Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54538.t1 | XP_024642082.1 | 89.7 | 513 | 19 | 1 | 2 | 514 | 1 | 479 | 1.50E-253 | 885.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54538.t1 | Q17QR8 | 25.5 | 231 | 150 | 6 | 235 | 459 | 96 | 310 | 8.2e-11 | 70.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene54538.t1 | A0A396HHR3 | 89.7 | 513 | 19 | 1 | 2 | 514 | 1 | 479 | 1.1e-253 | 885.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049404 | MS.gene54538 | 0.803585 | 3.25E-49 | -1.69E-46 |
MS.gene049435 | MS.gene54538 | 0.821779 | 3.37E-53 | -1.69E-46 |
MS.gene049666 | MS.gene54538 | 0.828494 | 8.71E-55 | -1.69E-46 |
MS.gene049824 | MS.gene54538 | 0.807093 | 5.98E-50 | -1.69E-46 |
MS.gene049825 | MS.gene54538 | 0.803025 | 4.24E-49 | -1.69E-46 |
MS.gene049873 | MS.gene54538 | 0.820278 | 7.46E-53 | -1.69E-46 |
MS.gene050020 | MS.gene54538 | 0.802684 | 4.99E-49 | -1.69E-46 |
MS.gene050026 | MS.gene54538 | 0.81383 | 2.10E-51 | -1.69E-46 |
MS.gene050156 | MS.gene54538 | 0.809163 | 2.17E-50 | -1.69E-46 |
MS.gene050201 | MS.gene54538 | 0.814257 | 1.69E-51 | -1.69E-46 |
MS.gene050442 | MS.gene54538 | 0.830538 | 2.78E-55 | -1.69E-46 |
MS.gene051181 | MS.gene54538 | 0.80404 | 2.61E-49 | -1.69E-46 |
MS.gene051247 | MS.gene54538 | 0.815717 | 8.01E-52 | -1.69E-46 |
MS.gene051265 | MS.gene54538 | 0.823177 | 1.59E-53 | -1.69E-46 |
MS.gene051594 | MS.gene54538 | 0.83773 | 4.37E-57 | -1.69E-46 |
MS.gene051719 | MS.gene54538 | 0.83305 | 6.66E-56 | -1.69E-46 |
MS.gene051720 | MS.gene54538 | 0.806781 | 6.96E-50 | -1.69E-46 |
MS.gene051744 | MS.gene54538 | 0.819212 | 1.31E-52 | -1.69E-46 |
MS.gene052020 | MS.gene54538 | 0.808061 | 3.73E-50 | -1.69E-46 |
MS.gene052190 | MS.gene54538 | 0.859133 | 5.10E-63 | -1.69E-46 |
MS.gene052208 | MS.gene54538 | 0.801411 | 9.12E-49 | -1.69E-46 |
MS.gene052323 | MS.gene54538 | 0.808388 | 3.17E-50 | -1.69E-46 |
MS.gene052333 | MS.gene54538 | 0.820586 | 6.34E-53 | -1.69E-46 |
MS.gene052519 | MS.gene54538 | 0.821761 | 3.40E-53 | -1.69E-46 |
MS.gene052582 | MS.gene54538 | 0.828332 | 9.53E-55 | -1.69E-46 |
MS.gene052584 | MS.gene54538 | 0.837497 | 5.02E-57 | -1.69E-46 |
MS.gene052773 | MS.gene54538 | 0.824695 | 7.02E-54 | -1.69E-46 |
MS.gene052867 | MS.gene54538 | 0.806654 | 7.41E-50 | -1.69E-46 |
MS.gene053054 | MS.gene54538 | -0.844556 | 7.03E-59 | -1.69E-46 |
MS.gene053221 | MS.gene54538 | 0.824402 | 8.23E-54 | -1.69E-46 |
MS.gene053226 | MS.gene54538 | 0.85879 | 6.47E-63 | -1.69E-46 |
MS.gene053599 | MS.gene54538 | 0.802436 | 5.62E-49 | -1.69E-46 |
