AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37749


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37749.t1 MTR_6g078380 93.512 447 29 0 13 459 76 522 0.0 857
MS.gene37749.t1 MTR_6g078450 83.296 443 73 1 13 455 76 517 0.0 795
MS.gene37749.t1 MTR_6g078330 76.286 447 105 1 13 459 77 522 0.0 724
MS.gene37749.t1 MTR_6g078450 83.812 383 61 1 13 395 76 457 0.0 691
MS.gene37749.t1 MTR_6g078330 76.611 419 97 1 41 459 1 418 0.0 683
MS.gene37749.t1 MTR_2g098520 69.885 435 130 1 16 450 77 510 0.0 659
MS.gene37749.t1 MTR_3g028720 68.807 436 135 1 16 451 81 515 0.0 651
MS.gene37749.t1 MTR_2g098790 69.124 434 133 1 16 449 81 513 0.0 650
MS.gene37749.t1 MTR_2g098540 68.966 435 134 1 16 450 74 507 0.0 649
MS.gene37749.t1 MTR_4g066580 68.807 436 135 1 16 451 82 516 0.0 648
MS.gene37749.t1 MTR_2g098540 68.966 435 134 1 16 450 30 463 0.0 646
MS.gene37749.t1 MTR_6g078330 74.693 407 100 2 53 459 15 418 0.0 645
MS.gene37749.t1 MTR_4g066210 67.512 434 140 1 16 449 86 518 0.0 639
MS.gene37749.t1 MTR_4g066340 68.276 435 137 1 15 449 5 438 0.0 634
MS.gene37749.t1 MTR_4g066240 66.820 434 143 1 16 449 79 511 0.0 634
MS.gene37749.t1 MTR_4g066240 66.667 435 143 2 16 449 79 512 0.0 629
MS.gene37749.t1 MTR_4g066590 67.816 435 139 1 17 451 77 510 0.0 629
MS.gene37749.t1 MTR_4g066630 66.516 442 147 1 17 458 83 523 0.0 629
MS.gene37749.t1 MTR_5g071520 67.117 444 136 2 16 450 82 524 0.0 612
MS.gene37749.t1 MTR_4g066640 64.908 436 148 3 16 450 82 513 0.0 606
MS.gene37749.t1 MTR_4g066330 64.531 437 128 3 16 451 84 494 0.0 586
MS.gene37749.t1 MTR_4g066280 62.759 435 135 3 16 449 84 492 0.0 573
MS.gene37749.t1 MTR_3g028720 69.737 380 114 1 16 395 81 459 0.0 573
MS.gene37749.t1 MTR_3g026280 60.690 435 165 2 16 450 65 493 0.0 552
MS.gene37749.t1 MTR_4g066630 66.931 378 124 1 17 394 83 459 0.0 547
MS.gene37749.t1 MTR_4g023000 59.497 437 170 3 13 449 64 493 0.0 539
MS.gene37749.t1 MTR_3g028720 71.512 344 97 1 16 359 81 423 0.0 530
MS.gene37749.t1 MTR_4g066580 70.690 348 101 1 16 363 82 428 0.0 526
MS.gene37749.t1 MTR_4g066630 68.805 343 106 1 17 359 83 424 2.40e-179 509
MS.gene37749.t1 MTR_3g026400 55.300 434 187 4 16 448 49 476 1.27e-177 506
MS.gene37749.t1 MTR_3g026400 55.300 434 187 4 16 448 80 507 1.62e-177 507
MS.gene37749.t1 MTR_4g066240 65.988 344 116 1 16 359 79 421 8.99e-175 497
MS.gene37749.t1 MTR_4g015420 54.955 444 162 4 17 449 108 524 3.01e-174 499
MS.gene37749.t1 MTR_2g043200 56.293 437 159 5 18 449 109 518 6.37e-173 496
MS.gene37749.t1 MTR_6g078330 75.828 302 72 1 13 314 77 377 1.50e-171 487
MS.gene37749.t1 MTR_4g067040 68.882 331 102 1 17 347 78 407 5.47e-170 484
MS.gene37749.t1 MTR_4g083000 54.713 435 192 4 17 449 71 502 1.04e-169 487
MS.gene37749.t1 MTR_3g026620 54.503 433 192 3 16 448 81 508 1.39e-167 482
MS.gene37749.t1 MTR_3g028720 71.336 307 87 1 16 322 81 386 4.24e-167 476
MS.gene37749.t1 MTR_5g044000 54.670 439 193 5 13 448 85 520 1.40e-166 479
MS.gene37749.t1 MTR_4g015460 53.950 443 167 6 18 450 86 501 1.06e-164 474
MS.gene37749.t1 MTR_4g067040 70.588 306 89 1 17 322 78 382 3.29e-161 461
MS.gene37749.t1 MTR_0110s0040 52.765 434 198 5 18 451 87 513 1.27e-159 461
MS.gene37749.t1 MTR_4g081530 51.802 444 207 4 17 455 67 508 3.05e-158 458
MS.gene37749.t1 MTR_0110s0030 51.843 434 202 5 18 451 87 513 6.14e-157 454
MS.gene37749.t1 MTR_4g083000 54.501 411 182 4 41 449 1 408 8.02e-157 451
MS.gene37749.t1 MTR_4g066630 68.562 299 93 1 17 315 83 380 4.33e-156 447
MS.gene37749.t1 MTR_4g066640 65.064 312 104 3 16 326 82 389 4.75e-150 432
MS.gene37749.t1 MTR_4g131810 48.037 433 221 4 18 448 73 503 1.03e-143 421
MS.gene37749.t1 MTR_3g033790 47.575 433 213 4 17 449 62 480 1.42e-143 420
MS.gene37749.t1 MTR_3g033810 48.276 435 208 5 17 449 64 483 6.65e-142 416
MS.gene37749.t1 MTR_2g022760 46.188 446 235 5 16 459 79 521 2.00e-137 405
MS.gene37749.t1 MTR_2g079580 44.111 433 239 3 18 450 76 505 7.30e-134 396
MS.gene37749.t1 MTR_2g079550 45.012 431 234 3 18 448 74 501 1.09e-133 396
MS.gene37749.t1 MTR_4g131800 46.544 434 227 5 20 451 562 992 1.06e-131 405
MS.gene37749.t1 MTR_2g022710 44.875 439 237 5 18 454 79 514 1.67e-131 390
MS.gene37749.t1 MTR_7g068910 44.907 432 224 4 21 451 78 496 1.19e-125 375
MS.gene37749.t1 MTR_4g016920 43.187 433 230 5 21 451 74 492 1.94e-124 372
MS.gene37749.t1 MTR_2g022760 44.656 421 228 5 41 459 1 418 2.06e-123 365
MS.gene37749.t1 MTR_7g068910 43.891 442 224 5 21 451 78 506 2.09e-122 367
MS.gene37749.t1 MTR_7g033860 43.972 423 221 6 28 448 103 511 2.26e-122 366
MS.gene37749.t1 MTR_3g026400 60.000 275 107 2 16 290 80 351 1.07e-120 357
MS.gene37749.t1 MTR_5g068740 43.387 431 225 7 23 449 74 489 2.70e-120 361
MS.gene37749.t1 MTR_0108s0030 41.667 456 228 6 1 448 23 448 6.21e-120 358
MS.gene37749.t1 MTR_2g022710 43.750 416 229 5 41 454 1 413 1.12e-119 356
MS.gene37749.t1 MTR_1g088610 42.424 429 231 5 23 449 74 488 2.59e-117 357
MS.gene37749.t1 MTR_1g088610 32.639 144 74 3 323 449 476 613 9.32e-17 83.2
MS.gene37749.t1 MTR_7g068900 43.529 425 211 6 36 451 17 421 2.33e-115 347
MS.gene37749.t1 MTR_4g016920 42.373 413 222 5 41 451 1 399 6.07e-114 342
MS.gene37749.t1 MTR_7g051610 43.091 427 227 6 28 452 123 535 6.21e-114 345
MS.gene37749.t1 MTR_7g051650 43.365 422 226 5 28 448 119 528 9.54e-112 340
