AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene54538


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 109 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACGACTTCTTGAATAAA+TGG 0.143416 6.1:-61701360 MS.gene54538:CDS
CTAGCACTGTTGAGAATTTC+TGG 0.157165 6.1:+61702463 None:intergenic
AACAACTCCTTTGCATTTCT+TGG 0.218146 6.1:+61701691 None:intergenic
CTTCTGTATTTAAGTATTCT+TGG 0.218368 6.1:+61701779 None:intergenic
ACCCAGGAGATGTGGATTTA+TGG 0.249166 6.1:-61702788 MS.gene54538:CDS
GACTGGTTATTCAGTAGTTT+AGG 0.261552 6.1:-61701499 MS.gene54538:CDS
CACCGACTCACGGGTGTTAA+AGG 0.267503 6.1:-61702141 MS.gene54538:CDS
ATGAAAACCTCCCGGGCATT+AGG 0.298800 6.1:+61703263 None:intergenic
ATCATTCAGACCTTGAAATA+TGG 0.304552 6.1:+61702433 None:intergenic
AATGAGAATGCAACCTGTTC+TGG 0.328101 6.1:+61701409 None:intergenic
TGAACGTAATAGAGTGATTC+AGG 0.333897 6.1:-61702596 MS.gene54538:CDS
GATGATGAGGATGGTTCTTC+AGG 0.349700 6.1:-61703554 MS.gene54538:CDS
CTATTATTTCAGGATTGTAT+AGG 0.362544 6.1:-61702317 MS.gene54538:intron
ACTGGTTATTCAGTAGTTTA+GGG 0.364419 6.1:-61701498 MS.gene54538:CDS
GCAAATTCCTGCACATGTTC+CGG 0.367277 6.1:-61702279 MS.gene54538:CDS
AAGAGGGGCCGAAAAGCTTC+TGG 0.377408 6.1:-61703461 MS.gene54538:CDS
CAAAGGAGTTGTTCAATCAT+AGG 0.383328 6.1:-61701681 MS.gene54538:CDS
GAACTCGTTGCGGCTGCTGC+TGG 0.386586 6.1:-61702859 MS.gene54538:CDS
TGCCATAAATCCACATCTCC+TGG 0.393862 6.1:+61702786 None:intergenic
CAGCTAGTGGTGGTCGGAAG+AGG 0.397609 6.1:-61703478 MS.gene54538:CDS
GCGAAATCGAGATTGATCTT+TGG 0.398795 6.1:+61702256 None:intergenic
ACCAGTCATTTCTTTCTTCA+CGG 0.401217 6.1:+61701515 None:intergenic
ATTTGTGGGAAATTCTGATC+TGG 0.404418 6.1:+61702104 None:intergenic
CTGCATCATGGCATCCACTA+TGG 0.407457 6.1:+61703433 None:intergenic
TGAAAACCTCCCGGGCATTA+GGG 0.410829 6.1:+61703264 None:intergenic
TATTTCTTCAATACCAGAAC+AGG 0.414037 6.1:-61701422 MS.gene54538:CDS
TATCACGTAACATGGCTCTT+TGG 0.418711 6.1:+61702677 None:intergenic
TACCAACCTTATGAGTTTAG+AGG 0.421610 6.1:-61701727 MS.gene54538:CDS
TGACGACTTCTTGAATAAAT+GGG 0.432370 6.1:-61701359 MS.gene54538:CDS
TGAGGAGCAAGTTTCATGAT+TGG 0.432849 6.1:+61701601 None:intergenic
AACGAACCTTGAGGAATTTG+TGG 0.440004 6.1:+61702089 None:intergenic
TCAATACATTATTAAAATGT+CGG 0.443527 6.1:+61702542 None:intergenic
GAAGAAATAAATTGAACATC+GGG 0.447295 6.1:+61701436 None:intergenic
AGCTAGTGGTGGTCGGAAGA+GGG 0.455554 6.1:-61703477 MS.gene54538:CDS
GCCATGTTACGTGATACTTC+TGG 0.460394 6.1:-61702670 MS.gene54538:CDS
TCACTCTATTACGTTCACTA+TGG 0.463287 6.1:+61702602 None:intergenic
GGGTGATATTGACATGGAAT+TGG 0.463892 6.1:-61702890 MS.gene54538:CDS
TCTGGTGATGTTGTATCCTC+AGG 0.466979 6.1:+61702481 None:intergenic
GAGGAGCAAGTTTCATGATT+GGG 0.469428 6.1:+61701602 None:intergenic
TGAACATCGGGAAGTTCGTC+AGG 0.474711 6.1:+61701448 None:intergenic
CTCTTCCGACCACCACTAGC+TGG 0.483214 6.1:+61703479 None:intergenic
TCTTTGGCCGGAACATGTGC+AGG 0.489674 6.1:+61702272 None:intergenic
ATCTGAGAAATACTATCTTA+AGG 0.491213 6.1:-61701651 MS.gene54538:CDS
