Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30877.t1 | XP_013468284.1 | 96.4 | 140 | 4 | 1 | 1 | 139 | 1 | 140 | 1.30E-72 | 282.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30877.t1 | A0A072VL41 | 96.4 | 140 | 4 | 1 | 1 | 139 | 1 | 140 | 9.0e-73 | 282.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049284 | MS.gene30877 | 0.81695 | 4.25E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene30877 | 0.827012 | 1.98E-54 | -1.69E-46 |
| MS.gene049491 | MS.gene30877 | 0.833422 | 5.38E-56 | -1.69E-46 |
| MS.gene049614 | MS.gene30877 | 0.834803 | 2.43E-56 | -1.69E-46 |
| MS.gene049661 | MS.gene30877 | 0.807227 | 5.60E-50 | -1.69E-46 |
| MS.gene049662 | MS.gene30877 | 0.806468 | 8.11E-50 | -1.69E-46 |
| MS.gene049758 | MS.gene30877 | 0.804538 | 2.06E-49 | -1.69E-46 |
| MS.gene050076 | MS.gene30877 | 0.851786 | 7.07E-61 | -1.69E-46 |
| MS.gene050099 | MS.gene30877 | 0.812485 | 4.14E-51 | -1.69E-46 |
| MS.gene050128 | MS.gene30877 | 0.815862 | 7.44E-52 | -1.69E-46 |
| MS.gene050301 | MS.gene30877 | 0.827147 | 1.84E-54 | -1.69E-46 |
| MS.gene050397 | MS.gene30877 | 0.825975 | 3.50E-54 | -1.69E-46 |
| MS.gene050404 | MS.gene30877 | 0.810886 | 9.22E-51 | -1.69E-46 |
| MS.gene050432 | MS.gene30877 | 0.835548 | 1.57E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene30877 | 0.822257 | 2.61E-53 | -1.69E-46 |
| MS.gene050767 | MS.gene30877 | 0.874526 | 6.30E-68 | -1.69E-46 |
| MS.gene050770 | MS.gene30877 | 0.875566 | 2.79E-68 | -1.69E-46 |
| MS.gene050812 | MS.gene30877 | 0.814639 | 1.39E-51 | -1.69E-46 |
| MS.gene05101 | MS.gene30877 | 0.842851 | 2.01E-58 | -1.69E-46 |
| MS.gene051228 | MS.gene30877 | 0.83643 | 9.40E-57 | -1.69E-46 |
| MS.gene051471 | MS.gene30877 | 0.864163 | 1.48E-64 | -1.69E-46 |
| MS.gene052078 | MS.gene30877 | 0.856034 | 4.22E-62 | -1.69E-46 |
| MS.gene052178 | MS.gene30877 | 0.845334 | 4.33E-59 | -1.69E-46 |
| MS.gene052188 | MS.gene30877 | 0.80581 | 1.11E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene30877 | 0.804608 | 1.99E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene30877 | 0.853424 | 2.41E-61 | -1.69E-46 |
| MS.gene052310 | MS.gene30877 | 0.851794 | 7.04E-61 | -1.69E-46 |
| MS.gene052326 | MS.gene30877 | 0.856765 | 2.58E-62 | -1.69E-46 |
| MS.gene052340 | MS.gene30877 | 0.815528 | 8.83E-52 | -1.69E-46 |
| MS.gene052379 | MS.gene30877 | 0.815347 | 9.69E-52 | -1.69E-46 |
| MS.gene053103 | MS.gene30877 | 0.815575 | 8.62E-52 | -1.69E-46 |
| MS.gene053104 | MS.gene30877 | 0.822712 | 2.05E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene30877 | 0.822443 | 2.36E-53 | -1.69E-46 |
| MS.gene053322 | MS.gene30877 | 0.841766 | 3.89E-58 | -1.69E-46 |
| MS.gene053384 | MS.gene30877 | 0.838262 | 3.19E-57 | -1.69E-46 |
| MS.gene053557 | MS.gene30877 | 0.84701 | 1.52E-59 | -1.69E-46 |
| MS.gene054123 | MS.gene30877 | 0.818075 | 2.37E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene30877 | 0.861935 | 7.23E-64 | -1.69E-46 |
| MS.gene05455 | MS.gene30877 | 0.810397 | 1.18E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene30877 | 0.839276 | 1.75E-57 | -1.69E-46 |
| MS.gene054803 | MS.gene30877 | 0.839613 | 1.43E-57 | -1.69E-46 |
| MS.gene054804 | MS.gene30877 | 0.841565 | 4.40E-58 | -1.69E-46 |
| MS.gene054955 | MS.gene30877 | 0.801856 | 7.39E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene30877 | 0.867621 | 1.20E-65 | -1.69E-46 |
| MS.gene055277 | MS.gene30877 | 0.86019 | 2.45E-63 | -1.69E-46 |
| MS.gene055390 | MS.gene30877 | 0.828629 | 8.09E-55 | -1.69E-46 |
| MS.gene055397 | MS.gene30877 | 0.847759 | 9.43E-60 | -1.69E-46 |
