Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33682.t1 | XP_013441900.1 | 98.4 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 2.60E-102 | 381.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33682.t1 | Q9C523 | 48.7 | 189 | 92 | 2 | 3 | 190 | 1 | 185 | 1.2e-47 | 191.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33682.t1 | G7JKK5 | 98.4 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.9e-102 | 381.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049232 | MS.gene33682 | -0.802888 | 4.53E-49 | -1.69E-46 |
MS.gene049611 | MS.gene33682 | 0.849676 | 2.78E-60 | -1.69E-46 |
MS.gene049634 | MS.gene33682 | 0.824842 | 6.48E-54 | -1.69E-46 |
MS.gene050216 | MS.gene33682 | -0.832103 | 1.14E-55 | -1.69E-46 |
MS.gene050380 | MS.gene33682 | 0.810724 | 1.00E-50 | -1.69E-46 |
MS.gene050381 | MS.gene33682 | 0.873326 | 1.60E-67 | -1.69E-46 |
MS.gene05079 | MS.gene33682 | 0.802909 | 4.49E-49 | -1.69E-46 |
MS.gene050868 | MS.gene33682 | -0.810743 | 9.90E-51 | -1.69E-46 |
MS.gene050871 | MS.gene33682 | -0.811881 | 5.61E-51 | -1.69E-46 |
MS.gene050883 | MS.gene33682 | 0.800304 | 1.53E-48 | -1.69E-46 |
MS.gene051044 | MS.gene33682 | 0.804901 | 1.73E-49 | -1.69E-46 |
MS.gene05104 | MS.gene33682 | 0.829542 | 4.86E-55 | -1.69E-46 |
MS.gene051127 | MS.gene33682 | 0.843341 | 1.49E-58 | -1.69E-46 |
MS.gene051138 | MS.gene33682 | 0.835557 | 1.57E-56 | -1.69E-46 |
MS.gene051632 | MS.gene33682 | 0.83231 | 1.02E-55 | -1.69E-46 |
MS.gene051874 | MS.gene33682 | -0.800806 | 1.21E-48 | -1.69E-46 |
MS.gene052805 | MS.gene33682 | 0.819717 | 1.00E-52 | -1.69E-46 |
MS.gene053420 | MS.gene33682 | 0.877338 | 6.81E-69 | -1.69E-46 |
MS.gene053488 | MS.gene33682 | 0.850242 | 1.93E-60 | -1.69E-46 |
MS.gene053561 | MS.gene33682 | 0.831952 | 1.25E-55 | -1.69E-46 |
MS.gene053887 | MS.gene33682 | 0.801328 | 9.48E-49 | -1.69E-46 |
MS.gene054054 | MS.gene33682 | 0.802071 | 6.68E-49 | -1.69E-46 |
MS.gene054708 | MS.gene33682 | 0.810844 | 9.42E-51 | -1.69E-46 |
MS.gene055124 | MS.gene33682 | 0.868125 | 8.24E-66 | -1.69E-46 |
MS.gene055154 | MS.gene33682 | 0.871814 | 5.13E-67 | -1.69E-46 |
MS.gene055202 | MS.gene33682 | 0.838436 | 2.88E-57 | -1.69E-46 |
MS.gene055942 | MS.gene33682 | 0.804574 | 2.02E-49 | -1.69E-46 |
MS.gene055959 | MS.gene33682 | 0.874171 | 8.32E-68 | -1.69E-46 |
MS.gene056224 | MS.gene33682 | 0.816123 | 6.50E-52 | -1.69E-46 |
MS.gene056310 | MS.gene33682 | 0.807141 | 5.84E-50 | -1.69E-46 |
MS.gene056311 | MS.gene33682 | 0.818875 | 1.56E-52 | -1.69E-46 |
