Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29492.t1 | XP_003616416.1 | 95.5 | 616 | 28 | 0 | 1 | 616 | 1 | 616 | 0.00E+00 | 1135.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29492.t1 | Q9FFY9 | 44.4 | 648 | 297 | 15 | 1 | 606 | 1 | 627 | 1.3e-119 | 431.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29492.t1 | G7KBS1 | 95.5 | 616 | 28 | 0 | 1 | 616 | 1 | 616 | 0.0e+00 | 1135.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049580 | MS.gene29492 | 0.838267 | 3.18E-57 | -1.69E-46 |
| MS.gene049653 | MS.gene29492 | 0.830078 | 3.60E-55 | -1.69E-46 |
| MS.gene049824 | MS.gene29492 | 0.812035 | 5.19E-51 | -1.69E-46 |
| MS.gene049825 | MS.gene29492 | 0.830447 | 2.92E-55 | -1.69E-46 |
| MS.gene049863 | MS.gene29492 | 0.812208 | 4.76E-51 | -1.69E-46 |
| MS.gene049873 | MS.gene29492 | 0.813025 | 3.15E-51 | -1.69E-46 |
| MS.gene050277 | MS.gene29492 | 0.830877 | 2.29E-55 | -1.69E-46 |
| MS.gene050559 | MS.gene29492 | 0.808468 | 3.05E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene29492 | 0.811587 | 6.50E-51 | -1.69E-46 |
| MS.gene050945 | MS.gene29492 | 0.818671 | 1.74E-52 | -1.69E-46 |
| MS.gene050955 | MS.gene29492 | 0.816289 | 5.97E-52 | -1.69E-46 |
| MS.gene051343 | MS.gene29492 | 0.803835 | 2.88E-49 | -1.69E-46 |
| MS.gene05134 | MS.gene29492 | 0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene051902 | MS.gene29492 | 0.805612 | 1.23E-49 | -1.69E-46 |
| MS.gene051903 | MS.gene29492 | 0.813667 | 2.28E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene29492 | 0.84187 | 3.65E-58 | -1.69E-46 |
| MS.gene052286 | MS.gene29492 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene053006 | MS.gene29492 | 0.80778 | 4.28E-50 | -1.69E-46 |
| MS.gene053045 | MS.gene29492 | 0.814267 | 1.68E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene29492 | 0.809371 | 1.96E-50 | -1.69E-46 |
| MS.gene053294 | MS.gene29492 | 0.821066 | 4.92E-53 | -1.69E-46 |
| MS.gene053401 | MS.gene29492 | 0.827024 | 1.97E-54 | -1.69E-46 |
| MS.gene05364 | MS.gene29492 | 0.832938 | 7.10E-56 | -1.69E-46 |
| MS.gene053931 | MS.gene29492 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene053963 | MS.gene29492 | 0.807025 | 6.18E-50 | -1.69E-46 |
| MS.gene053995 | MS.gene29492 | 0.835839 | 1.33E-56 | -1.69E-46 |
| MS.gene054403 | MS.gene29492 | 0.814519 | 1.48E-51 | -1.69E-46 |
| MS.gene054413 | MS.gene29492 | 0.804916 | 1.72E-49 | -1.69E-46 |
| MS.gene05469 | MS.gene29492 | 0.829594 | 4.72E-55 | -1.69E-46 |
| MS.gene055374 | MS.gene29492 | 0.812804 | 3.53E-51 | -1.69E-46 |
| MS.gene05548 | MS.gene29492 | 0.842176 | 3.03E-58 | -1.69E-46 |
| MS.gene055555 | MS.gene29492 | 0.823365 | 1.44E-53 | -1.69E-46 |
| MS.gene055808 | MS.gene29492 | 0.806297 | 8.81E-50 | -1.69E-46 |
| MS.gene055841 | MS.gene29492 | 0.816749 | 4.71E-52 | -1.69E-46 |
| MS.gene056631 | MS.gene29492 | 0.830985 | 2.16E-55 | -1.69E-46 |
| MS.gene056986 | MS.gene29492 | 0.851839 | 6.83E-61 | -1.69E-46 |
| MS.gene057102 | MS.gene29492 | 0.84552 | 3.86E-59 | -1.69E-46 |
| MS.gene057208 | MS.gene29492 | 0.807236 | 5.58E-50 | -1.69E-46 |
| MS.gene057234 | MS.gene29492 | 0.813327 | 2.71E-51 | -1.69E-46 |
| MS.gene057392 | MS.gene29492 | 0.806406 | 8.35E-50 | -1.69E-46 |
| MS.gene057694 | MS.gene29492 | 0.815904 | 7.28E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene29492 | 0.871975 | 4.53E-67 | -1.69E-46 |
| MS.gene05795 | MS.gene29492 | 0.811445 | 6.97E-51 | -1.69E-46 |
| MS.gene057999 | MS.gene29492 | 0.806884 | 6.62E-50 | -1.69E-46 |
| MS.gene058008 | MS.gene29492 | 0.807102 | 5.96E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene29492 | 0.807964 | 3.91E-50 | -1.69E-46 |
| MS.gene059317 | MS.gene29492 | 0.800974 | 1.12E-48 | -1.69E-46 |
| MS.gene05978 | MS.gene29492 | 0.803131 | 4.04E-49 | -1.69E-46 |
| MS.gene059830 | MS.gene29492 | 0.805547 | 1.27E-49 | -1.69E-46 |
| MS.gene05985 | MS.gene29492 | -0.838432 | 2.89E-57 | -1.69E-46 |
| MS.gene060244 | MS.gene29492 | 0.803865 | 2.84E-49 | -1.69E-46 |
| MS.gene060365 | MS.gene29492 | 0.831657 | 1.47E-55 | -1.69E-46 |
| MS.gene060935 | MS.gene29492 | 0.819075 | 1.40E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene29492 | 0.809937 | 1.48E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29492.t1 | MTR_5g080010 | 96.753 | 616 | 20 | 0 | 1 | 616 | 1 | 616 | 0.0 | 1222 |
| MS.gene29492.t1 | MTR_5g080010 | 95.765 | 425 | 18 | 0 | 1 | 425 | 1 | 425 | 0.0 | 835 |
| MS.gene29492.t1 | MTR_3g067935 | 53.125 | 640 | 251 | 13 | 1 | 606 | 1 | 625 | 0.0 | 581 |
| MS.gene29492.t1 | MTR_2g097290 | 42.857 | 469 | 224 | 8 | 157 | 595 | 253 | 707 | 7.15e-105 | 333 |
| MS.gene29492.t1 | MTR_7g061840 | 36.850 | 673 | 292 | 21 | 1 | 604 | 1 | 609 | 1.30e-104 | 329 |
| MS.gene29492.t1 | MTR_2g097290 | 37.379 | 412 | 210 | 10 | 157 | 536 | 253 | 648 | 1.28e-61 | 217 |
| MS.gene29492.t1 | MTR_2g097290 | 30.131 | 229 | 139 | 4 | 157 | 367 | 253 | 478 | 6.67e-15 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29492.t1 | AT5G13820 | 44.290 | 648 | 298 | 14 | 1 | 606 | 1 | 627 | 1.49e-151 | 451 |
| MS.gene29492.t1 | AT5G13820 | 44.290 | 648 | 298 | 14 | 1 | 606 | 1 | 627 | 1.49e-151 | 451 |
| MS.gene29492.t1 | AT3G12560 | 42.016 | 645 | 287 | 16 | 1 | 604 | 1 | 599 | 6.93e-139 | 418 |
