Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43019.t1 | XP_024630613.1 | 88.4 | 112 | 12 | 1 | 70 | 180 | 136 | 247 | 6.00E-46 | 194.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43019.t1 | G7IGL8 | 87.1 | 101 | 12 | 1 | 70 | 169 | 356 | 456 | 6.1e-40 | 173.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene43019 | 0.823178 | 1.59E-53 | -1.69E-46 |
| MS.gene049254 | MS.gene43019 | 0.814835 | 1.26E-51 | -1.69E-46 |
| MS.gene049404 | MS.gene43019 | 0.849392 | 3.33E-60 | -1.69E-46 |
| MS.gene049452 | MS.gene43019 | 0.801035 | 1.09E-48 | -1.69E-46 |
| MS.gene049501 | MS.gene43019 | 0.833557 | 4.98E-56 | -1.69E-46 |
| MS.gene049711 | MS.gene43019 | 0.805927 | 1.05E-49 | -1.69E-46 |
| MS.gene049850 | MS.gene43019 | 0.811929 | 5.47E-51 | -1.69E-46 |
| MS.gene050020 | MS.gene43019 | 0.804241 | 2.37E-49 | -1.69E-46 |
| MS.gene050026 | MS.gene43019 | 0.804122 | 2.51E-49 | -1.69E-46 |
| MS.gene050442 | MS.gene43019 | 0.814775 | 1.30E-51 | -1.69E-46 |
| MS.gene050759 | MS.gene43019 | 0.806534 | 7.85E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene43019 | 0.860075 | 2.66E-63 | -1.69E-46 |
| MS.gene051247 | MS.gene43019 | 0.822162 | 2.75E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene43019 | 0.814909 | 1.21E-51 | -1.69E-46 |
| MS.gene051594 | MS.gene43019 | 0.802326 | 5.92E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene43019 | 0.820738 | 5.85E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene43019 | 0.815157 | 1.07E-51 | -1.69E-46 |
| MS.gene051744 | MS.gene43019 | 0.836443 | 9.33E-57 | -1.69E-46 |
| MS.gene051800 | MS.gene43019 | 0.806999 | 6.26E-50 | -1.69E-46 |
| MS.gene052020 | MS.gene43019 | 0.801039 | 1.09E-48 | -1.69E-46 |
| MS.gene052516 | MS.gene43019 | 0.845138 | 4.89E-59 | -1.69E-46 |
| MS.gene052519 | MS.gene43019 | 0.828936 | 6.81E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene43019 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene43019 | 0.816993 | 4.15E-52 | -1.69E-46 |
| MS.gene052611 | MS.gene43019 | 0.826026 | 3.40E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene43019 | 0.827457 | 1.55E-54 | -1.69E-46 |
| MS.gene052867 | MS.gene43019 | 0.825576 | 4.35E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene43019 | 0.801077 | 1.07E-48 | -1.69E-46 |
| MS.gene053079 | MS.gene43019 | 0.800008 | 1.76E-48 | -1.69E-46 |
| MS.gene053166 | MS.gene43019 | 0.81892 | 1.52E-52 | -1.69E-46 |
| MS.gene053226 | MS.gene43019 | 0.838444 | 2.87E-57 | -1.69E-46 |
| MS.gene053296 | MS.gene43019 | 0.82903 | 6.47E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene43019 | 0.827485 | 1.52E-54 | -1.69E-46 |
| MS.gene054236 | MS.gene43019 | 0.818131 | 2.30E-52 | -1.69E-46 |
| MS.gene05423 | MS.gene43019 | 0.805637 | 1.21E-49 | -1.69E-46 |
| MS.gene054467 | MS.gene43019 | 0.80563 | 1.22E-49 | -1.69E-46 |
| MS.gene054559 | MS.gene43019 | 0.808622 | 2.83E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene43019 | 0.861886 | 7.49E-64 | -1.69E-46 |
| MS.gene054775 | MS.gene43019 | 0.841567 | 4.39E-58 | -1.69E-46 |
| MS.gene054801 | MS.gene43019 | 0.803444 | 3.48E-49 | -1.69E-46 |
