Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09617.t1 | XP_003611545.1 | 92.8 | 415 | 27 | 2 | 1 | 414 | 1 | 413 | 9.50E-211 | 742.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09617.t1 | Q9SY57 | 46.0 | 411 | 199 | 5 | 3 | 405 | 4 | 399 | 5.3e-93 | 342.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09617.t1 | G7K2F2 | 92.8 | 415 | 27 | 2 | 1 | 414 | 1 | 413 | 6.9e-211 | 742.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene09617 | 0.840733 | 7.28E-58 | -1.69E-46 |
| MS.gene049151 | MS.gene09617 | 0.808076 | 3.70E-50 | -1.69E-46 |
| MS.gene049153 | MS.gene09617 | 0.838395 | 2.95E-57 | -1.69E-46 |
| MS.gene049356 | MS.gene09617 | 0.828559 | 8.41E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene09617 | 0.81667 | 4.91E-52 | -1.69E-46 |
| MS.gene049426 | MS.gene09617 | 0.804967 | 1.67E-49 | -1.69E-46 |
| MS.gene049910 | MS.gene09617 | 0.840254 | 9.71E-58 | -1.69E-46 |
| MS.gene050128 | MS.gene09617 | 0.81067 | 1.03E-50 | -1.69E-46 |
| MS.gene050226 | MS.gene09617 | 0.816341 | 5.81E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene09617 | 0.803292 | 3.74E-49 | -1.69E-46 |
| MS.gene050228 | MS.gene09617 | 0.802234 | 6.18E-49 | -1.69E-46 |
| MS.gene050301 | MS.gene09617 | 0.829023 | 6.49E-55 | -1.69E-46 |
| MS.gene050670 | MS.gene09617 | 0.834999 | 2.17E-56 | -1.69E-46 |
| MS.gene050971 | MS.gene09617 | 0.813963 | 1.96E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene09617 | 0.811666 | 6.25E-51 | -1.69E-46 |
| MS.gene051860 | MS.gene09617 | 0.830387 | 3.02E-55 | -1.69E-46 |
| MS.gene051983 | MS.gene09617 | 0.832276 | 1.04E-55 | -1.69E-46 |
| MS.gene052011 | MS.gene09617 | -0.819386 | 1.19E-52 | -1.69E-46 |
| MS.gene052077 | MS.gene09617 | 0.847357 | 1.22E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene09617 | 0.861547 | 9.50E-64 | -1.69E-46 |
| MS.gene052253 | MS.gene09617 | 0.845392 | 4.18E-59 | -1.69E-46 |
| MS.gene052255 | MS.gene09617 | 0.803217 | 3.87E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene09617 | 0.844271 | 8.38E-59 | -1.69E-46 |
| MS.gene052485 | MS.gene09617 | 0.804858 | 1.77E-49 | -1.69E-46 |
| MS.gene05316 | MS.gene09617 | 0.849175 | 3.83E-60 | -1.69E-46 |
| MS.gene053494 | MS.gene09617 | 0.809744 | 1.63E-50 | -1.69E-46 |
| MS.gene053577 | MS.gene09617 | 0.806193 | 9.27E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene09617 | 0.838684 | 2.48E-57 | -1.69E-46 |
| MS.gene054011 | MS.gene09617 | 0.81317 | 2.93E-51 | -1.69E-46 |
| MS.gene054012 | MS.gene09617 | 0.802607 | 5.18E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene09617 | 0.818845 | 1.58E-52 | -1.69E-46 |