MS.gene05365 | MS.gene54538 | 0.806092 | 9.73E-50 | -1.69E-46 |
MS.gene053883 | MS.gene54538 | 0.813662 | 2.28E-51 | -1.69E-46 |
MS.gene053966 | MS.gene54538 | 0.818921 | 1.52E-52 | -1.69E-46 |
MS.gene05414 | MS.gene54538 | 0.810626 | 1.05E-50 | -1.69E-46 |
MS.gene05415 | MS.gene54538 | 0.815564 | 8.67E-52 | -1.69E-46 |
MS.gene054291 | MS.gene54538 | -0.84874 | 5.06E-60 | -1.69E-46 |
MS.gene054467 | MS.gene54538 | 0.810247 | 1.27E-50 | -1.69E-46 |
MS.gene054651 | MS.gene54538 | 0.801224 | 9.96E-49 | -1.69E-46 |
MS.gene054775 | MS.gene54538 | 0.829152 | 6.04E-55 | -1.69E-46 |
MS.gene055166 | MS.gene54538 | 0.808165 | 3.54E-50 | -1.69E-46 |
MS.gene055357 | MS.gene54538 | 0.831689 | 1.45E-55 | -1.69E-46 |
MS.gene055358 | MS.gene54538 | 0.808364 | 3.21E-50 | -1.69E-46 |
MS.gene055778 | MS.gene54538 | 0.849024 | 4.22E-60 | -1.69E-46 |
MS.gene055818 | MS.gene54538 | 0.85279 | 3.66E-61 | -1.69E-46 |
MS.gene056050 | MS.gene54538 | 0.825143 | 5.51E-54 | -1.69E-46 |
MS.gene056162 | MS.gene54538 | 0.806762 | 7.03E-50 | -1.69E-46 |
MS.gene056173 | MS.gene54538 | 0.841898 | 3.59E-58 | -1.69E-46 |
MS.gene056174 | MS.gene54538 | 0.8067 | 7.24E-50 | -1.69E-46 |
MS.gene056366 | MS.gene54538 | 0.84768 | 9.92E-60 | -1.69E-46 |
MS.gene056498 | MS.gene54538 | 0.822628 | 2.14E-53 | -1.69E-46 |
MS.gene056506 | MS.gene54538 | 0.816727 | 4.76E-52 | -1.69E-46 |
MS.gene056643 | MS.gene54538 | 0.806755 | 7.05E-50 | -1.69E-46 |
MS.gene057060 | MS.gene54538 | 0.852445 | 4.59E-61 | -1.69E-46 |
MS.gene057314 | MS.gene54538 | 0.832615 | 8.54E-56 | -1.69E-46 |
MS.gene057414 | MS.gene54538 | 0.804457 | 2.14E-49 | -1.69E-46 |
MS.gene057598 | MS.gene54538 | 0.813583 | 2.38E-51 | -1.69E-46 |
MS.gene057693 | MS.gene54538 | 0.81543 | 9.28E-52 | -1.69E-46 |
MS.gene057915 | MS.gene54538 | 0.806943 | 6.43E-50 | -1.69E-46 |
MS.gene058037 | MS.gene54538 | 0.800412 | 1.46E-48 | -1.69E-46 |
MS.gene058625 | MS.gene54538 | 0.826045 | 3.37E-54 | -1.69E-46 |
MS.gene058636 | MS.gene54538 | 0.812902 | 3.36E-51 | -1.69E-46 |
MS.gene058829 | MS.gene54538 | 0.829113 | 6.17E-55 | -1.69E-46 |
MS.gene058979 | MS.gene54538 | 0.800767 | 1.23E-48 | -1.69E-46 |
MS.gene05954 | MS.gene54538 | 0.838355 | 3.02E-57 | -1.69E-46 |
MS.gene059584 | MS.gene54538 | 0.801112 | 1.05E-48 | -1.69E-46 |
MS.gene059607 | MS.gene54538 | 0.812111 | 5.00E-51 | -1.69E-46 |
MS.gene059625 | MS.gene54538 | 0.807589 | 4.70E-50 | -1.69E-46 |
MS.gene060137 | MS.gene54538 | -0.815331 | 9.77E-52 | -1.69E-46 |
MS.gene060429 | MS.gene54538 | 0.804123 | 2.51E-49 | -1.69E-46 |