MS.gene37749.t1 MTR_7g051650 43.365 422 226 5 28 448 123 532 1.08e-111 340
MS.gene37749.t1 MTR_7g051510 41.685 451 246 8 1 448 95 531 1.86e-111 339
MS.gene37749.t1 MTR_2g079580 45.614 342 184 2 18 359 76 415 3.23e-108 327
MS.gene37749.t1 MTR_2g022710 43.799 379 210 3 18 395 79 455 1.72e-107 327
MS.gene37749.t1 MTR_0110s0040 52.349 298 138 3 18 315 87 380 1.74e-107 325
MS.gene37749.t1 MTR_2g022710 43.799 379 210 3 18 395 79 455 3.40e-107 326
MS.gene37749.t1 MTR_1g088630 41.014 434 206 9 23 449 42 432 8.93e-106 322
MS.gene37749.t1 MTR_2g022710 45.481 343 184 3 18 359 79 419 2.57e-103 314
MS.gene37749.t1 MTR_7g056747 40.714 420 222 5 35 453 9 402 2.86e-103 313
MS.gene37749.t1 MTR_2g022710 44.985 329 178 3 18 345 79 405 2.82e-97 298
MS.gene37749.t1 MTR_2g022710 46.405 306 161 3 18 322 79 382 9.92e-91 282
MS.gene37749.t1 MTR_4g016920 48.352 273 139 1 41 313 1 271 1.04e-89 275
MS.gene37749.t1 MTR_1g088630 47.232 271 116 4 23 292 74 318 9.05e-81 254
MS.gene37749.t1 MTR_1g088630 51.835 218 102 2 23 239 74 289 4.51e-73 233
MS.gene37749.t1 MTR_0110s0020 55.978 184 78 2 18 201 87 267 2.72e-69 223
MS.gene37749.t1 MTR_5g069350 45.810 179 43 7 287 449 48 188 5.01e-34 126
MS.gene37749.t1 MTR_4g122980 25.122 410 233 12 37 440 183 524 2.94e-25 109
MS.gene37749.t1 MTR_8g038650 42.373 118 58 1 187 294 35 152 3.10e-23 96.3
MS.gene37749.t1 MTR_4g061170 52.830 53 23 1 385 435 12 64 8.35e-12 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37749.t1 AT5G44640 55.378 437 188 3 16 451 74 504 0.0 516
MS.gene37749.t1 AT5G42260 56.744 430 179 3 16 444 74 497 2.85e-180 514
MS.gene37749.t1 AT2G44450 54.587 436 192 2 16 451 74 503 5.96e-179 510
MS.gene37749.t1 AT3G60130 55.402 435 187 3 16 449 73 501 1.01e-173 497
MS.gene37749.t1 AT2G44480 52.414 435 205 2 16 450 78 510 1.78e-173 497
MS.gene37749.t1 AT2G44480 52.414 435 205 2 16 450 109 541 5.93e-173 497
MS.gene37749.t1 AT3G60130 55.288 416 179 3 35 449 40 449 3.46e-167 479
MS.gene37749.t1 AT1G47600 53.456 434 192 4 16 448 85 509 8.85e-166 477
MS.gene37749.t1 AT1G51470 53.456 434 192 4 16 448 85 509 9.50e-165 474
MS.gene37749.t1 AT1G47600 52.995 434 193 4 16 448 85 508 1.42e-164 474
MS.gene37749.t1 AT1G26560 53.687 434 197 3 17 448 75 506 9.77e-164 472
MS.gene37749.t1 AT2G44480 52.195 410 194 2 41 450 1 408 1.02e-163 468
MS.gene37749.t1 AT2G25630 52.403 437 184 4 16 451 73 486 1.78e-163 470
MS.gene37749.t1 AT5G54570 51.382 434 207 3 17 448 74 505 4.36e-160 463
MS.gene37749.t1 AT3G60140 49.195 435 217 4 23 454 75 508 2.04e-158 461
MS.gene37749.t1 AT5G24550 50.348 431 209 5 23 449 81 510 2.42e-158 459
MS.gene37749.t1 AT3G18080 52.273 440 204 4 11 450 76 509 6.32e-158 457
MS.gene37749.t1 AT3G60130 53.365 416 176 4 35 449 40 438 1.07e-157 454
MS.gene37749.t1 AT3G60120 50.808 433 206 6 22 450 62 491 2.98e-153 446
MS.gene37749.t1 AT3G18070 49.887 441 205 7 11 450 67 492 1.22e-152 443
MS.gene37749.t1 AT3G18070 49.887 441 211 7 11 450 67 498 6.11e-152 441
MS.gene37749.t1 AT5G24540 50.808 433 206 6 23 450 81 511 6.90e-152 442
MS.gene37749.t1 AT5G54570 51.463 410 195 3 41 448 1 408 6.26e-151 437
MS.gene37749.t1 AT2G44460 49.770 434 211 6 22 451 77 507 2.11e-149 438
MS.gene37749.t1 AT5G25980 49.539 434 210 8 20 449 95 523 1.02e-148 435
MS.gene37749.t1 AT2G44470 47.018 436 225 5 22 453 77 510 1.70e-148 436
MS.gene37749.t1 AT5G36890 48.174 438 214 4 13 449 55 480 8.18e-144 420
MS.gene37749.t1 AT5G36890 48.174 438 214 4 13 449 55 480 8.54e-144 420
MS.gene37749.t1 AT5G26000 50.230 434 206 6 20 448 83 511 1.06e-143 422
MS.gene37749.t1 AT2G44490 47.380 439 222 7 17 449 58 493 2.76e-141 416
MS.gene37749.t1 AT2G44450 52.235 358 165 2 94 451 1 352 1.23e-138 402
MS.gene37749.t1 AT2G32860 45.909 440 231 6 16 451 137 573 4.77e-137 407
MS.gene37749.t1 AT3G09260 47.005 434 223 6 23 452 84 514 3.96e-136 402
MS.gene37749.t1 AT2G32860 45.455 440 234 5 16 451 137 574 1.55e-135 404
MS.gene37749.t1 AT3G21370 47.235 434 219 7 23 449 82 512 1.70e-135 400
MS.gene37749.t1 AT5G54570 50.263 380 186 2 17 395 74 451 5.17e-135 397
MS.gene37749.t1 AT3G03640 45.958 433 225 6 23 449 84 513 6.92e-134 396
MS.gene37749.t1 AT1G61820 45.662 438 233 5 17 452 74 508 8.65e-134 395
MS.gene37749.t1 AT1G75940 46.682 437 219 8 23 449 86 518 1.21e-133 396
MS.gene37749.t1 AT4G21760 43.111 450 246 6 10 457 90 531 1.20e-132 394
MS.gene37749.t1 AT1G61810 45.205 438 235 5 17 452 77 511 2.04e-132 392
MS.gene37749.t1 AT1G66280 47.816 435 217 7 23 452 85 514 2.97e-132 392
MS.gene37749.t1 AT1G66270 47.586 435 218 7 23 452 85 514 3.65e-132 392
MS.gene37749.t1 AT5G28510 45.558 439 227 7 23 452 88 523 3.08e-131 390
MS.gene37749.t1 AT5G25980 49.471 378 184 6 20 395 95 467 7.45e-130 384
MS.gene37749.t1 AT5G25980 49.471 378 184 6 20 395 95 467 7.45e-130 384
MS.gene37749.t1 AT1G52400 46.560 436 217 9 23 449 88 516 9.52e-130 386
MS.gene37749.t1 AT1G52400 46.560 436 217 9 23 449 88 516 9.52e-130 386
MS.gene37749.t1 AT1G66270 47.356 435 217 8 23 452 85 512 4.01e-129 384
MS.gene37749.t1 AT5G26000 50.396 379 180 4 20 395 83 456 1.63e-126 375
MS.gene37749.t1 AT4G27830 45.000 440 223 7 23 458 71 495 1.77e-126 377
MS.gene37749.t1 AT1G02850 44.884 430 216 6 24 449 74 486 4.08e-126 375