| MS.gene054183 | MS.gene09617 | 0.878941 | 1.87E-69 | -1.69E-46 |
| MS.gene054349 | MS.gene09617 | 0.831246 | 1.86E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene09617 | 0.814871 | 1.24E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene09617 | 0.85813 | 1.02E-62 | -1.69E-46 |
| MS.gene054983 | MS.gene09617 | 0.809957 | 1.46E-50 | -1.69E-46 |
| MS.gene055116 | MS.gene09617 | 0.817526 | 3.15E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene09617 | 0.804855 | 1.77E-49 | -1.69E-46 |
| MS.gene05553 | MS.gene09617 | 0.845354 | 4.28E-59 | -1.69E-46 |
| MS.gene055604 | MS.gene09617 | 0.820769 | 5.76E-53 | -1.69E-46 |
| MS.gene055666 | MS.gene09617 | 0.808286 | 3.34E-50 | -1.69E-46 |
| MS.gene055701 | MS.gene09617 | 0.818897 | 1.54E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene09617 | 0.800021 | 1.75E-48 | -1.69E-46 |
| MS.gene056659 | MS.gene09617 | 0.823 | 1.75E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene09617 | 0.843472 | 1.37E-58 | -1.69E-46 |
| MS.gene056899 | MS.gene09617 | -0.80755 | 4.78E-50 | -1.69E-46 |
| MS.gene056979 | MS.gene09617 | 0.833364 | 5.56E-56 | -1.69E-46 |
| MS.gene05702 | MS.gene09617 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene057396 | MS.gene09617 | 0.835705 | 1.44E-56 | -1.69E-46 |
| MS.gene057448 | MS.gene09617 | 0.837084 | 6.40E-57 | -1.69E-46 |
| MS.gene057449 | MS.gene09617 | 0.820009 | 8.60E-53 | -1.69E-46 |
| MS.gene057450 | MS.gene09617 | 0.831346 | 1.76E-55 | -1.69E-46 |
| MS.gene057469 | MS.gene09617 | 0.83842 | 2.91E-57 | -1.69E-46 |
| MS.gene057476 | MS.gene09617 | 0.818238 | 2.18E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene09617 | 0.825388 | 4.82E-54 | -1.69E-46 |
| MS.gene057750 | MS.gene09617 | 0.829594 | 4.72E-55 | -1.69E-46 |
| MS.gene057823 | MS.gene09617 | 0.822732 | 2.02E-53 | -1.69E-46 |
| MS.gene058002 | MS.gene09617 | 0.810433 | 1.16E-50 | -1.69E-46 |
| MS.gene058142 | MS.gene09617 | 0.821396 | 4.13E-53 | -1.69E-46 |
| MS.gene058700 | MS.gene09617 | 0.809438 | 1.89E-50 | -1.69E-46 |
| MS.gene058710 | MS.gene09617 | 0.812832 | 3.48E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene09617 | 0.832837 | 7.52E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene09617 | 0.834138 | 3.56E-56 | -1.69E-46 |
| MS.gene058949 | MS.gene09617 | 0.845308 | 4.40E-59 | -1.69E-46 |
| MS.gene05907 | MS.gene09617 | 0.836382 | 9.67E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene09617 | 0.831447 | 1.66E-55 | -1.69E-46 |