MS.gene056313 | MS.gene33682 | 0.82215 | 2.76E-53 | -1.69E-46 |
MS.gene056422 | MS.gene33682 | -0.801767 | 7.71E-49 | -1.69E-46 |
MS.gene056856 | MS.gene33682 | 0.810401 | 1.17E-50 | -1.69E-46 |
MS.gene057014 | MS.gene33682 | 0.801478 | 8.83E-49 | -1.69E-46 |
MS.gene057549 | MS.gene33682 | 0.832863 | 7.42E-56 | -1.69E-46 |
MS.gene058068 | MS.gene33682 | 0.810038 | 1.41E-50 | -1.69E-46 |
MS.gene058093 | MS.gene33682 | 0.863441 | 2.48E-64 | -1.69E-46 |
MS.gene058099 | MS.gene33682 | 0.871645 | 5.83E-67 | -1.69E-46 |
MS.gene058108 | MS.gene33682 | 0.865604 | 5.23E-65 | -1.69E-46 |
MS.gene058109 | MS.gene33682 | 0.853476 | 2.33E-61 | -1.69E-46 |
MS.gene058111 | MS.gene33682 | 0.809933 | 1.48E-50 | -1.69E-46 |
MS.gene058171 | MS.gene33682 | 0.873235 | 1.72E-67 | -1.69E-46 |
MS.gene058173 | MS.gene33682 | 0.870746 | 1.16E-66 | -1.69E-46 |
MS.gene058175 | MS.gene33682 | 0.880258 | 6.36E-70 | -1.69E-46 |
MS.gene058179 | MS.gene33682 | 0.877657 | 5.27E-69 | -1.69E-46 |
MS.gene058180 | MS.gene33682 | 0.825645 | 4.19E-54 | -1.69E-46 |
MS.gene058268 | MS.gene33682 | 0.805528 | 1.28E-49 | -1.69E-46 |
MS.gene058269 | MS.gene33682 | 0.813476 | 2.51E-51 | -1.69E-46 |
MS.gene058493 | MS.gene33682 | 0.81255 | 4.01E-51 | -1.69E-46 |
MS.gene058494 | MS.gene33682 | 0.817915 | 2.57E-52 | -1.69E-46 |
MS.gene058840 | MS.gene33682 | 0.824171 | 9.33E-54 | -1.69E-46 |
MS.gene059037 | MS.gene33682 | 0.885095 | 1.09E-71 | -1.69E-46 |
MS.gene059038 | MS.gene33682 | 0.87938 | 1.31E-69 | -1.69E-46 |
MS.gene059044 | MS.gene33682 | 0.828028 | 1.13E-54 | -1.69E-46 |
MS.gene059045 | MS.gene33682 | 0.863231 | 2.89E-64 | -1.69E-46 |
MS.gene059223 | MS.gene33682 | 0.824392 | 8.28E-54 | -1.69E-46 |
MS.gene059367 | MS.gene33682 | -0.800908 | 1.16E-48 | -1.69E-46 |
MS.gene059690 | MS.gene33682 | 0.807806 | 4.22E-50 | -1.69E-46 |
MS.gene059694 | MS.gene33682 | 0.805235 | 1.47E-49 | -1.69E-46 |
MS.gene059865 | MS.gene33682 | -0.805484 | 1.31E-49 | -1.69E-46 |
MS.gene059916 | MS.gene33682 | 0.806073 | 9.82E-50 | -1.69E-46 |
MS.gene060205 | MS.gene33682 | 0.812819 | 3.50E-51 | -1.69E-46 |
MS.gene060578 | MS.gene33682 | 0.808434 | 3.10E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33682.t1 | MTR_4g013385 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.78e-140 | 389 |
MS.gene33682.t1 | MTR_0433s0040 | 98.429 | 191 | 3 | 0 | 1 | 191 | 1 | 191 | 1.78e-140 | 389 |
MS.gene33682.t1 | MTR_4g013355 | 69.474 | 190 | 47 | 2 | 3 | 191 | 1 | 180 | 1.61e-92 | 268 |