| MS.gene054991 | MS.gene43019 | 0.80146 | 8.91E-49 | -1.69E-46 |
| MS.gene055227 | MS.gene43019 | 0.801028 | 1.09E-48 | -1.69E-46 |
| MS.gene055228 | MS.gene43019 | 0.813554 | 2.41E-51 | -1.69E-46 |
| MS.gene055357 | MS.gene43019 | 0.8014 | 9.17E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene43019 | 0.8159 | 7.29E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene43019 | 0.83908 | 1.96E-57 | -1.69E-46 |
| MS.gene055468 | MS.gene43019 | 0.807629 | 4.61E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene43019 | 0.816808 | 4.57E-52 | -1.69E-46 |
| MS.gene055818 | MS.gene43019 | 0.83593 | 1.26E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene43019 | 0.803596 | 3.23E-49 | -1.69E-46 |
| MS.gene05604 | MS.gene43019 | 0.814129 | 1.80E-51 | -1.69E-46 |
| MS.gene056050 | MS.gene43019 | 0.815159 | 1.07E-51 | -1.69E-46 |
| MS.gene056162 | MS.gene43019 | 0.813708 | 2.23E-51 | -1.69E-46 |
| MS.gene056173 | MS.gene43019 | 0.813074 | 3.08E-51 | -1.69E-46 |
| MS.gene056174 | MS.gene43019 | 0.817782 | 2.76E-52 | -1.69E-46 |
| MS.gene056252 | MS.gene43019 | 0.807475 | 4.96E-50 | -1.69E-46 |
| MS.gene056366 | MS.gene43019 | 0.834794 | 2.44E-56 | -1.69E-46 |
| MS.gene056595 | MS.gene43019 | 0.829472 | 5.05E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene43019 | 0.800213 | 1.60E-48 | -1.69E-46 |
| MS.gene05690 | MS.gene43019 | 0.803717 | 3.05E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene43019 | 0.837997 | 3.73E-57 | -1.69E-46 |
| MS.gene057869 | MS.gene43019 | 0.804356 | 2.25E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene43019 | 0.813626 | 2.33E-51 | -1.69E-46 |
| MS.gene058009 | MS.gene43019 | 0.807793 | 4.25E-50 | -1.69E-46 |
| MS.gene058010 | MS.gene43019 | 0.843233 | 1.59E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene43019 | 0.833427 | 5.37E-56 | -1.69E-46 |
| MS.gene058636 | MS.gene43019 | 0.80503 | 1.63E-49 | -1.69E-46 |
| MS.gene058783 | MS.gene43019 | 0.806665 | 7.37E-50 | -1.69E-46 |
| MS.gene058979 | MS.gene43019 | 0.837124 | 6.25E-57 | -1.69E-46 |
| MS.gene059272 | MS.gene43019 | 0.813047 | 3.12E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene43019 | 0.822703 | 2.06E-53 | -1.69E-46 |
| MS.gene059842 | MS.gene43019 | 0.806634 | 7.48E-50 | -1.69E-46 |
| MS.gene060011 | MS.gene43019 | 0.81013 | 1.34E-50 | -1.69E-46 |
| MS.gene060137 | MS.gene43019 | -0.823814 | 1.13E-53 | -1.69E-46 |
| MS.gene060312 | MS.gene43019 | 0.800588 | 1.34E-48 | -1.69E-46 |
| MS.gene060322 | MS.gene43019 | 0.815703 | 8.07E-52 | -1.69E-46 |
| MS.gene060521 | MS.gene43019 | 0.811583 | 6.51E-51 | -1.69E-46 |
| MS.gene06052 | MS.gene43019 | 0.803341 | 3.65E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene43019 | 0.825793 | 3.86E-54 | -1.69E-46 |
| MS.gene060604 | MS.gene43019 | 0.805279 | 1.44E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43019.t1 | MTR_2g048920 | 87.129 | 101 | 12 | 1 | 70 | 169 | 356 | 456 | 4.10e-49 | 166 |
| MS.gene43019.t1 | MTR_5g074790 | 66.234 | 77 | 21 | 2 | 65 | 140 | 37 | 109 | 6.22e-25 | 98.2 |