| MS.gene059366 | MS.gene09617 | 0.806584 | 7.66E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene09617 | 0.862385 | 5.26E-64 | -1.69E-46 |
| MS.gene059462 | MS.gene09617 | 0.813268 | 2.79E-51 | -1.69E-46 |
| MS.gene059597 | MS.gene09617 | 0.826456 | 2.69E-54 | -1.69E-46 |
| MS.gene059609 | MS.gene09617 | 0.813284 | 2.77E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene09617 | 0.814903 | 1.22E-51 | -1.69E-46 |
| MS.gene059692 | MS.gene09617 | 0.80698 | 6.32E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene09617 | 0.806406 | 8.35E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene09617 | 0.82316 | 1.61E-53 | -1.69E-46 |
| MS.gene05984 | MS.gene09617 | 0.826945 | 2.05E-54 | -1.69E-46 |
| MS.gene059876 | MS.gene09617 | 0.816145 | 6.43E-52 | -1.69E-46 |
| MS.gene059958 | MS.gene09617 | 0.800116 | 1.68E-48 | -1.69E-46 |
| MS.gene060247 | MS.gene09617 | 0.818347 | 2.06E-52 | -1.69E-46 |
| MS.gene060495 | MS.gene09617 | 0.837962 | 3.81E-57 | -1.69E-46 |
| MS.gene061049 | MS.gene09617 | 0.852064 | 5.90E-61 | -1.69E-46 |
| MS.gene061051 | MS.gene09617 | -0.801225 | 9.96E-49 | -1.69E-46 |
| MS.gene061114 | MS.gene09617 | -0.802503 | 5.44E-49 | -1.69E-46 |
| MS.gene061159 | MS.gene09617 | 0.837407 | 5.29E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09617.t1 | MTR_5g015150 | 92.771 | 415 | 27 | 2 | 1 | 414 | 1 | 413 | 0.0 | 756 |
| MS.gene09617.t1 | MTR_3g103320 | 44.262 | 427 | 195 | 8 | 1 | 414 | 1 | 397 | 2.82e-118 | 350 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09617.t1 | AT1G10150 | 46.377 | 414 | 193 | 6 | 3 | 405 | 4 | 399 | 1.56e-122 | 362 |
| MS.gene09617.t1 | AT1G59510 | 43.216 | 398 | 176 | 9 | 14 | 406 | 15 | 367 | 6.22e-108 | 323 |
| MS.gene09617.t1 | AT3G49790 | 41.832 | 404 | 184 | 5 | 10 | 413 | 12 | 364 | 7.19e-99 | 300 |
Find 75 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGTTCTGATTTGGATTC+TGG | 0.226641 | 5.2:-7121189 | MS.gene09617:CDS |
| TAACCCTAGTCTCATGTTTC+GGG | 0.244852 | 5.2:+7121013 | None:intergenic |
| GCAATTTGATTCAAACTATT+AGG | 0.252909 | 5.2:+7121492 | None:intergenic |
| CTAACCCTAGTCTCATGTTT+CGG | 0.262134 | 5.2:+7121012 | None:intergenic |
| GATAGTTCAGGTTCAGGTTC+AGG | 0.314416 | 5.2:-7120904 | MS.gene09617:CDS |
| TGAGACAGTTAGATCTTTCA+TGG | 0.315546 | 5.2:-7120707 | MS.gene09617:CDS |
| ATTGTTTACACCGGCTGGTT+CGG | 0.330132 | 5.2:-7121322 | MS.gene09617:CDS |
| TTGTTTACACCGGCTGGTTC+GGG | 0.342746 | 5.2:-7121321 | MS.gene09617:CDS |
| CCCGATTGAAACTAAGATTA+AGG | 0.352373 | 5.2:+7121698 | None:intergenic |
| AGAATCGGGTTGTTCTGATT+TGG | 0.353612 | 5.2:-7121196 | MS.gene09617:CDS |