| MS.gene055422 | MS.gene30877 | 0.840066 | 1.09E-57 | -1.69E-46 |
| MS.gene055428 | MS.gene30877 | 0.818163 | 2.26E-52 | -1.69E-46 |
| MS.gene055497 | MS.gene30877 | -0.803881 | 2.82E-49 | -1.69E-46 |
| MS.gene055499 | MS.gene30877 | 0.833366 | 5.56E-56 | -1.69E-46 |
| MS.gene055896 | MS.gene30877 | 0.859616 | 3.66E-63 | -1.69E-46 |
| MS.gene05592 | MS.gene30877 | 0.82095 | 5.23E-53 | -1.69E-46 |
| MS.gene055930 | MS.gene30877 | 0.80138 | 9.25E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene30877 | 0.830969 | 2.18E-55 | -1.69E-46 |
| MS.gene056609 | MS.gene30877 | 0.87064 | 1.25E-66 | -1.69E-46 |
| MS.gene056612 | MS.gene30877 | 0.815313 | 9.86E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene30877 | 0.819132 | 1.36E-52 | -1.69E-46 |
| MS.gene056897 | MS.gene30877 | 0.805425 | 1.34E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene30877 | 0.802196 | 6.29E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene30877 | 0.851984 | 6.22E-61 | -1.69E-46 |
| MS.gene057295 | MS.gene30877 | 0.843824 | 1.10E-58 | -1.69E-46 |
| MS.gene05733 | MS.gene30877 | 0.812019 | 5.23E-51 | -1.69E-46 |
| MS.gene058082 | MS.gene30877 | 0.827774 | 1.30E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene30877 | 0.818982 | 1.47E-52 | -1.69E-46 |
| MS.gene058233 | MS.gene30877 | 0.812587 | 3.93E-51 | -1.69E-46 |
| MS.gene058293 | MS.gene30877 | 0.861045 | 1.35E-63 | -1.69E-46 |
| MS.gene058365 | MS.gene30877 | 0.81514 | 1.08E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene30877 | 0.85984 | 3.13E-63 | -1.69E-46 |
| MS.gene05907 | MS.gene30877 | 0.813715 | 2.23E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene30877 | 0.841023 | 6.11E-58 | -1.69E-46 |
| MS.gene059342 | MS.gene30877 | 0.814224 | 1.72E-51 | -1.69E-46 |
| MS.gene059518 | MS.gene30877 | 0.816023 | 6.85E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene30877 | 0.820566 | 6.41E-53 | -1.69E-46 |
| MS.gene059597 | MS.gene30877 | 0.834028 | 3.80E-56 | -1.69E-46 |
| MS.gene05959 | MS.gene30877 | 0.814778 | 1.30E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene30877 | 0.83743 | 5.22E-57 | -1.69E-46 |
| MS.gene059688 | MS.gene30877 | 0.809761 | 1.61E-50 | -1.69E-46 |
| MS.gene059692 | MS.gene30877 | 0.840937 | 6.43E-58 | -1.69E-46 |
| MS.gene059695 | MS.gene30877 | 0.838556 | 2.68E-57 | -1.69E-46 |
| MS.gene059708 | MS.gene30877 | 0.853591 | 2.16E-61 | -1.69E-46 |
| MS.gene059858 | MS.gene30877 | 0.830072 | 3.61E-55 | -1.69E-46 |
| MS.gene059894 | MS.gene30877 | 0.860656 | 1.77E-63 | -1.69E-46 |
| MS.gene059960 | MS.gene30877 | 0.869384 | 3.22E-66 | -1.69E-46 |
| MS.gene059974 | MS.gene30877 | 0.808236 | 3.42E-50 | -1.69E-46 |
| MS.gene060005 | MS.gene30877 | 0.834515 | 2.87E-56 | -1.69E-46 |
| MS.gene06037 | MS.gene30877 | 0.818527 | 1.87E-52 | -1.69E-46 |
| MS.gene060804 | MS.gene30877 | 0.838567 | 2.66E-57 | -1.69E-46 |
| MS.gene060818 | MS.gene30877 | 0.82753 | 1.49E-54 | -1.69E-46 |
| MS.gene061041 | MS.gene30877 | 0.825709 | 4.04E-54 | -1.69E-46 |
| MS.gene061049 | MS.gene30877 | 0.823033 | 1.72E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene30877 | -0.839594 | 1.44E-57 | -1.69E-46 |
| MS.gene061200 | MS.gene30877 | 0.852517 | 4.38E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30877.t1 | MTR_1g067330 | 96.429 | 140 | 4 | 1 | 1 | 139 | 1 | 140 | 3.25e-98 | 281 |
| MS.gene30877.t1 | MTR_0016s0020 | 95.714 | 140 | 6 | 0 | 1 | 140 | 4 | 143 | 1.53e-88 | 257 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30877.t1 | AT5G02710 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 7.47e-50 | 159 |