| MS.gene29492.t1 | AT3G12560 | 42.016 | 645 | 287 | 16 | 1 | 604 | 1 | 599 | 6.93e-139 | 418 |
| MS.gene29492.t1 | AT3G46590 | 37.805 | 656 | 253 | 22 | 1 | 612 | 1 | 545 | 1.01e-99 | 315 |
| MS.gene29492.t1 | AT3G46590 | 37.595 | 657 | 254 | 23 | 1 | 612 | 1 | 546 | 7.43e-99 | 312 |
| MS.gene29492.t1 | AT3G46590 | 37.595 | 657 | 248 | 23 | 1 | 612 | 1 | 540 | 1.04e-97 | 309 |
| MS.gene29492.t1 | AT3G46590 | 37.886 | 615 | 227 | 22 | 42 | 612 | 2 | 505 | 1.71e-92 | 295 |
| MS.gene29492.t1 | AT5G59430 | 41.135 | 423 | 187 | 11 | 189 | 603 | 188 | 556 | 5.57e-78 | 258 |
| MS.gene29492.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 188 | 549 | 5.14e-77 | 256 |
| MS.gene29492.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 188 | 549 | 5.14e-77 | 256 |
| MS.gene29492.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 188 | 549 | 5.14e-77 | 256 |
| MS.gene29492.t1 | AT5G59430 | 41.205 | 415 | 183 | 10 | 189 | 595 | 187 | 548 | 5.46e-77 | 256 |
| MS.gene29492.t1 | AT3G53790 | 71.818 | 110 | 27 | 2 | 490 | 595 | 287 | 396 | 1.76e-43 | 160 |
| MS.gene29492.t1 | AT3G53790 | 37.158 | 183 | 101 | 5 | 259 | 436 | 119 | 292 | 1.30e-19 | 92.0 |
| MS.gene29492.t1 | AT3G46590 | 34.204 | 421 | 200 | 18 | 1 | 399 | 1 | 366 | 1.18e-40 | 153 |
Find 147 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCCTCCAATTACTTTCTT+AGG | 0.109494 | 5.3:-64690071 | None:intergenic |
| TGCAACTGTTGCTTCATTAA+AGG | 0.170101 | 5.3:+64690285 | MS.gene29492:CDS |
| ATGATGACGAAAACTTTATT+AGG | 0.242004 | 5.3:+64689497 | MS.gene29492:CDS |
| GGAGCTATTGGATAGGGTTT+TGG | 0.246722 | 5.3:+64692302 | MS.gene29492:CDS |
| AATTACTTTCTTAGGGGAAT+TGG | 0.254177 | 5.3:-64690063 | None:intergenic |
| GGAAACAATTCCCCACAAAA+TGG | 0.254603 | 5.3:-64689421 | None:intergenic |
| AATTCCCCTAAGAAAGTAAT+TGG | 0.278506 | 5.3:+64690065 | MS.gene29492:CDS |
| AGAGACTTGGTAATGGATTC+AGG | 0.281628 | 5.3:+64688862 | MS.gene29492:CDS |
| GAAGCAACAGTTGCAGTTTC+GGG | 0.282983 | 5.3:-64690277 | None:intergenic |
| TGCAAAAGTTCGCGTTTCTA+AGG | 0.302423 | 5.3:+64690109 | MS.gene29492:CDS |
| TTACTTACTCTTACAGATCT+TGG | 0.307105 | 5.3:-64688915 | None:intergenic |
| TGGTTTGTGTGCAGGATAAA+TGG | 0.309116 | 5.3:+64692217 | MS.gene29492:intron |
| TGAAGCAACAGTTGCAGTTT+CGG | 0.311212 | 5.3:-64690278 | None:intergenic |
| AGTTTCGCATCGAGTCATTC+AGG | 0.318139 | 5.3:+64690230 | MS.gene29492:CDS |
| TTCAAATTGGAGAATAGGTT+TGG | 0.318263 | 5.3:+64689271 | MS.gene29492:CDS |
| TCCTCCTTGCTTACAAATAC+TGG | 0.330363 | 5.3:+64691179 | MS.gene29492:CDS |
| ACATTGCACGCAAAATAATT+AGG | 0.331937 | 5.3:+64689566 | MS.gene29492:CDS |
| CGAAATCGCTCTTCTGTTAA+CGG | 0.334359 | 5.3:-64689142 | None:intergenic |
| GAGGCGGTGATGACTATAAT+AGG | 0.341788 | 5.3:+64690471 | MS.gene29492:CDS |
| GGGAGGAATGCTAGTAAGTT+AGG | 0.342627 | 5.3:+64689466 | MS.gene29492:CDS |
| AGGGATTTCTGTTGCCAAAC+AGG | 0.342636 | 5.3:+64691154 | MS.gene29492:CDS |
| GGAACTCCCTCCATAGATTC+AGG | 0.342756 | 5.3:+64691134 | MS.gene29492:CDS |
| TGGAGCAACCTTCCAGTGTT+TGG | 0.343786 | 5.3:-64689608 | None:intergenic |
| TTCCTCCAATTACTTTCTTA+GGG | 0.346950 | 5.3:-64690070 | None:intergenic |
| GCCAGTTCCTCAGGAGCTAT+TGG | 0.348630 | 5.3:+64692290 | MS.gene29492:CDS |
| CTTGGACATCTAGGTACCTT+AGG | 0.349158 | 5.3:-64688897 | None:intergenic |
| TCAACTTCAGACACAGAAAA+TGG | 0.357936 | 5.3:-64691407 | None:intergenic |
| GCATGTTGGTGTTCTTGTTA+AGG | 0.368440 | 5.3:+64690503 | MS.gene29492:CDS |
| AACCTTCCAGTGTTTGGAAT+TGG | 0.390971 | 5.3:-64689602 | None:intergenic |
| CGCGTTTCTAAGGATTCTAA+TGG | 0.394563 | 5.3:+64690119 | MS.gene29492:CDS |
| TCCAATAGCTCCTGAGGAAC+TGG | 0.395946 | 5.3:-64692291 | None:intergenic |
| TTCAGACTTCACATTATTGT+TGG | 0.402330 | 5.3:-64689245 | None:intergenic |
| GCTTCTCCAGTTGTTTGTGC+TGG | 0.408670 | 5.3:+64690630 | MS.gene29492:CDS |
| AAGCAAGGAGGAACCCTGTT+TGG | 0.410467 | 5.3:-64691168 | None:intergenic |
| TGTTCACAATCTTTCAACTT+TGG | 0.411776 | 5.3:-64689628 | None:intergenic |
| AACAGAAATCCCTGAATCTA+TGG | 0.411949 | 5.3:-64691144 | None:intergenic |
| GGATCACCAGCACAAACAAC+TGG | 0.414617 | 5.3:-64690636 | None:intergenic |
| CATGTTGGTGTTCTTGTTAA+GGG | 0.416802 | 5.3:+64690504 | MS.gene29492:CDS |
| GCTTGACATGCTGCTTGGAT+TGG | 0.423506 | 5.3:-64692350 | None:intergenic |
| TGACATGCTGCTTGGATTGG+TGG | 0.426360 | 5.3:-64692347 | None:intergenic |
| GAAACAATTCCCCACAAAAT+GGG | 0.429990 | 5.3:-64689420 | None:intergenic |
| GGAACGTCAACGTAAAGTTC+TGG | 0.430171 | 5.3:-64690256 | None:intergenic |
| CATCACGAGGCTGACAGTTC+AGG | 0.432205 | 5.3:+64689334 | MS.gene29492:CDS |
| TAATGGATTCAGGGACTATC+AGG | 0.432252 | 5.3:+64688872 | MS.gene29492:CDS |
| GAGAGGACAGCCAGTTCCTC+AGG | 0.432830 | 5.3:+64692281 | MS.gene29492:CDS |
| TTGATGCTTGACATGCTGCT+TGG | 0.441541 | 5.3:-64692355 | None:intergenic |
| GATAAACTAACACAAGATTC+CGG | 0.452961 | 5.3:+64691281 | MS.gene29492:CDS |
| CTTACAGATCTTGGACATCT+AGG | 0.453561 | 5.3:-64688906 | None:intergenic |
| GTTCATGCAGTTGAGGAAGT+TGG | 0.454012 | 5.3:+64691437 | MS.gene29492:CDS |
| CAAGGGAAGAAGCTGATTCA+TGG | 0.454467 | 5.3:-64691223 | None:intergenic |
| TTCCTTGAAAAGGAAGCATT+GGG | 0.461169 | 5.3:-64689442 | None:intergenic |
| TCCTCAGGAGCTATTGGATA+GGG | 0.470302 | 5.3:+64692296 | MS.gene29492:CDS |