| TTTGCTAGGAATATTGTTCT+TGG | 0.353935 | 5.2:-7121273 | MS.gene09617:CDS |
| ACCTTAATCTTAGTTTCAAT+CGG | 0.367438 | 5.2:-7121699 | MS.gene09617:CDS |
| CCGAATGATAGTTCAGGTTC+AGG | 0.374091 | 5.2:-7120910 | MS.gene09617:CDS |
| TGGATTCTGGTGTGCCGAAA+TGG | 0.379309 | 5.2:-7121176 | MS.gene09617:CDS |
| CAAACAACATCAACCCATTT+CGG | 0.385507 | 5.2:+7121162 | None:intergenic |
| TTGCTAGGAATATTGTTCTT+GGG | 0.385636 | 5.2:-7121272 | MS.gene09617:CDS |
| CATTGGCTATTCCTAGTAAT+AGG | 0.391171 | 5.2:-7120765 | MS.gene09617:CDS |
| TGCACATAATGGATTGCAAT+TGG | 0.408920 | 5.2:-7120552 | MS.gene09617:CDS |
| GGATTTGCTTCTGTTGTTGT+TGG | 0.421636 | 5.2:-7121300 | MS.gene09617:CDS |
| AATGGATTGCAATTGGGCTT+TGG | 0.425168 | 5.2:-7120545 | MS.gene09617:CDS |
| AAGAGATGTTTGTGATAAAG+AGG | 0.428216 | 5.2:-7120821 | MS.gene09617:CDS |
| TTTCTCTTTCGAGCTATGAA+TGG | 0.431945 | 5.2:+7121639 | None:intergenic |
| CTTGTCAGCAACATTTGAAT+CGG | 0.434555 | 5.2:+7121356 | None:intergenic |
| ATAAGTGTGGGGAGCTGATT+GGG | 0.438595 | 5.2:-7121134 | MS.gene09617:CDS |
| TCTAACCCGAATGATAGTTC+AGG | 0.439216 | 5.2:-7120916 | MS.gene09617:CDS |
| GTTTGTGATAAAGAGGATAA+AGG | 0.441922 | 5.2:-7120814 | MS.gene09617:CDS |
| CCTGAACCTGAACTATCATT+CGG | 0.449100 | 5.2:+7120910 | None:intergenic |
| GGATTCGAGAAGTGGAGAAT+CGG | 0.454786 | 5.2:-7121211 | MS.gene09617:CDS |
| ATGTCCGTAAAAGAAAGAAA+TGG | 0.457589 | 5.2:-7121722 | MS.gene09617:CDS |
| GCACATAATGGATTGCAATT+GGG | 0.461406 | 5.2:-7120551 | MS.gene09617:CDS |
| CTGAACCTGAACTATCATTC+GGG | 0.461737 | 5.2:+7120911 | None:intergenic |
| CGCGTTGTGCCTGCACATAA+TGG | 0.463386 | 5.2:-7120563 | MS.gene09617:CDS |
| CCTTAATCTTAGTTTCAATC+GGG | 0.466170 | 5.2:-7121698 | MS.gene09617:CDS |
| AGACTTGTTCTTGATGTGAC+TGG | 0.473332 | 5.2:-7120742 | MS.gene09617:CDS |
| GACTAGGGTTAGAGAAATGT+TGG | 0.481635 | 5.2:-7121001 | MS.gene09617:CDS |
| GATAAATTGTTTACACCGGC+TGG | 0.484801 | 5.2:-7121327 | MS.gene09617:CDS |
| GGATTCTGGTGTGCCGAAAT+GGG | 0.490037 | 5.2:-7121175 | MS.gene09617:CDS |
| GATAAGTGTGGGGAGCTGAT+TGG | 0.493181 | 5.2:-7121135 | MS.gene09617:CDS |
| AGAACAAGTCTCCTATTACT+AGG | 0.493344 | 5.2:+7120754 | None:intergenic |
| CGATTCAAATGTTGCTGACA+AGG | 0.496180 | 5.2:-7121355 | MS.gene09617:CDS |
| TAAAGAGGATAAAGGTGGTT+GGG | 0.499685 | 5.2:-7120806 | MS.gene09617:CDS |
| GATTCGAGAAGTGGAGAATC+GGG | 0.500290 | 5.2:-7121210 | MS.gene09617:CDS |
| CTAACCCGAAACATGAGACT+AGG | 0.506984 | 5.2:-7121017 | MS.gene09617:CDS |
| CTAGTAACCACCACTTAAGC+AGG | 0.514335 | 5.2:+7120520 | None:intergenic |
| GTGACTGTTGGAATTGTGAA+TGG | 0.524223 | 5.2:-7121414 | MS.gene09617:CDS |