MS.gene37749.t1 AT4G21760 42.222 450 240 7 10 457 90 521 8.85e-126 376
MS.gene37749.t1 AT1G61810 45.368 421 225 5 17 435 77 494 2.23e-125 375
MS.gene37749.t1 AT5G24540 49.468 376 184 5 23 394 81 454 1.23e-124 370
MS.gene37749.t1 AT1G61810 45.255 411 220 5 44 452 4 411 4.67e-123 365
MS.gene37749.t1 AT4G27820 44.725 436 224 6 20 452 65 486 8.36e-122 365
MS.gene37749.t1 AT2G44470 45.479 376 200 4 22 394 77 450 2.73e-121 362
MS.gene37749.t1 AT1G02850 42.605 453 216 7 24 449 74 509 2.89e-121 364
MS.gene37749.t1 AT1G02850 42.731 454 215 8 24 449 74 510 4.30e-120 361
MS.gene37749.t1 AT3G60140 47.875 353 179 4 23 373 75 424 7.88e-120 358
MS.gene37749.t1 AT4G27830 44.076 422 217 7 41 458 1 407 3.42e-117 350
MS.gene37749.t1 AT1G02850 43.023 430 197 7 24 449 74 459 4.65e-115 346
MS.gene37749.t1 AT4G22100 42.760 442 235 7 19 456 63 490 1.07e-114 347
MS.gene37749.t1 AT2G44460 48.626 364 180 6 92 451 1 361 1.19e-114 344
MS.gene37749.t1 AT3G62750 42.593 432 226 7 22 452 67 477 3.85e-114 345
MS.gene37749.t1 AT1G60090 42.529 435 230 8 19 449 65 483 5.28e-114 345
MS.gene37749.t1 AT3G62750 42.593 432 226 7 22 452 93 503 1.28e-113 344
MS.gene37749.t1 AT1G60090 41.458 439 236 8 19 449 65 490 4.95e-112 340
MS.gene37749.t1 AT1G45191 42.466 438 234 8 23 456 74 497 6.55e-112 340
MS.gene37749.t1 AT4G27820 44.096 415 215 6 41 452 1 401 9.51e-112 336
MS.gene37749.t1 AT4G27820 44.096 415 215 6 41 452 1 401 9.51e-112 336
MS.gene37749.t1 AT1G45191 42.237 438 229 7 23 456 74 491 1.34e-111 338
MS.gene37749.t1 AT1G45191 42.273 440 237 8 23 456 74 502 1.73e-111 338
MS.gene37749.t1 AT2G44480 56.343 268 115 2 16 283 109 374 2.35e-111 334
MS.gene37749.t1 AT1G45191 42.273 440 237 8 23 456 86 514 2.98e-111 338
MS.gene37749.t1 AT3G18070 50.915 328 155 5 124 450 99 421 6.80e-111 334
MS.gene37749.t1 AT3G62740 40.553 434 234 8 23 452 69 482 1.15e-107 328
MS.gene37749.t1 AT5G48375 40.000 430 186 7 20 441 74 439 2.89e-106 323
MS.gene37749.t1 AT3G18070 50.637 314 149 5 138 450 1 309 1.88e-104 313
MS.gene37749.t1 AT1G52400 45.000 380 194 8 23 394 88 460 1.91e-104 318
MS.gene37749.t1 AT1G61820 43.478 368 204 4 87 452 4 369 7.75e-104 314
MS.gene37749.t1 AT2G44480 47.869 305 157 2 146 450 2 304 9.57e-104 311
MS.gene37749.t1 AT3G62750 41.162 413 221 7 41 452 1 392 2.03e-103 314
MS.gene37749.t1 AT3G62750 41.162 413 221 7 41 452 1 392 2.03e-103 314
MS.gene37749.t1 AT2G44470 48.084 287 145 3 23 307 78 362 6.86e-101 307
MS.gene37749.t1 AT1G02850 44.199 362 165 5 24 359 74 424 7.24e-100 306
MS.gene37749.t1 AT1G61810 44.638 345 187 4 17 359 77 419 1.64e-98 302
MS.gene37749.t1 AT1G51490 49.363 314 144 7 16 326 60 361 7.23e-97 298
MS.gene37749.t1 AT3G18070 48.185 303 150 5 11 312 67 363 1.31e-96 296
MS.gene37749.t1 AT3G62750 42.287 376 196 6 22 397 93 447 8.96e-94 291
MS.gene37749.t1 AT3G62740 41.223 376 198 7 22 394 68 423 1.90e-91 284
MS.gene37749.t1 AT1G60270 50.000 284 134 3 20 303 67 342 5.03e-90 279
MS.gene37749.t1 AT1G45191 45.246 305 159 4 19 320 70 369 1.24e-88 276
MS.gene37749.t1 AT1G45191 46.575 292 148 4 19 307 70 356 4.82e-87 272
MS.gene37749.t1 AT3G62750 47.253 273 133 3 22 294 67 328 2.18e-85 266
MS.gene37749.t1 AT3G62750 47.253 273 133 3 22 294 67 328 2.18e-85 266
MS.gene37749.t1 AT3G62750 47.253 273 133 3 22 294 93 354 2.82e-84 266
MS.gene37749.t1 AT1G60270 49.808 261 123 3 43 303 3 255 1.08e-80 252
MS.gene37749.t1 AT1G61810 50.885 226 109 2 17 242 77 300 1.99e-75 239
MS.gene37749.t1 AT3G18070 46.721 244 127 3 119 361 94 335 7.87e-71 228
MS.gene37749.t1 AT3G18070 46.667 225 117 3 138 361 1 223 8.78e-65 209
MS.gene37749.t1 AT5G16580 38.390 323 169 9 88 405 2 299 2.75e-52 178
MS.gene37749.t1 AT3G06510 26.636 428 240 15 36 457 159 518 3.31e-28 118
MS.gene37749.t1 AT3G06510 26.906 446 250 18 36 457 159 552 1.01e-27 117

Find 92 sgRNAs with CRISPR-Local

Find 193 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTTTGCTTTAAAGAATT+TGG 0.127350 6.3:+72211856 MS.gene37749:CDS
TTTCTTACTTGGAAGTATTC+TGG 0.217868 6.3:-72211129 None:intergenic
AGGGATGGTGTGAATGTAAA+AGG 0.247212 6.3:+72214418 MS.gene37749:intron
TTGATCTATATCACTGAAAA+TGG 0.261422 6.3:+72213847 MS.gene37749:CDS
TATCAAGTAAAGCTTGTTAA+AGG 0.290667 6.3:+72213230 MS.gene37749:CDS
GCCACTCTATGATACAAAAT+TGG 0.298973 6.3:+72212409 MS.gene37749:CDS
TGATTATGAGTCACTATATA+GGG 0.301091 6.3:-72212018 None:intergenic
GAGGAAGGTCCCAATGAAAA+AGG 0.301739 6.3:-72211665 None:intergenic
GATAACTTTGAATGGGGTTT+AGG 0.303875 6.3:+72214463 MS.gene37749:CDS
AGAGCCATTGATTTCATGTT+TGG 0.306421 6.3:+72212449 MS.gene37749:CDS
GATGTGAGTTACACTATATT+TGG 0.308617 6.3:-72211723 None:intergenic
TGATGAATACCATCGTTATA+AGG 0.309617 6.3:+72210929 MS.gene37749:CDS
GCCAAGCATGCTTATGTTGA+TGG 0.330838 6.3:+72211925 MS.gene37749:CDS
AGCTTAGTGGAGGTGTAAAT+AGG 0.332322 6.3:+72211490 MS.gene37749:CDS
AAATTTCAAAAGGGCAAGAT+AGG 0.333322 6.3:+72212359 MS.gene37749:CDS
TTACACATGCAGGCTGCTTC+AGG 0.335032 6.3:+72213754 MS.gene37749:intron
TTGATTATGAGTCACTATAT+AGG 0.356386 6.3:-72212019 None:intergenic
TGTCTACAAAACTAAGTATC+AGG 0.359104 6.3:+72212068 MS.gene37749:CDS
TTAGGCTACACTTCGAGGTT+TGG 0.361866 6.3:+72214481 MS.gene37749:CDS
TTGGCAATAGAGTAAAGAAT+TGG 0.368448 6.3:+72211875 MS.gene37749:CDS
TGGTAATCGACTCCCTACTA+TGG 0.380262 6.3:-72213195 None:intergenic