MS.gene060521 | MS.gene54538 | 0.811453 | 6.95E-51 | -1.69E-46 |
MS.gene060553 | MS.gene54538 | 0.827963 | 1.17E-54 | -1.69E-46 |
MS.gene060572 | MS.gene54538 | 0.815705 | 8.06E-52 | -1.69E-46 |
MS.gene060634 | MS.gene54538 | -0.834793 | 2.44E-56 | -1.69E-46 |
MS.gene060803 | MS.gene54538 | 0.827768 | 1.30E-54 | -1.69E-46 |
MS.gene060918 | MS.gene54538 | 0.801736 | 7.82E-49 | -1.69E-46 |
MS.gene061040 | MS.gene54538 | -0.822858 | 1.89E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 109 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACGACTTCTTGAATAAA+TGG | 0.143416 | 6.1:-61701360 | MS.gene54538:CDS |
CTAGCACTGTTGAGAATTTC+TGG | 0.157165 | 6.1:+61702463 | None:intergenic |
AACAACTCCTTTGCATTTCT+TGG | 0.218146 | 6.1:+61701691 | None:intergenic |
CTTCTGTATTTAAGTATTCT+TGG | 0.218368 | 6.1:+61701779 | None:intergenic |
ACCCAGGAGATGTGGATTTA+TGG | 0.249166 | 6.1:-61702788 | MS.gene54538:CDS |
GACTGGTTATTCAGTAGTTT+AGG | 0.261552 | 6.1:-61701499 | MS.gene54538:CDS |
CACCGACTCACGGGTGTTAA+AGG | 0.267503 | 6.1:-61702141 | MS.gene54538:CDS |
ATGAAAACCTCCCGGGCATT+AGG | 0.298800 | 6.1:+61703263 | None:intergenic |
ATCATTCAGACCTTGAAATA+TGG | 0.304552 | 6.1:+61702433 | None:intergenic |
AATGAGAATGCAACCTGTTC+TGG | 0.328101 | 6.1:+61701409 | None:intergenic |
TGAACGTAATAGAGTGATTC+AGG | 0.333897 | 6.1:-61702596 | MS.gene54538:CDS |
GATGATGAGGATGGTTCTTC+AGG | 0.349700 | 6.1:-61703554 | MS.gene54538:CDS |
CTATTATTTCAGGATTGTAT+AGG | 0.362544 | 6.1:-61702317 | MS.gene54538:intron |
ACTGGTTATTCAGTAGTTTA+GGG | 0.364419 | 6.1:-61701498 | MS.gene54538:CDS |
GCAAATTCCTGCACATGTTC+CGG | 0.367277 | 6.1:-61702279 | MS.gene54538:CDS |
AAGAGGGGCCGAAAAGCTTC+TGG | 0.377408 | 6.1:-61703461 | MS.gene54538:CDS |
CAAAGGAGTTGTTCAATCAT+AGG | 0.383328 | 6.1:-61701681 | MS.gene54538:CDS |
GAACTCGTTGCGGCTGCTGC+TGG | 0.386586 | 6.1:-61702859 | MS.gene54538:CDS |
TGCCATAAATCCACATCTCC+TGG | 0.393862 | 6.1:+61702786 | None:intergenic |
CAGCTAGTGGTGGTCGGAAG+AGG | 0.397609 | 6.1:-61703478 | MS.gene54538:CDS |
GCGAAATCGAGATTGATCTT+TGG | 0.398795 | 6.1:+61702256 | None:intergenic |
ACCAGTCATTTCTTTCTTCA+CGG | 0.401217 | 6.1:+61701515 | None:intergenic |
ATTTGTGGGAAATTCTGATC+TGG | 0.404418 | 6.1:+61702104 | None:intergenic |
CTGCATCATGGCATCCACTA+TGG | 0.407457 | 6.1:+61703433 | None:intergenic |
TGAAAACCTCCCGGGCATTA+GGG | 0.410829 | 6.1:+61703264 | None:intergenic |
TATTTCTTCAATACCAGAAC+AGG | 0.414037 | 6.1:-61701422 | MS.gene54538:CDS |
TATCACGTAACATGGCTCTT+TGG | 0.418711 | 6.1:+61702677 | None:intergenic |
TACCAACCTTATGAGTTTAG+AGG | 0.421610 | 6.1:-61701727 | MS.gene54538:CDS |