| MS.gene30877.t1 | AT5G02710 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 7.47e-50 | 159 |
| MS.gene30877.t1 | AT5G02710 | 54.015 | 137 | 56 | 3 | 9 | 138 | 7 | 143 | 7.47e-50 | 159 |
Find 42 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGCTCTACAATAGCTTAAT+AGG | 0.218970 | 1.2:-50618250 | MS.gene30877:CDS |
| TGGGCACTGACCAGAGTAAA+TGG | 0.329466 | 1.2:+50618180 | None:intergenic |
| GCTTGTTGTAAGCTTCAAAA+AGG | 0.360348 | 1.2:-50618461 | MS.gene30877:CDS |
| TAAACAGAAGAATTTCAATA+AGG | 0.371896 | 1.2:-50618007 | MS.gene30877:CDS |
| GAGGTGTTTGAATCTTTGTT+TGG | 0.380094 | 1.2:-50618033 | MS.gene30877:CDS |
| GTTGAACTCTTTATTGATCA+AGG | 0.393841 | 1.2:-50616941 | MS.gene30877:intron |
| ACCATTCATTTAGTTTGTAC+AGG | 0.397277 | 1.2:+50615920 | None:intergenic |
| CTAATTTCATTATTCTACTC+AGG | 0.416442 | 1.2:-50615966 | MS.gene30877:CDS |
| GGTGCTGCCGCCATTATCAT+TGG | 0.449696 | 1.2:-50618612 | MS.gene30877:CDS |
| GAACATGTGACCAATGATAA+TGG | 0.463503 | 1.2:+50618602 | None:intergenic |
| TGGCATTGCGTGCAAGGTTG+TGG | 0.476021 | 1.2:-50618485 | MS.gene30877:CDS |
| TCTTCAGGAGATGGATAAGA+AGG | 0.485774 | 1.2:+50618437 | None:intergenic |
| TTCATTATTCTACTCAGGGT+TGG | 0.493171 | 1.2:-50615961 | MS.gene30877:CDS |
| TAATGTATACACCATCCATC+TGG | 0.496715 | 1.2:+50618226 | None:intergenic |
| TTGTCGTGGCATTGCGTGCA+AGG | 0.513920 | 1.2:-50618491 | MS.gene30877:CDS |
| TACCGATCCTTCAGATGTTG+AGG | 0.516912 | 1.2:-50618408 | MS.gene30877:intron |
| AGGTTTCAGCGGCGAGAAGA+AGG | 0.522187 | 1.2:-50618516 | MS.gene30877:CDS |
| AGAAAATGTTCCATTTACTC+TGG | 0.525786 | 1.2:-50618190 | MS.gene30877:intron |
| AAACAAAGGCAAAACAATGC+AGG | 0.531021 | 1.2:-50618536 | MS.gene30877:CDS |
| TAATTTCATTATTCTACTCA+GGG | 0.539412 | 1.2:-50615965 | MS.gene30877:CDS |
| ACAGAAGAATTTCAATAAGG+AGG | 0.546703 | 1.2:-50618004 | MS.gene30877:CDS |
| ATTTCAATAAGGAGGCATGC+AGG | 0.546848 | 1.2:-50617996 | MS.gene30877:intron |
| CGGCAGCACCAGAGTGGTGG+TGG | 0.548071 | 1.2:+50618625 | None:intergenic |
| ATCTCTCACCACCACCACTC+TGG | 0.552535 | 1.2:-50618633 | MS.gene30877:CDS |
| CCATTCATTTAGTTTGTACA+GGG | 0.559470 | 1.2:+50615921 | None:intergenic |
| AAATGGACCTCAACATCTGA+AGG | 0.562258 | 1.2:+50618401 | None:intergenic |
| CCCTGTACAAACTAAATGAA+TGG | 0.563534 | 1.2:-50615921 | MS.gene30877:CDS |
| AACAAAGATTCAAACACCTC+AGG | 0.567275 | 1.2:+50618036 | None:intergenic |
| GACCTCAACATCTGAAGGAT+CGG | 0.570801 | 1.2:+50618406 | None:intergenic |
| AATAGCTTAATAGGACCAGA+TGG | 0.583134 | 1.2:-50618241 | MS.gene30877:CDS |
| CAAAACAATGCAGGTTTCAG+CGG | 0.589943 | 1.2:-50618527 | MS.gene30877:CDS |
| ATCATTGGTCACATGTTCAG+CGG | 0.607004 | 1.2:-50618597 | MS.gene30877:CDS |
| TGGCGGCAGCACCAGAGTGG+TGG | 0.610038 | 1.2:+50618622 | None:intergenic |
| GCTTAATAGGACCAGATGGA+TGG | 0.610306 | 1.2:-50618237 | MS.gene30877:CDS |
| GCGTCGTCCACATACAACTA+CGG | 0.631589 | 1.2:-50618573 | MS.gene30877:CDS |
| CAAACACCTCAGGCTCCGCA+CGG | 0.675793 | 1.2:+50618046 | None:intergenic |
| GCGAGAAGAAGGAATTGTCG+TGG | 0.678840 | 1.2:-50618505 | MS.gene30877:CDS |
| TAATGGCGGCAGCACCAGAG+TGG | 0.694878 | 1.2:+50618619 | None:intergenic |
| TCAAAACTGACAGAAAACAA+AGG | 0.696654 | 1.2:-50618550 | MS.gene30877:CDS |
| ACTCTTCATTAGAATACACG+AGG | 0.700616 | 1.2:+50615895 | None:intergenic |
| CTCTTCATTAGAATACACGA+GGG | 0.731354 | 1.2:+50615896 | None:intergenic |
| CATGTGACCAATGATAATGG+CGG | 0.801428 | 1.2:+50618605 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAGCTATATTTGAT+AGG | - | chr1.2:50617755-50617774 | MS.gene30877:intron | 15.0% |