ACTTGATATGTTGAAAACTT+TGG 0.387258 6.3:-72213215 None:intergenic
GATGATCAAGGACATCAATA+TGG 0.390761 6.3:+72211079 MS.gene37749:CDS
GCACATACCGTTGGGCCAAT+AGG 0.395361 6.3:-72213580 None:intergenic
CAATCCTTTGCGTATCTTCA+AGG 0.396277 6.3:-72214082 None:intergenic
GCTTAGTGGAGGTGTAAATA+GGG 0.402721 6.3:+72211491 MS.gene37749:CDS
TTCTTCATATATTCAATGTC+CGG 0.405124 6.3:+72210831 None:intergenic
CAACCTCATCAATGAGTTGC+TGG 0.414002 6.3:+72211533 MS.gene37749:CDS
CATTGGTTGATAACTTTGAA+TGG 0.414624 6.3:+72214455 MS.gene37749:CDS
ACACTTGAAGATGAATATAA+TGG 0.421152 6.3:+72211690 MS.gene37749:CDS
AAGTGCATCTGTGTTGTAGC+TGG 0.421551 6.3:-72213333 None:intergenic
ATTGGTTGATAACTTTGAAT+GGG 0.424222 6.3:+72214456 MS.gene37749:CDS
AAACTTGTCAGATAAAATAA+AGG 0.429402 6.3:+72210881 MS.gene37749:CDS
CAGCGCAATGGAATACCTAT+TGG 0.459924 6.3:+72213565 MS.gene37749:CDS
TTATACGCAGAAATTTCAAA+AGG 0.461398 6.3:+72212349 MS.gene37749:intron
AGCTCCATGAGGTCCATAGT+AGG 0.463673 6.3:+72213182 MS.gene37749:CDS
AACAAGTCGTGAATACCCTT+TGG 0.465827 6.3:-72213793 None:intergenic
AAAATAAAGGACAGAAGTAA+TGG 0.467864 6.3:+72210894 MS.gene37749:CDS
TGCCAGGACGAACATCGTCC+AGG 0.472398 6.3:-72211958 None:intergenic
GGATAGTCTCCACTTGTCAA+TGG 0.473914 6.3:-72213158 None:intergenic
GGGGTTTAGGCTACACTTCG+AGG 0.480196 6.3:+72214476 MS.gene37749:CDS
CACCTGGACGATGTTCGTCC+TGG 0.480398 6.3:+72211956 MS.gene37749:CDS
CAACATAAAATAGTTGCATA+TGG 0.481679 6.3:+72214580 MS.gene37749:CDS
ATTGCAGAAGGAAAGCTTAG+TGG 0.495347 6.3:+72211477 MS.gene37749:intron
TCCATCAACATAAGCATGCT+TGG 0.501327 6.3:-72211926 None:intergenic
CCATCCAAACATGAAATCAA+TGG 0.508555 6.3:-72212453 None:intergenic
AATGTGATGGTGCTTTGAAC+CGG 0.510598 6.3:-72210850 None:intergenic
AATCCTTTGCGTATCTTCAA+GGG 0.510860 6.3:-72214081 None:intergenic
ACTATGGACCTCATGGAGCT+TGG 0.514025 6.3:-72213179 None:intergenic
GTTGATGGAAGCTTCGCACC+TGG 0.514214 6.3:+72211940 MS.gene37749:CDS
TGGTTATCAATTTATCCAAA+GGG 0.514428 6.3:+72213778 MS.gene37749:CDS
GGATAACATTAGTGTGTCAC+TGG 0.520216 6.3:+72212381 MS.gene37749:CDS
CCATTGATTTCATGTTTGGA+TGG 0.528755 6.3:+72212453 MS.gene37749:CDS
TATACGCAGAAATTTCAAAA+GGG 0.528876 6.3:+72212350 MS.gene37749:intron
GCTTTCTCAAGAGGGAGTGT+TGG 0.529097 6.3:-72214059 None:intergenic
ATGGTTATCAATTTATCCAA+AGG 0.532166 6.3:+72213777 MS.gene37749:CDS
TTGATGACTTCACTTAACTC+TGG 0.533340 6.3:-72213308 None:intergenic
ATCAATGAGTTGCTGGCCAA+AGG 0.554170 6.3:+72211540 MS.gene37749:CDS
ACTCCCTACTATGGACCTCA+TGG 0.558528 6.3:-72213186 None:intergenic
GCATGCTTGGCGAAGGCCCA+TGG 0.558759 6.3:-72211913 None:intergenic
AAGTATTCTGGACCAAGAGA+TGG 0.559511 6.3:-72211117 None:intergenic
CAATAGGTATTCCATTGCGC+TGG 0.561868 6.3:-72213564 None:intergenic
AACATAAGCATGCTTGGCGA+AGG 0.562738 6.3:-72211920 None:intergenic
TGGCAAAACTTGAATTGCAC+CGG 0.571841 6.3:+72211976 MS.gene37749:CDS
CTTCAAGGGCTTTCTCAAGA+GGG 0.573600 6.3:-72214067 None:intergenic
TCTTCAAGGGCTTTCTCAAG+AGG 0.573816 6.3:-72214068 None:intergenic
GCTCCATGAGGTCCATAGTA+GGG 0.576319 6.3:+72213183 MS.gene37749:CDS
GTTTAATCCAATAAAATCAA+AGG 0.577644 6.3:-72213255 None:intergenic
AATTTCAAAAGGGCAAGATA+GGG 0.579565 6.3:+72212360 MS.gene37749:CDS
GGGATGGTGTGAATGTAAAA+GGG 0.580656 6.3:+72214419 MS.gene37749:intron
TGGCCAGCAACTCATTGATG+AGG 0.580800 6.3:-72211536 None:intergenic
GGAAGATGTTGAGATGATCA+AGG 0.589270 6.3:+72211067 MS.gene37749:intron
TTGGTTGATAACTTTGAATG+GGG 0.590135 6.3:+72214457 MS.gene37749:CDS
AGTGCATCTGTGTTGTAGCT+GGG 0.591010 6.3:-72213332 None:intergenic
CATCTTCAAGTGTCTGAGGA+AGG 0.591440 6.3:-72211680 None:intergenic
GATCACACTGAATGAACCAT+GGG 0.595444 6.3:+72211897 MS.gene37749:CDS
TATTCATCTTCAAGTGTCTG+AGG 0.598112 6.3:-72211684 None:intergenic
AGTGGAGGTGTAAATAGGGA+AGG 0.601364 6.3:+72211495 MS.gene37749:CDS
AACATTAGTGTGTCACTGGA+CGG 0.604605 6.3:+72212385 MS.gene37749:CDS
TTCAGTGGCAGAATCTCCAC+CGG 0.611444 6.3:-72211995 None:intergenic
ACATGCAGGCTGCTTCAGGA+TGG 0.613410 6.3:+72213758 MS.gene37749:intron
TGGAATACCTATTGGCCCAA+CGG 0.614932 6.3:+72213573 MS.gene37749:CDS
GGATCACACTGAATGAACCA+TGG 0.617345 6.3:+72211896 MS.gene37749:CDS
CAAAACTTGAATTGCACCGG+TGG 0.620786 6.3:+72211979 MS.gene37749:CDS
AGTCACTATATAGGGTTCAG+TGG 0.627438 6.3:-72212010 None:intergenic
ATAACGATGGTATTCATCAA+CGG 0.630026 6.3:-72210925 None:intergenic
AGTTTAGCAGTAGAATGTGA+TGG 0.640780 6.3:-72210863 None:intergenic
TATATGGATCCATTGACAAG+TGG 0.641460 6.3:+72213149 MS.gene37749:CDS
AGTATTGAACCTTATAACGA+TGG 0.651540 6.3:-72210938 None:intergenic
AAGCCCTTGAAGATACGCAA+AGG 0.663714 6.3:+72214078 MS.gene37749:CDS
GCAGAAGGAAAGCTTAGTGG+AGG 0.668340 6.3:+72211480 MS.gene37749:intron
GAGACTATCCAAGCTCCATG+AGG 0.724713 6.3:+72213171 MS.gene37749:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTATAATTATTATAAAT+TGG + chr6.3:72211241-72211260 MS.gene37749:intron 0.0%
!! AAATAATAAATATAGTGTAT+TGG - chr6.3:72213878-72213897 None:intergenic 10.0%
!! ACATTAAAAAAAAAATCTTA+TGG - chr6.3:72211206-72211225 None:intergenic 10.0%
!! TTGTAAAAAAGTAATTATAA+AGG + chr6.3:72211333-72211352 MS.gene37749:intron 10.0%
!!! ATGTTTTTAATTTTTTTCAA+AGG + chr6.3:72213704-72213723 MS.gene37749:intron 10.0%
!!! TACAATTACATTTTTTTTTT+AGG + chr6.3:72213487-72213506 MS.gene37749:intron 10.0%