| MS.gene43019.t1 | MTR_7g034450 | 87.234 | 47 | 6 | 0 | 151 | 197 | 200 | 246 | 6.47e-20 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 63 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGAAGCATCATATTTAAT+TGG | 0.234173 | 8.1:+55837098 | None:intergenic |
| CGTTGCCTCATTTGATTTCC+CGG | 0.280615 | 8.1:-55837341 | MS.gene43019:CDS |
| GGCGTGCCTTGTTGTCCTAT+TGG | 0.304190 | 8.1:-55838834 | MS.gene43019:CDS |
| GCGTGCCTTGTTGTCCTATT+GGG | 0.312566 | 8.1:-55838833 | MS.gene43019:CDS |
| TCAAATGAGGCAACGTTTCC+TGG | 0.312844 | 8.1:+55837349 | None:intergenic |
| AGCGCTCCACGGCTAATAAA+AGG | 0.333116 | 8.1:-55838789 | MS.gene43019:CDS |
| GTAATCAATGATCCTTCATT+TGG | 0.334076 | 8.1:-55837390 | MS.gene43019:CDS |
| CTTTCATCCTCCTCAATGTT+GGG | 0.343582 | 8.1:+55837129 | None:intergenic |
| ACAATTGACACAGGAGTTAC+AGG | 0.366220 | 8.1:-55837313 | MS.gene43019:CDS |
| GCTAATGGAGCAAGAGTTGC+GGG | 0.367978 | 8.1:-55837283 | MS.gene43019:CDS |
| GAACTTTGGAGGAAGGTATC+AGG | 0.372868 | 8.1:-55837477 | MS.gene43019:CDS |
| ACCGTTCTTATCGCCCTCAT+TGG | 0.390201 | 8.1:-55838873 | MS.gene43019:CDS |
| GATGTTGATGACACTGTTCC+TGG | 0.390965 | 8.1:-55838147 | MS.gene43019:intron |
| TCTCTCATTTGTAGCCCAAT+AGG | 0.399506 | 8.1:+55838819 | None:intergenic |
| TTCTTATCGCCCTCATTGGA+TGG | 0.406532 | 8.1:-55838869 | MS.gene43019:CDS |
| CCTGTGTCAATTGTTCTATC+CGG | 0.434929 | 8.1:+55837322 | None:intergenic |
| ATTGGATGGGCGAAGAAGAT+TGG | 0.444083 | 8.1:-55838855 | MS.gene43019:CDS |
| AAGCGTTGATCGACGGTTTG+AGG | 0.444795 | 8.1:-55837217 | MS.gene43019:CDS |
| ATGCGATCAAGCTAGAACTT+TGG | 0.448527 | 8.1:-55837491 | MS.gene43019:intron |
| ACTTTCATCCTCCTCAATGT+TGG | 0.469316 | 8.1:+55837128 | None:intergenic |
| ATACCACTTATGCGTTGTCC+CGG | 0.475313 | 8.1:+55837452 | None:intergenic |
| GTTACAGGCTCGTAAGCTAA+TGG | 0.476754 | 8.1:-55837298 | MS.gene43019:CDS |
| ACGCATAAGTGGTATGGTCT+TGG | 0.495995 | 8.1:-55837444 | MS.gene43019:CDS |
| TGGTCAGTACGCTCCCCTCA+TGG | 0.496380 | 8.1:-55837424 | MS.gene43019:CDS |
| TGCAAGCACATCAAGGAGAC+CGG | 0.497288 | 8.1:-55837187 | MS.gene43019:CDS |
| CGATCAAGCTAGAACTTTGG+AGG | 0.515586 | 8.1:-55837488 | MS.gene43019:intron |
| TTCAAGAAAGCGTTGATCGA+CGG | 0.516090 | 8.1:-55837224 | MS.gene43019:CDS |
| GAAGAACCTTCTCCAAATGA+AGG | 0.521903 | 8.1:+55837378 | None:intergenic |
| CTGTGTCAATTGTTCTATCC+GGG | 0.527946 | 8.1:+55837323 | None:intergenic |
| CGAGACGCTGAGCAATATAG+AGG | 0.538239 | 8.1:-55837249 | MS.gene43019:CDS |
| GCAAGAGTTGCGGGACAAGA+TGG | 0.542408 | 8.1:-55837274 | MS.gene43019:CDS |
| GACCCGGGACAACGCATAAG+TGG | 0.542420 | 8.1:-55837455 | MS.gene43019:CDS |
| AATGATCCTTCATTTGGAGA+AGG | 0.543939 | 8.1:-55837384 | MS.gene43019:CDS |
| TACGCTCCCCTCATGGAGCA+TGG | 0.553567 | 8.1:-55837417 | MS.gene43019:CDS |
| TCTTATCGCCCTCATTGGAT+GGG | 0.558653 | 8.1:-55838868 | MS.gene43019:CDS |
| AGAAGGTTCTTCAAGTAACC+AGG | 0.559696 | 8.1:-55837367 | MS.gene43019:CDS |
| AGCTAATGGAGCAAGAGTTG+CGG | 0.562444 | 8.1:-55837284 | MS.gene43019:CDS |
| AGACCGGGTGTTGAAGAAGA+TGG | 0.570375 | 8.1:-55837171 | MS.gene43019:CDS |
| AGACAAGCTCGCCACACACA+AGG | 0.570472 | 8.1:-55838751 | MS.gene43019:CDS |