TGACGACTTCTTGAATAAAT+GGG | 0.432370 | 6.1:-61701359 | MS.gene54538:CDS |
TGAGGAGCAAGTTTCATGAT+TGG | 0.432849 | 6.1:+61701601 | None:intergenic |
AACGAACCTTGAGGAATTTG+TGG | 0.440004 | 6.1:+61702089 | None:intergenic |
TCAATACATTATTAAAATGT+CGG | 0.443527 | 6.1:+61702542 | None:intergenic |
GAAGAAATAAATTGAACATC+GGG | 0.447295 | 6.1:+61701436 | None:intergenic |
AGCTAGTGGTGGTCGGAAGA+GGG | 0.455554 | 6.1:-61703477 | MS.gene54538:CDS |
GCCATGTTACGTGATACTTC+TGG | 0.460394 | 6.1:-61702670 | MS.gene54538:CDS |
TCACTCTATTACGTTCACTA+TGG | 0.463287 | 6.1:+61702602 | None:intergenic |
GGGTGATATTGACATGGAAT+TGG | 0.463892 | 6.1:-61702890 | MS.gene54538:CDS |
TCTGGTGATGTTGTATCCTC+AGG | 0.466979 | 6.1:+61702481 | None:intergenic |
GAGGAGCAAGTTTCATGATT+GGG | 0.469428 | 6.1:+61701602 | None:intergenic |
TGAACATCGGGAAGTTCGTC+AGG | 0.474711 | 6.1:+61701448 | None:intergenic |
CTCTTCCGACCACCACTAGC+TGG | 0.483214 | 6.1:+61703479 | None:intergenic |
TCTTTGGCCGGAACATGTGC+AGG | 0.489674 | 6.1:+61702272 | None:intergenic |
ATCTGAGAAATACTATCTTA+AGG | 0.491213 | 6.1:-61701651 | MS.gene54538:CDS |
GAGGATGGTTCTTCAGGCTC+AGG | 0.500473 | 6.1:-61703548 | MS.gene54538:CDS |
ACGAACCTTGAGGAATTTGT+GGG | 0.504423 | 6.1:+61702090 | None:intergenic |
TTGAGAATCACCCTAATGCC+CGG | 0.506051 | 6.1:-61703274 | MS.gene54538:CDS |
TGACATGGAATTGGATGAGA+TGG | 0.507251 | 6.1:-61702881 | MS.gene54538:CDS |
GATGCAAGGTCTTGATGAAA+GGG | 0.513593 | 6.1:-61703321 | MS.gene54538:CDS |
TTTGTGGGAAATTCTGATCT+GGG | 0.513968 | 6.1:+61702105 | None:intergenic |
TTAGCACCTCTAAACTCATA+AGG | 0.519230 | 6.1:+61701721 | None:intergenic |
TGGTACCGAACCCCTTGAAA+AGG | 0.519547 | 6.1:+61701745 | None:intergenic |
TCTCGATTTCGCAATAAGAA+AGG | 0.526197 | 6.1:-61702245 | MS.gene54538:CDS |
CACGTAACATGGCTCTTTGG+CGG | 0.527673 | 6.1:+61702680 | None:intergenic |
ACTCCTTTGCATTTCTTGGT+AGG | 0.527692 | 6.1:+61701695 | None:intergenic |
TACAGATACACCAATCAGCA+TGG | 0.529586 | 6.1:-61702911 | MS.gene54538:CDS |
AGATGCAAGGTCTTGATGAA+AGG | 0.540422 | 6.1:-61703322 | MS.gene54538:CDS |
AATTCTGATCTGGGTCATCA+AGG | 0.542424 | 6.1:+61702114 | None:intergenic |
AAGGTTCTGTCACCGACTCA+CGG | 0.543196 | 6.1:-61702151 | MS.gene54538:CDS |
AATCGAGATTGATCTTTGGC+CGG | 0.545496 | 6.1:+61702260 | None:intergenic |
GATTGTATAGGAGTAATTGA+TGG | 0.547687 | 6.1:-61702305 | MS.gene54538:CDS |
TCAATATCACCCATGCTGAT+TGG | 0.548167 | 6.1:+61702901 | None:intergenic |
AGGTTCTGTCACCGACTCAC+GGG | 0.562802 | 6.1:-61702150 | MS.gene54538:CDS |
CAAGCTAGTGTTCCAGCTAG+TGG | 0.563625 | 6.1:-61703491 | MS.gene54538:CDS |
