07882:CDS | 55.0% | |
| !! | ATGAGGCACCGACAGAGACA+TGG | + | chr8.3:70846451-70846470 | None:intergenic | 55.0% |
| !! | CCAACGGGCAATGATGATGG+TGG | - | chr8.3:70847363-70847382 | MS.gene07882:CDS | 55.0% |
| CTGCGCCAGCAGCAAAGAAC+AGG | - | chr8.3:70847325-70847344 | MS.gene07882:intron | 60.0% | |
| GGTTGCTCAGGCCGAACCAA+CGG | - | chr8.3:70847347-70847366 | MS.gene07882:CDS | 60.0% | |
| GTTCTTTGCTGCTGGCGCAG+CGG | + | chr8.3:70847325-70847344 | None:intergenic | 60.0% | |
| GTTGCTCAGGCCGAACCAAC+GGG | - | chr8.3:70847348-70847367 | MS.gene07882:CDS | 60.0% | |
| !! | GCAGCGGTTGAGGTTGATGC+AGG | + | chr8.3:70847309-70847328 | None:intergenic | 60.0% |
| TGCTGCTGGCGCAGCGGTTG+AGG | + | chr8.3:70847319-70847338 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 70845299 | 70847434 | 70845299 | ID=MS.gene07882 |
| chr8.3 | mRNA | 70845299 | 70847434 | 70845299 | ID=MS.gene07882.t1;Parent=MS.gene07882 |
| chr8.3 | exon | 70847327 | 70847434 | 70847327 | ID=MS.gene07882.t1.exon1;Parent=MS.gene07882.t1 |
| chr8.3 | CDS | 70847327 | 70847434 | 70847327 | ID=cds.MS.gene07882.t1;Parent=MS.gene07882.t1 |
| chr8.3 | exon | 70846559 | 70846663 | 70846559 | ID=MS.gene07882.t1.exon2;Parent=MS.gene07882.t1 |
| chr8.3 | CDS | 70846559 | 70846663 | 70846559 | ID=cds.MS.gene07882.t1;Parent=MS.gene07882.t1 |
| chr8.3 | exon | 70845841 | 70846101 | 70845841 | ID=MS.gene07882.t1.exon3;Parent=MS.gene07882.t1 |
| chr8.3 | CDS | 70845841 | 70846101 | 70845841 | ID=cds.MS.gene07882.t1;Parent=MS.gene07882.t1 |
| chr8.3 | exon | 70845299 | 70845439 | 70845299 | ID=MS.gene07882.t1.exon4;Parent=MS.gene07882.t1 |
| chr8.3 | CDS | 70845299 | 70845439 | 70845299 | ID=cds.MS.gene07882.t1;Parent=MS.gene07882.t1 |
| Gene Sequence |
| Protein sequence |