MS.gene33682.t1 | MTR_4g013770 | 67.045 | 176 | 56 | 1 | 17 | 190 | 16 | 191 | 7.40e-83 | 244 |
MS.gene33682.t1 | MTR_4g013345 | 60.440 | 182 | 67 | 3 | 14 | 190 | 15 | 196 | 2.02e-75 | 225 |
MS.gene33682.t1 | MTR_4g013350 | 61.202 | 183 | 65 | 3 | 14 | 190 | 15 | 197 | 1.28e-74 | 223 |
MS.gene33682.t1 | MTR_4g013320 | 60.326 | 184 | 65 | 4 | 15 | 190 | 16 | 199 | 1.92e-72 | 218 |
MS.gene33682.t1 | MTR_7g070390 | 58.511 | 188 | 75 | 1 | 6 | 190 | 5 | 192 | 5.91e-72 | 216 |
MS.gene33682.t1 | MTR_4g013330 | 58.696 | 184 | 68 | 4 | 15 | 190 | 16 | 199 | 4.22e-71 | 214 |
MS.gene33682.t1 | MTR_4g013335 | 56.354 | 181 | 73 | 3 | 15 | 190 | 17 | 196 | 2.66e-69 | 209 |
MS.gene33682.t1 | MTR_4g013325 | 62.759 | 145 | 53 | 1 | 47 | 190 | 55 | 199 | 8.13e-66 | 201 |
MS.gene33682.t1 | MTR_4g013310 | 54.891 | 184 | 73 | 5 | 15 | 190 | 16 | 197 | 4.28e-65 | 199 |
MS.gene33682.t1 | MTR_1g054525 | 46.486 | 185 | 94 | 3 | 9 | 190 | 10 | 192 | 1.20e-56 | 177 |
MS.gene33682.t1 | MTR_7g093850 | 42.021 | 188 | 106 | 3 | 6 | 190 | 7 | 194 | 1.97e-47 | 154 |
MS.gene33682.t1 | MTR_7g093790 | 41.989 | 181 | 99 | 4 | 13 | 190 | 14 | 191 | 1.64e-46 | 151 |
MS.gene33682.t1 | MTR_7g093820 | 40.426 | 188 | 109 | 3 | 6 | 190 | 7 | 194 | 1.89e-46 | 151 |
MS.gene33682.t1 | MTR_4g073950 | 44.444 | 153 | 83 | 1 | 40 | 190 | 40 | 192 | 1.20e-45 | 149 |
MS.gene33682.t1 | MTR_7g093830 | 41.143 | 175 | 100 | 3 | 19 | 190 | 19 | 193 | 9.05e-45 | 147 |
MS.gene33682.t1 | MTR_1g056370 | 45.695 | 151 | 81 | 1 | 40 | 189 | 35 | 185 | 2.54e-43 | 143 |
MS.gene33682.t1 | MTR_7g093870 | 41.975 | 162 | 76 | 3 | 41 | 190 | 38 | 193 | 1.12e-39 | 135 |
MS.gene33682.t1 | MTR_4g078885 | 36.872 | 179 | 111 | 2 | 14 | 191 | 9 | 186 | 1.74e-38 | 130 |
MS.gene33682.t1 | MTR_3g034030 | 37.222 | 180 | 111 | 2 | 13 | 191 | 8 | 186 | 1.76e-38 | 130 |
MS.gene33682.t1 | MTR_5g096120 | 37.234 | 188 | 107 | 5 | 9 | 190 | 7 | 189 | 1.63e-37 | 128 |
MS.gene33682.t1 | MTR_3g105640 | 41.558 | 154 | 83 | 3 | 42 | 190 | 37 | 188 | 3.38e-37 | 127 |
MS.gene33682.t1 | MTR_3g105630 | 37.634 | 186 | 107 | 5 | 11 | 190 | 7 | 189 | 1.53e-36 | 125 |
MS.gene33682.t1 | MTR_4g122130 | 34.211 | 152 | 99 | 1 | 40 | 190 | 29 | 180 | 8.15e-25 | 95.5 |
MS.gene33682.t1 | MTR_4g122110 | 33.974 | 156 | 99 | 2 | 36 | 190 | 28 | 180 | 1.08e-23 | 92.8 |
MS.gene33682.t1 | MTR_4g049550 | 33.088 | 136 | 90 | 1 | 42 | 176 | 29 | 164 | 8.25e-17 | 74.7 |
MS.gene33682.t1 | MTR_4g049570 | 31.915 | 141 | 90 | 2 | 46 | 185 | 33 | 168 | 5.27e-16 | 72.4 |