!!! TATATACTAAATTTTGAATA+GGG + chr6.3:72213938-72213957 MS.gene37749:intron 10.0%
!!! TATGATATTTGATTATATTT+TGG - chr6.3:72211757-72211776 None:intergenic 10.0%
!!! TCATTAATTTAACTTTTTTT+TGG - chr6.3:72214199-72214218 None:intergenic 10.0%
!!! TGTTTTTAATTTTTTTCAAA+GGG + chr6.3:72213705-72213724 MS.gene37749:intron 10.0%
!!! TTATATACTAAATTTTGAAT+AGG + chr6.3:72213937-72213956 MS.gene37749:intron 10.0%
!! AAAAAAAAAATCTTATGGAA+AGG - chr6.3:72211201-72211220 None:intergenic 15.0%
!! CAATTTCTATTTATATACAA+AGG + chr6.3:72212863-72212882 MS.gene37749:intron 15.0%
!! TAATCAAATATCATAAAGTT+AGG + chr6.3:72211762-72211781 MS.gene37749:intron 15.0%
!! TATAAATTAAAGGAAAGTTT+AGG - chr6.3:72212334-72212353 None:intergenic 15.0%
!! TATGAACCTTAAATTATATA+TGG + chr6.3:72212489-72212508 MS.gene37749:intron 15.0%
!! TATTGTGAATCTATATATAT+AGG + chr6.3:72214017-72214036 MS.gene37749:intron 15.0%
!! TATTTAAAAAAATGTATTGC+AGG + chr6.3:72213126-72213145 MS.gene37749:intron 15.0%
!! TTATCGAAAAAAATTGTTTA+TGG + chr6.3:72212636-72212655 MS.gene37749:intron 15.0%
!!! TAATTTTTGTTATGTTTTGA+GGG - chr6.3:72214158-72214177 None:intergenic 15.0%
!!! TGATATTATATTTTTTTCAC+AGG + chr6.3:72213541-72213560 MS.gene37749:intron 15.0%
!!! TTAATTTTTGTTATGTTTTG+AGG - chr6.3:72214159-72214178 None:intergenic 15.0%
!! AAACCTTATTATATGTTCTA+AGG - chr6.3:72211293-72211312 None:intergenic 20.0%
!! AAACTTGTCAGATAAAATAA+AGG + chr6.3:72210881-72210900 MS.gene37749:CDS 20.0%
!! AAGAATTAAATCAATTCACA+AGG + chr6.3:72212111-72212130 MS.gene37749:intron 20.0%
!! AATTTCTGCGTATAAATTAA+AGG - chr6.3:72212344-72212363 None:intergenic 20.0%
!! ACTAATCACATGTAAAAATA+TGG + chr6.3:72212698-72212717 MS.gene37749:intron 20.0%
!! ATAGGTTAATTAGATAAAGA+AGG - chr6.3:72214354-72214373 None:intergenic 20.0%
!! CTTACTAATATACAATTTGA+CGG + chr6.3:72213984-72214003 MS.gene37749:intron 20.0%
!! GTTTAATCCAATAAAATCAA+AGG - chr6.3:72213258-72213277 None:intergenic 20.0%
!! TCAATTTACCTTAAAAATTG+TGG + chr6.3:72212747-72212766 MS.gene37749:intron 20.0%
!! TGAATCTATATATATAGGTA+TGG + chr6.3:72214022-72214041 MS.gene37749:intron 20.0%
!! TGAGTTCCATATATAATTTA+AGG - chr6.3:72212498-72212517 None:intergenic 20.0%
!!! ATAGATTTTCGAATTTAGAT+TGG + chr6.3:72212179-72212198 MS.gene37749:intron 20.0%
!!! ATTGTTGACATTTTTTTTAG+AGG + chr6.3:72212584-72212603 MS.gene37749:intron 20.0%
!!! TGAAATAACCACAATTTTTA+AGG - chr6.3:72212758-72212777 None:intergenic 20.0%
!!! TGATTATATTTTGGTCATAA+GGG - chr6.3:72211748-72211767 None:intergenic 20.0%
!!! TTGATTATATTTTGGTCATA+AGG - chr6.3:72211749-72211768 None:intergenic 20.0%
! AAAAATGTATTGCAGGTATA+TGG + chr6.3:72213133-72213152 MS.gene37749:intron 25.0%
! AAAATAAAGGACAGAAGTAA+TGG + chr6.3:72210894-72210913 MS.gene37749:CDS 25.0%
! AATTATAACCACATGTTTGA+AGG + chr6.3:72213042-72213061 MS.gene37749:intron 25.0%
! ACACTTGAAGATGAATATAA+TGG + chr6.3:72211690-72211709 MS.gene37749:CDS 25.0%
! ACTTGATATGTTGAAAACTT+TGG - chr6.3:72213218-72213237 None:intergenic 25.0%
! AGACATTATTGATATAATGC+AGG + chr6.3:72211046-72211065 MS.gene37749:intron 25.0%
! ATGGTTATCAATTTATCCAA+AGG + chr6.3:72213777-72213796 MS.gene37749:CDS 25.0%
! CAACATAAAATAGTTGCATA+TGG + chr6.3:72214580-72214599 MS.gene37749:CDS 25.0%
! CTAGACATTAAACTCTTAAA+GGG + chr6.3:72212533-72212552 MS.gene37749:intron 25.0%
! GGTTAACTTAGTTAATTAGA+TGG + chr6.3:72212719-72212738 MS.gene37749:intron 25.0%
! GTAAATAGATTAGTGAATAG+TGG - chr6.3:72212977-72212996 None:intergenic 25.0%
! TACATATGGTAATAGTTAGA+GGG - chr6.3:72211813-72211832 None:intergenic 25.0%
! TAGACATTAAACTCTTAAAG+GGG + chr6.3:72212534-72212553 MS.gene37749:intron 25.0%
! TATACGCAGAAATTTCAAAA+GGG + chr6.3:72212350-72212369 MS.gene37749:intron 25.0%
! TATATATACACACACACAAT+AGG - chr6.3:72214372-72214391 None:intergenic 25.0%
! TCAATTGTATCTATCAATGT+AGG + chr6.3:72211624-72211643 MS.gene37749:intron 25.0%
! TGATTATGAGTCACTATATA+GGG - chr6.3:72212021-72212040 None:intergenic 25.0%
! TGGTTATCAATTTATCCAAA+GGG + chr6.3:72213778-72213797 MS.gene37749:CDS 25.0%
! TGTCCTTAGAACATATAATA+AGG + chr6.3:72211287-72211306 MS.gene37749:intron 25.0%
! TTATACGCAGAAATTTCAAA+AGG + chr6.3:72212349-72212368 MS.gene37749:intron 25.0%
! TTGATCTATATCACTGAAAA+TGG + chr6.3:72213847-72213866 MS.gene37749:CDS 25.0%
! TTGATTATGAGTCACTATAT+AGG - chr6.3:72212022-72212041 None:intergenic 25.0%
! TTTCTTCTCTAATACATCAA+AGG + chr6.3:72213462-72213481 MS.gene37749:intron 25.0%
!! TAAGAGACATTTTCTTCTTT+TGG + chr6.3:72211159-72211178 MS.gene37749:intron 25.0%
!! TTTTCAGTGATATAGATCAA+TGG - chr6.3:72213847-72213866 None:intergenic 25.0%
!!! AAAGGATCCTTTGATTTTAT+TGG + chr6.3:72213248-72213267 MS.gene37749:CDS 25.0%
!!! ACATTTTTGGATATCTTTTG+AGG - chr6.3:72214534-72214553 None:intergenic 25.0%
!!! ATGTATCCAATTTTTTTACC+AGG + chr6.3:72214398-72214417 MS.gene37749:intron 25.0%
!!! ATTGGTTGATAACTTTGAAT+GGG + chr6.3:72214456-72214475 MS.gene37749:CDS 25.0%
!!! TATCAAGTAAAGCTTGTTAA+AGG + chr6.3:72213230-72213249 MS.gene37749:CDS 25.0%
!!! TGTATCCAATTTTTTTACCA+GGG + chr6.3:72214399-72214418 MS.gene37749:intron 25.0%
!!! TTTTGTTACCCTTTTTCATT+GGG + chr6.3:72211656-72211675 MS.gene37749:CDS 25.0%
AAATTTCAAAAGGGCAAGAT+AGG + chr6.3:72212359-72212378 MS.gene37749:CDS 30.0%
AATACTTTCCTAATTGCAGA+AGG + chr6.3:72211465-72211484 MS.gene37749:intron 30.0%
