Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23532.t1 | XP_013449832.1 | 91.7 | 230 | 3 | 2 | 1 | 214 | 82 | 311 | 1.40E-104 | 389 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23532.t1 | Q9FLG2 | 67.2 | 235 | 56 | 6 | 1 | 214 | 83 | 317 | 8.2e-69 | 261.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23532.t1 | A0A072UDJ3 | 91.7 | 230 | 3 | 2 | 1 | 214 | 82 | 311 | 1.0e-104 | 389.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049150 | MS.gene23532 | 0.827689 | 1.36E-54 | -1.69E-46 |
| MS.gene049151 | MS.gene23532 | 0.802295 | 6.00E-49 | -1.69E-46 |
| MS.gene049153 | MS.gene23532 | 0.821434 | 4.05E-53 | -1.69E-46 |
| MS.gene049297 | MS.gene23532 | 0.823937 | 1.06E-53 | -1.69E-46 |
| MS.gene04933 | MS.gene23532 | 0.829841 | 4.11E-55 | -1.69E-46 |
| MS.gene049378 | MS.gene23532 | 0.803365 | 3.61E-49 | -1.69E-46 |
| MS.gene049426 | MS.gene23532 | 0.83685 | 7.35E-57 | -1.69E-46 |
| MS.gene049758 | MS.gene23532 | 0.819409 | 1.18E-52 | -1.69E-46 |
| MS.gene049910 | MS.gene23532 | 0.835798 | 1.36E-56 | -1.69E-46 |
| MS.gene050168 | MS.gene23532 | 0.828302 | 9.69E-55 | -1.69E-46 |
| MS.gene050226 | MS.gene23532 | 0.848269 | 6.83E-60 | -1.69E-46 |
| MS.gene050227 | MS.gene23532 | 0.851758 | 7.20E-61 | -1.69E-46 |
| MS.gene050228 | MS.gene23532 | 0.847223 | 1.32E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene23532 | 0.828288 | 9.77E-55 | -1.69E-46 |
| MS.gene050330 | MS.gene23532 | -0.813921 | 2.00E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene23532 | 0.805433 | 1.34E-49 | -1.69E-46 |
| MS.gene050558 | MS.gene23532 | 0.869751 | 2.45E-66 | -1.69E-46 |
| MS.gene050560 | MS.gene23532 | 0.832222 | 1.07E-55 | -1.69E-46 |
| MS.gene050642 | MS.gene23532 | 0.822085 | 2.86E-53 | -1.69E-46 |
| MS.gene050787 | MS.gene23532 | 0.865878 | 4.29E-65 | -1.69E-46 |
| MS.gene050820 | MS.gene23532 | 0.854325 | 1.33E-61 | -1.69E-46 |
| MS.gene05119 | MS.gene23532 | -0.80037 | 1.49E-48 | -1.69E-46 |
| MS.gene051568 | MS.gene23532 | 0.80452 | 2.08E-49 | -1.69E-46 |
| MS.gene051582 | MS.gene23532 | 0.807805 | 4.22E-50 | -1.69E-46 |
| MS.gene051663 | MS.gene23532 | 0.805823 | 1.11E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene23532 | 0.864619 | 1.07E-64 | -1.69E-46 |
| MS.gene051983 | MS.gene23532 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene052011 | MS.gene23532 | -0.838133 | 3.45E-57 | -1.69E-46 |
| MS.gene052176 | MS.gene23532 | 0.82321 | 1.57E-53 | -1.69E-46 |
| MS.gene052207 | MS.gene23532 | 0.817568 | 3.08E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene23532 | 0.835644 | 1.49E-56 | -1.69E-46 |
| MS.gene052389 | MS.gene23532 | 0.802173 | 6.36E-49 | -1.69E-46 |
| MS.gene053836 | MS.gene23532 | 0.877128 | 8.06E-69 | -1.69E-46 |
| MS.gene054011 | MS.gene23532 | 0.808728 | 2.69E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene23532 | 0.845019 | 5.27E-59 | -1.69E-46 |
| MS.gene054468 | MS.gene23532 | 0.8306 | 2.68E-55 | -1.69E-46 |
| MS.gene054473 | MS.gene23532 | 0.871809 | 5.15E-67 | -1.69E-46 |
| MS.gene054930 | MS.gene23532 | 0.834274 | 3.30E-56 | -1.69E-46 |
| MS.gene054942 | MS.gene23532 | 0.822786 | 1.97E-53 | -1.69E-46 |
| MS.gene054983 | MS.gene23532 | 0.848742 | 5.05E-60 | -1.69E-46 |
| MS.gene055356 | MS.gene23532 | 0.834779 | 2.46E-56 | -1.69E-46 |