| ATTCCTCCCATTCCTTGAAA+AGG | 0.474110 | 5.3:-64689452 | None:intergenic |
| TAGGACTTATGTAGACTTGA+AGG | 0.479281 | 5.3:+64691585 | MS.gene29492:CDS |
| GGCTGTCCTCTCCTTTGTTG+AGG | 0.480024 | 5.3:-64692270 | None:intergenic |
| ATTCCTTGAAAAGGAAGCAT+TGG | 0.481452 | 5.3:-64689443 | None:intergenic |
| TTGGATTTGTCTAGGTCTCT+AGG | 0.484229 | 5.3:+64691113 | MS.gene29492:intron |
| GCAGTTGAGGAAGTTGGAAC+TGG | 0.488859 | 5.3:+64691443 | MS.gene29492:CDS |
| AGAGGAAGAAATTATCAGAC+AGG | 0.491022 | 5.3:+64689994 | MS.gene29492:CDS |
| GAACTACTTGCATCTTTAGC+CGG | 0.491484 | 5.3:+64689064 | MS.gene29492:CDS |
| GAGAAACATCTTGAGAGTGC+TGG | 0.500393 | 5.3:+64689193 | MS.gene29492:CDS |
| CGTGAAGGTCTAAAAGCCTT+CGG | 0.501813 | 5.3:-64689541 | None:intergenic |
| TGGTCCAGTGTTCTGATTCA+CGG | 0.506571 | 5.3:-64691354 | None:intergenic |
| AGACACAGAAAATGGTCTCC+TGG | 0.509618 | 5.3:-64691399 | None:intergenic |
| AGCTTGTACAGCGTCGAACC+AGG | 0.512219 | 5.3:+64691381 | MS.gene29492:CDS |
| AACAGAACTCTTCGTCAGAC+TGG | 0.514395 | 5.3:+64690546 | MS.gene29492:CDS |
| CCGCTCAAGTTGGCTAAAGA+AGG | 0.515374 | 5.3:-64689385 | None:intergenic |
| AACAGAAGAGCGATTTCGAA+AGG | 0.516612 | 5.3:+64689147 | MS.gene29492:CDS |
| CAAGAGTGGCCATCCTCGAC+TGG | 0.517246 | 5.3:-64689034 | None:intergenic |
| TTGAAGAAGAGACTTGGTAA+TGG | 0.519239 | 5.3:+64688855 | MS.gene29492:CDS |
| AGAAACATCTTGAGAGTGCT+GGG | 0.523924 | 5.3:+64689194 | MS.gene29492:CDS |
| GAACTCCCTCCATAGATTCA+GGG | 0.526972 | 5.3:+64691135 | MS.gene29492:CDS |
| GAGACTTGGTAATGGATTCA+GGG | 0.529036 | 5.3:+64688863 | MS.gene29492:CDS |
| GATTGTGAACATTCTCGCTA+TGG | 0.532088 | 5.3:+64689640 | MS.gene29492:CDS |
| CACAAGTGGTTGGACAACAT+TGG | 0.539637 | 5.3:-64692379 | None:intergenic |
| TCAAGTCTACATAAGTCCTA+TGG | 0.543438 | 5.3:-64691582 | None:intergenic |
| GGTCCAGTGTTCTGATTCAC+GGG | 0.543575 | 5.3:-64691353 | None:intergenic |
| AATGCCTCAGTACTATGAGC+TGG | 0.546437 | 5.3:-64691320 | None:intergenic |
| AGGTCTAAAAGCCTTCGGTT+TGG | 0.548415 | 5.3:-64689536 | None:intergenic |
| GGGATTTCTGTTGCCAAACA+GGG | 0.550679 | 5.3:+64691155 | MS.gene29492:CDS |
| TTGGACATCTAGGTACCTTA+GGG | 0.553309 | 5.3:-64688896 | None:intergenic |
| AGATAAACTCGGTTTCGTGT+TGG | 0.553459 | 5.3:+64690590 | MS.gene29492:CDS |
| ATGTAGCATCTCAGCCTACC+AGG | 0.553875 | 5.3:+64690667 | MS.gene29492:CDS |
| AGTGTCACACTCTGTTGAAG+AGG | 0.554973 | 5.3:+64689976 | MS.gene29492:CDS |
| TCTACATAATCACAAGTGGT+TGG | 0.557057 | 5.3:-64692389 | None:intergenic |
| TTTAATGTTACCGCTCAAGT+TGG | 0.557954 | 5.3:-64689395 | None:intergenic |
| ACAGAAGAGCGATTTCGAAA+GGG | 0.558663 | 5.3:+64689148 | MS.gene29492:CDS |
| AGCACTTGTTCATGCAGTTG+AGG | 0.558933 | 5.3:+64691430 | MS.gene29492:CDS |
| TTCCAATTCCAAACACTGGA+AGG | 0.567244 | 5.3:+64689600 | MS.gene29492:CDS |
| ACTCTCCTTCAGCAACTCAC+CGG | 0.568548 | 5.3:-64689083 | None:intergenic |
| TGGAACAGAAACTAGCGCTC+CGG | 0.569116 | 5.3:-64691300 | None:intergenic |
| GGTTCGACGCTGTACAAGCT+CGG | 0.569476 | 5.3:-64691378 | None:intergenic |
| TTTAGCCGGTGAGTTGCTGA+AGG | 0.574743 | 5.3:+64689078 | MS.gene29492:CDS |
| CAGGGACTATCAGGTCCCTA+AGG | 0.575068 | 5.3:+64688881 | MS.gene29492:CDS |
| TCAACTTTCGCTCACCTGGT+AGG | 0.576936 | 5.3:-64690681 | None:intergenic |
| ACCGCCAGTATTTGTAAGCA+AGG | 0.577016 | 5.3:-64691183 | None:intergenic |
| TCCCCTAAGAAAGTAATTGG+AGG | 0.577061 | 5.3:+64690068 | MS.gene29492:CDS |
| GCAAAATAATTAGGAAGCGG+TGG | 0.577586 | 5.3:+64689575 | MS.gene29492:CDS |
| CACGCAAAATAATTAGGAAG+CGG | 0.581824 | 5.3:+64689572 | MS.gene29492:CDS |
| GTGATGACTATAATAGGAGG+TGG | 0.582455 | 5.3:+64690477 | MS.gene29492:CDS |
| GGAGAAGCTTGAGAAGAGCT+AGG | 0.582931 | 5.3:-64690615 | None:intergenic |
| CGACGCTGTACAAGCTCGGA+TGG | 0.583494 | 5.3:-64691374 | None:intergenic |
| GTCTTCCTCTTATGACTCGA+GGG | 0.585238 | 5.3:-64689930 | None:intergenic |
| TGCGTCCCTCGAGTCATAAG+AGG | 0.585502 | 5.3:+64689925 | MS.gene29492:CDS |
| TCCTCCAATTACTTTCTTAG+GGG | 0.586162 | 5.3:-64690069 | None:intergenic |
| TGAGATGCTACATGGTGAGA+AGG | 0.589368 | 5.3:-64690657 | None:intergenic |
| TTCAAGAAACCAGTCGAGGA+TGG | 0.590011 | 5.3:+64689025 | MS.gene29492:CDS |
| ATCAGATGCATTGCTAGAGG+TGG | 0.590241 | 5.3:-64689113 | None:intergenic |
| ATCTCTCCTCAACAAAGGAG+AGG | 0.592039 | 5.3:+64692264 | MS.gene29492:CDS |
| CAAAGTTTGCACCAAACCGA+AGG | 0.594191 | 5.3:+64689525 | MS.gene29492:CDS |
| TTCCTCAGGAGCTATTGGAT+AGG | 0.595354 | 5.3:+64692295 | MS.gene29492:CDS |
| TATCAGATATAGTGTCAGCA+AGG | 0.595686 | 5.3:-64691241 | None:intergenic |
| AGTCTTCCTCTTATGACTCG+AGG | 0.596394 | 5.3:-64689931 | None:intergenic |
| TTTATAGAGGACAGTTATGG+AGG | 0.597438 | 5.3:+64690452 | MS.gene29492:intron |
| AGAAATCCCTGAATCTATGG+AGG | 0.598839 | 5.3:-64691141 | None:intergenic |
| AACATCAGATGCATTGCTAG+AGG | 0.601082 | 5.3:-64689116 | None:intergenic |
| CTGAACTGTCAGCCTCGTGA+TGG | 0.601669 | 5.3:-64689333 | None:intergenic |
| GAGGAAGAAATTATCAGACA+GGG | 0.603590 | 5.3:+64689995 | MS.gene29492:CDS |
| AAACAATTCCCCACAAAATG+GGG | 0.608737 | 5.3:-64689419 | None:intergenic |
| GGACTTCCAATTCCAAACAC+TGG | 0.611770 | 5.3:+64689596 | MS.gene29492:CDS |
| ATAGAGGACAGTTATGGAGG+CGG | 0.617071 | 5.3:+64690455 | MS.gene29492:intron |
| TTGAGGAAGTTGGAACTGGA+AGG | 0.620909 | 5.3:+64691447 | MS.gene29492:CDS |