GAGGATGGTTCTTCAGGCTC+AGG 0.500473 6.1:-61703548 MS.gene54538:CDS
ACGAACCTTGAGGAATTTGT+GGG 0.504423 6.1:+61702090 None:intergenic
TTGAGAATCACCCTAATGCC+CGG 0.506051 6.1:-61703274 MS.gene54538:CDS
TGACATGGAATTGGATGAGA+TGG 0.507251 6.1:-61702881 MS.gene54538:CDS
GATGCAAGGTCTTGATGAAA+GGG 0.513593 6.1:-61703321 MS.gene54538:CDS
TTTGTGGGAAATTCTGATCT+GGG 0.513968 6.1:+61702105 None:intergenic
TTAGCACCTCTAAACTCATA+AGG 0.519230 6.1:+61701721 None:intergenic
TGGTACCGAACCCCTTGAAA+AGG 0.519547 6.1:+61701745 None:intergenic
TCTCGATTTCGCAATAAGAA+AGG 0.526197 6.1:-61702245 MS.gene54538:CDS
CACGTAACATGGCTCTTTGG+CGG 0.527673 6.1:+61702680 None:intergenic
ACTCCTTTGCATTTCTTGGT+AGG 0.527692 6.1:+61701695 None:intergenic
TACAGATACACCAATCAGCA+TGG 0.529586 6.1:-61702911 MS.gene54538:CDS
AGATGCAAGGTCTTGATGAA+AGG 0.540422 6.1:-61703322 MS.gene54538:CDS
AATTCTGATCTGGGTCATCA+AGG 0.542424 6.1:+61702114 None:intergenic
AAGGTTCTGTCACCGACTCA+CGG 0.543196 6.1:-61702151 MS.gene54538:CDS
AATCGAGATTGATCTTTGGC+CGG 0.545496 6.1:+61702260 None:intergenic
GATTGTATAGGAGTAATTGA+TGG 0.547687 6.1:-61702305 MS.gene54538:CDS
TCAATATCACCCATGCTGAT+TGG 0.548167 6.1:+61702901 None:intergenic
AGGTTCTGTCACCGACTCAC+GGG 0.562802 6.1:-61702150 MS.gene54538:CDS
CAAGCTAGTGTTCCAGCTAG+TGG 0.563625 6.1:-61703491 MS.gene54538:CDS
GGTTTATCACCCAGGAGATG+TGG 0.563874 6.1:-61702796 MS.gene54538:CDS
CAGGAGCGGTTTCAGCACTC+AGG 0.566031 6.1:-61702577 MS.gene54538:CDS
GCCATAAATCCACATCTCCT+GGG 0.566505 6.1:+61702787 None:intergenic
AGCAGCTGCTATCTGCATCA+TGG 0.570810 6.1:+61703421 None:intergenic
AGCTTCTGGTGATGCCATAG+TGG 0.573165 6.1:-61703447 MS.gene54538:CDS
CAAGAATACTTAAATACAGA+AGG 0.573953 6.1:-61701778 MS.gene54538:CDS
AATAGAGATGAAAACCTCCC+GGG 0.577351 6.1:+61703256 None:intergenic
TGAAGAAATAAATTGAACAT+CGG 0.577543 6.1:+61701435 None:intergenic
GTGACAGAACCTTCCCAACC+AGG 0.582402 6.1:+61702161 None:intergenic
AAATGCAATTATGAAGAATG+AGG 0.583203 6.1:-61703384 MS.gene54538:CDS
CTTCCCGTGGTTTATCACCC+AGG 0.584887 6.1:-61702804 MS.gene54538:CDS
GCTAGTGGTGGTCGGAAGAG+GGG 0.585645 6.1:-61703476 MS.gene54538:CDS
ATGGCTTTCGATGATGAGGA+TGG 0.589950 6.1:-61703563 MS.gene54538:CDS
CAGCATGGGTGATATTGACA+TGG 0.591176 6.1:-61702896 MS.gene54538:CDS
TGAGAATCACCCTAATGCCC+GGG 0.591855 6.1:-61703273 MS.gene54538:CDS
CTGGTTATTCAGTAGTTTAG+GGG 0.592004 6.1:-61701497 MS.gene54538:CDS
CACCTCTAAACTCATAAGGT+TGG 0.594202 6.1:+61701725 None:intergenic
TTTATGGCAGAAGTGCTGAA+TGG 0.597101 6.1:-61702772 MS.gene54538:CDS
AAGCAAGTGCATCAGTGTGT+TGG 0.597279 6.1:-61703348 MS.gene54538:CDS
TGGTTATTCAGTAGTTTAGG+GGG 0.599818 6.1:-61701496 MS.gene54538:CDS
AATTTCCCACAAATTCCTCA+AGG 0.601774 6.1:-61702095 MS.gene54538:intron
ACAGATACACCAATCAGCAT+GGG 0.605365 6.1:-61702910 MS.gene54538:CDS
TGCCTTTAACACCCGTGAGT+CGG 0.605648 6.1:+61702139 None:intergenic
TTAAGTATTCTTGGTCAACA+AGG 0.607070 6.1:+61701788 None:intergenic
TTGTCGTGAAATGTTGCGGA+TGG 0.607611 6.1:-61702737 MS.gene54538:CDS
TCACCTACCAAGAAATGCAA+AGG 0.607831 6.1:-61701698 MS.gene54538:CDS