| MS.gene055358 | MS.gene23532 | 0.841454 | 4.71E-58 | -1.69E-46 |
| MS.gene055367 | MS.gene23532 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene055422 | MS.gene23532 | 0.809171 | 2.16E-50 | -1.69E-46 |
| MS.gene055428 | MS.gene23532 | 0.826374 | 2.81E-54 | -1.69E-46 |
| MS.gene055604 | MS.gene23532 | 0.809704 | 1.66E-50 | -1.69E-46 |
| MS.gene056723 | MS.gene23532 | 0.823895 | 1.08E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene23532 | 0.823215 | 1.56E-53 | -1.69E-46 |
| MS.gene057121 | MS.gene23532 | 0.870929 | 1.01E-66 | -1.69E-46 |
| MS.gene057245 | MS.gene23532 | 0.826144 | 3.19E-54 | -1.69E-46 |
| MS.gene057469 | MS.gene23532 | 0.859868 | 3.07E-63 | -1.69E-46 |
| MS.gene057750 | MS.gene23532 | 0.811368 | 7.25E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene23532 | 0.846606 | 1.95E-59 | -1.69E-46 |
| MS.gene05811 | MS.gene23532 | 0.841659 | 4.16E-58 | -1.69E-46 |
| MS.gene058142 | MS.gene23532 | 0.829873 | 4.04E-55 | -1.69E-46 |
| MS.gene058426 | MS.gene23532 | 0.80032 | 1.52E-48 | -1.69E-46 |
| MS.gene058710 | MS.gene23532 | 0.800499 | 1.40E-48 | -1.69E-46 |
| MS.gene058736 | MS.gene23532 | 0.809568 | 1.77E-50 | -1.69E-46 |
| MS.gene058739 | MS.gene23532 | 0.828847 | 7.16E-55 | -1.69E-46 |
| MS.gene058749 | MS.gene23532 | 0.802536 | 5.36E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene23532 | 0.803312 | 3.70E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene23532 | 0.837611 | 4.69E-57 | -1.69E-46 |
| MS.gene059128 | MS.gene23532 | 0.820298 | 7.38E-53 | -1.69E-46 |
| MS.gene059247 | MS.gene23532 | 0.804298 | 2.31E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene23532 | 0.82688 | 2.13E-54 | -1.69E-46 |
| MS.gene059462 | MS.gene23532 | 0.806066 | 9.85E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene23532 | 0.801941 | 7.10E-49 | -1.69E-46 |
| MS.gene05984 | MS.gene23532 | 0.845662 | 3.53E-59 | -1.69E-46 |
| MS.gene061040 | MS.gene23532 | -0.806171 | 9.36E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene23532 | 0.828302 | 9.70E-55 | -1.69E-46 |
| MS.gene061114 | MS.gene23532 | -0.837774 | 4.26E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23532.t1 | MTR_7g096170 | 92.140 | 229 | 2 | 2 | 1 | 213 | 82 | 310 | 4.01e-149 | 417 |
| MS.gene23532.t1 | MTR_7g096170 | 91.739 | 230 | 3 | 2 | 1 | 214 | 82 | 311 | 2.86e-148 | 418 |
| MS.gene23532.t1 | MTR_7g096170 | 91.739 | 230 | 3 | 2 | 1 | 214 | 82 | 311 | 3.44e-148 | 417 |
| MS.gene23532.t1 | MTR_7g096170 | 91.121 | 214 | 3 | 2 | 17 | 214 | 1 | 214 | 3.64e-137 | 386 |
| MS.gene23532.t1 | MTR_1g040495 | 56.087 | 230 | 77 | 4 | 1 | 214 | 72 | 293 | 2.05e-72 | 224 |
| MS.gene23532.t1 | MTR_1g076210 | 66.239 | 234 | 57 | 8 | 1 | 214 | 82 | 313 | 7.06e-72 | 224 |
| MS.gene23532.t1 | MTR_1g093280 | 66.239 | 234 | 57 | 8 | 1 | 214 | 82 | 313 | 7.06e-72 | 224 |
| MS.gene23532.t1 | MTR_8g088670 | 44.118 | 238 | 101 | 6 | 2 | 214 | 116 | 346 | 1.54e-55 | 182 |
| MS.gene23532.t1 | MTR_8g088670 | 43.961 | 207 | 99 | 5 | 2 | 198 | 116 | 315 | 1.03e-47 | 160 |
| MS.gene23532.t1 | MTR_8g088670 | 43.137 | 204 | 105 | 4 | 2 | 198 | 116 | 315 | 1.18e-47 | 160 |
| MS.gene23532.t1 | MTR_2g105270 | 40.520 | 269 | 101 | 9 | 1 | 214 | 108 | 372 | 1.83e-43 | 151 |
| MS.gene23532.t1 | MTR_2g105270 | 40.520 | 269 | 101 | 9 | 1 | 214 | 108 | 372 | 3.25e-43 | 150 |