MS.gene33682.t1 | MTR_1g046490 | 39.560 | 91 | 54 | 1 | 77 | 167 | 121 | 210 | 4.80e-14 | 68.6 |
MS.gene33682.t1 | MTR_1g046500 | 40.659 | 91 | 53 | 1 | 77 | 167 | 135 | 224 | 1.78e-13 | 67.0 |
MS.gene33682.t1 | MTR_1g046800 | 41.111 | 90 | 52 | 1 | 78 | 167 | 136 | 224 | 2.08e-13 | 67.0 |
MS.gene33682.t1 | MTR_1g115510 | 37.815 | 119 | 67 | 4 | 78 | 189 | 235 | 353 | 1.69e-12 | 65.1 |
MS.gene33682.t1 | MTR_8g099135 | 31.618 | 136 | 69 | 5 | 50 | 169 | 37 | 164 | 3.73e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene33682.t1 | AT1G58170 | 48.421 | 190 | 91 | 3 | 3 | 190 | 1 | 185 | 1.28e-63 | 194 |
MS.gene33682.t1 | AT1G55210 | 50.802 | 187 | 87 | 3 | 7 | 190 | 3 | 187 | 5.00e-63 | 193 |
MS.gene33682.t1 | AT1G55210 | 50.802 | 187 | 87 | 3 | 7 | 190 | 3 | 187 | 5.00e-63 | 193 |
MS.gene33682.t1 | AT3G13650 | 53.216 | 171 | 77 | 2 | 21 | 190 | 18 | 186 | 8.19e-61 | 187 |
MS.gene33682.t1 | AT5G49040 | 46.995 | 183 | 91 | 3 | 11 | 190 | 12 | 191 | 1.67e-54 | 172 |
MS.gene33682.t1 | AT1G65870 | 45.033 | 151 | 82 | 1 | 40 | 189 | 39 | 189 | 5.89e-46 | 150 |
MS.gene33682.t1 | AT3G13660 | 58.120 | 117 | 49 | 0 | 74 | 190 | 9 | 125 | 1.31e-43 | 142 |
MS.gene33682.t1 | AT5G42500 | 46.575 | 146 | 73 | 3 | 46 | 189 | 43 | 185 | 1.45e-43 | 144 |
MS.gene33682.t1 | AT5G42510 | 44.667 | 150 | 80 | 2 | 41 | 189 | 35 | 182 | 3.00e-43 | 143 |
MS.gene33682.t1 | AT5G49030 | 45.029 | 171 | 89 | 3 | 18 | 185 | 16 | 184 | 6.67e-42 | 150 |
MS.gene33682.t1 | AT3G13662 | 46.715 | 137 | 71 | 1 | 41 | 177 | 38 | 172 | 7.93e-41 | 136 |
MS.gene33682.t1 | AT1G22900 | 44.000 | 150 | 81 | 2 | 41 | 189 | 46 | 193 | 9.82e-40 | 134 |
MS.gene33682.t1 | AT2G21100 | 40.940 | 149 | 87 | 1 | 42 | 189 | 39 | 187 | 9.89e-39 | 131 |
MS.gene33682.t1 | AT2G21100 | 40.940 | 149 | 87 | 1 | 42 | 189 | 39 | 187 | 9.89e-39 | 131 |
MS.gene33682.t1 | AT3G58090 | 46.789 | 109 | 58 | 0 | 81 | 189 | 163 | 271 | 5.98e-34 | 121 |
MS.gene33682.t1 | AT2G21110 | 38.411 | 151 | 88 | 1 | 45 | 190 | 36 | 186 | 3.07e-32 | 115 |
MS.gene33682.t1 | AT4G38700 | 36.842 | 190 | 107 | 6 | 8 | 190 | 7 | 190 | 9.80e-31 | 111 |
MS.gene33682.t1 | AT4G23690 | 32.117 | 137 | 87 | 4 | 37 | 169 | 32 | 166 | 2.58e-15 | 70.9 |
MS.gene33682.t1 | AT4G11210 | 27.746 | 173 | 113 | 6 | 5 | 173 | 2 | 166 | 1.12e-13 | 66.6 |
MS.gene33682.t1 | AT4G11190 | 29.630 | 135 | 89 | 3 | 39 | 169 | 30 | 162 | 3.26e-13 | 65.5 |
MS.gene33682.t1 | AT4G11180 | 32.374 | 139 | 87 | 5 | 36 | 169 | 28 | 164 | 1.15e-11 | 61.2 |