| ACCCTATCCAATAGCTCCTG+AGG | 0.621261 | 5.3:-64692297 | None:intergenic |
| TCGATGCTAACTCATGGTGG+AGG | 0.623580 | 5.3:+64690020 | MS.gene29492:CDS |
| TCTTTCTACATAATCACAAG+TGG | 0.623634 | 5.3:-64692393 | None:intergenic |
| TTGCGTGCAATGTATCGTGA+AGG | 0.623664 | 5.3:-64689556 | None:intergenic |
| TGGTAGGCTGAGATGCTACA+TGG | 0.626444 | 5.3:-64690665 | None:intergenic |
| CCTTCTTTAGCCAACTTGAG+CGG | 0.626589 | 5.3:+64689385 | MS.gene29492:CDS |
| ATGTTGGTGTTCTTGTTAAG+GGG | 0.626831 | 5.3:+64690505 | MS.gene29492:CDS |
| AGGGGTTCGATGCTAACTCA+TGG | 0.630655 | 5.3:+64690014 | MS.gene29492:CDS |
| GTAGTTCAAAAGCACAAGAG+TGG | 0.631884 | 5.3:-64689048 | None:intergenic |
| ATCAGATATAGTGTCAGCAA+GGG | 0.636117 | 5.3:-64691240 | None:intergenic |
| AAAGAAAATATAGATAAACT+CGG | 0.652207 | 5.3:+64690579 | MS.gene29492:CDS |
| TCCTTGCTTACAAATACTGG+CGG | 0.652781 | 5.3:+64691182 | MS.gene29492:CDS |
| GTTCCCGTGAATCAGAACAC+TGG | 0.655650 | 5.3:+64691350 | MS.gene29492:CDS |
| GAAATCCCTGAATCTATGGA+GGG | 0.665973 | 5.3:-64691140 | None:intergenic |
| ATAGGAGGTGGAGTGCATGT+TGG | 0.667170 | 5.3:+64690489 | MS.gene29492:CDS |
| GCGGTGATGACTATAATAGG+AGG | 0.667399 | 5.3:+64690474 | MS.gene29492:CDS |
| TGTTCCAGCTCATAGTACTG+AGG | 0.671950 | 5.3:+64691316 | MS.gene29492:CDS |
| TGCGTTCAAGAAACCAGTCG+AGG | 0.672753 | 5.3:+64689021 | MS.gene29492:CDS |
| ATTCATGGTTCATGTCAACA+AGG | 0.686818 | 5.3:-64691208 | None:intergenic |
| ATGGTGTTGAAGAAGAGACT+TGG | 0.697633 | 5.3:+64688849 | MS.gene29492:CDS |
| AGGAAGAAATTATCAGACAG+GGG | 0.702812 | 5.3:+64689996 | MS.gene29492:CDS |
| GGTTCGATGCTAACTCATGG+TGG | 0.706099 | 5.3:+64690017 | MS.gene29492:CDS |
| GTAATTGGAGGAAATAACCG+TGG | 0.709826 | 5.3:+64690080 | MS.gene29492:CDS |
| GCCAGTATTTGTAAGCAAGG+AGG | 0.726150 | 5.3:-64691180 | None:intergenic |
| AGAAGTTTCAAACCATCACG+AGG | 0.743753 | 5.3:+64689321 | MS.gene29492:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCAGTTAAAAAAAAAAA+AGG | - | chr5.3:64689879-64689898 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAGGAAAAAACT+TGG | - | chr5.3:64689868-64689887 | None:intergenic | 15.0% |
| !! | AAAAAAAAAGGAAAAAACTT+GGG | - | chr5.3:64689867-64689886 | None:intergenic | 15.0% |
| !! | AAAGAAAATATAGATAAACT+CGG | + | chr5.3:64690579-64690598 | MS.gene29492:CDS | 15.0% |
| !! | ATAAGAATTATTCAATTGAA+TGG | - | chr5.3:64691072-64691091 | None:intergenic | 15.0% |
| !!! | ATTGTTTAACTTTTTTATAG+AGG | + | chr5.3:64690439-64690458 | MS.gene29492:intron | 15.0% |
| !! | AAGAATTAAGATATGATAGA+AGG | - | chr5.3:64691616-64691635 | None:intergenic | 20.0% |
| !! | AGAATTAAGATATGATAGAA+GGG | - | chr5.3:64691615-64691634 | None:intergenic | 20.0% |
| !! | ATAGCTTATATTAAAACAGT+TGG | - | chr5.3:64690829-64690848 | None:intergenic | 20.0% |
| !! | GTGAAAGAACAATAAATTTA+AGG | - | chr5.3:64691918-64691937 | None:intergenic | 20.0% |
| !! | TCAAAATAAGGAAAATGTTA+TGG | - | chr5.3:64691959-64691978 | None:intergenic | 20.0% |
| !! | TTTATCATAAATATCAGACT+CGG | + | chr5.3:64692099-64692118 | MS.gene29492:intron | 20.0% |
| !!! | AAATTTTCAAATTGGAGAAT+AGG | + | chr5.3:64689266-64689285 | MS.gene29492:CDS | 20.0% |
| !!! | AATGTGTAATTTGTAGATAA+TGG | + | chr5.3:64689900-64689919 | MS.gene29492:intron | 20.0% |
| !!! | ATTTAGTTTCATCAATAGTT+TGG | + | chr5.3:64690374-64690393 | MS.gene29492:intron | 20.0% |
| !!! | CTTTATCTAATTTTTGCAAT+TGG | + | chr5.3:64691094-64691113 | MS.gene29492:intron | 20.0% |
| !!! | TCTTAGTTTTAAGTTAGATT+TGG | - | chr5.3:64691862-64691881 | None:intergenic | 20.0% |
| ! | AAAATCAATTGCAAGAATTG+CGG | - | chr5.3:64688944-64688963 | None:intergenic | 25.0% |
| ! | AAAATTGTCACCAACTAAAA+GGG | - | chr5.3:64689820-64689839 | None:intergenic | 25.0% |
| ! | ACTTAGTTTATTGCCATTAA+AGG | - | chr5.3:64690995-64691014 | None:intergenic | 25.0% |
| ! | ATCCTGAAGAAATTTGATTA+CGG | + | chr5.3:64691039-64691058 | MS.gene29492:intron | 25.0% |
| ! | TAAAATTGTCACCAACTAAA+AGG | - | chr5.3:64689821-64689840 | None:intergenic | 25.0% |
| ! | TAAATTTAAAGAGAAAGACG+AGG | + | chr5.3:64691666-64691685 | MS.gene29492:intron | 25.0% |
| ! | TTTAATGGCAATAAACTAAG+TGG | + | chr5.3:64690994-64691013 | MS.gene29492:intron | 25.0% |
| !! | ATGATGACGAAAACTTTATT+AGG | + | chr5.3:64689497-64689516 | MS.gene29492:CDS | 25.0% |
| !! | TTAAAGGTATGATGATTGAA+TGG | + | chr5.3:64690301-64690320 | MS.gene29492:intron | 25.0% |
| !!! | ATTTTTTTAAACTATGCAGG+TGG | + | chr5.3:64691524-64691543 | MS.gene29492:intron | 25.0% |
| !!! | GAAGTCTGAAATTTTCAAAT+TGG | + | chr5.3:64689258-64689277 | MS.gene29492:CDS | 25.0% |
| !!! | GACATTTTTTTAAACTATGC+AGG | + | chr5.3:64691521-64691540 | MS.gene29492:intron | 25.0% |
| !!! | GATTTTTACCTGTTTTTGTT+TGG | + | chr5.3:64688958-64688977 | MS.gene29492:intron | 25.0% |
| !!! | GTTGTTTTTATAAGCTATCA+TGG | + | chr5.3:64690851-64690870 | MS.gene29492:intron | 25.0% |
| !!! | TAGAATTATGCAGTTGTTTT+TGG | + | chr5.3:64692043-64692062 | MS.gene29492:intron | 25.0% |
| !!! | TTTTTTATAGAGGACAGTTA+TGG | + | chr5.3:64690449-64690468 | MS.gene29492:intron | 25.0% |
| AACCAAAAGTTCAAGTCATT+AGG | - | chr5.3:64692202-64692221 | None:intergenic | 30.0% | |
| AACCGTAATCAAATTTCTTC+AGG | - | chr5.3:64691044-64691063 | None:intergenic | 30.0% | |