| MS.gene23532.t1 | MTR_5g005240 | 38.129 | 278 | 104 | 7 | 1 | 214 | 92 | 365 | 6.34e-40 | 142 |
| MS.gene23532.t1 | MTR_1g040475 | 56.000 | 125 | 46 | 3 | 1 | 124 | 76 | 192 | 1.28e-37 | 131 |
| MS.gene23532.t1 | MTR_2g105270 | 39.837 | 246 | 104 | 8 | 1 | 206 | 108 | 349 | 2.10e-37 | 134 |
| MS.gene23532.t1 | MTR_8g094880 | 36.187 | 257 | 121 | 6 | 1 | 214 | 92 | 348 | 5.21e-36 | 131 |
| MS.gene23532.t1 | MTR_8g094905 | 36.187 | 257 | 121 | 6 | 1 | 214 | 92 | 348 | 5.21e-36 | 131 |
| MS.gene23532.t1 | MTR_1g106065 | 36.567 | 268 | 113 | 9 | 1 | 214 | 78 | 342 | 8.55e-35 | 128 |
| MS.gene23532.t1 | MTR_5g045590 | 33.333 | 255 | 109 | 8 | 1 | 215 | 97 | 330 | 6.36e-31 | 117 |
| MS.gene23532.t1 | MTR_1g076220 | 48.092 | 131 | 23 | 3 | 99 | 214 | 53 | 153 | 3.60e-26 | 101 |
| MS.gene23532.t1 | MTR_1g055050 | 47.727 | 88 | 44 | 2 | 61 | 147 | 50 | 136 | 1.09e-14 | 71.2 |
| MS.gene23532.t1 | MTR_1g093370 | 40.566 | 106 | 18 | 3 | 124 | 214 | 16 | 91 | 2.41e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 85 | 309 | 1.37e-79 | 241 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 96 | 320 | 1.49e-79 | 242 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 96 | 320 | 1.49e-79 | 242 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 85 | 309 | 1.52e-79 | 241 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 85 | 309 | 2.09e-79 | 241 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 96 | 320 | 2.50e-79 | 241 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 96 | 320 | 9.64e-79 | 241 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 96 | 320 | 1.09e-78 | 241 |
| MS.gene23532.t1 | AT5G09690 | 60.944 | 233 | 64 | 5 | 1 | 214 | 85 | 309 | 1.11e-78 | 241 |
| MS.gene23532.t1 | AT5G64560 | 67.234 | 235 | 56 | 6 | 1 | 214 | 83 | 317 | 7.46e-77 | 236 |
| MS.gene23532.t1 | AT5G64560 | 67.234 | 235 | 56 | 6 | 1 | 214 | 83 | 317 | 1.50e-76 | 236 |
| MS.gene23532.t1 | AT5G09690 | 65.138 | 218 | 64 | 4 | 1 | 214 | 85 | 294 | 6.69e-74 | 228 |
| MS.gene23532.t1 | AT5G09690 | 63.547 | 203 | 62 | 4 | 1 | 199 | 96 | 290 | 1.51e-72 | 222 |
| MS.gene23532.t1 | AT5G09690 | 63.547 | 203 | 62 | 4 | 1 | 199 | 96 | 290 | 1.51e-72 | 222 |
| MS.gene23532.t1 | AT5G09690 | 63.547 | 203 | 62 | 4 | 1 | 199 | 96 | 290 | 1.51e-72 | 222 |
| MS.gene23532.t1 | AT5G09690 | 63.547 | 203 | 62 | 4 | 1 | 199 | 85 | 279 | 1.58e-72 | 222 |
| MS.gene23532.t1 | AT5G09720 | 55.502 | 209 | 78 | 7 | 1 | 202 | 77 | 277 | 3.84e-62 | 196 |
| MS.gene23532.t1 | AT5G09720 | 55.502 | 209 | 78 | 7 | 1 | 202 | 77 | 277 | 3.84e-62 | 196 |
| MS.gene23532.t1 | AT3G58970 | 43.443 | 244 | 102 | 7 | 2 | 214 | 122 | 360 | 4.38e-53 | 176 |
| MS.gene23532.t1 | AT1G16010 | 41.313 | 259 | 106 | 6 | 1 | 214 | 109 | 366 | 3.78e-46 | 158 |
| MS.gene23532.t1 | AT1G16010 | 41.313 | 259 | 106 | 6 | 1 | 214 | 109 | 366 | 3.78e-46 | 158 |
| MS.gene23532.t1 | AT1G16010 | 41.313 | 259 | 106 | 6 | 1 | 214 | 109 | 366 | 3.78e-46 | 158 |
| MS.gene23532.t1 | AT1G80900 | 39.382 | 259 | 112 | 6 | 1 | 214 | 109 | 367 | 8.74e-42 | 147 |
| MS.gene23532.t1 | AT1G80900 | 39.382 | 259 | 112 | 6 | 1 | 214 | 109 | 367 | 8.74e-42 | 147 |
| MS.gene23532.t1 | AT3G19640 | 36.184 | 304 | 103 | 8 | 1 | 214 | 103 | 405 | 4.89e-40 | 143 |