| ATGTTGGTTGATGTTTGTAA+TGG | 0.527695 | 5.2:-7120985 | MS.gene09617:CDS |
| TCAATTGTTTGTTAGTACAT+TGG | 0.532506 | 5.2:-7121103 | MS.gene09617:CDS |
| TTGTTTGTAGTGATAAGTGT+GGG | 0.535485 | 5.2:-7121146 | MS.gene09617:CDS |
| TGGTTATCAATCCATGAGCC+AGG | 0.539703 | 5.2:-7121394 | MS.gene09617:CDS |
| GACTTGTTCTTGATGTGACT+GGG | 0.540843 | 5.2:-7120741 | MS.gene09617:CDS |
| GGAGGGTTGGATTCGAGAAG+TGG | 0.544923 | 5.2:-7121219 | MS.gene09617:CDS |
| TCACAATGTTCACGAGGAAG+TGG | 0.550752 | 5.2:-7120641 | MS.gene09617:CDS |
| AATTGCAATCCATTATGTGC+AGG | 0.556385 | 5.2:+7120554 | None:intergenic |
| ATAAAGAGGATAAAGGTGGT+TGG | 0.557867 | 5.2:-7120807 | MS.gene09617:CDS |
| TGGTAAATGCAGTGGAGGGT+TGG | 0.560656 | 5.2:-7121232 | MS.gene09617:CDS |
| GTTTGATAAATTGTTTACAC+CGG | 0.572672 | 5.2:-7121331 | MS.gene09617:CDS |
| CAGCAAGGTTTCATCCACAT+TGG | 0.581109 | 5.2:-7120782 | MS.gene09617:CDS |
| GTTGTTTGTAGTGATAAGTG+TGG | 0.581476 | 5.2:-7121147 | MS.gene09617:CDS |
| GTGACACGTGCTGTGACTGT+TGG | 0.593196 | 5.2:-7121426 | MS.gene09617:CDS |
| GAAGCAAATCCCGAACCAGC+CGG | 0.594026 | 5.2:+7121312 | None:intergenic |
| TAAAGGTGGTTGGGTCAGCA+AGG | 0.596356 | 5.2:-7120797 | MS.gene09617:CDS |
| AATTGCGAAATTATCGCGCT+CGG | 0.597238 | 5.2:-7121475 | MS.gene09617:CDS |
| TAACCCGAAACATGAGACTA+GGG | 0.605610 | 5.2:-7121016 | MS.gene09617:CDS |
| TCAGAATCTGCAGATACCAT+CGG | 0.615540 | 5.2:-7121567 | MS.gene09617:CDS |
| TTGTTCTTGATGTGACTGGG+AGG | 0.633345 | 5.2:-7120738 | MS.gene09617:CDS |
| TGTTCTTGATGTGACTGGGA+GGG | 0.644691 | 5.2:-7120737 | MS.gene09617:CDS |
| TCTTGTTAAAACGTCTCATG+AGG | 0.649097 | 5.2:-7120950 | MS.gene09617:CDS |
| GCTGGTGGTAAATGCAGTGG+AGG | 0.658148 | 5.2:-7121237 | MS.gene09617:CDS |
| ATTACTAGGAATAGCCAATG+TGG | 0.658823 | 5.2:+7120768 | None:intergenic |
| GATGCTGGTGGTAAATGCAG+TGG | 0.670323 | 5.2:-7121240 | MS.gene09617:CDS |
| TGTGATAAAGAGGATAAAGG+TGG | 0.671559 | 5.2:-7120811 | MS.gene09617:CDS |
| ATGTGCTCACAATGTTCACG+AGG | 0.700633 | 5.2:-7120647 | MS.gene09617:CDS |
| CTGGTGGTAAATGCAGTGGA+GGG | 0.702499 | 5.2:-7121236 | MS.gene09617:CDS |
| TGAATGGTGCGTGATAAGCA+CGG | 0.702699 | 5.2:+7121655 | None:intergenic |
| TGTTTGTAGTGATAAGTGTG+GGG | 0.727200 | 5.2:-7121145 | MS.gene09617:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | ACCTTAATCTTAGTTTCAAT+CGG | - | chr5.2:7120591-7120610 | MS.gene09617:CDS | 25.0% |
| ! | GCAATTTGATTCAAACTATT+AGG | + | chr5.2:7120801-7120820 | None:intergenic | 25.0% |
| ! | GTTTGATAAATTGTTTACAC+CGG | - | chr5.2:7120959-7120978 | MS.gene09617:CDS | 25.0% |