GTGTTCCAGCTAGTGGTGGT+CGG 0.615184 6.1:-61703484 MS.gene54538:CDS
ATCTCCTGGGTGATAAACCA+CGG 0.624115 6.1:+61702800 None:intergenic
ACCAGAAGTATCACGTAACA+TGG 0.625814 6.1:+61702669 None:intergenic
GATGATGCGAACATGTTAGA+CGG 0.630185 6.1:-61703524 MS.gene54538:CDS
GGTGATGTTGTATCCTCAGG+AGG 0.631551 6.1:+61702484 None:intergenic
CTAACAAAACAGCCTTCCCG+TGG 0.634429 6.1:-61702817 MS.gene54538:CDS
GTTAATGGCTTTCGATGATG+AGG 0.645112 6.1:-61703567 MS.gene54538:CDS
TCTCCTGGGTGATAAACCAC+GGG 0.646361 6.1:+61702801 None:intergenic
GCTAGTGTTCCAGCTAGTGG+TGG 0.652322 6.1:-61703488 MS.gene54538:CDS
CTGGGTGATAAACCACGGGA+AGG 0.661556 6.1:+61702805 None:intergenic
GGTTATTCAGTAGTTTAGGG+GGG 0.667813 6.1:-61701495 MS.gene54538:CDS
GGATGAGATGGAACTCGTTG+CGG 0.671380 6.1:-61702869 MS.gene54538:CDS
GTAATAGAGTGATTCAGGAG+CGG 0.681046 6.1:-61702591 MS.gene54538:CDS
TCTTGAATAAATGGGACGAG+TGG 0.681165 6.1:-61701351 MS.gene54538:CDS
CATGTATTTCAGAAGCTGTG+TGG 0.686088 6.1:-61702709 MS.gene54538:CDS
GCCGTGAAGAAAGAAATGAC+TGG 0.693527 6.1:-61701516 MS.gene54538:CDS
TGAGTCTGAAAAGAATACTG+AGG 0.711551 6.1:+61701583 None:intergenic
GAATCACCCTAATGCCCGGG+AGG 0.714237 6.1:-61703270 MS.gene54538:intron
AGTCATTTCTTTCTTCACGG+CGG 0.739854 6.1:+61701518 None:intergenic
AGTGTGTTGGATGAGATGCA+AGG 0.751749 6.1:-61703335 MS.gene54538:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAAATTGATTAACA+TGG + chr6.1:61701869-61701888 None:intergenic 10.0%
!! AAATATAAATTGATTAACAT+GGG + chr6.1:61701868-61701887 None:intergenic 10.0%
!! AACTATTAATTTATTTCCTT+TGG - chr6.1:61703082-61703101 MS.gene54538:intron 15.0%
!! TCAATACATTATTAAAATGT+CGG + chr6.1:61702377-61702396 None:intergenic 15.0%
!! CTTAAAAGATCATACTAATA+TGG + chr6.1:61702525-61702544 None:intergenic 20.0%
!! GAAAAATGAATATAAACTGA+AGG + chr6.1:61702736-61702755 None:intergenic 20.0%
!! TGAAGAAATAAATTGAACAT+CGG + chr6.1:61703484-61703503 None:intergenic 20.0%
!!! TAGATTTTATCCATATTTCA+AGG - chr6.1:61702473-61702492 MS.gene54538:CDS 20.0%
! AAATGCAATTATGAAGAATG+AGG - chr6.1:61701532-61701551 MS.gene54538:CDS 25.0%
! ACAATCCTGAAATAATAGTA+GGG + chr6.1:61702597-61702616 None:intergenic 25.0%
! ATCTGAGAAATACTATCTTA+AGG - chr6.1:61703265-61703284 MS.gene54538:intron 25.0%
! CAAGAATACTTAAATACAGA+AGG - chr6.1:61703138-61703157 MS.gene54538:intron 25.0%
! CTATTATTTCAGGATTGTAT+AGG - chr6.1:61702599-61702618 MS.gene54538:CDS 25.0%
! CTTCTGTATTTAAGTATTCT+TGG + chr6.1:61703140-61703159 None:intergenic 25.0%
! GAAGAAATAAATTGAACATC+GGG + chr6.1:61703483-61703502 None:intergenic 25.0%
! TACAATCCTGAAATAATAGT+AGG + chr6.1:61702598-61702617 None:intergenic 25.0%
! TTCGTAACCAAAAACAAAAA+AGG + chr6.1:61701761-61701780 None:intergenic 25.0%
!! ATTTTCTCAAACGATTCAAA+TGG + chr6.1:61701735-61701754 None:intergenic 25.0%
!!! AAATCGTCCTTTTTTGTTTT+TGG - chr6.1:61701751-61701770 MS.gene54538:CDS 25.0%
!!! AGATTTGTTTTATGCATGAT+TGG - chr6.1:61701925-61701944 MS.gene54538:intron 25.0%
!!! CAGTTTATATTCATTTTTCC+TGG - chr6.1:61702737-61702756 MS.gene54538:CDS 25.0%