| AATTACTTTCTTAGGGGAAT+TGG | - | chr5.3:64690066-64690085 | None:intergenic | 30.0% | |
| AATTCCCCTAAGAAAGTAAT+TGG | + | chr5.3:64690065-64690084 | MS.gene29492:CDS | 30.0% | |
| ACATTGCACGCAAAATAATT+AGG | + | chr5.3:64689566-64689585 | MS.gene29492:CDS | 30.0% | |
| AGTTTCATCAATAGTTTGGA+GGG | + | chr5.3:64690378-64690397 | MS.gene29492:intron | 30.0% | |
| ATGCAACTACGATCAAAATA+AGG | - | chr5.3:64691971-64691990 | None:intergenic | 30.0% | |
| CACATATATGTCTATGAGTT+AGG | + | chr5.3:64689709-64689728 | MS.gene29492:intron | 30.0% | |
| CTAGTACATGAACTCAAATA+AGG | + | chr5.3:64690956-64690975 | MS.gene29492:intron | 30.0% | |
| GATAAACTAACACAAGATTC+CGG | + | chr5.3:64691281-64691300 | MS.gene29492:CDS | 30.0% | |
| GATCATTATTTGACATGCTT+AGG | + | chr5.3:64691809-64691828 | MS.gene29492:intron | 30.0% | |
| TAGTTTCATCAATAGTTTGG+AGG | + | chr5.3:64690377-64690396 | MS.gene29492:intron | 30.0% | |
| TCTAATGGTAATTTATTGCG+TGG | + | chr5.3:64690134-64690153 | MS.gene29492:intron | 30.0% | |
| TGTTCACAATCTTTCAACTT+TGG | - | chr5.3:64689631-64689650 | None:intergenic | 30.0% | |
| TTACTTACTCTTACAGATCT+TGG | - | chr5.3:64688918-64688937 | None:intergenic | 30.0% | |
| TTCAAATTGGAGAATAGGTT+TGG | + | chr5.3:64689271-64689290 | MS.gene29492:CDS | 30.0% | |
| TTCAGACTTCACATTATTGT+TGG | - | chr5.3:64689248-64689267 | None:intergenic | 30.0% | |
| TTCCTCCAATTACTTTCTTA+GGG | - | chr5.3:64690073-64690092 | None:intergenic | 30.0% | |
| TTTCCTCCAATTACTTTCTT+AGG | - | chr5.3:64690074-64690093 | None:intergenic | 30.0% | |
| ! | AACATTAAATCCCCATTTTG+TGG | + | chr5.3:64689409-64689428 | MS.gene29492:CDS | 30.0% |
| ! | ACATTAAATCCCCATTTTGT+GGG | + | chr5.3:64689410-64689429 | MS.gene29492:CDS | 30.0% |
| ! | TAACACCTATAATGGAAAAG+TGG | + | chr5.3:64691689-64691708 | MS.gene29492:intron | 30.0% |
| ! | TTCCTAATGACTTGAACTTT+TGG | + | chr5.3:64692197-64692216 | MS.gene29492:intron | 30.0% |
| ! | TTGAGTTTGAAATTCTTCAG+AGG | + | chr5.3:64688993-64689012 | MS.gene29492:intron | 30.0% |
| ! | TTTTGCAATTGGATTTGTCT+AGG | + | chr5.3:64691105-64691124 | MS.gene29492:intron | 30.0% |
| !!! | GGACATTTTAGTTTAAGGTT+GGG | + | chr5.3:64691740-64691759 | MS.gene29492:intron | 30.0% |
| !!! | TGATGGGACATTTTAGTTTA+AGG | + | chr5.3:64691735-64691754 | MS.gene29492:intron | 30.0% |
| !!! | TTTACCTGTTTTTGTTTGGA+TGG | + | chr5.3:64688962-64688981 | MS.gene29492:intron | 30.0% |
| AAACAATTCCCCACAAAATG+GGG | - | chr5.3:64689422-64689441 | None:intergenic | 35.0% | |
| AACACCATCCAAACAAAAAC+AGG | - | chr5.3:64688969-64688988 | None:intergenic | 35.0% | |
| AACAGAAATCCCTGAATCTA+TGG | - | chr5.3:64691147-64691166 | None:intergenic | 35.0% | |
| AGAGGAAGAAATTATCAGAC+AGG | + | chr5.3:64689994-64690013 | MS.gene29492:CDS | 35.0% | |
| AGGAAGAAATTATCAGACAG+GGG | + | chr5.3:64689996-64690015 | MS.gene29492:CDS | 35.0% | |
| ATATGTTCTTTGCATCCTAC+TGG | + | chr5.3:64690178-64690197 | MS.gene29492:intron | 35.0% | |
| ATCAGATATAGTGTCAGCAA+GGG | - | chr5.3:64691243-64691262 | None:intergenic | 35.0% | |
| ATTCATGGTTCATGTCAACA+AGG | - | chr5.3:64691211-64691230 | None:intergenic | 35.0% | |
| CAAAAATCTCTCCTCAACAA+AGG | + | chr5.3:64692259-64692278 | MS.gene29492:CDS | 35.0% | |
| CACGCAAAATAATTAGGAAG+CGG | + | chr5.3:64689572-64689591 | MS.gene29492:CDS | 35.0% | |
| CCATTACAACGTATAGCTAA+TGG | - | chr5.3:64692164-64692183 | None:intergenic | 35.0% | |
| CCATTAGCTATACGTTGTAA+TGG | + | chr5.3:64692161-64692180 | MS.gene29492:intron | 35.0% | |
| CTTGTTAAGGGGAAAAAAGT+TGG | + | chr5.3:64690516-64690535 | MS.gene29492:CDS | 35.0% | |
| GAAACAATTCCCCACAAAAT+GGG | - | chr5.3:64689423-64689442 | None:intergenic | 35.0% | |
| GAGGAAGAAATTATCAGACA+GGG | + | chr5.3:64689995-64690014 | MS.gene29492:CDS | 35.0% | |
| GTTTCATCAATAGTTTGGAG+GGG | + | chr5.3:64690379-64690398 | MS.gene29492:intron | 35.0% | |
| TAGGACTTATGTAGACTTGA+AGG | + | chr5.3:64691585-64691604 | MS.gene29492:CDS | 35.0% | |
| TATCAGATATAGTGTCAGCA+AGG | - | chr5.3:64691244-64691263 | None:intergenic | 35.0% | |
| TCAACTTCAGACACAGAAAA+TGG | - | chr5.3:64691410-64691429 | None:intergenic | 35.0% | |
| TCAAGTCTACATAAGTCCTA+TGG | - | chr5.3:64691585-64691604 | None:intergenic | 35.0% | |
| TCCTCCAATTACTTTCTTAG+GGG | - | chr5.3:64690072-64690091 | None:intergenic | 35.0% | |
| TTTAATGTTACCGCTCAAGT+TGG | - | chr5.3:64689398-64689417 | None:intergenic | 35.0% | |
| TTTATAGAGGACAGTTATGG+AGG | + | chr5.3:64690452-64690471 | MS.gene29492:intron | 35.0% | |
| ! | ATGTTGGTGTTCTTGTTAAG+GGG | + | chr5.3:64690505-64690524 | MS.gene29492:CDS | 35.0% |
| ! | ATTCCTTGAAAAGGAAGCAT+TGG | - | chr5.3:64689446-64689465 | None:intergenic | 35.0% |
| ! | CATGTTGGTGTTCTTGTTAA+GGG | + | chr5.3:64690504-64690523 | MS.gene29492:CDS | 35.0% |
| ! | CATTAAATCCCCATTTTGTG+GGG | + | chr5.3:64689411-64689430 | MS.gene29492:CDS | 35.0% |
| ! | GTTTGAAATTCTTCAGAGGA+CGG | + | chr5.3:64688997-64689016 | MS.gene29492:intron | 35.0% |
| ! | TGCAACTGTTGCTTCATTAA+AGG | + | chr5.3:64690285-64690304 | MS.gene29492:CDS | 35.0% |
| ! | TTGAAGAAGAGACTTGGTAA+TGG | + | chr5.3:64688855-64688874 | MS.gene29492:CDS | 35.0% |
| ! | TTTCTTTGCACCCTTTTAGT+TGG | + | chr5.3:64689807-64689826 | MS.gene29492:intron | 35.0% |
| !! | AATGCTTCCTTTTCAAGGAA+TGG | + | chr5.3:64689445-64689464 | MS.gene29492:CDS | 35.0% |