| !! | ACTTATGATGAATTCTTTTC+TGG | - | chr5.2:7121245-7121264 | MS.gene09617:CDS | 25.0% |
| !! | TCAATTGTTTGTTAGTACAT+TGG | - | chr5.2:7121187-7121206 | MS.gene09617:CDS | 25.0% |
| !!! | TTTATTTTGCAAACTTTGTG+TGG | - | chr5.2:7121608-7121627 | MS.gene09617:CDS | 25.0% |
| AAGAGATGTTTGTGATAAAG+AGG | - | chr5.2:7121469-7121488 | MS.gene09617:CDS | 30.0% | |
| ATGTCCGTAAAAGAAAGAAA+TGG | - | chr5.2:7120568-7120587 | MS.gene09617:CDS | 30.0% | |
| CCTTAATCTTAGTTTCAATC+GGG | - | chr5.2:7120592-7120611 | MS.gene09617:CDS | 30.0% | |
| GTTTGTGATAAAGAGGATAA+AGG | - | chr5.2:7121476-7121495 | MS.gene09617:CDS | 30.0% | |
| TTGCTAGGAATATTGTTCTT+GGG | - | chr5.2:7121018-7121037 | MS.gene09617:CDS | 30.0% | |
| TTGTTTGTAGTGATAAGTGT+GGG | - | chr5.2:7121144-7121163 | MS.gene09617:CDS | 30.0% | |
| TTTGCTAGGAATATTGTTCT+TGG | - | chr5.2:7121017-7121036 | MS.gene09617:CDS | 30.0% | |
| ! | AGGTCCATTTCTTTCTTTTA+CGG | + | chr5.2:7120575-7120594 | None:intergenic | 30.0% |
| ! | ATGTTGGTTGATGTTTGTAA+TGG | - | chr5.2:7121305-7121324 | MS.gene09617:CDS | 30.0% |
| AATTGCAATCCATTATGTGC+AGG | + | chr5.2:7121739-7121758 | None:intergenic | 35.0% | |
| AGAACAAGTCTCCTATTACT+AGG | + | chr5.2:7121539-7121558 | None:intergenic | 35.0% | |
| ATAAAGAGGATAAAGGTGGT+TGG | - | chr5.2:7121483-7121502 | MS.gene09617:CDS | 35.0% | |
| ATTACTAGGAATAGCCAATG+TGG | + | chr5.2:7121525-7121544 | None:intergenic | 35.0% | |
| CAAACAACATCAACCCATTT+CGG | + | chr5.2:7121131-7121150 | None:intergenic | 35.0% | |
| CCCGATTGAAACTAAGATTA+AGG | + | chr5.2:7120595-7120614 | None:intergenic | 35.0% | |
| CTTGTCAGCAACATTTGAAT+CGG | + | chr5.2:7120937-7120956 | None:intergenic | 35.0% | |
| GTTGTTTGTAGTGATAAGTG+TGG | - | chr5.2:7121143-7121162 | MS.gene09617:CDS | 35.0% | |
| TAAAGAGGATAAAGGTGGTT+GGG | - | chr5.2:7121484-7121503 | MS.gene09617:CDS | 35.0% | |
| TCTTGTTAAAACGTCTCATG+AGG | - | chr5.2:7121340-7121359 | MS.gene09617:CDS | 35.0% | |
| TGAGACAGTTAGATCTTTCA+TGG | - | chr5.2:7121583-7121602 | MS.gene09617:CDS | 35.0% | |
| TGTGATAAAGAGGATAAAGG+TGG | - | chr5.2:7121479-7121498 | MS.gene09617:CDS | 35.0% | |
| TGTTTGTAGTGATAAGTGTG+GGG | - | chr5.2:7121145-7121164 | MS.gene09617:CDS | 35.0% | |
| TTTCTCTTTCGAGCTATGAA+TGG | + | chr5.2:7120654-7120673 | None:intergenic | 35.0% | |
| ! | ATCTTTTGTGACAATACCGA+TGG | + | chr5.2:7120742-7120761 | None:intergenic | 35.0% |
| ! | CATTGGCTATTCCTAGTAAT+AGG | - | chr5.2:7121525-7121544 | MS.gene09617:CDS | 35.0% |
| !! | GCACATAATGGATTGCAATT+GGG | - | chr5.2:7121739-7121758 | MS.gene09617:CDS | 35.0% |