!!! TATATTCATTTTTCCTGGTT+GGG - chr6.1:61702742-61702761 MS.gene54538:CDS 25.0%
!!! TTATATTCATTTTTCCTGGT+TGG - chr6.1:61702741-61702760 MS.gene54538:CDS 25.0%
!!! TTTTTGTTTTTGGTTACGAA+TGG - chr6.1:61701761-61701780 MS.gene54538:CDS 25.0%
ACTGGTTATTCAGTAGTTTA+GGG - chr6.1:61703418-61703437 MS.gene54538:CDS 30.0%
ATCATTCAGACCTTGAAATA+TGG + chr6.1:61702486-61702505 None:intergenic 30.0%
CAGTCTAGTTAACTATACAA+AGG + chr6.1:61701794-61701813 None:intergenic 30.0%
GATTGTATAGGAGTAATTGA+TGG - chr6.1:61702611-61702630 MS.gene54538:CDS 30.0%
TATAGTTAACTAGACTGCAA+AGG - chr6.1:61701797-61701816 MS.gene54538:CDS 30.0%
TATTTCTTCAATACCAGAAC+AGG - chr6.1:61703494-61703513 MS.gene54538:CDS 30.0%
TGAAATAATAGTAGGGAGAT+GGG + chr6.1:61702590-61702609 None:intergenic 30.0%
TGACGACTTCTTGAATAAAT+GGG - chr6.1:61703557-61703576 MS.gene54538:CDS 30.0%
TTAAGTATTCTTGGTCAACA+AGG + chr6.1:61703131-61703150 None:intergenic 30.0%
TTCCTATGAAACAAATCCAA+AGG + chr6.1:61703101-61703120 None:intergenic 30.0%
TTGACGACTTCTTGAATAAA+TGG - chr6.1:61703556-61703575 MS.gene54538:CDS 30.0%
! CAAATCTAGTTTGAAAACAG+AGG + chr6.1:61701912-61701931 None:intergenic 30.0%
! GTTTTATGCATGATTGGAAT+TGG - chr6.1:61701931-61701950 MS.gene54538:intron 30.0%
! TTCCTTTGGATTTGTTTCAT+AGG - chr6.1:61703096-61703115 MS.gene54538:intron 30.0%
!! GCGATATTTTTAAACGTCAT+TGG - chr6.1:61702291-61702310 MS.gene54538:CDS 30.0%
!!! AAGGGTTTACTTTTTTGCTT+TGG - chr6.1:61701613-61701632 MS.gene54538:CDS 30.0%
AACAACTCCTTTGCATTTCT+TGG + chr6.1:61703228-61703247 None:intergenic 35.0%
AATTTCCCACAAATTCCTCA+AGG - chr6.1:61702821-61702840 MS.gene54538:CDS 35.0%
ACCAGTCATTTCTTTCTTCA+CGG + chr6.1:61703404-61703423 None:intergenic 35.0%
AGAGTGAAAAAAGAATGCCA+TGG - chr6.1:61701684-61701703 MS.gene54538:CDS 35.0%
AGCACATAGAGTGATAAACA+GGG + chr6.1:61702552-61702571 None:intergenic 35.0%
ATAAATGCTAACGAACCTTG+AGG + chr6.1:61702839-61702858 None:intergenic 35.0%
ATTTGTGGGAAATTCTGATC+TGG + chr6.1:61702815-61702834 None:intergenic 35.0%
CAAAGGAGTTGTTCAATCAT+AGG - chr6.1:61703235-61703254 MS.gene54538:intron 35.0%
CATCTCCCTACTATTATTTC+AGG - chr6.1:61702589-61702608 MS.gene54538:CDS 35.0%
CATGTGAGTTTGTGTTTCAT+AGG - chr6.1:61703036-61703055 MS.gene54538:intron 35.0%
CTATGAAACACAAACTCACA+TGG + chr6.1:61703038-61703057 None:intergenic 35.0%
CTGAAATAATAGTAGGGAGA+TGG + chr6.1:61702591-61702610 None:intergenic 35.0%
CTGGTTATTCAGTAGTTTAG+GGG - chr6.1:61703419-61703438 MS.gene54538:CDS 35.0%
TAATAGAGATGAAAACCTCC+CGG + chr6.1:61701664-61701683 None:intergenic 35.0%
TACCAACCTTATGAGTTTAG+AGG - chr6.1:61703189-61703208 MS.gene54538:intron 35.0%
TACTACACAGATAACTGACA+AGG + chr6.1:61702889-61702908 None:intergenic 35.0%
TAGCACATAGAGTGATAAAC+AGG + chr6.1:61702553-61702572 None:intergenic 35.0%
TCACTCTATTACGTTCACTA+TGG + chr6.1:61702317-61702336 None:intergenic 35.0%
TCTCGATTTCGCAATAAGAA+AGG - chr6.1:61702671-61702690 MS.gene54538:CDS 35.0%
TGAACGTAATAGAGTGATTC+AGG - chr6.1:61702320-61702339 MS.gene54538:intron 35.0%