GGTTTATCACCCAGGAGATG+TGG | 0.563874 | 6.1:-61702796 | MS.gene54538:CDS |
CAGGAGCGGTTTCAGCACTC+AGG | 0.566031 | 6.1:-61702577 | MS.gene54538:CDS |
GCCATAAATCCACATCTCCT+GGG | 0.566505 | 6.1:+61702787 | None:intergenic |
AGCAGCTGCTATCTGCATCA+TGG | 0.570810 | 6.1:+61703421 | None:intergenic |
AGCTTCTGGTGATGCCATAG+TGG | 0.573165 | 6.1:-61703447 | MS.gene54538:CDS |
CAAGAATACTTAAATACAGA+AGG | 0.573953 | 6.1:-61701778 | MS.gene54538:CDS |
AATAGAGATGAAAACCTCCC+GGG | 0.577351 | 6.1:+61703256 | None:intergenic |
TGAAGAAATAAATTGAACAT+CGG | 0.577543 | 6.1:+61701435 | None:intergenic |
GTGACAGAACCTTCCCAACC+AGG | 0.582402 | 6.1:+61702161 | None:intergenic |
AAATGCAATTATGAAGAATG+AGG | 0.583203 | 6.1:-61703384 | MS.gene54538:CDS |
CTTCCCGTGGTTTATCACCC+AGG | 0.584887 | 6.1:-61702804 | MS.gene54538:CDS |
GCTAGTGGTGGTCGGAAGAG+GGG | 0.585645 | 6.1:-61703476 | MS.gene54538:CDS |
ATGGCTTTCGATGATGAGGA+TGG | 0.589950 | 6.1:-61703563 | MS.gene54538:CDS |
CAGCATGGGTGATATTGACA+TGG | 0.591176 | 6.1:-61702896 | MS.gene54538:CDS |
TGAGAATCACCCTAATGCCC+GGG | 0.591855 | 6.1:-61703273 | MS.gene54538:CDS |
CTGGTTATTCAGTAGTTTAG+GGG | 0.592004 | 6.1:-61701497 | MS.gene54538:CDS |
CACCTCTAAACTCATAAGGT+TGG | 0.594202 | 6.1:+61701725 | None:intergenic |
TTTATGGCAGAAGTGCTGAA+TGG | 0.597101 | 6.1:-61702772 | MS.gene54538:CDS |
AAGCAAGTGCATCAGTGTGT+TGG | 0.597279 | 6.1:-61703348 | MS.gene54538:CDS |
TGGTTATTCAGTAGTTTAGG+GGG | 0.599818 | 6.1:-61701496 | MS.gene54538:CDS |
AATTTCCCACAAATTCCTCA+AGG | 0.601774 | 6.1:-61702095 | MS.gene54538:intron |
ACAGATACACCAATCAGCAT+GGG | 0.605365 | 6.1:-61702910 | MS.gene54538:CDS |
TGCCTTTAACACCCGTGAGT+CGG | 0.605648 | 6.1:+61702139 | None:intergenic |
TTAAGTATTCTTGGTCAACA+AGG | 0.607070 | 6.1:+61701788 | None:intergenic |
TTGTCGTGAAATGTTGCGGA+TGG | 0.607611 | 6.1:-61702737 | MS.gene54538:CDS |
TCACCTACCAAGAAATGCAA+AGG | 0.607831 | 6.1:-61701698 | MS.gene54538:CDS |
GTGTTCCAGCTAGTGGTGGT+CGG | 0.615184 | 6.1:-61703484 | MS.gene54538:CDS |
ATCTCCTGGGTGATAAACCA+CGG | 0.624115 | 6.1:+61702800 | None:intergenic |
ACCAGAAGTATCACGTAACA+TGG | 0.625814 | 6.1:+61702669 | None:intergenic |
GATGATGCGAACATGTTAGA+CGG | 0.630185 | 6.1:-61703524 | MS.gene54538:CDS |
GGTGATGTTGTATCCTCAGG+AGG | 0.631551 | 6.1:+61702484 | None:intergenic |
CTAACAAAACAGCCTTCCCG+TGG | 0.634429 | 6.1:-61702817 | MS.gene54538:CDS |
GTTAATGGCTTTCGATGATG+AGG | 0.645112 | 6.1:-61703567 | MS.gene54538:CDS |
TCTCCTGGGTGATAAACCAC+GGG | 0.646361 | 6.1:+61702801 | None:intergenic |