AATTTCAAAAGGGCAAGATA+GGG + chr6.3:72212360-72212379 MS.gene37749:CDS 30.0%
ATAACGATGGTATTCATCAA+CGG - chr6.3:72210928-72210947 None:intergenic 30.0%
ATACTTCCAAGTAAGAAACT+AGG + chr6.3:72211134-72211153 MS.gene37749:intron 30.0%
CAATGAAAAAGGGTAACAAA+AGG - chr6.3:72211657-72211676 None:intergenic 30.0%
CCTAGACATTAAACTCTTAA+AGG + chr6.3:72212532-72212551 MS.gene37749:intron 30.0%
CTACATATGGTAATAGTTAG+AGG - chr6.3:72211814-72211833 None:intergenic 30.0%
CTCTAACTATTACCATATGT+AGG + chr6.3:72211812-72211831 MS.gene37749:intron 30.0%
GATATGGGTGTTTAAAAAAG+TGG - chr6.3:72212666-72212685 None:intergenic 30.0%
GATGTGAGTTACACTATATT+TGG - chr6.3:72211726-72211745 None:intergenic 30.0%
TACTTCCAAGTAAGAAACTA+GGG + chr6.3:72211135-72211154 MS.gene37749:intron 30.0%
TCGAAAATCATTCCTACATA+TGG - chr6.3:72211827-72211846 None:intergenic 30.0%
TGATGAATACCATCGTTATA+AGG + chr6.3:72210929-72210948 MS.gene37749:CDS 30.0%
TGTCTACAAAACTAAGTATC+AGG + chr6.3:72212068-72212087 MS.gene37749:CDS 30.0%
TTGGCAATAGAGTAAAGAAT+TGG + chr6.3:72211875-72211894 MS.gene37749:CDS 30.0%
! ACACACAAATTAAAGCATCA+TGG - chr6.3:72210978-72210997 None:intergenic 30.0%
! AGTATTGAACCTTATAACGA+TGG - chr6.3:72210941-72210960 None:intergenic 30.0%
! AGTTCATATTTGATGACCTT+TGG - chr6.3:72211559-72211578 None:intergenic 30.0%
! CCTTTAAGAGTTTAATGTCT+AGG - chr6.3:72212535-72212554 None:intergenic 30.0%
! CTTATAGATTTTCCATCTCT+TGG + chr6.3:72211105-72211124 MS.gene37749:CDS 30.0%
! TCCAATTTTGTATCATAGAG+TGG - chr6.3:72212413-72212432 None:intergenic 30.0%
!! CATTGGTTGATAACTTTGAA+TGG + chr6.3:72214455-72214474 MS.gene37749:CDS 30.0%
!! CTTTTGTTACCCTTTTTCAT+TGG + chr6.3:72211655-72211674 MS.gene37749:CDS 30.0%
!! GAGCTTTGCTTTAAAGAATT+TGG + chr6.3:72211856-72211875 MS.gene37749:CDS 30.0%
!! TAGTGAATAGTGGATTACTT+AGG - chr6.3:72212967-72212986 None:intergenic 30.0%
!! TTGGTTGATAACTTTGAATG+GGG + chr6.3:72214457-72214476 MS.gene37749:CDS 30.0%
!! TTTCTTACTTGGAAGTATTC+TGG - chr6.3:72211132-72211151 None:intergenic 30.0%
!!! ATGTAAAAGGGTATTTTGCA+TGG + chr6.3:72214431-72214450 MS.gene37749:CDS 30.0%
!!! CTTAGTTTTGTAGACATTGA+CGG - chr6.3:72212064-72212083 None:intergenic 30.0%
AATCCTTTGCGTATCTTCAA+GGG - chr6.3:72214084-72214103 None:intergenic 35.0%
ACCATCCCTGGTAAAAAAAT+TGG - chr6.3:72214407-72214426 None:intergenic 35.0%
AGTGATCAATCTGGTGATAT+GGG - chr6.3:72212681-72212700 None:intergenic 35.0%
AGTTTAGCAGTAGAATGTGA+TGG - chr6.3:72210866-72210885 None:intergenic 35.0%
ATATTTCAACATGTGCCCTA+AGG + chr6.3:72211405-72211424 MS.gene37749:intron 35.0%
ATCCAAAAATGTCAGCTATC+TGG + chr6.3:72214542-72214561 MS.gene37749:CDS 35.0%
CATGTGATTAGTGATCAATC+TGG - chr6.3:72212690-72212709 None:intergenic 35.0%
CCATCCAAACATGAAATCAA+TGG - chr6.3:72212456-72212475 None:intergenic 35.0%
CTACACTATATTACACATGC+AGG + chr6.3:72213744-72213763 MS.gene37749:intron 35.0%
GATAACTTTGAATGGGGTTT+AGG + chr6.3:72214463-72214482 MS.gene37749:CDS 35.0%
GATGATCAAGGACATCAATA+TGG + chr6.3:72211079-72211098 MS.gene37749:CDS 35.0%
GCCACTCTATGATACAAAAT+TGG + chr6.3:72212409-72212428 MS.gene37749:CDS 35.0%
TAAGCTTTCCTTCTGCAATT+AGG - chr6.3:72211476-72211495 None:intergenic 35.0%
TAGTGATCAATCTGGTGATA+TGG - chr6.3:72212682-72212701 None:intergenic 35.0%
TATATGGATCCATTGACAAG+TGG + chr6.3:72213149-72213168 MS.gene37749:CDS 35.0%
TATTCATCTTCAAGTGTCTG+AGG - chr6.3:72211687-72211706 None:intergenic 35.0%
TATTGTGCAAGTAATCACAC+AGG + chr6.3:72212904-72212923 MS.gene37749:intron 35.0%
! AAATGCTAACTTGTGCCTTA+GGG - chr6.3:72211423-72211442 None:intergenic 35.0%
! AACCAGATAGCTGACATTTT+TGG - chr6.3:72214547-72214566 None:intergenic 35.0%
! CAATGAGCTACACCATTTTA+TGG - chr6.3:72212568-72212587 None:intergenic 35.0%
! TTGATGACTTCACTTAACTC+TGG - chr6.3:72213311-72213330 None:intergenic 35.0%
!! ACTCACTTTTGAATACTCTC+TGG + chr6.3:72212248-72212267 MS.gene37749:intron 35.0%
!! AGAGCCATTGATTTCATGTT+TGG + chr6.3:72212449-72212468 MS.gene37749:CDS 35.0%
!! CCATTGATTTCATGTTTGGA+TGG + chr6.3:72212453-72212472 MS.gene37749:CDS 35.0%
!!! TCCAATTTTTTTACCAGGGA+TGG + chr6.3:72214403-72214422 MS.gene37749:intron 35.0%
AACAAGTCGTGAATACCCTT+TGG - chr6.3:72213796-72213815 None:intergenic 40.0%
AAGGTGCATCTCTTAGACTT+GGG + chr6.3:72212130-72212149 MS.gene37749:intron 40.0%
AAGTATTCTGGACCAAGAGA+TGG - chr6.3:72211120-72211139 None:intergenic 40.0%
AGGAAGGTCCCAATGAAAAA+GGG - chr6.3:72211667-72211686 None:intergenic 40.0%
AGGGATGGTGTGAATGTAAA+AGG + chr6.3:72214418-72214437 MS.gene37749:intron 40.0%
AGTCACTATATAGGGTTCAG+TGG - chr6.3:72212013-72212032 None:intergenic 40.0%
ATTCTCATGCACATACCGTT+GGG - chr6.3:72213591-72213610 None:intergenic 40.0%
ATTGCAGAAGGAAAGCTTAG+TGG + chr6.3:72211477-72211496 MS.gene37749:intron 40.0%
CAATCCTTTGCGTATCTTCA+AGG - chr6.3:72214085-72214104 None:intergenic 40.0%
CTAACATTCACTCTTCTGCT+AGG + chr6.3:72213665-72213684 MS.gene37749:intron 40.0%
CTCTCGCTACATAAACTTGT+TGG - chr6.3:72212217-72212236 None:intergenic 40.0%
CTTAGCCCTAGTTTCTTACT+TGG - chr6.3:72211143-72211162 None:intergenic 40.0%
GATCACACTGAATGAACCAT+GGG + chr6.3:72211897-72211916 MS.gene37749:CDS 40.0%
GGAAGATGTTGAGATGATCA+AGG + chr6.3:72211067-72211086 MS.gene37749:intron 40.0%
GGATAACATTAGTGTGTCAC+TGG + chr6.3:72212381-72212400 MS.gene37749:CDS 40.0%