| !! | AATAAAAACATAGAAAACAT+AGG | + | chr1.2:50616167-50616186 | None:intergenic | 15.0% |
| !! | TAAATGAAAGATAATTACTT+TGG | - | chr1.2:50616672-50616691 | MS.gene30877:intron | 15.0% |
| !! | TTAACAAATTTCTTAAGAAA+TGG | - | chr1.2:50617210-50617229 | MS.gene30877:intron | 15.0% |
| !!! | CATTAAGTTTTTGTTTTTTT+GGG | + | chr1.2:50617911-50617930 | None:intergenic | 15.0% |
| !!! | TCATTAAGTTTTTGTTTTTT+TGG | + | chr1.2:50617912-50617931 | None:intergenic | 15.0% |
| !!! | TTTTATGTATTTCATGAAAT+TGG | - | chr1.2:50616829-50616848 | MS.gene30877:intron | 15.0% |
| !! | ATGAAATACATAAAAGTCAA+AGG | + | chr1.2:50616824-50616843 | None:intergenic | 20.0% |
| !! | TAAACAGAAGAATTTCAATA+AGG | - | chr1.2:50616534-50616553 | MS.gene30877:intron | 20.0% |
| !! | TAATTTCATTATTCTACTCA+GGG | - | chr1.2:50618576-50618595 | MS.gene30877:CDS | 20.0% |
| !! | TATTGTTAAAATAAGTGCTA+TGG | - | chr1.2:50617958-50617977 | MS.gene30877:intron | 20.0% |
| !! | TGAATGTTATGATTTCTTAT+GGG | - | chr1.2:50616408-50616427 | MS.gene30877:intron | 20.0% |
| !! | TTATTTATGCTTTGATTATG+TGG | - | chr1.2:50616253-50616272 | MS.gene30877:intron | 20.0% |
| !! | TTGAATGTTATGATTTCTTA+TGG | - | chr1.2:50616407-50616426 | MS.gene30877:intron | 20.0% |
| !!! | ATTTCTTTTACTTTCGTTTA+TGG | - | chr1.2:50616597-50616616 | MS.gene30877:intron | 20.0% |
| !!! | GAGTTTTAAAGAAAAAACAT+AGG | + | chr1.2:50616725-50616744 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTTACCATAATGT+TGG | - | chr1.2:50617637-50617656 | MS.gene30877:intron | 20.0% |
| ! | AATTTATGGTTCCAATTCAA+AGG | - | chr1.2:50617527-50617546 | MS.gene30877:intron | 25.0% |
| ! | ACATAGAAAACATAGGAAAA+TGG | + | chr1.2:50616160-50616179 | None:intergenic | 25.0% |
| ! | AGGGAAAAAAACAAAGAAAT+TGG | + | chr1.2:50617478-50617497 | None:intergenic | 25.0% |
| ! | ATAAATTCCAATAGAAGAAC+AGG | + | chr1.2:50617808-50617827 | None:intergenic | 25.0% |
| ! | ATGAAAGATAATTACTTTGG+TGG | - | chr1.2:50616675-50616694 | MS.gene30877:intron | 25.0% |
| ! | ATTATGAAGTTCCTTTGAAT+TGG | + | chr1.2:50617541-50617560 | None:intergenic | 25.0% |
| ! | CTAATTTCATTATTCTACTC+AGG | - | chr1.2:50618575-50618594 | MS.gene30877:CDS | 25.0% |
| ! | CTTCGAAAAATATTGATACA+TGG | - | chr1.2:50618136-50618155 | MS.gene30877:intron | 25.0% |
| ! | CTTGGAAATGTAATATTAGA+TGG | - | chr1.2:50618510-50618529 | MS.gene30877:CDS | 25.0% |
| ! | TCATGAAATTGGAACAATTT+CGG | - | chr1.2:50616840-50616859 | MS.gene30877:intron | 25.0% |
| ! | TCTTTACTTCAATTTGCATT+CGG | - | chr1.2:50616915-50616934 | MS.gene30877:intron | 25.0% |
| !! | AACTATCTAAAGTTCTATCA+AGG | + | chr1.2:50618008-50618027 | None:intergenic | 25.0% |
| !! | ATCTAATTTGGAATGGAAAT+TGG | + | chr1.2:50618369-50618388 | None:intergenic | 25.0% |
| !! | ATTTGAAGCAGCATTTAAAT+AGG | - | chr1.2:50616870-50616889 | MS.gene30877:intron | 25.0% |
| !! | TAGTATTTGTCTTTTTACAC+TGG | - | chr1.2:50616221-50616240 | MS.gene30877:intron | 25.0% |
| !! | TGAAATTAGCCTATTCAAAT+CGG | + | chr1.2:50618564-50618583 | None:intergenic | 25.0% |
| !! | TTTGAAGCAGCATTTAAATA+GGG | - | chr1.2:50616871-50616890 | MS.gene30877:intron | 25.0% |
| !!! | AATCATTCTTTGTTGTTGTA+AGG | + | chr1.2:50617298-50617317 | None:intergenic | 25.0% |
| !!! | AGATTTCCCATATCTTATTT+TGG | - | chr1.2:50617852-50617871 | MS.gene30877:intron | 25.0% |
| !!! | ATAATTTTGACGAGTCAATT+AGG | - | chr1.2:50617556-50617575 | MS.gene30877:intron | 25.0% |
| !!! | GATTTCCCATATCTTATTTT+GGG | - | chr1.2:50617853-50617872 | MS.gene30877:intron | 25.0% |
| !!! | TTTCTTTAAAACTCGATATC+TGG | - | chr1.2:50616731-50616750 | MS.gene30877:intron | 25.0% |