| !! | ATGCTTCCTTTTCAAGGAAT+GGG | + | chr5.3:64689446-64689465 | MS.gene29492:CDS | 35.0% |
| !! | ATTGCCTTTAGAGGTTTTGA+TGG | + | chr5.3:64691718-64691737 | MS.gene29492:intron | 35.0% |
| !! | TCGTACCACTTTTCCATTAT+AGG | - | chr5.3:64691697-64691716 | None:intergenic | 35.0% |
| !! | TTCCTTGAAAAGGAAGCATT+GGG | - | chr5.3:64689445-64689464 | None:intergenic | 35.0% |
| !! | TTGCCTTTAGAGGTTTTGAT+GGG | + | chr5.3:64691719-64691738 | MS.gene29492:intron | 35.0% |
| !!! | GGGACATTTTAGTTTAAGGT+TGG | + | chr5.3:64691739-64691758 | MS.gene29492:intron | 35.0% |
| AACAGAAGAGCGATTTCGAA+AGG | + | chr5.3:64689147-64689166 | MS.gene29492:CDS | 40.0% | |
| AACATCAGATGCATTGCTAG+AGG | - | chr5.3:64689119-64689138 | None:intergenic | 40.0% | |
| ACAGAAGAGCGATTTCGAAA+GGG | + | chr5.3:64689148-64689167 | MS.gene29492:CDS | 40.0% | |
| ACTTTCGCTGCCTAAAAAGA+CGG | - | chr5.3:64691493-64691512 | None:intergenic | 40.0% | |
| AGAAATCCCTGAATCTATGG+AGG | - | chr5.3:64691144-64691163 | None:intergenic | 40.0% | |
| AGAAGTTTCAAACCATCACG+AGG | + | chr5.3:64689321-64689340 | MS.gene29492:CDS | 40.0% | |
| AGACGAGGTAACACCTATAA+TGG | + | chr5.3:64691681-64691700 | MS.gene29492:intron | 40.0% | |
| AGATAAACTCGGTTTCGTGT+TGG | + | chr5.3:64690590-64690609 | MS.gene29492:CDS | 40.0% | |
| ATTCCTCCCATTCCTTGAAA+AGG | - | chr5.3:64689455-64689474 | None:intergenic | 40.0% | |
| ATTGCCATTAAAGGCCTGTT+CGG | - | chr5.3:64690986-64691005 | None:intergenic | 40.0% | |
| CGAAATCGCTCTTCTGTTAA+CGG | - | chr5.3:64689145-64689164 | None:intergenic | 40.0% | |
| CTCTTAGCTTAGACTCTGTT+TGG | + | chr5.3:64690711-64690730 | MS.gene29492:intron | 40.0% | |
| CTTACAGATCTTGGACATCT+AGG | - | chr5.3:64688909-64688928 | None:intergenic | 40.0% | |
| GAAATCCCTGAATCTATGGA+GGG | - | chr5.3:64691143-64691162 | None:intergenic | 40.0% | |
| GAACTACTTGCATCTTTAGC+CGG | + | chr5.3:64689064-64689083 | MS.gene29492:CDS | 40.0% | |
| GACAAATCATCAATGCCAGT+AGG | - | chr5.3:64690196-64690215 | None:intergenic | 40.0% | |
| GATTGTGAACATTCTCGCTA+TGG | + | chr5.3:64689640-64689659 | MS.gene29492:CDS | 40.0% | |
| GCAAAATAATTAGGAAGCGG+TGG | + | chr5.3:64689575-64689594 | MS.gene29492:CDS | 40.0% | |
| GCAATAAACTAAGTGGCTTG+TGG | + | chr5.3:64691001-64691020 | MS.gene29492:intron | 40.0% | |
| GGAAACAATTCCCCACAAAA+TGG | - | chr5.3:64689424-64689443 | None:intergenic | 40.0% | |
| GTAATTGGAGGAAATAACCG+TGG | + | chr5.3:64690080-64690099 | MS.gene29492:CDS | 40.0% | |
| GTGATGACTATAATAGGAGG+TGG | + | chr5.3:64690477-64690496 | MS.gene29492:CDS | 40.0% | |
| TACAACGTATAGCTAATGGC+CGG | - | chr5.3:64692160-64692179 | None:intergenic | 40.0% | |
| TCAAATAAGGCAATCCGAAC+AGG | + | chr5.3:64690969-64690988 | MS.gene29492:intron | 40.0% | |
| TCCCCTAAGAAAGTAATTGG+AGG | + | chr5.3:64690068-64690087 | MS.gene29492:CDS | 40.0% | |
| TCCTCCTTGCTTACAAATAC+TGG | + | chr5.3:64691179-64691198 | MS.gene29492:CDS | 40.0% | |
| TCCTTGCTTACAAATACTGG+CGG | + | chr5.3:64691182-64691201 | MS.gene29492:CDS | 40.0% | |
| TGAACATTCTCGCTATGGTA+AGG | + | chr5.3:64689645-64689664 | MS.gene29492:intron | 40.0% | |
| TGAAGCAACAGTTGCAGTTT+CGG | - | chr5.3:64690281-64690300 | None:intergenic | 40.0% | |
| TGCAAAAGTTCGCGTTTCTA+AGG | + | chr5.3:64690109-64690128 | MS.gene29492:CDS | 40.0% | |
| TGGTACGATATTGCCTTTAG+AGG | + | chr5.3:64691709-64691728 | MS.gene29492:intron | 40.0% | |
| TGTCCCATCAAAACCTCTAA+AGG | - | chr5.3:64691725-64691744 | None:intergenic | 40.0% | |
| TTCCAATTCCAAACACTGGA+AGG | + | chr5.3:64689600-64689619 | MS.gene29492:CDS | 40.0% | |
| TTGGACATCTAGGTACCTTA+GGG | - | chr5.3:64688899-64688918 | None:intergenic | 40.0% | |
| TTGGATTTGTCTAGGTCTCT+AGG | + | chr5.3:64691113-64691132 | MS.gene29492:intron | 40.0% | |
| ! | AACCTTCCAGTGTTTGGAAT+TGG | - | chr5.3:64689605-64689624 | None:intergenic | 40.0% |
| ! | AATATCAGACTCGGTACTTG+CGG | + | chr5.3:64692108-64692127 | MS.gene29492:intron | 40.0% |
| ! | ATCAGCTTCACCGTCTTTTT+AGG | + | chr5.3:64691480-64691499 | MS.gene29492:intron | 40.0% |
| ! | ATGGTGTTGAAGAAGAGACT+TGG | + | chr5.3:64688849-64688868 | MS.gene29492:CDS | 40.0% |
| ! | CGCGTTTCTAAGGATTCTAA+TGG | + | chr5.3:64690119-64690138 | MS.gene29492:CDS | 40.0% |
| ! | GAGTTAGGCTGTTCTTCTTT+TGG | + | chr5.3:64689724-64689743 | MS.gene29492:intron | 40.0% |
| ! | GCATGTTGGTGTTCTTGTTA+AGG | + | chr5.3:64690503-64690522 | MS.gene29492:CDS | 40.0% |
| ! | GTAGTTCAAAAGCACAAGAG+TGG | - | chr5.3:64689051-64689070 | None:intergenic | 40.0% |
| ! | TGGTTTGTGTGCAGGATAAA+TGG | + | chr5.3:64692217-64692236 | MS.gene29492:intron | 40.0% |
| ! | TTCCCAATGCTTCCTTTTCA+AGG | + | chr5.3:64689440-64689459 | MS.gene29492:CDS | 40.0% |
| !! | AACTAAGTGGCTTGTGGTTT+TGG | + | chr5.3:64691007-64691026 | MS.gene29492:intron | 40.0% |
| !! | AGAAACATCTTGAGAGTGCT+GGG | + | chr5.3:64689194-64689213 | MS.gene29492:CDS | 40.0% |
| !! | AGAGACTTGGTAATGGATTC+AGG | + | chr5.3:64688862-64688881 | MS.gene29492:CDS | 40.0% |
| !! | GAGACTTGGTAATGGATTCA+GGG | + | chr5.3:64688863-64688882 | MS.gene29492:CDS | 40.0% |
| !! | GTTGGGTTCACTTTTGTTAC+AGG | + | chr5.3:64691757-64691776 | MS.gene29492:intron | 40.0% |
| !! | TAATGGATTCAGGGACTATC+AGG | + | chr5.3:64688872-64688891 | MS.gene29492:CDS | 40.0% |