| MS.gene23532.t1 | AT4G28580 | 35.498 | 231 | 121 | 4 | 2 | 212 | 109 | 331 | 1.09e-38 | 138 |
| MS.gene23532.t1 | AT2G03620 | 35.019 | 257 | 106 | 6 | 2 | 215 | 108 | 346 | 2.69e-26 | 105 |
| MS.gene23532.t1 | AT2G03620 | 35.019 | 257 | 106 | 6 | 2 | 215 | 108 | 346 | 2.69e-26 | 105 |
Find 46 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAACATACAGGTAAGTTTA+AGG | 0.206742 | 7.3:+15124450 | MS.gene23532:CDS |
| AAAAGATTTGATTACCTTAG+AGG | 0.251185 | 7.3:-15122891 | None:intergenic |
| ACAGATCAGCAGTCGTAATT+TGG | 0.309187 | 7.3:+15123477 | MS.gene23532:intron |
| TCCATTTGAGTTTCGAGCTT+TGG | 0.329463 | 7.3:+15122784 | MS.gene23532:CDS |
| GACTGCTGCTTATCCAGCTT+TGG | 0.338883 | 7.3:+15122859 | MS.gene23532:CDS |
| CCACTCAAGGTAAGTGTTGC+TGG | 0.361150 | 7.3:+15122388 | MS.gene23532:CDS |
| CACATAACTCTTCTTCTACT+TGG | 0.378469 | 7.3:-15122417 | None:intergenic |
| GGTGAAGGTGGAGAAGAAAA+TGG | 0.378750 | 7.3:+15122448 | MS.gene23532:CDS |
| TTTGGATGAACTAACCTCTA+AGG | 0.407168 | 7.3:+15122877 | MS.gene23532:CDS |
| TAACATACAGGTAAGTTTAA+GGG | 0.415558 | 7.3:+15124451 | MS.gene23532:CDS |
| TCGAGCTTTGGAAGTTGTAT+TGG | 0.424295 | 7.3:+15122796 | MS.gene23532:CDS |
| GGAAGTGCAGCAACACTTCA+AGG | 0.431204 | 7.3:+15123978 | MS.gene23532:CDS |
| CTGTATGTTAATGTAATCTT+CGG | 0.434923 | 7.3:-15124438 | None:intergenic |
| TCCAAAGCTCGAAACTCAAA+TGG | 0.437377 | 7.3:-15122785 | None:intergenic |
| CTTCGTAGCTCTTCAACAAC+AGG | 0.444279 | 7.3:-15122358 | None:intergenic |
| ATATGGACTGTGATGCCAAT+TGG | 0.456144 | 7.3:-15123925 | None:intergenic |
| AGCTTTGGAAGTTGTATTGG+AGG | 0.492401 | 7.3:+15122799 | MS.gene23532:CDS |
| GTAGCTCTGACGGTCCCAAT+TGG | 0.492514 | 7.3:+15123910 | MS.gene23532:CDS |
| TATGGACTGTGATGCCAATT+GGG | 0.507694 | 7.3:-15123924 | None:intergenic |
| ACTTTATTTATCAAGAAAGA+TGG | 0.511194 | 7.3:+15123866 | MS.gene23532:CDS |
| CGAAGATTACATTAACATAC+AGG | 0.512088 | 7.3:+15124439 | MS.gene23532:CDS |
| GAGGTTAGTTCATCCAAAGC+TGG | 0.516706 | 7.3:-15122872 | None:intergenic |
| GGCACAACATCATCATCCAT+TGG | 0.518806 | 7.3:-15122337 | None:intergenic |
| GAAGAGTTATGTGTTCAAGA+AGG | 0.534356 | 7.3:+15122427 | MS.gene23532:CDS |
| CAACTCTTGTCCGTGCATCA+AGG | 0.536066 | 7.3:-15122835 | None:intergenic |
| GAAGTGCAGCAACACTTCAA+GGG | 0.539485 | 7.3:+15123979 | MS.gene23532:CDS |
| GCACAACATCATCATCCATT+GGG | 0.541642 | 7.3:-15122336 | None:intergenic |
| GTCAGAGCTACTTGAGGGAG+AGG | 0.543567 | 7.3:-15123898 | None:intergenic |
| GGACCGTCAGAGCTACTTGA+GGG | 0.544992 | 7.3:-15123903 | None:intergenic |
| AAGGTAAGTGTTGCTGGTCA+AGG | 0.546948 | 7.3:+15122394 | MS.gene23532:CDS |
| CCAGCAACACTTACCTTGAG+TGG | 0.551535 | 7.3:-15122388 | None:intergenic |
| TGTGTTCAAGAAGGTGAAGG+TGG | 0.562146 | 7.3:+15122436 | MS.gene23532:CDS |
| TGGCATCACAGTCCATATCA+AGG | 0.568722 | 7.3:+15123930 | MS.gene23532:CDS |
| AGCTATAATCACTGCTGAAG+AGG | 0.569524 | 7.3:+15122166 | MS.gene23532:CDS |
| TTGTTGAAGAGCTACGAAGA+AGG | 0.575051 | 7.3:+15122362 | MS.gene23532:CDS |
| TTTGTAGTTTCCTTGATGCA+CGG | 0.575385 | 7.3:+15122825 | MS.gene23532:CDS |
| ACGAAGAAGGTTACCACTCA+AGG | 0.578939 | 7.3:+15122375 | MS.gene23532:CDS |
| GGTATTGGTTAGAGACCCAA+TGG | 0.587484 | 7.3:+15122321 | MS.gene23532:intron |
| TCTCCCTCAAGTAGCTCTGA+CGG | 0.594034 | 7.3:+15123900 | MS.gene23532:CDS |