| TGGAGGAAGGTATCAGGACC+CGG | 0.581600 | 8.1:-55837471 | MS.gene43019:CDS |
| TACCACTTATGCGTTGTCCC+GGG | 0.584129 | 8.1:+55837453 | None:intergenic |
| TACAGATCCATGCTCCATGA+GGG | 0.587046 | 8.1:+55837410 | None:intergenic |
| AGAAGATGGTTCAGATGAGT+CGG | 0.588771 | 8.1:-55837157 | MS.gene43019:CDS |
| GGGACAACGCATAAGTGGTA+TGG | 0.595365 | 8.1:-55837450 | MS.gene43019:CDS |
| AATTCATTGCAAGCACATCA+AGG | 0.597411 | 8.1:-55837194 | MS.gene43019:CDS |
| CAGATATGCTATATGATGAA+CGG | 0.598539 | 8.1:-55838912 | None:intergenic |
| CTTCTTCGCCCATCCAATGA+GGG | 0.599418 | 8.1:+55838860 | None:intergenic |
| CAAGCTAGAACTTTGGAGGA+AGG | 0.599968 | 8.1:-55837484 | MS.gene43019:intron |
| GAACCATCTTCTTCAACACC+CGG | 0.609669 | 8.1:+55837168 | None:intergenic |
| TCTTCTTCGCCCATCCAATG+AGG | 0.611333 | 8.1:+55838859 | None:intergenic |
| TCCAATGAGGGCGATAAGAA+CGG | 0.615172 | 8.1:+55838872 | None:intergenic |
| GCAAGCACATCAAGGAGACC+GGG | 0.625370 | 8.1:-55837186 | MS.gene43019:CDS |
| TCTATCCGGGAAATCAAATG+AGG | 0.626271 | 8.1:+55837336 | None:intergenic |
| GTCGGACAATCCCAACATTG+AGG | 0.630524 | 8.1:-55837139 | MS.gene43019:CDS |
| GAGATATAGAAAGCGCTCCA+CGG | 0.639370 | 8.1:-55838800 | MS.gene43019:CDS |
| GACAAGCTCGCCACACACAA+GGG | 0.647907 | 8.1:-55838750 | MS.gene43019:intron |
| CCGGATAGAACAATTGACAC+AGG | 0.649317 | 8.1:-55837322 | MS.gene43019:CDS |
| ACAGATCCATGCTCCATGAG+GGG | 0.655758 | 8.1:+55837411 | None:intergenic |
| GGAGGAAGGTATCAGGACCC+GGG | 0.660864 | 8.1:-55837470 | MS.gene43019:CDS |
| TTACAGATCCATGCTCCATG+AGG | 0.672267 | 8.1:+55837409 | None:intergenic |
| AAGTAACAGACCCTTGTGTG+TGG | 0.673129 | 8.1:+55838740 | None:intergenic |
| TGTAGCCCAATAGGACAACA+AGG | 0.679336 | 8.1:+55838828 | None:intergenic |
| GGACAATCCCAACATTGAGG+AGG | 0.682139 | 8.1:-55837136 | MS.gene43019:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATATATATTTAATTAGTC+AGG | - | chr8.1:55837356-55837375 | MS.gene43019:CDS | 15.0% |
| !! | CATTTATTATTTATGTATAC+AGG | - | chr8.1:55838427-55838446 | MS.gene43019:intron | 15.0% |
| !! | CTGTATACATAAATAATAAA+TGG | + | chr8.1:55838429-55838448 | None:intergenic | 15.0% |
| !!! | ATGTTATTTTTAACTTGTTT+TGG | - | chr8.1:55837921-55837940 | MS.gene43019:intron | 15.0% |
| !!! | TTAACTTTTTGTGATAAATT+AGG | - | chr8.1:55837391-55837410 | MS.gene43019:CDS | 15.0% |
| !! | TAAAGTTACTAATTCATTTG+AGG | + | chr8.1:55838209-55838228 | None:intergenic | 20.0% |
| !! | TATAAAACCATAGAGAAATA+TGG | - | chr8.1:55838277-55838296 | MS.gene43019:intron | 20.0% |
| ! | AAACCATATTATACATGGTA+CGG | - | chr8.1:55837460-55837479 | MS.gene43019:CDS | 25.0% |
| ! | AATAGTAACATGAATATTCC+TGG | + | chr8.1:55837586-55837605 | None:intergenic | 25.0% |
| ! | ACCAAACAAAAATGAAAGAT+GGG | + | chr8.1:55838088-55838107 | None:intergenic | 25.0% |
| ! | ATAAATTAGGCAAAAGATCT+TGG | - | chr8.1:55837404-55837423 | MS.gene43019:CDS | 25.0% |
| ! | TATATGCACATTTCTTAAAG+AGG | + | chr8.1:55838329-55838348 | None:intergenic | 25.0% |
| !! | TTCACAATGTCATAAGATTT+TGG | + | chr8.1:55838019-55838038 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTTGGAATTGAT+AGG | - | chr8.1:55837931-55837950 | MS.gene43019:intron | 25.0% |