| !! | TCTTTTTAGGCAGCGAAAGT+GGG | + | chr5.3:64691493-64691512 | MS.gene29492:intron | 40.0% |
| !! | TGCGTGGAGTTCATTAGTTT+TGG | + | chr5.3:64690150-64690169 | MS.gene29492:intron | 40.0% |
| !! | TTTTGGCTGCACATGCTTAT+TGG | + | chr5.3:64692319-64692338 | MS.gene29492:CDS | 40.0% |
| !!! | GTTTTGAGAATGCAGACCAT+AGG | + | chr5.3:64691566-64691585 | MS.gene29492:CDS | 40.0% |
| !!! | TGAACTTTTGGTTTGTGTGC+AGG | + | chr5.3:64692209-64692228 | MS.gene29492:intron | 40.0% |
| AACAGAACTCTTCGTCAGAC+TGG | + | chr5.3:64690546-64690565 | MS.gene29492:CDS | 45.0% | |
| AACGGTAAGAACAGGACTTG+CGG | - | chr5.3:64689769-64689788 | None:intergenic | 45.0% | |
| AATGCCTCAGTACTATGAGC+TGG | - | chr5.3:64691323-64691342 | None:intergenic | 45.0% | |
| ACCGCCAGTATTTGTAAGCA+AGG | - | chr5.3:64691186-64691205 | None:intergenic | 45.0% | |
| AGAAAAGCTGTCTTGGTGAG+AGG | - | chr5.3:64689792-64689811 | None:intergenic | 45.0% | |
| AGACACAGAAAATGGTCTCC+TGG | - | chr5.3:64691402-64691421 | None:intergenic | 45.0% | |
| AGCACTTGTTCATGCAGTTG+AGG | + | chr5.3:64691430-64691449 | MS.gene29492:CDS | 45.0% | |
| AGGGATTTCTGTTGCCAAAC+AGG | + | chr5.3:64691154-64691173 | MS.gene29492:CDS | 45.0% | |
| AGGTCTAAAAGCCTTCGGTT+TGG | - | chr5.3:64689539-64689558 | None:intergenic | 45.0% | |
| AGTCTTCCTCTTATGACTCG+AGG | - | chr5.3:64689934-64689953 | None:intergenic | 45.0% | |
| AGTGTCACACTCTGTTGAAG+AGG | + | chr5.3:64689976-64689995 | MS.gene29492:CDS | 45.0% | |
| AGTTTCGCATCGAGTCATTC+AGG | + | chr5.3:64690230-64690249 | MS.gene29492:CDS | 45.0% | |
| ATAGAGGACAGTTATGGAGG+CGG | + | chr5.3:64690455-64690474 | MS.gene29492:intron | 45.0% | |
| ATCAGATGCATTGCTAGAGG+TGG | - | chr5.3:64689116-64689135 | None:intergenic | 45.0% | |
| ATCTCTCCTCAACAAAGGAG+AGG | + | chr5.3:64692264-64692283 | MS.gene29492:CDS | 45.0% | |
| CAAAGTTTGCACCAAACCGA+AGG | + | chr5.3:64689525-64689544 | MS.gene29492:CDS | 45.0% | |
| CAATCCGAACAGGCCTTTAA+TGG | + | chr5.3:64690979-64690998 | MS.gene29492:intron | 45.0% | |
| CACAAGTGGTTGGACAACAT+TGG | - | chr5.3:64692382-64692401 | None:intergenic | 45.0% | |
| CCTTCTTTAGCCAACTTGAG+CGG | + | chr5.3:64689385-64689404 | MS.gene29492:CDS | 45.0% | |
| CGTGAAGGTCTAAAAGCCTT+CGG | - | chr5.3:64689544-64689563 | None:intergenic | 45.0% | |
| CTTGGACATCTAGGTACCTT+AGG | - | chr5.3:64688900-64688919 | None:intergenic | 45.0% | |
| GAACTCCCTCCATAGATTCA+GGG | + | chr5.3:64691135-64691154 | MS.gene29492:CDS | 45.0% | |
| GAAGCAACAGTTGCAGTTTC+GGG | - | chr5.3:64690280-64690299 | None:intergenic | 45.0% | |
| GAGGCGGTGATGACTATAAT+AGG | + | chr5.3:64690471-64690490 | MS.gene29492:CDS | 45.0% | |
| GCCAGTATTTGTAAGCAAGG+AGG | - | chr5.3:64691183-64691202 | None:intergenic | 45.0% | |
| GCGAAACTTTACTGTACGCA+AGG | - | chr5.3:64690218-64690237 | None:intergenic | 45.0% | |
| GCGGTGATGACTATAATAGG+AGG | + | chr5.3:64690474-64690493 | MS.gene29492:CDS | 45.0% | |
| GGAACGTCAACGTAAAGTTC+TGG | - | chr5.3:64690259-64690278 | None:intergenic | 45.0% | |
| GGACTTCCAATTCCAAACAC+TGG | + | chr5.3:64689596-64689615 | MS.gene29492:CDS | 45.0% | |
| GGGAGGAATGCTAGTAAGTT+AGG | + | chr5.3:64689466-64689485 | MS.gene29492:CDS | 45.0% | |
| GGGATTTCTGTTGCCAAACA+GGG | + | chr5.3:64691155-64691174 | MS.gene29492:CDS | 45.0% | |
| GGTGCAAAGAAAAGCTGTCT+TGG | - | chr5.3:64689799-64689818 | None:intergenic | 45.0% | |
| GTCTTCCTCTTATGACTCGA+GGG | - | chr5.3:64689933-64689952 | None:intergenic | 45.0% | |
| GTTCATGCAGTTGAGGAAGT+TGG | + | chr5.3:64691437-64691456 | MS.gene29492:CDS | 45.0% | |
| TCCTCAGGAGCTATTGGATA+GGG | + | chr5.3:64692296-64692315 | MS.gene29492:CDS | 45.0% | |
| TGAGATGCTACATGGTGAGA+AGG | - | chr5.3:64690660-64690679 | None:intergenic | 45.0% | |
| TGGTCCAGTGTTCTGATTCA+CGG | - | chr5.3:64691357-64691376 | None:intergenic | 45.0% | |
| TGTTCCAGCTCATAGTACTG+AGG | + | chr5.3:64691316-64691335 | MS.gene29492:CDS | 45.0% | |
| TTCAAGAAACCAGTCGAGGA+TGG | + | chr5.3:64689025-64689044 | MS.gene29492:CDS | 45.0% | |
| TTCCTCAGGAGCTATTGGAT+AGG | + | chr5.3:64692295-64692314 | MS.gene29492:CDS | 45.0% | |
| TTGAGGAAGTTGGAACTGGA+AGG | + | chr5.3:64691447-64691466 | MS.gene29492:CDS | 45.0% | |
| TTGATGCTTGACATGCTGCT+TGG | - | chr5.3:64692358-64692377 | None:intergenic | 45.0% | |
| TTGCGTGCAATGTATCGTGA+AGG | - | chr5.3:64689559-64689578 | None:intergenic | 45.0% | |
| ! | CAAGGGAAGAAGCTGATTCA+TGG | - | chr5.3:64691226-64691245 | None:intergenic | 45.0% |
| ! | GAACTTTTGCAGATGAGCCA+CGG | - | chr5.3:64690100-64690119 | None:intergenic | 45.0% |
| ! | GAGAAACATCTTGAGAGTGC+TGG | + | chr5.3:64689193-64689212 | MS.gene29492:CDS | 45.0% |
| ! | GGAGCTATTGGATAGGGTTT+TGG | + | chr5.3:64692302-64692321 | MS.gene29492:CDS | 45.0% |
| !! | CTTCCTTTTCAAGGAATGGG+AGG | + | chr5.3:64689449-64689468 | MS.gene29492:CDS | 45.0% |
| !! | GTCTTTTTAGGCAGCGAAAG+TGG | + | chr5.3:64691492-64691511 | MS.gene29492:intron | 45.0% |
| !! | GTTGGAACTGGAAGGTACTA+TGG | + | chr5.3:64691455-64691474 | MS.gene29492:intron | 45.0% |
| AAGCAAGGAGGAACCCTGTT+TGG | - | chr5.3:64691171-64691190 | None:intergenic | 50.0% | |
| ACCCTATCCAATAGCTCCTG+AGG | - | chr5.3:64692300-64692319 | None:intergenic | 50.0% | |
| ACTCTCCTTCAGCAACTCAC+CGG | - | chr5.3:64689086-64689105 | None:intergenic | 50.0% | |
| AGCTGTCTTGGTGAGAGGAA+CGG | - | chr5.3:64689787-64689806 | None:intergenic | 50.0% | |