| TAATTTCTTGTAGATAAGAG+AGG | 0.596735 | 7.3:+15123803 | MS.gene23532:intron |
| TTATGTGTTCAAGAAGGTGA+AGG | 0.608709 | 7.3:+15122433 | MS.gene23532:CDS |
| AAGTGCAGCAACACTTCAAG+GGG | 0.628244 | 7.3:+15123980 | MS.gene23532:CDS |
| AGAGCTTGAGATGTTACTAG+AGG | 0.632089 | 7.3:+15124016 | MS.gene23532:CDS |
| GTTGACAAATCGTGTTCACA+AGG | 0.641613 | 7.3:+15123534 | MS.gene23532:CDS |
| GGGACCGTCAGAGCTACTTG+AGG | 0.654969 | 7.3:-15123904 | None:intergenic |
| AAAATACACAGATCAAGCAG+AGG | 0.682981 | 7.3:+15123957 | MS.gene23532:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTAATCAAAGTAAT+TGG | - | chr7.3:15123784-15123803 | None:intergenic | 10.0% |
| !! | TATATAATATGAATATAGTA+AGG | + | chr7.3:15123282-15123301 | MS.gene23532:intron | 10.0% |
| !!! | AAATAACAAATAGATATTTT+AGG | + | chr7.3:15123564-15123583 | MS.gene23532:intron | 10.0% |
| !!! | AGATTTTATTTTATTATCAT+TGG | + | chr7.3:15122654-15122673 | MS.gene23532:intron | 10.0% |
| !! | ATAAAAAAGTCATAATTGTT+AGG | - | chr7.3:15122570-15122589 | None:intergenic | 15.0% |
| !! | ATTAAACTAAAATTCAGTTA+AGG | - | chr7.3:15123021-15123040 | None:intergenic | 15.0% |
| !! | TATACTAATAATAACAACAT+TGG | + | chr7.3:15123233-15123252 | MS.gene23532:intron | 15.0% |
| !!! | AATACTGATTAATTAATGTT+TGG | + | chr7.3:15123356-15123375 | MS.gene23532:intron | 15.0% |
| !!! | AATTAATCAGTATTTTTTTC+AGG | - | chr7.3:15123350-15123369 | None:intergenic | 15.0% |
| !!! | GTGTTGTTTTTAATAATAAT+GGG | + | chr7.3:15122732-15122751 | MS.gene23532:intron | 15.0% |
| !!! | TGTGTTGTTTTTAATAATAA+TGG | + | chr7.3:15122731-15122750 | MS.gene23532:intron | 15.0% |
| !!! | TGTTTCTTATACATTTTATA+TGG | - | chr7.3:15123679-15123698 | None:intergenic | 15.0% |
| !! | ACAACATGCATATATATTAT+AGG | - | chr7.3:15123387-15123406 | None:intergenic | 20.0% |
| !! | ATAAATGAAAATCTCTCATT+TGG | + | chr7.3:15124118-15124137 | MS.gene23532:intron | 20.0% |
| !! | ATTGGATATAAATATGTTGA+AGG | - | chr7.3:15123766-15123785 | None:intergenic | 20.0% |
| !! | TAAAAATGATGAAGTGAAAA+TGG | + | chr7.3:15122266-15122285 | MS.gene23532:intron | 20.0% |
| !! | TAAACACAAAAAATATCTCA+TGG | - | chr7.3:15123136-15123155 | None:intergenic | 20.0% |
| !! | TAATAGTCTCTAATTTCTAT+TGG | - | chr7.3:15124096-15124115 | None:intergenic | 20.0% |
| !! | TTGTTAGTTAGAAATATACT+CGG | + | chr7.3:15122976-15122995 | MS.gene23532:intron | 20.0% |
| !!! | AAAATGGTAAGCTTTTTTTT+TGG | + | chr7.3:15122464-15122483 | MS.gene23532:intron | 20.0% |
| !!! | ACAATTATTTGTTAGACTTT+AGG | - | chr7.3:15122960-15122979 | None:intergenic | 20.0% |
| !!! | ACTTTATTTATCAAGAAAGA+TGG | + | chr7.3:15123866-15123885 | MS.gene23532:CDS | 20.0% |
| !!! | GGTAATTTTTTCTTTTCAAA+AGG | + | chr7.3:15123585-15123604 | MS.gene23532:intron | 20.0% |
| !!! | GTTTGTTGTTGTTTTATTAT+AGG | + | chr7.3:15122300-15122319 | MS.gene23532:intron | 20.0% |
| !!! | TATAGTAAGGTTTTTATCAT+TGG | + | chr7.3:15123295-15123314 | MS.gene23532:intron | 20.0% |
| !!! | TGTTGTTTTATTATAGGTAT+TGG | + | chr7.3:15122306-15122325 | MS.gene23532:intron | 20.0% |
| !!! | TTTTTATTAGATAGAACTTG+TGG | + | chr7.3:15122583-15122602 | MS.gene23532:intron | 20.0% |
| !!! | TTTTTTGTGTTTATATCCAA+AGG | + | chr7.3:15123143-15123162 | MS.gene23532:intron | 20.0% |
| ! | AAAAGATTTGATTACCTTAG+AGG | - | chr7.3:15122894-15122913 | None:intergenic | 25.0% |