| AAATTAAGGAACCAAAGTCT+TGG | + | chr8.1:55838064-55838083 | None:intergenic | 30.0% | |
| AATGAAAGATGGGCAAATTA+AGG | + | chr8.1:55838078-55838097 | None:intergenic | 30.0% | |
| CAAAATAACCTATTCGTCTT+TGG | + | chr8.1:55837753-55837772 | None:intergenic | 30.0% | |
| CCAGGTTATTATTATGGTTT+CGG | + | chr8.1:55837639-55837658 | None:intergenic | 30.0% | |
| CGAGAAAACCATATTATACA+TGG | - | chr8.1:55837455-55837474 | MS.gene43019:CDS | 30.0% | |
| GAAATTCACCTGTGTATTAT+AGG | + | chr8.1:55837507-55837526 | None:intergenic | 30.0% | |
| GACCAAACAAAAATGAAAGA+TGG | + | chr8.1:55838089-55838108 | None:intergenic | 30.0% | |
| GTAATCAATGATCCTTCATT+TGG | - | chr8.1:55838623-55838642 | MS.gene43019:intron | 30.0% | |
| TAAATTAGCCAAAGACGAAT+AGG | - | chr8.1:55837742-55837761 | MS.gene43019:intron | 30.0% | |
| TTATGACATTGTGAAGTTTG+TGG | - | chr8.1:55838024-55838043 | MS.gene43019:intron | 30.0% | |
| ! | TATGTATACAGGTAGCTTTT+CGG | - | chr8.1:55838438-55838457 | MS.gene43019:intron | 30.0% |
| ! | TTTTACCATATTTATCGCGT+GGG | + | chr8.1:55837305-55837324 | None:intergenic | 30.0% |
| !! | AAGACGAATAGGTTATTTTG+TGG | - | chr8.1:55837753-55837772 | MS.gene43019:intron | 30.0% |
| !! | AGACGAATAGGTTATTTTGT+GGG | - | chr8.1:55837754-55837773 | MS.gene43019:intron | 30.0% |
| !! | TGAGCATTGATAACTGTATA+GGG | - | chr8.1:55837973-55837992 | MS.gene43019:intron | 30.0% |
| !! | TTGAGCATTGATAACTGTAT+AGG | - | chr8.1:55837972-55837991 | MS.gene43019:intron | 30.0% |
| AACTTTCATTACATTCTGCC+AGG | - | chr8.1:55837565-55837584 | MS.gene43019:intron | 35.0% | |
| AATGATCCTTCATTTGGAGA+AGG | - | chr8.1:55838629-55838648 | MS.gene43019:intron | 35.0% | |
| AATTCATTGCAAGCACATCA+AGG | - | chr8.1:55838819-55838838 | MS.gene43019:CDS | 35.0% | |
| CACAAAATGCTGCAAAATGA+AGG | + | chr8.1:55837841-55837860 | None:intergenic | 35.0% | |
| CATCCGTACCATGTATAATA+TGG | + | chr8.1:55837466-55837485 | None:intergenic | 35.0% | |
| CCGAAACCATAATAATAACC+TGG | - | chr8.1:55837636-55837655 | MS.gene43019:intron | 35.0% | |
| GAAATGCCAAAATATCAACC+AGG | + | chr8.1:55837887-55837906 | None:intergenic | 35.0% | |
| TCACTAGCCATATTTCTCTA+TGG | + | chr8.1:55838287-55838306 | None:intergenic | 35.0% | |
| TTCTACTCTGACAGTATGAT+GGG | - | chr8.1:55837524-55837543 | MS.gene43019:intron | 35.0% | |
| TTTCTACTCTGACAGTATGA+TGG | - | chr8.1:55837523-55837542 | MS.gene43019:intron | 35.0% | |
| ! | ATGTATACAGGTAGCTTTTC+GGG | - | chr8.1:55838439-55838458 | MS.gene43019:intron | 35.0% |
| ! | CTTTTACCATATTTATCGCG+TGG | + | chr8.1:55837306-55837325 | None:intergenic | 35.0% |
| ! | GTAATTTGCAACCAAGACTT+TGG | - | chr8.1:55838050-55838069 | MS.gene43019:intron | 35.0% |
| ! | TCTATTCCTTTTATTAGCCG+TGG | + | chr8.1:55837233-55837252 | None:intergenic | 35.0% |
| ! | TGTTATCTTTGCAGAGTGTT+TGG | - | chr8.1:55838237-55838256 | MS.gene43019:intron | 35.0% |
| !! | ACTGTTCCTGGTTGATATTT+TGG | - | chr8.1:55837878-55837897 | MS.gene43019:intron | 35.0% |
| !! | ATAGGTTATTTTGTGGGGAT+AGG | - | chr8.1:55837760-55837779 | MS.gene43019:intron | 35.0% |