TGAGTCTGAAAAGAATACTG+AGG + chr6.1:61703336-61703355 None:intergenic 35.0%
TGGTTATTCAGTAGTTTAGG+GGG - chr6.1:61703420-61703439 MS.gene54538:CDS 35.0%
TTAGCACCTCTAAACTCATA+AGG + chr6.1:61703198-61703217 None:intergenic 35.0%
TTCTCAAACGATTCAAATGG+AGG + chr6.1:61701732-61701751 None:intergenic 35.0%
TTTGTGGGAAATTCTGATCT+GGG + chr6.1:61702814-61702833 None:intergenic 35.0%
! ACTTTTGTCGTGAAATGTTG+CGG - chr6.1:61702175-61702194 MS.gene54538:CDS 35.0%
! AGTATTCTTTTCAGACTCAG+CGG - chr6.1:61703337-61703356 MS.gene54538:CDS 35.0%
! GACTGGTTATTCAGTAGTTT+AGG - chr6.1:61703417-61703436 MS.gene54538:CDS 35.0%
! GATTTCTTGCTCCTTTTCAA+GGG - chr6.1:61703160-61703179 MS.gene54538:intron 35.0%
! GTTTGAAAACAGAGGTATGT+TGG + chr6.1:61701904-61701923 None:intergenic 35.0%
!! ATTTCTTGCTCCTTTTCAAG+GGG - chr6.1:61703161-61703180 MS.gene54538:intron 35.0%
AAAAAGAATGCCATGGTTGC+AGG - chr6.1:61701691-61701710 MS.gene54538:CDS 40.0%
AAAAGAATGCCATGGTTGCA+GGG - chr6.1:61701692-61701711 MS.gene54538:CDS 40.0%
AACGAACCTTGAGGAATTTG+TGG + chr6.1:61702830-61702849 None:intergenic 40.0%
AATAGAGATGAAAACCTCCC+GGG + chr6.1:61701663-61701682 None:intergenic 40.0%
AATCGAGATTGATCTTTGGC+CGG + chr6.1:61702659-61702678 None:intergenic 40.0%
AATGAGAATGCAACCTGTTC+TGG + chr6.1:61703510-61703529 None:intergenic 40.0%
AATTCTGATCTGGGTCATCA+AGG + chr6.1:61702805-61702824 None:intergenic 40.0%
ACAGATACACCAATCAGCAT+GGG - chr6.1:61702006-61702025 MS.gene54538:intron 40.0%
ACGAACCTTGAGGAATTTGT+GGG + chr6.1:61702829-61702848 None:intergenic 40.0%
ACTCCTTTGCATTTCTTGGT+AGG + chr6.1:61703224-61703243 None:intergenic 40.0%
AGATGCAAGGTCTTGATGAA+AGG - chr6.1:61701594-61701613 MS.gene54538:CDS 40.0%
AGCAGCTGCTTCAAAAATGA+GGG - chr6.1:61701508-61701527 MS.gene54538:CDS 40.0%
AGTCATTTCTTTCTTCACGG+CGG + chr6.1:61703401-61703420 None:intergenic 40.0%
CACCTCTAAACTCATAAGGT+TGG + chr6.1:61703194-61703213 None:intergenic 40.0%
CATGTATTTCAGAAGCTGTG+TGG - chr6.1:61702207-61702226 MS.gene54538:CDS 40.0%
CTAGCACTGTTGAGAATTTC+TGG + chr6.1:61702456-61702475 None:intergenic 40.0%
GAGGAGCAAGTTTCATGATT+GGG + chr6.1:61703317-61703336 None:intergenic 40.0%
GATGATGCGAACATGTTAGA+CGG - chr6.1:61701392-61701411 MS.gene54538:CDS 40.0%
GATGCAAGGTCTTGATGAAA+GGG - chr6.1:61701595-61701614 MS.gene54538:CDS 40.0%
GCGAAATCGAGATTGATCTT+TGG + chr6.1:61702663-61702682 None:intergenic 40.0%
GGGTGATATTGACATGGAAT+TGG - chr6.1:61702026-61702045 MS.gene54538:intron 40.0%
GGTTATTCAGTAGTTTAGGG+GGG - chr6.1:61703421-61703440 MS.gene54538:CDS 40.0%
GTAATAGAGTGATTCAGGAG+CGG - chr6.1:61702325-61702344 MS.gene54538:intron 40.0%
GTACAAACACGTTGGATCAA+AGG - chr6.1:61702906-61702925 MS.gene54538:CDS 40.0%
GTTAATGGCTTTCGATGATG+AGG - chr6.1:61701349-61701368 MS.gene54538:CDS 40.0%
TACAGATACACCAATCAGCA+TGG - chr6.1:61702005-61702024 MS.gene54538:intron 40.0%
TAGCAGCTGCTTCAAAAATG+AGG - chr6.1:61701507-61701526 MS.gene54538:CDS 40.0%
TATCACGTAACATGGCTCTT+TGG + chr6.1:61702242-61702261 None:intergenic 40.0%
TCAATATCACCCATGCTGAT+TGG + chr6.1:61702018-61702037 None:intergenic 40.0%