Find 40 sgRNAs with CRISPR-Local
Find 45 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTCTTCTTCTGAACAATTT+AGG | 0.169887 | 4.3:-84131942 | None:intergenic |
ACCTCAATTGAGCTCAAAAT+TGG | 0.270077 | 4.3:+84132109 | MS.gene33682:CDS |
TGGAAGCACAATTACTATCT+TGG | 0.342636 | 4.3:+84132226 | MS.gene33682:CDS |
TTATTTGAAGGGAAATATAA+TGG | 0.360119 | 4.3:+84132206 | MS.gene33682:CDS |
TTAGCCACTTTAGATTCTAT+TGG | 0.363260 | 4.3:+84131970 | MS.gene33682:CDS |
AAGCTCAGTTTGTGAGGTAT+AGG | 0.375610 | 4.3:-84132156 | None:intergenic |
GGAAGCACAATTACTATCTT+GGG | 0.437728 | 4.3:+84132227 | MS.gene33682:CDS |
ATCTATTGATCCCACGAAAC+CGG | 0.454018 | 4.3:-84131919 | None:intergenic |
AAGAAATGATGCTTATGAAA+AGG | 0.476165 | 4.3:+84132250 | MS.gene33682:CDS |
AAATTGGTTGGAAGGGCTCA+AGG | 0.505137 | 4.3:+84132125 | MS.gene33682:CDS |
ATGCCTGTGATTGGTGGAAG+TGG | 0.512180 | 4.3:+84132281 | MS.gene33682:CDS |
CATAGACAACGCTTTAACCT+CGG | 0.517171 | 4.3:+84132085 | MS.gene33682:CDS |
TGAGCTCAAAATTGGTTGGA+AGG | 0.519356 | 4.3:+84132117 | MS.gene33682:CDS |
TACTATTTGAATACCACTAC+AGG | 0.522854 | 4.3:+84132344 | MS.gene33682:CDS |
CAATTGAGCTCAAAATTGGT+TGG | 0.529085 | 4.3:+84132113 | MS.gene33682:CDS |
CATGCCAATAGAATCTAAAG+TGG | 0.545838 | 4.3:-84131974 | None:intergenic |
GTTAGAGAAATGCCTGTGAT+TGG | 0.553503 | 4.3:+84132272 | MS.gene33682:CDS |
ACAAGATGAGACCGGTTTCG+TGG | 0.556174 | 4.3:+84131908 | MS.gene33682:CDS |
AAGTTTAACACAACAAACTT+CGG | 0.557297 | 4.3:+84132050 | MS.gene33682:CDS |
ATAGACAACGCTTTAACCTC+GGG | 0.557789 | 4.3:+84132086 | MS.gene33682:CDS |
GTTGTGTTAAACTTCGGAAG+AGG | 0.562627 | 4.3:-84132041 | None:intergenic |
GTGTTAAACTTCGGAAGAGG+TGG | 0.563949 | 4.3:-84132038 | None:intergenic |
AAAATTAAGCTCAGTTTGTG+AGG | 0.564947 | 4.3:-84132162 | None:intergenic |
GGGTGTAACAAGAAAGGAGA+AGG | 0.565271 | 4.3:-84131869 | None:intergenic |
TTGTGAGGGTGTAACAAGAA+AGG | 0.567784 | 4.3:-84131875 | None:intergenic |
AAGTTTGTTGTGTTAAACTT+CGG | 0.573223 | 4.3:-84132047 | None:intergenic |
CAAGATGAGACCGGTTTCGT+GGG | 0.576259 | 4.3:+84131909 | MS.gene33682:CDS |
GAGCTCAAAATTGGTTGGAA+GGG | 0.580534 | 4.3:+84132118 | MS.gene33682:CDS |
AGTCCACTTCCACCAATCAC+AGG | 0.592137 | 4.3:-84132284 | None:intergenic |
AGAGAAATGCCTGTGATTGG+TGG | 0.594056 | 4.3:+84132275 | MS.gene33682:CDS |
AATTGGTTGGAAGGGCTCAA+GGG | 0.595873 | 4.3:+84132126 | MS.gene33682:CDS |
CTTGTGCAGTGACGATTGTG+AGG | 0.610302 | 4.3:-84131890 | None:intergenic |