| !! | GACGAATAGGTTATTTTGTG+GGG | - | chr8.1:55837755-55837774 | MS.gene43019:intron | 35.0% |
| !! | GCCCATCTTTCATTTTTGTT+TGG | - | chr8.1:55838084-55838103 | MS.gene43019:intron | 35.0% |
| AATCTTGGTTCACCACATTG+TGG | + | chr8.1:55838141-55838160 | None:intergenic | 40.0% | |
| ACAATTGACACAGGAGTTAC+AGG | - | chr8.1:55838700-55838719 | MS.gene43019:intron | 40.0% | |
| ACAGGGCCAGGTTATTATTA+TGG | + | chr8.1:55837645-55837664 | None:intergenic | 40.0% | |
| ACTTTCATCCTCCTCAATGT+TGG | + | chr8.1:55838888-55838907 | None:intergenic | 40.0% | |
| AGAAGATGGTTCAGATGAGT+CGG | - | chr8.1:55838856-55838875 | MS.gene43019:CDS | 40.0% | |
| AGAAGGTTCTTCAAGTAACC+AGG | - | chr8.1:55838646-55838665 | MS.gene43019:intron | 40.0% | |
| ATGCGATCAAGCTAGAACTT+TGG | - | chr8.1:55838522-55838541 | MS.gene43019:intron | 40.0% | |
| CCTGTGTCAATTGTTCTATC+CGG | + | chr8.1:55838694-55838713 | None:intergenic | 40.0% | |
| CGCATCAGGCAATTATTCAT+AGG | + | chr8.1:55838507-55838526 | None:intergenic | 40.0% | |
| CTGTGTCAATTGTTCTATCC+GGG | + | chr8.1:55838693-55838712 | None:intergenic | 40.0% | |
| CTTTCATCCTCCTCAATGTT+GGG | + | chr8.1:55838887-55838906 | None:intergenic | 40.0% | |
| GAAGAACCTTCTCCAAATGA+AGG | + | chr8.1:55838638-55838657 | None:intergenic | 40.0% | |
| GCATATACTGTTGTGTAGTG+TGG | - | chr8.1:55838342-55838361 | MS.gene43019:intron | 40.0% | |
| GTGAACCAAGATTTGAATCC+CGG | - | chr8.1:55838148-55838167 | MS.gene43019:CDS | 40.0% | |
| TCTATCCGGGAAATCAAATG+AGG | + | chr8.1:55838680-55838699 | None:intergenic | 40.0% | |
| TCTCTCATTTGTAGCCCAAT+AGG | + | chr8.1:55837197-55837216 | None:intergenic | 40.0% | |
| TGATCGCTCCTATAATACAC+AGG | - | chr8.1:55837496-55837515 | MS.gene43019:intron | 40.0% | |
| TTGTGGGGATAGGATTATCA+TGG | - | chr8.1:55837770-55837789 | MS.gene43019:intron | 40.0% | |
| ! | CTAATTCATTTGAGGCGTGT+CGG | + | chr8.1:55838201-55838220 | None:intergenic | 40.0% |
| ! | GCATTGATAACTGTATAGGG+TGG | - | chr8.1:55837976-55837995 | MS.gene43019:intron | 40.0% |
| ! | TTTGGACTGTTTGTGCTGTT+TGG | - | chr8.1:55838374-55838393 | MS.gene43019:intron | 40.0% |
| !! | TTCAAGAAAGCGTTGATCGA+CGG | - | chr8.1:55838789-55838808 | MS.gene43019:CDS | 40.0% |
| AAGTAACAGACCCTTGTGTG+TGG | + | chr8.1:55837276-55837295 | None:intergenic | 45.0% | |
| ACCAAGATTTGAATCCCGGT+TGG | - | chr8.1:55838152-55838171 | MS.gene43019:CDS | 45.0% | |
| ACGCATAAGTGGTATGGTCT+TGG | - | chr8.1:55838569-55838588 | MS.gene43019:intron | 45.0% | |
| AGCTAATGGAGCAAGAGTTG+CGG | - | chr8.1:55838729-55838748 | MS.gene43019:intron | 45.0% | |
| ATACCACTTATGCGTTGTCC+CGG | + | chr8.1:55838564-55838583 | None:intergenic | 45.0% | |
| ATTGGATGGGCGAAGAAGAT+TGG | - | chr8.1:55837158-55837177 | MS.gene43019:CDS | 45.0% | |
| CCAAGATTTGAATCCCGGTT+GGG | - | chr8.1:55838153-55838172 | MS.gene43019:CDS | 45.0% | |
| CCGGATAGAACAATTGACAC+AGG | - | chr8.1:55838691-55838710 | MS.gene43019:intron | 45.0% | |
| CGATCAAGCTAGAACTTTGG+AGG | - | chr8.1:55838525-55838544 | MS.gene43019:intron | 45.0% | |
| CGATGAAGCTCGTCTACATA+AGG | + | chr8.1:55837437-55837456 | None:intergenic | 45.0% | |