TCACCTACCAAGAAATGCAA+AGG - chr6.1:61703218-61703237 MS.gene54538:intron 40.0%
TCTGTGTAGTACAAACACGT+TGG - chr6.1:61702898-61702917 MS.gene54538:CDS 40.0%
TCTTGAATAAATGGGACGAG+TGG - chr6.1:61703565-61703584 MS.gene54538:CDS 40.0%
TGACATGGAATTGGATGAGA+TGG - chr6.1:61702035-61702054 MS.gene54538:intron 40.0%
TGAGGAGCAAGTTTCATGAT+TGG + chr6.1:61703318-61703337 None:intergenic 40.0%
! CAAAATTTTCCCTGCAACCA+TGG + chr6.1:61701704-61701723 None:intergenic 40.0%
! GGATTTCTTGCTCCTTTTCA+AGG - chr6.1:61703159-61703178 MS.gene54538:intron 40.0%
! GTATTCTTTTCAGACTCAGC+GGG - chr6.1:61703338-61703357 MS.gene54538:CDS 40.0%
! TGAATTTTTGCAACCTCCTG+AGG - chr6.1:61702419-61702438 MS.gene54538:intron 40.0%
!! ACCAGAAGTATCACGTAACA+TGG + chr6.1:61702250-61702269 None:intergenic 40.0%
!! TTCATTTTTCCTGGTTGGGA+AGG - chr6.1:61702746-61702765 MS.gene54538:CDS 40.0%
!! TTTATGGCAGAAGTGCTGAA+TGG - chr6.1:61702144-61702163 MS.gene54538:CDS 40.0%
!!! CTGCAAGCACATTTTGAGAT+AGG + chr6.1:61702700-61702719 None:intergenic 40.0%
AAGCAAGTGCATCAGTGTGT+TGG - chr6.1:61701568-61701587 MS.gene54538:CDS 45.0%
ACCCAGGAGATGTGGATTTA+TGG - chr6.1:61702128-61702147 MS.gene54538:CDS 45.0%
AGTGTGTTGGATGAGATGCA+AGG - chr6.1:61701581-61701600 MS.gene54538:CDS 45.0%
ATCTCCTGGGTGATAAACCA+CGG + chr6.1:61702119-61702138 None:intergenic 45.0%
ATGGCTTTCGATGATGAGGA+TGG - chr6.1:61701353-61701372 MS.gene54538:CDS 45.0%
CAGCATGGGTGATATTGACA+TGG - chr6.1:61702020-61702039 MS.gene54538:intron 45.0%
GATGATGAGGATGGTTCTTC+AGG - chr6.1:61701362-61701381 MS.gene54538:CDS 45.0%
GCAAATTCCTGCACATGTTC+CGG - chr6.1:61702637-61702656 MS.gene54538:CDS 45.0%
GCCATAAATCCACATCTCCT+GGG + chr6.1:61702132-61702151 None:intergenic 45.0%
GCCATGTTACGTGATACTTC+TGG - chr6.1:61702246-61702265 MS.gene54538:CDS 45.0%
GCCGTGAAGAAAGAAATGAC+TGG - chr6.1:61703400-61703419 MS.gene54538:CDS 45.0%
TGCCATAAATCCACATCTCC+TGG + chr6.1:61702133-61702152 None:intergenic 45.0%
TTGAGAATCACCCTAATGCC+CGG - chr6.1:61701642-61701661 MS.gene54538:CDS 45.0%
TTGTCGTGAAATGTTGCGGA+TGG - chr6.1:61702179-61702198 MS.gene54538:CDS 45.0%
! TCTGGTGATGTTGTATCCTC+AGG + chr6.1:61702438-61702457 None:intergenic 45.0%
! TGGCATCACCAGAAGCTTTT+CGG + chr6.1:61701466-61701485 None:intergenic 45.0%
!! TTGCTCCTTTTCAAGGGGTT+CGG - chr6.1:61703166-61703185 MS.gene54538:intron 45.0%
AGCAGCTGCTATCTGCATCA+TGG + chr6.1:61701498-61701517 None:intergenic 50.0%
ATGAAAACCTCCCGGGCATT+AGG + chr6.1:61701656-61701675 None:intergenic 50.0%
CAAGCTAGTGTTCCAGCTAG+TGG - chr6.1:61701425-61701444 MS.gene54538:CDS 50.0%
CACGTAACATGGCTCTTTGG+CGG + chr6.1:61702239-61702258 None:intergenic 50.0%
CTAACAAAACAGCCTTCCCG+TGG - chr6.1:61702099-61702118 MS.gene54538:CDS 50.0%
CTGCATCATGGCATCCACTA+TGG + chr6.1:61701486-61701505 None:intergenic 50.0%
GGATGAGATGGAACTCGTTG+CGG - chr6.1:61702047-61702066 MS.gene54538:intron 50.0%
GGTGATGTTGTATCCTCAGG+AGG + chr6.1:61702435-61702454 None:intergenic 50.0%
GGTTTATCACCCAGGAGATG+TGG - chr6.1:61702120-61702139 MS.gene54538:CDS 50.0%