| ! | AACCAAAGTGAAGATTATTA+AGG | - | chr7.3:15123442-15123461 | None:intergenic | 25.0% |
| ! | CTGTATGTTAATGTAATCTT+CGG | - | chr7.3:15124441-15124460 | None:intergenic | 25.0% |
| ! | GTATAGAAACGAAATTACAA+TGG | + | chr7.3:15122486-15122505 | MS.gene23532:intron | 25.0% |
| ! | TAACATACAGGTAAGTTTAA+GGG | + | chr7.3:15124451-15124470 | MS.gene23532:CDS | 25.0% |
| ! | TAATTTCTTGTAGATAAGAG+AGG | + | chr7.3:15123803-15123822 | MS.gene23532:intron | 25.0% |
| ! | TACACACAAATAATACTTTG+AGG | - | chr7.3:15123108-15123127 | None:intergenic | 25.0% |
| ! | TCCATCAATTTGTATGAAAT+AGG | - | chr7.3:15124293-15124312 | None:intergenic | 25.0% |
| ! | TTAACATACAGGTAAGTTTA+AGG | + | chr7.3:15124450-15124469 | MS.gene23532:CDS | 25.0% |
| ! | TTGTGAGAAATACATTGTAT+CGG | + | chr7.3:15122623-15122642 | MS.gene23532:intron | 25.0% |
| !! | AAGGTTTTTATCATTGGAAA+GGG | + | chr7.3:15123301-15123320 | MS.gene23532:intron | 25.0% |
| !! | AATTAAAAAGTGCAATGACT+AGG | + | chr7.3:15123512-15123531 | MS.gene23532:CDS | 25.0% |
| !! | AATTAGCTTATGATGTACTA+CGG | + | chr7.3:15124243-15124262 | MS.gene23532:intron | 25.0% |
| !! | TAAGGTTTTTATCATTGGAA+AGG | + | chr7.3:15123300-15123319 | MS.gene23532:intron | 25.0% |
| !! | TACTTTGAGGAAAGAAATAA+AGG | - | chr7.3:15123095-15123114 | None:intergenic | 25.0% |
| !! | TGATTTCTGTTTTACACTTT+AGG | + | chr7.3:15124394-15124413 | MS.gene23532:intron | 25.0% |
| !!! | CTAATTTCTATTGGTTTTTC+TGG | - | chr7.3:15124087-15124106 | None:intergenic | 25.0% |
| !!! | TGTATTTTTGAACCTTGATA+TGG | - | chr7.3:15123945-15123964 | None:intergenic | 25.0% |
| ATAAAGGAGATGTGATATGT+CGG | - | chr7.3:15123079-15123098 | None:intergenic | 30.0% | |
| CATAAGCTAATTCATGGAAA+TGG | - | chr7.3:15124235-15124254 | None:intergenic | 30.0% | |
| CGAAGATTACATTAACATAC+AGG | + | chr7.3:15124439-15124458 | MS.gene23532:CDS | 30.0% | |
| CGTCAAATTAAATGTCTCAA+CGG | + | chr7.3:15123614-15123633 | MS.gene23532:intron | 30.0% | |
| CTCCTTAATAATCTTCACTT+TGG | + | chr7.3:15123437-15123456 | MS.gene23532:intron | 30.0% | |
| GCCTATTTCATACAAATTGA+TGG | + | chr7.3:15124289-15124308 | MS.gene23532:intron | 30.0% | |
| GTACATCATAAGCTAATTCA+TGG | - | chr7.3:15124241-15124260 | None:intergenic | 30.0% | |
| TCAGTTAAGGTTAGATTGTT+TGG | - | chr7.3:15123008-15123027 | None:intergenic | 30.0% | |
| TCTAGTGTTGTATAGTTTCA+TGG | + | chr7.3:15122682-15122701 | MS.gene23532:intron | 30.0% | |
| TGCATGTTGTCACAAAATTA+TGG | + | chr7.3:15123397-15123416 | MS.gene23532:intron | 30.0% | |
| TGTGTTTATATCCAAAGGTT+AGG | + | chr7.3:15123148-15123167 | MS.gene23532:intron | 30.0% | |
| TTTATATCCAAAGGTTAGGA+TGG | + | chr7.3:15123152-15123171 | MS.gene23532:intron | 30.0% | |
| ! | AGGTTTTTATCATTGGAAAG+GGG | + | chr7.3:15123302-15123321 | MS.gene23532:intron | 30.0% |
| ! | CTAATTCATGGAAATGGATT+AGG | - | chr7.3:15124229-15124248 | None:intergenic | 30.0% |
| ! | TTTAGTTCACTGTTATTACG+TGG | - | chr7.3:15124332-15124351 | None:intergenic | 30.0% |
| !! | AATAATGGGAAATTGACTTG+TGG | + | chr7.3:15122746-15122765 | MS.gene23532:intron | 30.0% |
| !! | AGACATTTAATTTGACGACT+AGG | - | chr7.3:15123611-15123630 | None:intergenic | 30.0% |
| !! | CATAATTGTTAGGTTGAATG+CGG | - | chr7.3:15122560-15122579 | None:intergenic | 30.0% |
| AAAATACACAGATCAAGCAG+AGG | + | chr7.3:15123957-15123976 | MS.gene23532:CDS | 35.0% | |