| GAACCATCTTCTTCAACACC+CGG | + | chr8.1:55838848-55838867 | None:intergenic | 45.0% | |
| GGATGAGGTACGACTATTCT+TGG | - | chr8.1:55838460-55838479 | MS.gene43019:intron | 45.0% | |
| GTTACAGGCTCGTAAGCTAA+TGG | - | chr8.1:55838715-55838734 | MS.gene43019:intron | 45.0% | |
| TAAGCCACCAAGCTTGAACA+GGG | + | chr8.1:55837662-55837681 | None:intergenic | 45.0% | |
| TACAGATCCATGCTCCATGA+GGG | + | chr8.1:55838606-55838625 | None:intergenic | 45.0% | |
| TCAAATGAGGCAACGTTTCC+TGG | + | chr8.1:55838667-55838686 | None:intergenic | 45.0% | |
| TCCAATGAGGGCGATAAGAA+CGG | + | chr8.1:55837144-55837163 | None:intergenic | 45.0% | |
| TCTTATCGCCCTCATTGGAT+GGG | - | chr8.1:55837145-55837164 | MS.gene43019:CDS | 45.0% | |
| TGCAACCCACGCGATAAATA+TGG | - | chr8.1:55837297-55837316 | MS.gene43019:CDS | 45.0% | |
| TGTAGCCCAATAGGACAACA+AGG | + | chr8.1:55837188-55837207 | None:intergenic | 45.0% | |
| TTACAGATCCATGCTCCATG+AGG | + | chr8.1:55838607-55838626 | None:intergenic | 45.0% | |
| TTCTTATCGCCCTCATTGGA+TGG | - | chr8.1:55837144-55837163 | MS.gene43019:CDS | 45.0% | |
| ! | CAAGCTAGAACTTTGGAGGA+AGG | - | chr8.1:55838529-55838548 | MS.gene43019:intron | 45.0% |
| ! | CGTGTCGGCGTAATAAATGT+GGG | + | chr8.1:55838186-55838205 | None:intergenic | 45.0% |
| ! | CGTTGCCTCATTTGATTTCC+CGG | - | chr8.1:55838672-55838691 | MS.gene43019:intron | 45.0% |
| !! | AGTTCTAGCTTGATCGCATC+AGG | + | chr8.1:55838521-55838540 | None:intergenic | 45.0% |
| !! | GAACTTTGGAGGAAGGTATC+AGG | - | chr8.1:55838536-55838555 | MS.gene43019:intron | 45.0% |
| !! | GAGATATAGAAAGCGCTCCA+CGG | - | chr8.1:55837213-55837232 | MS.gene43019:CDS | 45.0% |
| !! | GATGTTGATGACACTGTTCC+TGG | - | chr8.1:55837866-55837885 | MS.gene43019:intron | 45.0% |
| ACAGATCCATGCTCCATGAG+GGG | + | chr8.1:55838605-55838624 | None:intergenic | 50.0% | |
| ACCGTTCTTATCGCCCTCAT+TGG | - | chr8.1:55837140-55837159 | MS.gene43019:CDS | 50.0% | |
| AGCGCTCCACGGCTAATAAA+AGG | - | chr8.1:55837224-55837243 | MS.gene43019:CDS | 50.0% | |
| AGTCTAGCACCTTGCGTTAG+AGG | + | chr8.1:55838117-55838136 | None:intergenic | 50.0% | |
| CCCAACCGGGATTCAAATCT+TGG | + | chr8.1:55838156-55838175 | None:intergenic | 50.0% | |
| CGAGACGCTGAGCAATATAG+AGG | - | chr8.1:55838764-55838783 | MS.gene43019:CDS | 50.0% | |
| CTAAGCCACCAAGCTTGAAC+AGG | + | chr8.1:55837663-55837682 | None:intergenic | 50.0% | |
| CTTCTTCGCCCATCCAATGA+GGG | + | chr8.1:55837156-55837175 | None:intergenic | 50.0% | |
| GCTAATGGAGCAAGAGTTGC+GGG | - | chr8.1:55838730-55838749 | MS.gene43019:intron | 50.0% | |
| GGACAATCCCAACATTGAGG+AGG | - | chr8.1:55838877-55838896 | MS.gene43019:CDS | 50.0% | |
| GGGACAACGCATAAGTGGTA+TGG | - | chr8.1:55838563-55838582 | MS.gene43019:intron | 50.0% | |
| GGTGCTAGACTTCCACAATG+TGG | - | chr8.1:55838126-55838145 | MS.gene43019:intron | 50.0% | |
| GTCGGACAATCCCAACATTG+AGG | - | chr8.1:55838874-55838893 | MS.gene43019:CDS | 50.0% | |
| GTTGTGTAGTGTGGCTGTTC+TGG | - | chr8.1:55838351-55838370 | MS.gene43019:intron | 50.0% | |
| TACCACTTATGCGTTGTCCC+GGG | + | chr8.1:55838563-55838582 | None:intergenic | 50.0% | |