TAGTTTAGGGGGGACATTCG+TGG - chr6.1:61703431-61703450 MS.gene54538:CDS 50.0%
TCTCCTGGGTGATAAACCAC+GGG + chr6.1:61702118-61702137 None:intergenic 50.0%
TGAAAACCTCCCGGGCATTA+GGG + chr6.1:61701655-61701674 None:intergenic 50.0%
TGAACATCGGGAAGTTCGTC+AGG + chr6.1:61703471-61703490 None:intergenic 50.0%
TGAGAATCACCCTAATGCCC+GGG - chr6.1:61701643-61701662 MS.gene54538:CDS 50.0%
TGCCTTTAACACCCGTGAGT+CGG + chr6.1:61702780-61702799 None:intergenic 50.0%
! AGCTTCTGGTGATGCCATAG+TGG - chr6.1:61701469-61701488 MS.gene54538:CDS 50.0%
! TGGTACCGAACCCCTTGAAA+AGG + chr6.1:61703174-61703193 None:intergenic 50.0%
!! AAGGTTCTGTCACCGACTCA+CGG - chr6.1:61702765-61702784 MS.gene54538:CDS 50.0%
AAGAGGGGCCGAAAAGCTTC+TGG - chr6.1:61701455-61701474 MS.gene54538:CDS 55.0%
AGCTAGTGGTGGTCGGAAGA+GGG - chr6.1:61701439-61701458 MS.gene54538:CDS 55.0%
CTGGGTGATAAACCACGGGA+AGG + chr6.1:61702114-61702133 None:intergenic 55.0%
CTTCCCGTGGTTTATCACCC+AGG - chr6.1:61702112-61702131 MS.gene54538:CDS 55.0%
GAGGATGGTTCTTCAGGCTC+AGG - chr6.1:61701368-61701387 MS.gene54538:CDS 55.0%
GCTAGTGTTCCAGCTAGTGG+TGG - chr6.1:61701428-61701447 MS.gene54538:CDS 55.0%
GTGACAGAACCTTCCCAACC+AGG + chr6.1:61702758-61702777 None:intergenic 55.0%
GTGTTCCAGCTAGTGGTGGT+CGG - chr6.1:61701432-61701451 MS.gene54538:CDS 55.0%
TCTTTGGCCGGAACATGTGC+AGG + chr6.1:61702647-61702666 None:intergenic 55.0%
! CGTTGGATCAAAGGCGTGTC+TGG - chr6.1:61702915-61702934 MS.gene54538:CDS 55.0%
!! AGGTTCTGTCACCGACTCAC+GGG - chr6.1:61702766-61702785 MS.gene54538:CDS 55.0%
!! CACCGACTCACGGGTGTTAA+AGG - chr6.1:61702775-61702794 MS.gene54538:CDS 55.0%
CAGCTAGTGGTGGTCGGAAG+AGG - chr6.1:61701438-61701457 MS.gene54538:CDS 60.0%
CAGGAGCGGTTTCAGCACTC+AGG - chr6.1:61702339-61702358 MS.gene54538:intron 60.0%
CTCTTCCGACCACCACTAGC+TGG + chr6.1:61701440-61701459 None:intergenic 60.0%
GAATCACCCTAATGCCCGGG+AGG - chr6.1:61701646-61701665 MS.gene54538:CDS 60.0%
GCTAGTGGTGGTCGGAAGAG+GGG - chr6.1:61701440-61701459 MS.gene54538:CDS 60.0%
!! CGTGTCAGTGTCGACCGTGT+CGG + chr6.1:61702944-61702963 None:intergenic 60.0%
GAACTCGTTGCGGCTGCTGC+TGG - chr6.1:61702057-61702076 MS.gene54538:intron 65.0%
! GGCGTGTCTGGCTTCCGACA+CGG - chr6.1:61702927-61702946 MS.gene54538:CDS 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 61701348 61703590 61701348 ID=MS.gene54538
chr6.1 mRNA 61701348 61703590 61701348 ID=MS.gene54538.t1;Parent=MS.gene54538
chr6.1 exon 61703271 61703590 61703271 ID=MS.gene54538.t1.exon1;Parent=MS.gene54538.t1
chr6.1 CDS 61703271 61703590 61703271 ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1
chr6.1 exon 61702444 61702965 61702444 ID=MS.gene54538.t1.exon2;Parent=MS.gene54538.t1
chr6.1 CDS 61702444 61702965 61702444 ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1
chr6.1 exon 61702096 61702327 61702096 ID=MS.gene54538.t1.exon3;Parent=MS.gene54538.t1
chr6.1 CDS 61702096 61702327 61702096 ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1