| !! | TGCACATAATGGATTGCAAT+TGG | - | chr5.2:7121738-7121757 | MS.gene09617:CDS | 35.0% |
| !! | TTGTTGTTGGAAGTTTTGCT+AGG | - | chr5.2:7121003-7121022 | MS.gene09617:CDS | 35.0% |
| !!! | TCAGGTTCTTATTTTGATGC+TGG | - | chr5.2:7121404-7121423 | MS.gene09617:CDS | 35.0% |
| AATTGCGAAATTATCGCGCT+CGG | - | chr5.2:7120815-7120834 | MS.gene09617:CDS | 40.0% | |
| CCTGAACCTGAACTATCATT+CGG | + | chr5.2:7121383-7121402 | None:intergenic | 40.0% | |
| CGATTCAAATGTTGCTGACA+AGG | - | chr5.2:7120935-7120954 | MS.gene09617:CDS | 40.0% | |
| CTAACCCTAGTCTCATGTTT+CGG | + | chr5.2:7121281-7121300 | None:intergenic | 40.0% | |
| CTGAACCTGAACTATCATTC+GGG | + | chr5.2:7121382-7121401 | None:intergenic | 40.0% | |
| GACTAGGGTTAGAGAAATGT+TGG | - | chr5.2:7121289-7121308 | MS.gene09617:CDS | 40.0% | |
| GATAAATTGTTTACACCGGC+TGG | - | chr5.2:7120963-7120982 | MS.gene09617:CDS | 40.0% | |
| GTGACTGTTGGAATTGTGAA+TGG | - | chr5.2:7120876-7120895 | MS.gene09617:CDS | 40.0% | |
| TAACCCGAAACATGAGACTA+GGG | - | chr5.2:7121274-7121293 | MS.gene09617:CDS | 40.0% | |
| TAACCCTAGTCTCATGTTTC+GGG | + | chr5.2:7121280-7121299 | None:intergenic | 40.0% | |
| TCAGAATCTGCAGATACCAT+CGG | - | chr5.2:7120723-7120742 | MS.gene09617:CDS | 40.0% | |
| TCTAACCCGAATGATAGTTC+AGG | - | chr5.2:7121374-7121393 | MS.gene09617:CDS | 40.0% | |
| ! | AGAATCGGGTTGTTCTGATT+TGG | - | chr5.2:7121094-7121113 | MS.gene09617:CDS | 40.0% |
| ! | AGACTTGTTCTTGATGTGAC+TGG | - | chr5.2:7121548-7121567 | MS.gene09617:CDS | 40.0% |
| ! | GACTTGTTCTTGATGTGACT+GGG | - | chr5.2:7121549-7121568 | MS.gene09617:CDS | 40.0% |
| ! | GGAACAGTTTTCGGATTCTT+TGG | - | chr5.2:7120836-7120855 | MS.gene09617:CDS | 40.0% |
| ! | GGATTTGCTTCTGTTGTTGT+TGG | - | chr5.2:7120990-7121009 | MS.gene09617:CDS | 40.0% |
| !! | AATGGATTGCAATTGGGCTT+TGG | - | chr5.2:7121745-7121764 | MS.gene09617:CDS | 40.0% |
| !! | GGTTGTTCTGATTTGGATTC+TGG | - | chr5.2:7121101-7121120 | MS.gene09617:CDS | 40.0% |
| !!! | CTTGGGTTTTATTCAGATGC+TGG | - | chr5.2:7121035-7121054 | MS.gene09617:CDS | 40.0% |
| ATAAGTGTGGGGAGCTGATT+GGG | - | chr5.2:7121156-7121175 | MS.gene09617:CDS | 45.0% | |
| ATGTGCTCACAATGTTCACG+AGG | - | chr5.2:7121643-7121662 | MS.gene09617:CDS | 45.0% | |
| CAGCAAGGTTTCATCCACAT+TGG | - | chr5.2:7121508-7121527 | MS.gene09617:CDS | 45.0% | |
| CTAACCCGAAACATGAGACT+AGG | - | chr5.2:7121273-7121292 | MS.gene09617:CDS | 45.0% | |
| GATTCGAGAAGTGGAGAATC+GGG | - | chr5.2:7121080-7121099 | MS.gene09617:CDS | 45.0% | |
| GGATTCGAGAAGTGGAGAAT+CGG | - | chr5.2:7121079-7121098 | MS.gene09617:CDS | 45.0% | |