| ACCATTGGTACTGTATTACA+AGG | + | chr7.3:15123643-15123662 | MS.gene23532:intron | 35.0% | |
| ACCTTGTAATACAGTACCAA+TGG | - | chr7.3:15123647-15123666 | None:intergenic | 35.0% | |
| CACATAACTCTTCTTCTACT+TGG | - | chr7.3:15122420-15122439 | None:intergenic | 35.0% | |
| GAAGAGTTATGTGTTCAAGA+AGG | + | chr7.3:15122427-15122446 | MS.gene23532:CDS | 35.0% | |
| TAAGGAGTAGAAAGAAACGA+GGG | - | chr7.3:15123424-15123443 | None:intergenic | 35.0% | |
| TGAAGTTGTCTGATCAAGAT+CGG | + | chr7.3:15124154-15124173 | MS.gene23532:intron | 35.0% | |
| TGAATAATGTCGTTCTTTGC+AGG | + | chr7.3:15124267-15124286 | MS.gene23532:intron | 35.0% | |
| TGTCATCATCATCATCAAGT+AGG | - | chr7.3:15123839-15123858 | None:intergenic | 35.0% | |
| TTAAGGAGTAGAAAGAAACG+AGG | - | chr7.3:15123425-15123444 | None:intergenic | 35.0% | |
| TTATGTGTTCAAGAAGGTGA+AGG | + | chr7.3:15122433-15122452 | MS.gene23532:CDS | 35.0% | |
| TTTGGATGAACTAACCTCTA+AGG | + | chr7.3:15122877-15122896 | MS.gene23532:CDS | 35.0% | |
| TTTGTAGTTTCCTTGATGCA+CGG | + | chr7.3:15122825-15122844 | MS.gene23532:CDS | 35.0% | |
| !! | ACTTGATGATGATGATGACA+TGG | + | chr7.3:15123839-15123858 | MS.gene23532:CDS | 35.0% |
| !!! | TCTCAACGGTTTTTTACCAT+TGG | + | chr7.3:15123628-15123647 | MS.gene23532:intron | 35.0% |
| ACAGATCAGCAGTCGTAATT+TGG | + | chr7.3:15123477-15123496 | MS.gene23532:intron | 40.0% | |
| AGAGCTTGAGATGTTACTAG+AGG | + | chr7.3:15124016-15124035 | MS.gene23532:CDS | 40.0% | |
| AGCTATAATCACTGCTGAAG+AGG | + | chr7.3:15122166-15122185 | MS.gene23532:CDS | 40.0% | |
| ATATCCAAAGGTTAGGATGG+CGG | + | chr7.3:15123155-15123174 | MS.gene23532:intron | 40.0% | |
| GCACAACATCATCATCCATT+GGG | - | chr7.3:15122339-15122358 | None:intergenic | 40.0% | |
| GTTGACAAATCGTGTTCACA+AGG | + | chr7.3:15123534-15123553 | MS.gene23532:CDS | 40.0% | |
| TCCAAAGCTCGAAACTCAAA+TGG | - | chr7.3:15122788-15122807 | None:intergenic | 40.0% | |
| TTGTTGAAGAGCTACGAAGA+AGG | + | chr7.3:15122362-15122381 | MS.gene23532:CDS | 40.0% | |
| ! | ATATGGACTGTGATGCCAAT+TGG | - | chr7.3:15123928-15123947 | None:intergenic | 40.0% |
| ! | TATGGACTGTGATGCCAATT+GGG | - | chr7.3:15123927-15123946 | None:intergenic | 40.0% |
| ! | TCCATTTGAGTTTCGAGCTT+TGG | + | chr7.3:15122784-15122803 | MS.gene23532:CDS | 40.0% |
| !! | AATGGGAAATTGACTTGTGG+TGG | + | chr7.3:15122749-15122768 | MS.gene23532:intron | 40.0% |
| !! | AGCTTTGGAAGTTGTATTGG+AGG | + | chr7.3:15122799-15122818 | MS.gene23532:CDS | 40.0% |
| !! | TCGAGCTTTGGAAGTTGTAT+TGG | + | chr7.3:15122796-15122815 | MS.gene23532:CDS | 40.0% |
| !! | TTAGGTTGAATGCGGTAATC+AGG | - | chr7.3:15122552-15122571 | None:intergenic | 40.0% |
| AAGTGCAGCAACACTTCAAG+GGG | + | chr7.3:15123980-15123999 | MS.gene23532:CDS | 45.0% | |
| ACGAAGAAGGTTACCACTCA+AGG | + | chr7.3:15122375-15122394 | MS.gene23532:CDS | 45.0% | |
| ATCTCTCATTTGGCGACAGT+CGG | + | chr7.3:15124128-15124147 | MS.gene23532:intron | 45.0% | |
| CTTCGTAGCTCTTCAACAAC+AGG | - | chr7.3:15122361-15122380 | None:intergenic | 45.0% | |
| GAAGTGCAGCAACACTTCAA+GGG | + | chr7.3:15123979-15123998 | MS.gene23532:CDS | 45.0% | |
| GGCACAACATCATCATCCAT+TGG | - | chr7.3:15122340-15122359 | None:intergenic | 45.0% | |
| GGTGAAGGTGGAGAAGAAAA+TGG | + | chr7.3:15122448-15122467 | MS.gene23532:CDS | 45.0% | |