| AAAGGAATGACTTCTATTAG+TGG | + | chr1.2:50618188-50618207 | None:intergenic | 30.0% | |
| AAATTAGATATCGTTGCTGT+GGG | - | chr1.2:50618380-50618399 | MS.gene30877:intron | 30.0% | |
| ACAGAAGAATTTCAATAAGG+AGG | - | chr1.2:50616537-50616556 | MS.gene30877:intron | 30.0% | |
| ACTTAGCCCAAAATAAGATA+TGG | + | chr1.2:50617862-50617881 | None:intergenic | 30.0% | |
| AGAAAATGTTCCATTTACTC+TGG | - | chr1.2:50616351-50616370 | MS.gene30877:intron | 30.0% | |
| ATGTAATACTGATATGCTAG+TGG | - | chr1.2:50616699-50616718 | MS.gene30877:intron | 30.0% | |
| ATTTGAAAAGTGAGTGAGAA+AGG | + | chr1.2:50616575-50616594 | None:intergenic | 30.0% | |
| CAACGATATCTAATTTGGAA+TGG | + | chr1.2:50618376-50618395 | None:intergenic | 30.0% | |
| CATGAAATTGGAACAATTTC+GGG | - | chr1.2:50616841-50616860 | MS.gene30877:intron | 30.0% | |
| CTTAGCCCAAAATAAGATAT+GGG | + | chr1.2:50617861-50617880 | None:intergenic | 30.0% | |
| GAAAACTCTAACCAACATTA+TGG | + | chr1.2:50617651-50617670 | None:intergenic | 30.0% | |
| GAATGCAAATTGAAGTAAAG+AGG | + | chr1.2:50616916-50616935 | None:intergenic | 30.0% | |
| GACTCAATTAAGGCAATTTA+TGG | - | chr1.2:50617513-50617532 | MS.gene30877:intron | 30.0% | |
| GTAAAAATTTCTTCAGGAGA+TGG | + | chr1.2:50616116-50616135 | None:intergenic | 30.0% | |
| GTTGAACTCTTTATTGATCA+AGG | - | chr1.2:50617600-50617619 | MS.gene30877:intron | 30.0% | |
| TATACTAACAAGTGGACAAT+GGG | + | chr1.2:50616786-50616805 | None:intergenic | 30.0% | |
| TCAAAACTGACAGAAAACAA+AGG | - | chr1.2:50615991-50616010 | MS.gene30877:intron | 30.0% | |
| TGGTATCTGGAAGAATTTAA+AGG | + | chr1.2:50618206-50618225 | None:intergenic | 30.0% | |
| TTATACTAACAAGTGGACAA+TGG | + | chr1.2:50616787-50616806 | None:intergenic | 30.0% | |
| ! | TAATTTGGAATGGAAATTGG+TGG | + | chr1.2:50618366-50618385 | None:intergenic | 30.0% |
| ! | TCCACTTGTTAGTATAATGA+GGG | - | chr1.2:50616790-50616809 | MS.gene30877:intron | 30.0% |
| !! | AAGTATGAACCGATTTGAAT+AGG | - | chr1.2:50618552-50618571 | MS.gene30877:CDS | 30.0% |
| !! | ACCATTCATTTAGTTTGTAC+AGG | + | chr1.2:50618624-50618643 | None:intergenic | 30.0% |
| !! | ATGGCTAAATTTTGATCACT+TGG | - | chr1.2:50618492-50618511 | MS.gene30877:CDS | 30.0% |
| !! | CATTCAAAACTTTAGAGTGA+TGG | + | chr1.2:50616394-50616413 | None:intergenic | 30.0% |
| !! | CCATTCATTTAGTTTGTACA+GGG | + | chr1.2:50618623-50618642 | None:intergenic | 30.0% |
| !! | TGTGGTTTCTTTTGTTTATG+AGG | - | chr1.2:50616977-50616996 | MS.gene30877:CDS | 30.0% |
| !! | TTCTTTGTTGTTGTAAGGTA+AGG | + | chr1.2:50617293-50617312 | None:intergenic | 30.0% |
| AAACAAAGGCAAAACAATGC+AGG | - | chr1.2:50616005-50616024 | MS.gene30877:intron | 35.0% | |
| AACAAAGATTCAAACACCTC+AGG | + | chr1.2:50616508-50616527 | None:intergenic | 35.0% | |
| AATAGCTTAATAGGACCAGA+TGG | - | chr1.2:50616300-50616319 | MS.gene30877:intron | 35.0% | |
| AATTAGATATCGTTGCTGTG+GGG | - | chr1.2:50618381-50618400 | MS.gene30877:intron | 35.0% | |
| ACAAAAGAAACCACAGAGTA+AGG | + | chr1.2:50616972-50616991 | None:intergenic | 35.0% | |
| ACCAATATCTTGACTGAATG+TGG | - | chr1.2:50618222-50618241 | MS.gene30877:CDS | 35.0% | |
| ACCCTCATTATACTAACAAG+TGG | + | chr1.2:50616794-50616813 | None:intergenic | 35.0% | |
| AGCTTAACAAATCATGCTAG+TGG | - | chr1.2:50617140-50617159 | MS.gene30877:intron | 35.0% | |
| ATCATTGCCTGTTCTTCTAT+TGG | - | chr1.2:50617798-50617817 | MS.gene30877:intron | 35.0% | |
| CAAATTAGATATCGTTGCTG+TGG | - | chr1.2:50618379-50618398 | MS.gene30877:intron | 35.0% | |
| CACAGCAACGATATCTAATT+TGG | + | chr1.2:50618381-50618400 | None:intergenic | 35.0% | |
| CAGCTCTACAATAGCTTAAT+AGG | - | chr1.2:50616291-50616310 | MS.gene30877:intron | 35.0% | |