| TCACAATGTTCACGAGGAAG+TGG | - | chr5.2:7121649-7121668 | MS.gene09617:CDS | 45.0% | |
| TGAATGGTGCGTGATAAGCA+CGG | + | chr5.2:7120638-7120657 | None:intergenic | 45.0% | |
| TGGTTATCAATCCATGAGCC+AGG | - | chr5.2:7120896-7120915 | MS.gene09617:CDS | 45.0% | |
| TGTTCTTGATGTGACTGGGA+GGG | - | chr5.2:7121553-7121572 | MS.gene09617:CDS | 45.0% | |
| TTGTTCTTGATGTGACTGGG+AGG | - | chr5.2:7121552-7121571 | MS.gene09617:CDS | 45.0% | |
| ! | ATTGTTTACACCGGCTGGTT+CGG | - | chr5.2:7120968-7120987 | MS.gene09617:CDS | 45.0% |
| ! | ATTTTCATCAGCCTGGCTCA+TGG | + | chr5.2:7120910-7120929 | None:intergenic | 45.0% |
| ! | CCGAATGATAGTTCAGGTTC+AGG | - | chr5.2:7121380-7121399 | MS.gene09617:CDS | 45.0% |
| ! | GATAGTTCAGGTTCAGGTTC+AGG | - | chr5.2:7121386-7121405 | MS.gene09617:CDS | 45.0% |
| !! | CGGATTGATTTTCATCAGCC+TGG | + | chr5.2:7120917-7120936 | None:intergenic | 45.0% |
| !!! | GGGTTTTATTCAGATGCTGG+TGG | - | chr5.2:7121038-7121057 | MS.gene09617:CDS | 45.0% |
| CTGGTGGTAAATGCAGTGGA+GGG | - | chr5.2:7121054-7121073 | MS.gene09617:CDS | 50.0% | |
| GATAAGTGTGGGGAGCTGAT+TGG | - | chr5.2:7121155-7121174 | MS.gene09617:CDS | 50.0% | |
| GATGCTGGTGGTAAATGCAG+TGG | - | chr5.2:7121050-7121069 | MS.gene09617:CDS | 50.0% | |
| GGATTCTGGTGTGCCGAAAT+GGG | - | chr5.2:7121115-7121134 | MS.gene09617:CDS | 50.0% | |
| TAAAGGTGGTTGGGTCAGCA+AGG | - | chr5.2:7121493-7121512 | MS.gene09617:CDS | 50.0% | |
| TGGATTCTGGTGTGCCGAAA+TGG | - | chr5.2:7121114-7121133 | MS.gene09617:CDS | 50.0% | |
| TGGTAAATGCAGTGGAGGGT+TGG | - | chr5.2:7121058-7121077 | MS.gene09617:CDS | 50.0% | |
| ! | ATCGCGCTCGGAACAGTTTT+CGG | - | chr5.2:7120827-7120846 | MS.gene09617:CDS | 50.0% |
| ! | TTGTTTACACCGGCTGGTTC+GGG | - | chr5.2:7120969-7120988 | MS.gene09617:CDS | 50.0% |
| CGCGTTGTGCCTGCACATAA+TGG | - | chr5.2:7121727-7121746 | MS.gene09617:CDS | 55.0% | |
| GAAGCAAATCCCGAACCAGC+CGG | + | chr5.2:7120981-7121000 | None:intergenic | 55.0% | |
| GCTGGTGGTAAATGCAGTGG+AGG | - | chr5.2:7121053-7121072 | MS.gene09617:CDS | 55.0% | |
| GGAGGGTTGGATTCGAGAAG+TGG | - | chr5.2:7121071-7121090 | MS.gene09617:CDS | 55.0% | |
| GTGACACGTGCTGTGACTGT+TGG | - | chr5.2:7120864-7120883 | MS.gene09617:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 7120534 | 7121778 | 7120534 | ID=MS.gene09617 |
| chr5.2 | mRNA | 7120534 | 7121778 | 7120534 | ID=MS.gene09617.t1;Parent=MS.gene09617 |
| chr5.2 | exon | 7120534 | 7121778 | 7120534 | ID=MS.gene09617.t1.exon1;Parent=MS.gene09617.t1 |
| chr5.2 | CDS | 7120534 | 7121778 | 7120534 | ID=cds.MS.gene09617.t1;Parent=MS.gene09617.t1 |
| Gene Sequence |
| Protein sequence |