GGGATGGTGTGAATGTAAAA+GGG + chr6.3:72214419-72214438 MS.gene37749:intron 40.0%
TATTCTCATGCACATACCGT+TGG - chr6.3:72213592-72213611 None:intergenic 40.0%
TCACAACACCTTCAAACATG+TGG - chr6.3:72213053-72213072 None:intergenic 40.0%
TCCATCAACATAAGCATGCT+TGG - chr6.3:72211929-72211948 None:intergenic 40.0%
TGGCAAAACTTGAATTGCAC+CGG + chr6.3:72211976-72211995 MS.gene37749:CDS 40.0%
! AACATTAGTGTGTCACTGGA+CGG + chr6.3:72212385-72212404 MS.gene37749:CDS 40.0%
! AATGTGATGGTGCTTTGAAC+CGG - chr6.3:72210853-72210872 None:intergenic 40.0%
! AGCTTAGTGGAGGTGTAAAT+AGG + chr6.3:72211490-72211509 MS.gene37749:CDS 40.0%
! GAAATGCTAACTTGTGCCTT+AGG - chr6.3:72211424-72211443 None:intergenic 40.0%
! GCTTAGTGGAGGTGTAAATA+GGG + chr6.3:72211491-72211510 MS.gene37749:CDS 40.0%
! TTTTACATTCACACCATCCC+TGG - chr6.3:72214419-72214438 None:intergenic 40.0%
!! AGGGTATTTTGCATGGTCAT+TGG + chr6.3:72214438-72214457 MS.gene37749:CDS 40.0%
AACATAAGCATGCTTGGCGA+AGG - chr6.3:72211923-72211942 None:intergenic 45.0%
AAGCCCTTGAAGATACGCAA+AGG + chr6.3:72214078-72214097 MS.gene37749:CDS 45.0%
AAGTGCATCTGTGTTGTAGC+TGG - chr6.3:72213336-72213355 None:intergenic 45.0%
AGTGCATCTGTGTTGTAGCT+GGG - chr6.3:72213335-72213354 None:intergenic 45.0%
ATCAATGAGTTGCTGGCCAA+AGG + chr6.3:72211540-72211559 MS.gene37749:CDS 45.0%
CAAAACTTGAATTGCACCGG+TGG + chr6.3:72211979-72211998 MS.gene37749:CDS 45.0%
CAACCTCATCAATGAGTTGC+TGG + chr6.3:72211533-72211552 MS.gene37749:CDS 45.0%
CAAGGTGCATCTCTTAGACT+TGG + chr6.3:72212129-72212148 MS.gene37749:intron 45.0%
CAATAGGTATTCCATTGCGC+TGG - chr6.3:72213567-72213586 None:intergenic 45.0%
CAGCGCAATGGAATACCTAT+TGG + chr6.3:72213565-72213584 MS.gene37749:CDS 45.0%
CATCTTCAAGTGTCTGAGGA+AGG - chr6.3:72211683-72211702 None:intergenic 45.0%
CTTCAAGGGCTTTCTCAAGA+GGG - chr6.3:72214070-72214089 None:intergenic 45.0%
GAGGAAGGTCCCAATGAAAA+AGG - chr6.3:72211668-72211687 None:intergenic 45.0%
GCCAAGCATGCTTATGTTGA+TGG + chr6.3:72211925-72211944 MS.gene37749:CDS 45.0%
GGATAGTCTCCACTTGTCAA+TGG - chr6.3:72213161-72213180 None:intergenic 45.0%
GGATCACACTGAATGAACCA+TGG + chr6.3:72211896-72211915 MS.gene37749:CDS 45.0%
TCTTCAAGGGCTTTCTCAAG+AGG - chr6.3:72214071-72214090 None:intergenic 45.0%
TGGAATACCTATTGGCCCAA+CGG + chr6.3:72213573-72213592 MS.gene37749:CDS 45.0%
TTAGGCTACACTTCGAGGTT+TGG + chr6.3:72214481-72214500 MS.gene37749:CDS 45.0%
! AGTGGAGGTGTAAATAGGGA+AGG + chr6.3:72211495-72211514 MS.gene37749:CDS 45.0%
! TGGTAATCGACTCCCTACTA+TGG - chr6.3:72213198-72213217 None:intergenic 45.0%
!! GGTGCAATTCAAGTTTTGCC+AGG - chr6.3:72211977-72211996 None:intergenic 45.0%
ACTATGGACCTCATGGAGCT+TGG - chr6.3:72213182-72213201 None:intergenic 50.0%
ACTCCCTACTATGGACCTCA+TGG - chr6.3:72213189-72213208 None:intergenic 50.0%
AGCTCCATGAGGTCCATAGT+AGG + chr6.3:72213182-72213201 MS.gene37749:CDS 50.0%
GAGACTATCCAAGCTCCATG+AGG + chr6.3:72213171-72213190 MS.gene37749:CDS 50.0%
GCAGAAGGAAAGCTTAGTGG+AGG + chr6.3:72211480-72211499 MS.gene37749:intron 50.0%
GCTCCATGAGGTCCATAGTA+GGG + chr6.3:72213183-72213202 MS.gene37749:CDS 50.0%
GGGGAACGCTGACCATAAAA+TGG + chr6.3:72212553-72212572 MS.gene37749:intron 50.0%
TGGCCAGCAACTCATTGATG+AGG - chr6.3:72211539-72211558 None:intergenic 50.0%
TTACACATGCAGGCTGCTTC+AGG + chr6.3:72213754-72213773 MS.gene37749:intron 50.0%
TTCAGTGGCAGAATCTCCAC+CGG - chr6.3:72211998-72212017 None:intergenic 50.0%
! GCTTTCTCAAGAGGGAGTGT+TGG - chr6.3:72214062-72214081 None:intergenic 50.0%
! TTTTTCACAGGCCAGCGCAA+TGG + chr6.3:72213553-72213572 MS.gene37749:intron 50.0%
ACATGCAGGCTGCTTCAGGA+TGG + chr6.3:72213758-72213777 MS.gene37749:intron 55.0%
GCACATACCGTTGGGCCAAT+AGG - chr6.3:72213583-72213602 None:intergenic 55.0%
GGGGTTTAGGCTACACTTCG+AGG + chr6.3:72214476-72214495 MS.gene37749:CDS 55.0%
! GTTGATGGAAGCTTCGCACC+TGG + chr6.3:72211940-72211959 MS.gene37749:CDS 55.0%
CACCTGGACGATGTTCGTCC+TGG + chr6.3:72211956-72211975 MS.gene37749:CDS 60.0%
TGCCAGGACGAACATCGTCC+AGG - chr6.3:72211961-72211980 None:intergenic 60.0%
GCATGCTTGGCGAAGGCCCA+TGG - chr6.3:72211916-72211935 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 72210846 72214615 72210846 ID=MS.gene37749
chr6.3 mRNA 72210846 72214615 72210846 ID=MS.gene37749.t1;Parent=MS.gene37749
chr6.3 exon 72210846 72210950 72210846 ID=MS.gene37749.t1.exon1;Parent=MS.gene37749.t1
chr6.3 CDS 72210846 72210950 72210846 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72211068 72211143 72211068 ID=MS.gene37749.t1.exon2;Parent=MS.gene37749.t1
chr6.3 CDS 72211068 72211143 72211068 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72211484 72211561 72211484 ID=MS.gene37749.t1.exon3;Parent=MS.gene37749.t1
chr6.3 CDS 72211484 72211561 72211484 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72211646 72211733 72211646 ID=MS.gene37749.t1.exon4;Parent=MS.gene37749.t1
chr6.3 CDS 72211646 72211733 72211646 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72211834 72212089 72211834 ID=MS.gene37749.t1.exon5;Parent=MS.gene37749.t1
chr6.3 CDS 72211834 72212089 72211834 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72212359 72212474 72212359 ID=MS.gene37749.t1.exon6;Parent=MS.gene37749.t1