chr6.1 exon 61701348 61701820 61701348 ID=MS.gene54538.t1.exon4;Parent=MS.gene54538.t1
chr6.1 CDS 61701348 61701820 61701348 ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1
Gene Sequence

>MS.gene54538

TGTTAATGGCTTTCGATGATGAGGATGGTTCTTCAGGCTCAGGAGATGATGCGAACATGTTAGACGGACACAAGCGTCAAGCTAGTGTTCCAGCTAGTGGTGGTCGGAAGAGGGGCCGAAAAGCTTCTGGTGATGCCATAGTGGATGCCATGATGCAGATAGCAGCTGCTTCAAAAATGAGGGCAAATGCAATTATGAAGAATGAGGACAAATTTTCAATAAGCAAGTGCATCAGTGTGTTGGATGAGATGCAAGGTCTTGATGAAAGGGTTTACTTTTTTGCTTTGGATTTGTTTGAGAATCACCCTAATGCCCGGGAGGTTTTCATCTCTATTAAGAGTGAAAAAAGAATGCCATGGTTGCAGGGAAAATTTTGTGTTTCCTCCATTTGAATCGTTTGAGAAAATCGTCCTTTTTTGTTTTTGGTTACGAATGGTCTCATACCTTTGTATAGTTAACTAGACTGCAAAGGAATGATGTTAGTTACTATATAACTAATTCGATTTTGTGCTCAAAGCCCATGTTAATCAATTTATATTTTGAATTTCTAATGCCAACATACCTCTGTTTTCAAACTAGATTTGTTTTATGCATGATTGGAATTGGAATGCTTTATATCAACTAGATATATCAGAAAGAAGTTTTGAAGTTTATTTTTACAGATACACCAATCAGCATGGGTGATATTGACATGGAATTGGATGAGATGGAACTCGTTGCGGCTGCTGCTGGATACTATTATTATAGCTCTCTAACAAAACAGCCTTCCCGTGGTTTATCACCCAGGAGATGTGGATTTATGGCAGAAGTGCTGAATGGACACGATGACTTTTGTCGTGAAATGTTGCGGATGGACAGACATGTATTTCAGAAGCTGTGTGGCATTTTCCGCCAAAGAGCCATGTTACGTGATACTTCTGGTGTAATGATAGAAGAGCAGTTAGCGATATTTTTAAACGTCATTGGCCATAGTGAACGTAATAGAGTGATTCAGGAGCGGTTTCAGCACTCAGGTGAAACTATTAGCCGACATTTTAATAATGTATTGAAAGCTATTAAATCACTATCGCGTGAATTTTTGCAACCTCCTGAGGATACAACATCACCAGAAATTCTCAACAGTGCTAGATTTTATCCATATTTCAAGGTCTGAATGATCTTTTAGCTACTTCTTCCATATTAGTATGATCTTTTAAGTTTTCCCTGTTTATCACTCTATGTGCTACTTTACTGACTTTTCCCATCTCCCTACTATTATTTCAGGATTGTATAGGAGTAATTGATGGTATGCAAATTCCTGCACATGTTCCGGCCAAAGATCAATCTCGATTTCGCAATAAGAAAGGCATCCTATCTCAAAATGTGCTTGCAGCTTGCACATTTGACCTTCAGTTTATATTCATTTTTCCTGGTTGGGAAGGTTCTGTCACCGACTCACGGGTGTTAAAGGCAGTCCTTGATGACCCAGATCAGAATTTCCCACAAATTCCTCAAGGTTCGTTAGCATTTATGACTGTGATCTTGATTTCATTATCTGTCCTTGTCAGTTATCTGTGTAGTACAAACACGTTGGATCAAAGGCGTGTCTGGCTTCCGACACGGTCGACACTGACACGTGTATTACATTCAATTAATTAATTTTCTCAAATCATTATCAATATTCACTTGTCAATGTCGTGTTCAGTGTCCATGTGAGTTTGTGTTTCATAGGTTGTTACGCATTGCATTAAAAATAACTATTAATTTATTTCCTTTGGATTTGTTTCATAGGAAAGTATTACCTTGTTGACCAAGAATACTTAAATACAGAAGGATTTCTTGCTCCTTTTCAAGGGGTTCGGTACCAACCTTATGAGTTTAGAGGTGCTAATCACCTACCAAGAAATGCAAAGGAGTTGTTCAATCATAGGCATTGCTATCTGAGAAATACTATCTTAAGGTCATTTAATGTGTTGAAAACTAGATTCCCAATCATGAAACTTGCTCCTCAGTATTCTTTTCAGACTCAGCGGGATATAGTCATAGCTGCATGTGTTTTGCATAATTTCATCCGCCGTGAAGAAAGAAATGACTGGTTATTCAGTAGTTTAGGGGGGACATTCGTGGATGAACAATCAGATCCTGACGAACTTCCCGATGTTCAATTTATTTCTTCAATACCAGAACAGGTTGCATTCTCATTACGTGAATCAGTTTCTGCATCTATGTTTGACGACTTCTTGAATAAATGGGACGAGTGGTGA

Protein sequence

>MS.gene54538.t1

CUWLSMMRMVLQAQEMMRTCUTDTSVKLVFQLVVVGRGAEKLLVMPUWMPUCRUQLLQKUGQMQLURMRTNFQUASASVCWMRCKVLMKGFTFLLWICLRITLMPGRYIRKKFUSLFLQIHQSAWVILTWNWMRWNSLRLLLDTIIIALUQNSLPVVYHPGDVDLWQKCUMDTMTFVVKCCGWTDMYFRSCVAFSAKEPCYVILLVUUUKSSURYFUTSLAIVNVIEUFRSGFSTQVKLLADILIMYUKLLNHYRVNFCNLLRIQHHQKFSTVLDFIHISRIVUEULMVCKFLHMFRPKINLDFAIRKASYLKMCLQLAHLTFSLYSFFLVGKVLSPTHGCURQSLMTQIRISHKFLKESITLLTKNTUIQKDFLLLFKGFGTNLMSLEVLITYQEMQRSCSIIGIAIUEILSUGHLMCUKLDSQSUNLLLSILFRLSGIUSULHVFCIISSAVKKEMTGYSVVUGGHSWMNNQILTNFPMFNLFLQYQNRLHSHYVNQFLHLCLTTSUINGTSG