| TCTTCTTCGCCCATCCAATG+AGG | + | chr8.1:55837157-55837176 | None:intergenic | 50.0% | |
| TGCAAGCACATCAAGGAGAC+CGG | - | chr8.1:55838826-55838845 | MS.gene43019:CDS | 50.0% | |
| ! | GCGTGCCTTGTTGTCCTATT+GGG | - | chr8.1:55837180-55837199 | MS.gene43019:CDS | 50.0% |
| ! | GCGTGTCGGCGTAATAAATG+TGG | + | chr8.1:55838187-55838206 | None:intergenic | 50.0% |
| ! | GTAGTGTGGCTGTTCTGGTT+TGG | - | chr8.1:55838356-55838375 | MS.gene43019:intron | 50.0% |
| !! | AAGCGTTGATCGACGGTTTG+AGG | - | chr8.1:55838796-55838815 | MS.gene43019:CDS | 50.0% |
| !! | ACAGGTAGCTTTTCGGGATG+AGG | - | chr8.1:55838445-55838464 | MS.gene43019:intron | 50.0% |
| !! | AGACCGGGTGTTGAAGAAGA+TGG | - | chr8.1:55838842-55838861 | MS.gene43019:CDS | 50.0% |
| AACCTGGCCCTGTTCAAGCT+TGG | - | chr8.1:55837652-55837671 | MS.gene43019:intron | 55.0% | |
| AGACAAGCTCGCCACACACA+AGG | - | chr8.1:55837262-55837281 | MS.gene43019:CDS | 55.0% | |
| ATGTGGGTAGCTCTCCCAAC+CGG | + | chr8.1:55838170-55838189 | None:intergenic | 55.0% | |
| GACAAGCTCGCCACACACAA+GGG | - | chr8.1:55837263-55837282 | MS.gene43019:CDS | 55.0% | |
| GCAAGAGTTGCGGGACAAGA+TGG | - | chr8.1:55838739-55838758 | MS.gene43019:intron | 55.0% | |
| GCAAGCACATCAAGGAGACC+GGG | - | chr8.1:55838827-55838846 | MS.gene43019:CDS | 55.0% | |
| GCACCTTGCGTTAGAGGAGT+CGG | + | chr8.1:55838111-55838130 | None:intergenic | 55.0% | |
| ! | GGCGTGCCTTGTTGTCCTAT+TGG | - | chr8.1:55837179-55837198 | MS.gene43019:CDS | 55.0% |
| !! | TGGAGGAAGGTATCAGGACC+CGG | - | chr8.1:55838542-55838561 | MS.gene43019:intron | 55.0% |
| CACCAAGCTTGAACAGGGCC+AGG | + | chr8.1:55837657-55837676 | None:intergenic | 60.0% | |
| CTGGCCCTGTTCAAGCTTGG+TGG | - | chr8.1:55837655-55837674 | MS.gene43019:intron | 60.0% | |
| GACCCGGGACAACGCATAAG+TGG | - | chr8.1:55838558-55838577 | MS.gene43019:intron | 60.0% | |
| GGTCCGACTCCTCTAACGCA+AGG | - | chr8.1:55838105-55838124 | MS.gene43019:intron | 60.0% | |
| TACGCTCCCCTCATGGAGCA+TGG | - | chr8.1:55838596-55838615 | MS.gene43019:intron | 60.0% | |
| TGGTCAGTACGCTCCCCTCA+TGG | - | chr8.1:55838589-55838608 | MS.gene43019:intron | 60.0% | |
| TGTGGGTAGCTCTCCCAACC+GGG | + | chr8.1:55838169-55838188 | None:intergenic | 60.0% | |
| !! | GGAGGAAGGTATCAGGACCC+GGG | - | chr8.1:55838543-55838562 | MS.gene43019:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 55837113 | 55838922 | 55837113 | ID=MS.gene43019 |
| chr8.1 | mRNA | 55837113 | 55838922 | 55837113 | ID=MS.gene43019.t1;Parent=MS.gene43019 |
| chr8.1 | exon | 55838751 | 55838922 | 55838751 | ID=MS.gene43019.t1.exon1;Parent=MS.gene43019.t1 |
| chr8.1 | CDS | 55838751 | 55838922 | 55838751 | ID=cds.MS.gene43019.t1;Parent=MS.gene43019.t1 |
| chr8.1 | exon | 55838148 | 55838183 | 55838148 | ID=MS.gene43019.t1.exon2;Parent=MS.gene43019.t1 |
| chr8.1 | CDS | 55838148 | 55838183 | 55838148 | ID=cds.MS.gene43019.t1;Parent=MS.gene43019.t1 |
| chr8.1 | exon | 55837113 | 55837498 | 55837113 | ID=MS.gene43019.t1.exon3;Parent=MS.gene43019.t1 |
| chr8.1 | CDS | 55837113 | 55837498 | 55837113 | ID=cds.MS.gene43019.t1;Parent=MS.gene43019.t1 |
| Gene Sequence |
| Protein sequence |