AGTTGTAGCATCTCCTGTAG+TGG | 0.622414 | 4.3:-84132357 | None:intergenic |
GTCACTGCACAAGATGAGAC+CGG | 0.630861 | 4.3:+84131900 | MS.gene33682:CDS |
TGAGCTCAATTGAGGTCCCG+AGG | 0.649605 | 4.3:-84132102 | None:intergenic |
TGGAATAATTTCGATCGCGG+TGG | 0.668764 | 4.3:-84132018 | None:intergenic |
TATTGGCATGACGTAGTCAG+CGG | 0.668999 | 4.3:+84131987 | MS.gene33682:CDS |
AGGTGGAATAATTTCGATCG+CGG | 0.693640 | 4.3:-84132021 | None:intergenic |
TTGTGCAGTGACGATTGTGA+GGG | 0.713813 | 4.3:-84131889 | None:intergenic |
TAACACAACAAACTTCGGTG+AGG | 0.721589 | 4.3:+84132055 | MS.gene33682:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTTGAAGGGAAATATAA+TGG | + | chr4.3:84132206-84132225 | MS.gene33682:CDS | 20.0% |
!!! | ATGAATTTTGCATTATTTGA+AGG | + | chr4.3:84132194-84132213 | MS.gene33682:CDS | 20.0% |
!!! | TGAATTTTGCATTATTTGAA+GGG | + | chr4.3:84132195-84132214 | MS.gene33682:CDS | 20.0% |
! | AAGAAATGATGCTTATGAAA+AGG | + | chr4.3:84132250-84132269 | MS.gene33682:CDS | 25.0% |
! | AAGTTTAACACAACAAACTT+CGG | + | chr4.3:84132050-84132069 | MS.gene33682:CDS | 25.0% |
!!! | AAGTTTGTTGTGTTAAACTT+CGG | - | chr4.3:84132050-84132069 | None:intergenic | 25.0% |
AAAATTAAGCTCAGTTTGTG+AGG | - | chr4.3:84132165-84132184 | None:intergenic | 30.0% | |
TACTATTTGAATACCACTAC+AGG | + | chr4.3:84132344-84132363 | MS.gene33682:CDS | 30.0% | |
TGTCTTCTTCTGAACAATTT+AGG | - | chr4.3:84131945-84131964 | None:intergenic | 30.0% | |
! | TTAGCCACTTTAGATTCTAT+TGG | + | chr4.3:84131970-84131989 | MS.gene33682:CDS | 30.0% |
!!! | GGACTTTTTAGATTTGCTAA+GGG | + | chr4.3:84132302-84132321 | MS.gene33682:CDS | 30.0% |
!!! | TGGACTTTTTAGATTTGCTA+AGG | + | chr4.3:84132301-84132320 | MS.gene33682:CDS | 30.0% |
ACCTCAATTGAGCTCAAAAT+TGG | + | chr4.3:84132109-84132128 | MS.gene33682:CDS | 35.0% | |
CAATTGAGCTCAAAATTGGT+TGG | + | chr4.3:84132113-84132132 | MS.gene33682:CDS | 35.0% | |
CATGCCAATAGAATCTAAAG+TGG | - | chr4.3:84131977-84131996 | None:intergenic | 35.0% | |
! | ACCAATTTTGAGCTCAATTG+AGG | - | chr4.3:84132113-84132132 | None:intergenic | 35.0% |
! | GGAAGCACAATTACTATCTT+GGG | + | chr4.3:84132227-84132246 | MS.gene33682:CDS | 35.0% |
! | TGGAAGCACAATTACTATCT+TGG | + | chr4.3:84132226-84132245 | MS.gene33682:CDS | 35.0% |
AAGCTCAGTTTGTGAGGTAT+AGG | - | chr4.3:84132159-84132178 | None:intergenic | 40.0% | |
AGGTGGAATAATTTCGATCG+CGG | - | chr4.3:84132024-84132043 | None:intergenic | 40.0% | |
ATAGACAACGCTTTAACCTC+GGG | + | chr4.3:84132086-84132105 | MS.gene33682:CDS | 40.0% | |