| GTTGTCTGATCAAGATCGGA+CGG | + | chr7.3:15124158-15124177 | MS.gene23532:intron | 45.0% | |
| TAGAACTCACACACGAGTAG+AGG | + | chr7.3:15122513-15122532 | MS.gene23532:intron | 45.0% | |
| TGGCATCACAGTCCATATCA+AGG | + | chr7.3:15123930-15123949 | MS.gene23532:CDS | 45.0% | |
| TGTGTTCAAGAAGGTGAAGG+TGG | + | chr7.3:15122436-15122455 | MS.gene23532:CDS | 45.0% | |
| ! | AAGGTAAGTGTTGCTGGTCA+AGG | + | chr7.3:15122394-15122413 | MS.gene23532:CDS | 45.0% |
| ! | GAGGTTAGTTCATCCAAAGC+TGG | - | chr7.3:15122875-15122894 | None:intergenic | 45.0% |
| !! | GGTATTGGTTAGAGACCCAA+TGG | + | chr7.3:15122321-15122340 | MS.gene23532:intron | 45.0% |
| CAACTCTTGTCCGTGCATCA+AGG | - | chr7.3:15122838-15122857 | None:intergenic | 50.0% | |
| CCAGCAACACTTACCTTGAG+TGG | - | chr7.3:15122391-15122410 | None:intergenic | 50.0% | |
| GTCGGTGATGTGATGAGAAG+AGG | - | chr7.3:15123061-15123080 | None:intergenic | 50.0% | |
| TCACACACGAGTAGAGGAAC+CGG | + | chr7.3:15122519-15122538 | MS.gene23532:intron | 50.0% | |
| TTAGCCGCCATCCTAACCTT+TGG | - | chr7.3:15123162-15123181 | None:intergenic | 50.0% | |
| ! | CCACTCAAGGTAAGTGTTGC+TGG | + | chr7.3:15122388-15122407 | MS.gene23532:CDS | 50.0% |
| ! | GACTGCTGCTTATCCAGCTT+TGG | + | chr7.3:15122859-15122878 | MS.gene23532:CDS | 50.0% |
| ! | GGAAGTGCAGCAACACTTCA+AGG | + | chr7.3:15123978-15123997 | MS.gene23532:CDS | 50.0% |
| !! | TCTCCCTCAAGTAGCTCTGA+CGG | + | chr7.3:15123900-15123919 | MS.gene23532:CDS | 50.0% |
| GCGGTAATCAGGTTCGAGTC+CGG | - | chr7.3:15122541-15122560 | None:intergenic | 55.0% | |
| GGACCGTCAGAGCTACTTGA+GGG | - | chr7.3:15123906-15123925 | None:intergenic | 55.0% | |
| GTCAGAGCTACTTGAGGGAG+AGG | - | chr7.3:15123901-15123920 | None:intergenic | 55.0% | |
| !! | GTAGCTCTGACGGTCCCAAT+TGG | + | chr7.3:15123910-15123929 | MS.gene23532:CDS | 55.0% |
| GGGACCGTCAGAGCTACTTG+AGG | - | chr7.3:15123907-15123926 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 15122158 | 15124484 | 15122158 | ID=MS.gene23532 |
| chr7.3 | mRNA | 15122158 | 15124484 | 15122158 | ID=MS.gene23532.t1;Parent=MS.gene23532 |
| chr7.3 | exon | 15122158 | 15122187 | 15122158 | ID=MS.gene23532.t1.exon1;Parent=MS.gene23532.t1 |
| chr7.3 | CDS | 15122158 | 15122187 | 15122158 | ID=cds.MS.gene23532.t1;Parent=MS.gene23532.t1 |
| chr7.3 | exon | 15122322 | 15122469 | 15122322 | ID=MS.gene23532.t1.exon2;Parent=MS.gene23532.t1 |
| chr7.3 | CDS | 15122322 | 15122469 | 15122322 | ID=cds.MS.gene23532.t1;Parent=MS.gene23532.t1 |
| chr7.3 | exon | 15122780 | 15122898 | 15122780 | ID=MS.gene23532.t1.exon3;Parent=MS.gene23532.t1 |
| chr7.3 | CDS | 15122780 | 15122898 | 15122780 | ID=cds.MS.gene23532.t1;Parent=MS.gene23532.t1 |
| chr7.3 | exon | 15123481 | 15123555 | 15123481 | ID=MS.gene23532.t1.exon4;Parent=MS.gene23532.t1 |
| chr7.3 | CDS | 15123481 | 15123555 | 15123481 | ID=cds.MS.gene23532.t1;Parent=MS.gene23532.t1 |
| chr7.3 | exon | 15123816 | 15124037 | 15123816 | ID=MS.gene23532.t1.exon5;Parent=MS.gene23532.t1 |
| chr7.3 | CDS | 15123816 | 15124037 | 15123816 | ID=cds.MS.gene23532.t1;Parent=MS.gene23532.t1 |
| chr7.3 | exon | 15124416 | 15124484 | 15124416 | ID=MS.gene23532.t1.exon6;Parent=MS.gene23532.t1 |
| chr7.3 | CDS | 15124416 | 15124484 | 15124416 | ID=cds.MS.gene23532.t1;Parent=MS.gene23532.t1 |
| Gene Sequence |
| Protein sequence |