| CAGGTCATAATGAATCCATT+AGG | + | chr1.2:50617166-50617185 | None:intergenic | 35.0% | |
| CATAATTACAAAGAAGCTGC+TGG | - | chr1.2:50618437-50618456 | MS.gene30877:CDS | 35.0% | |
| CCAATATCTTGACTGAATGT+GGG | - | chr1.2:50618223-50618242 | MS.gene30877:CDS | 35.0% | |
| CCCTGTACAAACTAAATGAA+TGG | - | chr1.2:50618620-50618639 | MS.gene30877:CDS | 35.0% | |
| CTATCCTTCAAAGCATATAG+AGG | + | chr1.2:50617108-50617127 | None:intergenic | 35.0% | |
| GAACATGTGACCAATGATAA+TGG | + | chr1.2:50615942-50615961 | None:intergenic | 35.0% | |
| GGATAAGAAACACACACTTT+GGG | + | chr1.2:50617457-50617476 | None:intergenic | 35.0% | |
| GGATCGGTAAAAATTTCTTC+AGG | + | chr1.2:50616122-50616141 | None:intergenic | 35.0% | |
| TAACTTTCTGCAGAACTTGT+TGG | - | chr1.2:50618162-50618181 | MS.gene30877:intron | 35.0% | |
| TAATGTATACACCATCCATC+TGG | + | chr1.2:50616318-50616337 | None:intergenic | 35.0% | |
| TATTGAAGAACCTTACTCTG+TGG | - | chr1.2:50616959-50616978 | MS.gene30877:CDS | 35.0% | |
| TCAGTCAAGATATTGGTATC+TGG | + | chr1.2:50618219-50618238 | None:intergenic | 35.0% | |
| TGGATAAGAAACACACACTT+TGG | + | chr1.2:50617458-50617477 | None:intergenic | 35.0% | |
| TGTTGTAAGGTAAGGAATCA+TGG | + | chr1.2:50617285-50617304 | None:intergenic | 35.0% | |
| TTCATTATTCTACTCAGGGT+TGG | - | chr1.2:50618580-50618599 | MS.gene30877:CDS | 35.0% | |
| TTTGCCTCTATATGCTTTGA+AGG | - | chr1.2:50617101-50617120 | MS.gene30877:intron | 35.0% | |
| ! | AGAGTTCACTTTGAAGAGTA+AGG | + | chr1.2:50618113-50618132 | None:intergenic | 35.0% |
| ! | ATAACAGTAGAGTGCTTGAA+AGG | + | chr1.2:50618308-50618327 | None:intergenic | 35.0% |
| ! | GAGGTGTTTGAATCTTTGTT+TGG | - | chr1.2:50616508-50616527 | MS.gene30877:intron | 35.0% |
| ! | GCATAGAGTATCTCTATGTT+AGG | - | chr1.2:50617024-50617043 | MS.gene30877:intron | 35.0% |
| ! | GTCCACTTGTTAGTATAATG+AGG | - | chr1.2:50616789-50616808 | MS.gene30877:intron | 35.0% |
| ! | TAATATAAGTGTGCTAGCCT+TGG | + | chr1.2:50617344-50617363 | None:intergenic | 35.0% |
| ! | TCTTATGGGAATGTTAGCTT+TGG | - | chr1.2:50616422-50616441 | MS.gene30877:intron | 35.0% |
| !! | AAAACTTTAGAGTGATGGTG+TGG | + | chr1.2:50616389-50616408 | None:intergenic | 35.0% |
| !! | CTAATGGATTCATTATGACC+TGG | - | chr1.2:50617164-50617183 | MS.gene30877:intron | 35.0% |
| !! | CTATATGCTTTGAAGGATAG+TGG | - | chr1.2:50617108-50617127 | MS.gene30877:intron | 35.0% |
| !! | GCTTGTTGTAAGCTTCAAAA+AGG | - | chr1.2:50616080-50616099 | MS.gene30877:intron | 35.0% |
| !! | GGTTTCTTTTGTTTATGAGG+AGG | - | chr1.2:50616980-50616999 | MS.gene30877:CDS | 35.0% |
| !!! | TCTTATTTTGGGCTAAGTGA+AGG | - | chr1.2:50617864-50617883 | MS.gene30877:intron | 35.0% |
| AAATCATGCTAGTGGCCTAA+TGG | - | chr1.2:50617148-50617167 | MS.gene30877:intron | 40.0% | |
| AAATGGACCTCAACATCTGA+AGG | + | chr1.2:50616143-50616162 | None:intergenic | 40.0% | |
| AATTTAGCCATCACTGCAGT+AGG | + | chr1.2:50618483-50618502 | None:intergenic | 40.0% | |
| AGGTTAAGCACATGGTCAAA+AGG | + | chr1.2:50618093-50618112 | None:intergenic | 40.0% | |
| ATCATTGGTCACATGTTCAG+CGG | - | chr1.2:50615944-50615963 | MS.gene30877:CDS | 40.0% | |
| ATTTAGCCATCACTGCAGTA+GGG | + | chr1.2:50618482-50618501 | None:intergenic | 40.0% | |
| CAAAACAATGCAGGTTTCAG+CGG | - | chr1.2:50616014-50616033 | MS.gene30877:intron | 40.0% | |
| CATGTAGATCACACGAGTTT+GGG | - | chr1.2:50617981-50618000 | MS.gene30877:intron | 40.0% | |
| CATTATGACCTGGCATAGTA+TGG | - | chr1.2:50617174-50617193 | MS.gene30877:intron | 40.0% | |
| CCCACATTCAGTCAAGATAT+TGG | + | chr1.2:50618226-50618245 | None:intergenic | 40.0% | |