| AGGGGTTCGATGCTAACTCA+TGG | + | chr5.3:64690014-64690033 | MS.gene29492:CDS | 50.0% | |
| ATAGGAGGTGGAGTGCATGT+TGG | + | chr5.3:64690489-64690508 | MS.gene29492:CDS | 50.0% | |
| ATGTAGCATCTCAGCCTACC+AGG | + | chr5.3:64690667-64690686 | MS.gene29492:CDS | 50.0% | |
| CTGTTCAACTTTCGCTCACC+TGG | - | chr5.3:64690688-64690707 | None:intergenic | 50.0% | |
| GCAGTTGAGGAAGTTGGAAC+TGG | + | chr5.3:64691443-64691462 | MS.gene29492:CDS | 50.0% | |
| GCTTCTCCAGTTGTTTGTGC+TGG | + | chr5.3:64690630-64690649 | MS.gene29492:CDS | 50.0% | |
| GGAACTCCCTCCATAGATTC+AGG | + | chr5.3:64691134-64691153 | MS.gene29492:CDS | 50.0% | |
| GGAGAAGCTTGAGAAGAGCT+AGG | - | chr5.3:64690618-64690637 | None:intergenic | 50.0% | |
| GGATCACCAGCACAAACAAC+TGG | - | chr5.3:64690639-64690658 | None:intergenic | 50.0% | |
| GGTCCAGTGTTCTGATTCAC+GGG | - | chr5.3:64691356-64691375 | None:intergenic | 50.0% | |
| GGTTCGATGCTAACTCATGG+TGG | + | chr5.3:64690017-64690036 | MS.gene29492:CDS | 50.0% | |
| GTGAGAGGAACGGTAAGAAC+AGG | - | chr5.3:64689777-64689796 | None:intergenic | 50.0% | |
| GTTCCCGTGAATCAGAACAC+TGG | + | chr5.3:64691350-64691369 | MS.gene29492:CDS | 50.0% | |
| TCAACTTTCGCTCACCTGGT+AGG | - | chr5.3:64690684-64690703 | None:intergenic | 50.0% | |
| TCCAATAGCTCCTGAGGAAC+TGG | - | chr5.3:64692294-64692313 | None:intergenic | 50.0% | |
| TCGATGCTAACTCATGGTGG+AGG | + | chr5.3:64690020-64690039 | MS.gene29492:CDS | 50.0% | |
| TGCGTTCAAGAAACCAGTCG+AGG | + | chr5.3:64689021-64689040 | MS.gene29492:CDS | 50.0% | |
| TGGAACAGAAACTAGCGCTC+CGG | - | chr5.3:64691303-64691322 | None:intergenic | 50.0% | |
| TGGAGCAACCTTCCAGTGTT+TGG | - | chr5.3:64689611-64689630 | None:intergenic | 50.0% | |
| TGGTAGGCTGAGATGCTACA+TGG | - | chr5.3:64690668-64690687 | None:intergenic | 50.0% | |
| TTTAGCCGGTGAGTTGCTGA+AGG | + | chr5.3:64689078-64689097 | MS.gene29492:CDS | 50.0% | |
| ! | GCTTGACATGCTGCTTGGAT+TGG | - | chr5.3:64692353-64692372 | None:intergenic | 50.0% |
| ! | TGACATGCTGCTTGGATTGG+TGG | - | chr5.3:64692350-64692369 | None:intergenic | 50.0% |
| !! | CCGCTCAAGTTGGCTAAAGA+AGG | - | chr5.3:64689388-64689407 | None:intergenic | 50.0% |
| ATAGCTAATGGCCGGTGTGC+AGG | - | chr5.3:64692152-64692171 | None:intergenic | 55.0% | |
| CAGGGACTATCAGGTCCCTA+AGG | + | chr5.3:64688881-64688900 | MS.gene29492:CDS | 55.0% | |
| CATCACGAGGCTGACAGTTC+AGG | + | chr5.3:64689334-64689353 | MS.gene29492:CDS | 55.0% | |
| CATTCACACACCCTGCACAC+CGG | + | chr5.3:64692138-64692157 | MS.gene29492:intron | 55.0% | |
| CTGAACTGTCAGCCTCGTGA+TGG | - | chr5.3:64689336-64689355 | None:intergenic | 55.0% | |
| GCCAGTTCCTCAGGAGCTAT+TGG | + | chr5.3:64692290-64692309 | MS.gene29492:CDS | 55.0% | |
| GGCTGTCCTCTCCTTTGTTG+AGG | - | chr5.3:64692273-64692292 | None:intergenic | 55.0% | |
| GGTTCGACGCTGTACAAGCT+CGG | - | chr5.3:64691381-64691400 | None:intergenic | 55.0% | |
| TAGCTAATGGCCGGTGTGCA+GGG | - | chr5.3:64692151-64692170 | None:intergenic | 55.0% | |
| TGCGTCCCTCGAGTCATAAG+AGG | + | chr5.3:64689925-64689944 | MS.gene29492:CDS | 55.0% | |
| ! | AGCTTGTACAGCGTCGAACC+AGG | + | chr5.3:64691381-64691400 | MS.gene29492:CDS | 55.0% |
| CAAGAGTGGCCATCCTCGAC+TGG | - | chr5.3:64689037-64689056 | None:intergenic | 60.0% | |
| CGACGCTGTACAAGCTCGGA+TGG | - | chr5.3:64691377-64691396 | None:intergenic | 60.0% | |
| GAGAGGACAGCCAGTTCCTC+AGG | + | chr5.3:64692281-64692300 | MS.gene29492:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 64688849 | 64692410 | 64688849 | ID=MS.gene29492 |
| chr5.3 | mRNA | 64688849 | 64692410 | 64688849 | ID=MS.gene29492.t1;Parent=MS.gene29492 |
| chr5.3 | exon | 64688849 | 64688929 | 64688849 | ID=MS.gene29492.t1.exon1;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64688849 | 64688929 | 64688849 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64689013 | 64689661 | 64689013 | ID=MS.gene29492.t1.exon2;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64689013 | 64689661 | 64689013 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64689916 | 64690140 | 64689916 | ID=MS.gene29492.t1.exon3;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64689916 | 64690140 | 64689916 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64690227 | 64690306 | 64690227 | ID=MS.gene29492.t1.exon4;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64690227 | 64690306 | 64690227 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64690459 | 64690688 | 64690459 | ID=MS.gene29492.t1.exon5;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64690459 | 64690688 | 64690459 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64691127 | 64691468 | 64691127 | ID=MS.gene29492.t1.exon6;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64691127 | 64691468 | 64691127 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64691543 | 64691606 | 64691543 | ID=MS.gene29492.t1.exon7;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64691543 | 64691606 | 64691543 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| chr5.3 | exon | 64692231 | 64692410 | 64692231 | ID=MS.gene29492.t1.exon8;Parent=MS.gene29492.t1 |
| chr5.3 | CDS | 64692231 | 64692410 | 64692231 | ID=cds.MS.gene29492.t1;Parent=MS.gene29492.t1 |
| Gene Sequence |
| Protein sequence |