ATCTATTGATCCCACGAAAC+CGG | - | chr4.3:84131922-84131941 | None:intergenic | 40.0% | |
CATAGACAACGCTTTAACCT+CGG | + | chr4.3:84132085-84132104 | MS.gene33682:CDS | 40.0% | |
GAGCTCAAAATTGGTTGGAA+GGG | + | chr4.3:84132118-84132137 | MS.gene33682:CDS | 40.0% | |
GTTAGAGAAATGCCTGTGAT+TGG | + | chr4.3:84132272-84132291 | MS.gene33682:CDS | 40.0% | |
GTTGTGTTAAACTTCGGAAG+AGG | - | chr4.3:84132044-84132063 | None:intergenic | 40.0% | |
TAACACAACAAACTTCGGTG+AGG | + | chr4.3:84132055-84132074 | MS.gene33682:CDS | 40.0% | |
TGAGCTCAAAATTGGTTGGA+AGG | + | chr4.3:84132117-84132136 | MS.gene33682:CDS | 40.0% | |
! | TTGTGAGGGTGTAACAAGAA+AGG | - | chr4.3:84131878-84131897 | None:intergenic | 40.0% |
AAATTGGTTGGAAGGGCTCA+AGG | + | chr4.3:84132125-84132144 | MS.gene33682:CDS | 45.0% | |
AATTGGTTGGAAGGGCTCAA+GGG | + | chr4.3:84132126-84132145 | MS.gene33682:CDS | 45.0% | |
AGAGAAATGCCTGTGATTGG+TGG | + | chr4.3:84132275-84132294 | MS.gene33682:CDS | 45.0% | |
AGTTGTAGCATCTCCTGTAG+TGG | - | chr4.3:84132360-84132379 | None:intergenic | 45.0% | |
GGGTGTAACAAGAAAGGAGA+AGG | - | chr4.3:84131872-84131891 | None:intergenic | 45.0% | |
GTGTTAAACTTCGGAAGAGG+TGG | - | chr4.3:84132041-84132060 | None:intergenic | 45.0% | |
TATTGGCATGACGTAGTCAG+CGG | + | chr4.3:84131987-84132006 | MS.gene33682:CDS | 45.0% | |
TGGAATAATTTCGATCGCGG+TGG | - | chr4.3:84132021-84132040 | None:intergenic | 45.0% | |
TTGTGCAGTGACGATTGTGA+GGG | - | chr4.3:84131892-84131911 | None:intergenic | 45.0% | |
AGTCCACTTCCACCAATCAC+AGG | - | chr4.3:84132287-84132306 | None:intergenic | 50.0% | |
ATGCCTGTGATTGGTGGAAG+TGG | + | chr4.3:84132281-84132300 | MS.gene33682:CDS | 50.0% | |
CTTGTGCAGTGACGATTGTG+AGG | - | chr4.3:84131893-84131912 | None:intergenic | 50.0% | |
GTCACTGCACAAGATGAGAC+CGG | + | chr4.3:84131900-84131919 | MS.gene33682:CDS | 50.0% | |
! | ACAAGATGAGACCGGTTTCG+TGG | + | chr4.3:84131908-84131927 | MS.gene33682:CDS | 50.0% |
! | CAAGATGAGACCGGTTTCGT+GGG | + | chr4.3:84131909-84131928 | MS.gene33682:CDS | 50.0% |
TGAGCTCAATTGAGGTCCCG+AGG | - | chr4.3:84132105-84132124 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 84131837 | 84132412 | 84131837 | ID=MS.gene33682 |
chr4.3 | mRNA | 84131837 | 84132412 | 84131837 | ID=MS.gene33682.t1;Parent=MS.gene33682 |
chr4.3 | exon | 84131837 | 84132412 | 84131837 | ID=MS.gene33682.t1.exon1;Parent=MS.gene33682.t1 |
chr4.3 | CDS | 84131837 | 84132412 | 84131837 | ID=cds.MS.gene33682.t1;Parent=MS.gene33682.t1 |
Gene Sequence |
Protein sequence |