| GAAGAGTAAGGTTAAGCACA+TGG | + | chr1.2:50618101-50618120 | None:intergenic | 40.0% | |
| GCTTCAACATATGCATTGTG+TGG | + | chr1.2:50618286-50618305 | None:intergenic | 40.0% | |
| TAAGAATACCACCAACAACG+TGG | + | chr1.2:50618341-50618360 | None:intergenic | 40.0% | |
| TATGTGTGGTACTTGATGGA+AGG | - | chr1.2:50618254-50618273 | MS.gene30877:intron | 40.0% | |
| TCTTCAGGAGATGGATAAGA+AGG | + | chr1.2:50616107-50616126 | None:intergenic | 40.0% | |
| TTTCCCTTGTAGTTTCTGCA+GGG | - | chr1.2:50617491-50617510 | MS.gene30877:intron | 40.0% | |
| TTTCTGCAGGGACTCAATTA+AGG | - | chr1.2:50617503-50617522 | MS.gene30877:intron | 40.0% | |
| ! | ATTTCAATAAGGAGGCATGC+AGG | - | chr1.2:50616545-50616564 | MS.gene30877:intron | 40.0% |
| ! | GTTCTGTCATCAAGCTTTTG+AGG | - | chr1.2:50617002-50617021 | MS.gene30877:intron | 40.0% |
| ! | TTTTCCCTTGTAGTTTCTGC+AGG | - | chr1.2:50617490-50617509 | MS.gene30877:intron | 40.0% |
| !! | CATGTGACCAATGATAATGG+CGG | + | chr1.2:50615939-50615958 | None:intergenic | 40.0% |
| !! | GTTTTGACCGTAGTTGTATG+TGG | + | chr1.2:50615978-50615997 | None:intergenic | 40.0% |
| !! | TATGCTTTGAAGGATAGTGG+TGG | - | chr1.2:50617111-50617130 | MS.gene30877:intron | 40.0% |
| AACGTGAACCATACTATGCC+AGG | + | chr1.2:50617185-50617204 | None:intergenic | 45.0% | |
| ACACACACTTTGGGTGTCTT+AGG | + | chr1.2:50617448-50617467 | None:intergenic | 45.0% | |
| ACTGTTACTGCCAAGTTCCA+AGG | - | chr1.2:50617324-50617343 | MS.gene30877:intron | 45.0% | |
| AGTCCCTGCAGAAACTACAA+GGG | + | chr1.2:50617497-50617516 | None:intergenic | 45.0% | |
| CTTTGTAATTATGCCGCCAG+AGG | + | chr1.2:50618430-50618449 | None:intergenic | 45.0% | |
| GACCTCAACATCTGAAGGAT+CGG | + | chr1.2:50616138-50616157 | None:intergenic | 45.0% | |
| GCATGTAGATCACACGAGTT+TGG | - | chr1.2:50617980-50617999 | MS.gene30877:intron | 45.0% | |
| GCTTAATAGGACCAGATGGA+TGG | - | chr1.2:50616304-50616323 | MS.gene30877:intron | 45.0% | |
| GGGTTATGTGTGGTACTTGA+TGG | - | chr1.2:50618250-50618269 | MS.gene30877:CDS | 45.0% | |
| TACCGATCCTTCAGATGTTG+AGG | - | chr1.2:50616133-50616152 | MS.gene30877:intron | 45.0% | |
| TCCAAGAACCGACTAATCCA+GGG | - | chr1.2:50616754-50616773 | MS.gene30877:intron | 45.0% | |
| TTGAAGCACAACCACGTTGT+TGG | - | chr1.2:50618327-50618346 | MS.gene30877:intron | 45.0% | |
| ! | TTAGAGTGATGGTGTGGTGT+GGG | + | chr1.2:50616383-50616402 | None:intergenic | 45.0% |
| ! | TTTAGAGTGATGGTGTGGTG+TGG | + | chr1.2:50616384-50616403 | None:intergenic | 45.0% |
| !! | GGATTGATCCCTGGATTAGT+CGG | + | chr1.2:50616765-50616784 | None:intergenic | 45.0% |
| AACACCTCATGGCCACTTCA+AGG | + | chr1.2:50617245-50617264 | None:intergenic | 50.0% | |
| AAGCACAACCACGTTGTTGG+TGG | - | chr1.2:50618330-50618349 | MS.gene30877:intron | 50.0% | |
| CCAGAGGAGAAGCAAAAACC+TGG | + | chr1.2:50618414-50618433 | None:intergenic | 50.0% | |
| CCTCATGCTCAAACACCTCA+TGG | + | chr1.2:50617256-50617275 | None:intergenic | 50.0% | |
| CTTGACTGAATGTGGGACGT+GGG | - | chr1.2:50618230-50618249 | MS.gene30877:CDS | 50.0% | |
| GAGTCCCTGCAGAAACTACA+AGG | + | chr1.2:50617498-50617517 | None:intergenic | 50.0% | |
| GCGAGAAGAAGGAATTGTCG+TGG | - | chr1.2:50616036-50616055 | MS.gene30877:intron | 50.0% | |
| GCGTCGTCCACATACAACTA+CGG | - | chr1.2:50615968-50615987 | MS.gene30877:CDS | 50.0% | |
| GTCCAAGAACCGACTAATCC+AGG | - | chr1.2:50616753-50616772 | MS.gene30877:intron | 50.0% | |
| TAGATATCGTTGCTGTGGGG+TGG | - | chr1.2:50618384-50618403 | MS.gene30877:intron | 50.0% | |
| TCTTCCTTGAAGTGGCCATG+AGG | - | chr1.2:50617238-50617257 | MS.gene30877:intron | 50.0% | |