chr6.3 CDS 72212359 72212474 72212359 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72213148 72213368 72213148 ID=MS.gene37749.t1.exon7;Parent=MS.gene37749.t1
chr6.3 CDS 72213148 72213368 72213148 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72213563 72213594 72213563 ID=MS.gene37749.t1.exon8;Parent=MS.gene37749.t1
chr6.3 CDS 72213563 72213594 72213563 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72213766 72213868 72213766 ID=MS.gene37749.t1.exon9;Parent=MS.gene37749.t1
chr6.3 CDS 72213766 72213868 72213766 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72214039 72214147 72214039 ID=MS.gene37749.t1.exon10;Parent=MS.gene37749.t1
chr6.3 CDS 72214039 72214147 72214039 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
chr6.3 exon 72214420 72214615 72214420 ID=MS.gene37749.t1.exon11;Parent=MS.gene37749.t1
chr6.3 CDS 72214420 72214615 72214420 ID=cds.MS.gene37749.t1;Parent=MS.gene37749.t1
Gene Sequence

>MS.gene37749

ATGTCCGGTTCAAAGCACCATCACATTCTACTGCTAAACTTGTCAGATAAAATAAAGGACAGAAGTAATGGAGACATAGCCGTTGATGAATACCATCGTTATAAGGTTCAATACTATGCTCTAACATGTCCATGATGCTTTAATTTGTGTGTTAATAATATTAATATAATAATAAAAACATTGATGCTAGAGCATAATTAAGACATTATTGATATAATGCAGGAAGATGTTGAGATGATCAAGGACATCAATATGGATGCTTATAGATTTTCCATCTCTTGGTCCAGAATACTTCCAAGTAAGAAACTAGGGCTAAGAGACATTTTCTTCTTTTGGAAACTTTTGAACATTACCTTTCCATAAGATTTTTTTTTTAATGTTTATAATTGATAATAAATTTATAATTATTATAAATTGGCAAATTCTTATCATGCTAACATGTGTCCTTAGAACATATAATAAGGTTTTTACAAGTAGTAAATATTTATTGTAAAAAAGTAATTATAAAGGACTTGAAAAATAAATTTGCACAATTTTCAATACAGAATTTTCATTAAAAATATTTCAACATGTGCCCTAAGGCACAAGTTAGCATTTCTCAATACTTATTTACGTGTTGAATACTTTCCTAATTGCAGAAGGAAAGCTTAGTGGAGGTGTAAATAGGGAAGGAATTAAGTATTACAACAACCTCATCAATGAGTTGCTGGCCAAAGGTCATCAAATATGAACTTAATGTTTGTCTTTTTTGTTTTCAATTATTTTTGTCTAAAATATTTCAATTGTATCTATCAATGTAGGTCTTCAACCTTTTGTTACCCTTTTTCATTGGGACCTTCCTCAGACACTTGAAGATGAATATAATGGCTTTTTAAGTCCAAATATAGTGTAACTCACATCCCTTATGACCAAAATATAATCAAATATCATAAAGTTAGGCATATCATCATTCATCATGTGTTTTCCCTCTAACTATTACCATATGTAGGAATGATTTTCGAGACTATGCAGAGCTTTGCTTTAAAGAATTTGGCAATAGAGTAAAGAATTGGATCACACTGAATGAACCATGGGCCTTCGCCAAGCATGCTTATGTTGATGGAAGCTTCGCACCTGGACGATGTTCGTCCTGGCAAAACTTGAATTGCACCGGTGGAGATTCTGCCACTGAACCCTATATAGTGACTCATAATCAAATACTTGCTCATGCATCTGCCGTCAATGTCTACAAAACTAAGTATCAGGTATTATTTTATTTTAACTAAAAGAATTAAATCAATTCACAAGGTGCATCTCTTAGACTTGGGTTATGCGCTATATATGATAGTGTATGATAGATTTTCGAATTTAGATTGGACTGAAATCAATCCAACAAGTTTATGTAGCGAGAGTTGTTAGCAACACTCACTTTTGAATACTCTCTGGCACTCACTCATATTCTAACACTAAGTGTTTCTTTAAACATTTAATTTACTCACATTGAGACCTAAACTTTCCTTTAATTTATACGCAGAAATTTCAAAAGGGCAAGATAGGGATAACATTAGTGTGTCACTGGACGGTGCCACTCTATGATACAAAATTGGATCATCATGCTTCACAAAGAGCCATTGATTTCATGTTTGGATGGTAATTAACTACTTTATGAACCTTAAATTATATATGGAACTCAACTACATTAATTATCCTAGACATTAAACTCTTAAAGGGGAACGCTGACCATAAAATGGTGTAGCTCATTGTTGACATTTTTTTTAGAGGCGCATTGTTGACATTTTTATTTATTATATTTATCGAAAAAAATTGTTTATGGACATCCACTTTTTTAAACACCCATATCACCAGATTGATCACTAATCACATGTAAAAATATGGTTAACTTAGTTAATTAGATGGTTAGTTCAATTTACCTTAAAAATTGTGGTTATTTCATGTAGTTGAATTAATAACAATTTGACTATAAATTAATATCATGATTGAATGAAATAGTAAGTTTATTGATTGAATATTGAATGTACAATTTCTATTTATATACAAAGGAGACTCTACACGCTAGCTTATTGTGCAAGTAATCACACAGGATTACTAAACTAAACTAGCTAACTAGATAACTTGTTGCCTAAGTAATCCACTATTCACTAATCTATTTACTAGTATCTTCATTTGCAATAATTAAGTTAATCATCTATTCAATTGAATTATAACCACATGTTTGAAGGTGTTGTGAGAATGTGCAAAAAGAAAGTGTTGTCTATGTATCATTACTCTTATCAAAATAGATATTTAAAAAAATGTATTGCAGGTATATGGATCCATTGACAAGTGGAGACTATCCAAGCTCCATGAGGTCCATAGTAGGGAGTCGATTACCAAAGTTTTCAACATATCAAGTAAAGCTTGTTAAAGGATCCTTTGATTTTATTGGATTAAACTATTACACTTCTCATTATGCAACTAATGCACCAGAGTTAAGTGAAGTCATCAAGCCCAGCTACAACACAGATGCACTTGTTAGTTTTACAAGTAAGTGTGTTTAATGATGACTCATGAAATTTTTAGTAATATAACACACTTTAATTACTATCACATCTTAAACGTGTGACAAAATGAAAAAAATTTCTTCTCTAATACATCAAAGGTATACAATTACATTTTTTTTTTAGGAATTATATATATTTTTGTTAGCAATAGATTATGATATTATATTTTTTTCACAGGCCAGCGCAATGGAATACCTATTGGCCCAACGGTATGTGCATGAGAATATAATTGATATGAGAAATGCTAAGAACATTCTCTTTCTAGCACTCTCTTTAACACTAACATTCACTCTTCTGCTAGGTGAAACTCATTAGTTTATGTTTTTAATTTTTTTCAAAGGGTATTTACATTGTAGCTCTACACTATATTACACATGCAGGCTGCTTCAGGATGGTTATCAATTTATCCAAAGGGTATTCACGACTTGTTGATCTACACTAAAATAAAGTATAACAATCCATTGATCTATATCACTGAAAATGGTAATTCCAATACACTATATTTATTATTTATTTTCAATCTATTTCTTTAAGCAAAAATTAAAATTTGATTATATACTAAATTTTGAATAGGGAAAATGTGCTGATGTATTTATTTCTTACTAATATACAATTTGACGGTAAACAACTATATTGTGAATCTATATATATAGGTATGGATGACTTTAATGATCCAACACTCCCTCTTGAGAAAGCCCTTGAAGATACGCAAAGGATTGATTACTATTATGATCATCTCTACTATCTTCAAACTGCAATAAAGTATGTGCCCTCAAAACATAACAAAAATTAAATTAATGATTTTTTTGACCAAAAAAAAGTTAAATTAATGATAGAAATGTATAGAACAATAATATAAATTTTGTCTCTAATTCTCTATATAGTTATGACTAAACTCGTGACACATTTTATTTTTTTCTAAATAGAAATTTAGATACTAATTTTATTTTTGTATAGTGCAAATTCCTTCTTTATCTAATTAACCTATTGTGTGTGTGTATATATATGTTTAATGTATCCAATTTTTTTACCAGGGATGGTGTGAATGTAAAAGGGTATTTTGCATGGTCATTGGTTGATAACTTTGAATGGGGTTTAGGCTACACTTCGAGGTTTGGAATATACTTCATAGATTACAATAATGACCTCAAAAGATATCCAAAAATGTCAGCTATCTGGTTTAAGAATTTTCTACAACATAAAATAGTTGCATATGGTGATTCACGCTAA

Protein sequence

>MS.gene37749.t1

MSGSKHHHILLLNLSDKIKDRSNGDIAVDEYHRYKEDVEMIKDINMDAYRFSISWSRILPKGKLSGGVNREGIKYYNNLINELLAKGLQPFVTLFHWDLPQTLEDEYNGFLSPNIVNDFRDYAELCFKEFGNRVKNWITLNEPWAFAKHAYVDGSFAPGRCSSWQNLNCTGGDSATEPYIVTHNQILAHASAVNVYKTKYQKFQKGKIGITLVCHWTVPLYDTKLDHHASQRAIDFMFGWYMDPLTSGDYPSSMRSIVGSRLPKFSTYQVKLVKGSFDFIGLNYYTSHYATNAPELSEVIKPSYNTDALVSFTSQRNGIPIGPTAASGWLSIYPKGIHDLLIYTKIKYNNPLIYITENGMDDFNDPTLPLEKALEDTQRIDYYYDHLYYLQTAIKDGVNVKGYFAWSLVDNFEWGLGYTSRFGIYFIDYNNDLKRYPKMSAIWFKNFLQHKIVAYGDSR