| TCTTGACTGAATGTGGGACG+TGG | - | chr1.2:50618229-50618248 | MS.gene30877:CDS | 50.0% | |
| TGGACAATGGGATTGATCCC+TGG | + | chr1.2:50616774-50616793 | None:intergenic | 50.0% | |
| TGGCCACATCTTCCTTGAAG+TGG | - | chr1.2:50617230-50617249 | MS.gene30877:intron | 50.0% | |
| TGGCCACTTCAAGGAAGATG+TGG | + | chr1.2:50617236-50617255 | None:intergenic | 50.0% | |
| ! | CCAGGTTTTTGCTTCTCCTC+TGG | - | chr1.2:50618411-50618430 | MS.gene30877:CDS | 50.0% |
| ! | CCATGAGGTGTTTGAGCATG+AGG | - | chr1.2:50617253-50617272 | MS.gene30877:intron | 50.0% |
| ! | GGTTTTTGCTTCTCCTCTGG+CGG | - | chr1.2:50618414-50618433 | MS.gene30877:CDS | 50.0% |
| !! | AGTGTGCTAGCCTTGGAACT+TGG | + | chr1.2:50617337-50617356 | None:intergenic | 50.0% |
| !! | TCCCTGGATTAGTCGGTTCT+TGG | + | chr1.2:50616758-50616777 | None:intergenic | 50.0% |
| !! | TGGGCACTGACCAGAGTAAA+TGG | + | chr1.2:50616364-50616383 | None:intergenic | 50.0% |
| AGGTTTCAGCGGCGAGAAGA+AGG | - | chr1.2:50616025-50616044 | MS.gene30877:intron | 55.0% | |
| ATCTCTCACCACCACCACTC+TGG | - | chr1.2:50615908-50615927 | MS.gene30877:CDS | 55.0% | |
| GGCTCCGCACGGCAAAAATA+CGG | + | chr1.2:50616487-50616506 | None:intergenic | 55.0% | |
| TCCTCACCCTACTGCAGTGA+TGG | - | chr1.2:50618473-50618492 | MS.gene30877:CDS | 55.0% | |
| TGGCATTGCGTGCAAGGTTG+TGG | - | chr1.2:50616056-50616075 | MS.gene30877:intron | 55.0% | |
| TTGTCGTGGCATTGCGTGCA+AGG | - | chr1.2:50616050-50616069 | MS.gene30877:intron | 55.0% | |
| ! | GGTGCTGCCGCCATTATCAT+TGG | - | chr1.2:50615929-50615948 | MS.gene30877:CDS | 55.0% |
| ! | TGTGGGACGTGGGTTATGTG+TGG | - | chr1.2:50618240-50618259 | MS.gene30877:CDS | 55.0% |
| !! | GCGTCCGTATTTTTGCCGTG+CGG | - | chr1.2:50616480-50616499 | MS.gene30877:intron | 55.0% |
| CAAACACCTCAGGCTCCGCA+CGG | + | chr1.2:50616498-50616517 | None:intergenic | 60.0% | |
| GCCATCACTGCAGTAGGGTG+AGG | + | chr1.2:50618477-50618496 | None:intergenic | 60.0% | |
| TAATGGCGGCAGCACCAGAG+TGG | + | chr1.2:50615925-50615944 | None:intergenic | 60.0% | |
| ! | TTTTTGCCGTGCGGAGCCTG+AGG | - | chr1.2:50616489-50616508 | MS.gene30877:intron | 60.0% |
| CGGCAGCACCAGAGTGGTGG+TGG | + | chr1.2:50615919-50615938 | None:intergenic | 70.0% | |
| TGGCGGCAGCACCAGAGTGG+TGG | + | chr1.2:50615922-50615941 | None:intergenic | 70.0% | |
| TTGCTGTGGGGTGGCGTGCC+AGG | - | chr1.2:50618393-50618412 | MS.gene30877:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 50615903 | 50618660 | 50615903 | ID=MS.gene30877 |
| chr1.2 | mRNA | 50615903 | 50618660 | 50615903 | ID=MS.gene30877.t1;Parent=MS.gene30877 |
| chr1.2 | exon | 50618409 | 50618660 | 50618409 | ID=MS.gene30877.t1.exon1;Parent=MS.gene30877.t1 |
| chr1.2 | CDS | 50618409 | 50618660 | 50618409 | ID=cds.MS.gene30877.t1;Parent=MS.gene30877.t1 |
| chr1.2 | exon | 50618191 | 50618269 | 50618191 | ID=MS.gene30877.t1.exon2;Parent=MS.gene30877.t1 |
| chr1.2 | CDS | 50618191 | 50618269 | 50618191 | ID=cds.MS.gene30877.t1;Parent=MS.gene30877.t1 |
| chr1.2 | exon | 50617997 | 50618084 | 50617997 | ID=MS.gene30877.t1.exon3;Parent=MS.gene30877.t1 |
| chr1.2 | CDS | 50617997 | 50618084 | 50617997 | ID=cds.MS.gene30877.t1;Parent=MS.gene30877.t1 |
| chr1.2 | exon | 50616942 | 50617014 | 50616942 | ID=MS.gene30877.t1.exon4;Parent=MS.gene30877.t1 |
| chr1.2 | CDS | 50616942 | 50617014 | 50616942 | ID=cds.MS.gene30877.t1;Parent=MS.gene30877.t1 |
| chr1.2 | exon | 50615903 | 50615989 | 50615903 | ID=MS.gene30877.t1.exon5;Parent=MS.gene30877.t1 |
| chr1.2 | CDS | 50615903 | 50615989 | 50615903 | ID=cds.MS.gene30877.t1;Parent=MS.gene30877.t1 |
| Gene Sequence |
| Protein sequence |