GCTAGTGTTCCAGCTAGTGG+TGG | 0.652322 | 6.1:-61703488 | MS.gene54538:CDS |
CTGGGTGATAAACCACGGGA+AGG | 0.661556 | 6.1:+61702805 | None:intergenic |
GGTTATTCAGTAGTTTAGGG+GGG | 0.667813 | 6.1:-61701495 | MS.gene54538:CDS |
GGATGAGATGGAACTCGTTG+CGG | 0.671380 | 6.1:-61702869 | MS.gene54538:CDS |
GTAATAGAGTGATTCAGGAG+CGG | 0.681046 | 6.1:-61702591 | MS.gene54538:CDS |
TCTTGAATAAATGGGACGAG+TGG | 0.681165 | 6.1:-61701351 | MS.gene54538:CDS |
CATGTATTTCAGAAGCTGTG+TGG | 0.686088 | 6.1:-61702709 | MS.gene54538:CDS |
GCCGTGAAGAAAGAAATGAC+TGG | 0.693527 | 6.1:-61701516 | MS.gene54538:CDS |
TGAGTCTGAAAAGAATACTG+AGG | 0.711551 | 6.1:+61701583 | None:intergenic |
GAATCACCCTAATGCCCGGG+AGG | 0.714237 | 6.1:-61703270 | MS.gene54538:intron |
AGTCATTTCTTTCTTCACGG+CGG | 0.739854 | 6.1:+61701518 | None:intergenic |
AGTGTGTTGGATGAGATGCA+AGG | 0.751749 | 6.1:-61703335 | MS.gene54538:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATATAAATTGATTAACA+TGG | + | chr6.1:61701869-61701888 | None:intergenic | 10.0% |
!! | AAATATAAATTGATTAACAT+GGG | + | chr6.1:61701868-61701887 | None:intergenic | 10.0% |
!! | AACTATTAATTTATTTCCTT+TGG | - | chr6.1:61703082-61703101 | MS.gene54538:intron | 15.0% |
!! | TCAATACATTATTAAAATGT+CGG | + | chr6.1:61702377-61702396 | None:intergenic | 15.0% |
!! | CTTAAAAGATCATACTAATA+TGG | + | chr6.1:61702525-61702544 | None:intergenic | 20.0% |
!! | GAAAAATGAATATAAACTGA+AGG | + | chr6.1:61702736-61702755 | None:intergenic | 20.0% |
!! | TGAAGAAATAAATTGAACAT+CGG | + | chr6.1:61703484-61703503 | None:intergenic | 20.0% |
!!! | TAGATTTTATCCATATTTCA+AGG | - | chr6.1:61702473-61702492 | MS.gene54538:CDS | 20.0% |
! | AAATGCAATTATGAAGAATG+AGG | - | chr6.1:61701532-61701551 | MS.gene54538:CDS | 25.0% |
! | ACAATCCTGAAATAATAGTA+GGG | + | chr6.1:61702597-61702616 | None:intergenic | 25.0% |
! | ATCTGAGAAATACTATCTTA+AGG | - | chr6.1:61703265-61703284 | MS.gene54538:intron | 25.0% |
! | CAAGAATACTTAAATACAGA+AGG | - | chr6.1:61703138-61703157 | MS.gene54538:intron | 25.0% |
! | CTATTATTTCAGGATTGTAT+AGG | - | chr6.1:61702599-61702618 | MS.gene54538:CDS | 25.0% |
! | CTTCTGTATTTAAGTATTCT+TGG | + | chr6.1:61703140-61703159 | None:intergenic | 25.0% |
! | GAAGAAATAAATTGAACATC+GGG | + | chr6.1:61703483-61703502 | None:intergenic | 25.0% |
! | TACAATCCTGAAATAATAGT+AGG | + | chr6.1:61702598-61702617 | None:intergenic | 25.0% |
! | TTCGTAACCAAAAACAAAAA+AGG | + | chr6.1:61701761-61701780 | None:intergenic | 25.0% |
!! | ATTTTCTCAAACGATTCAAA+TGG | + | chr6.1:61701735-61701754 | None:intergenic | 25.0% |
!!! | AAATCGTCCTTTTTTGTTTT+TGG | - | chr6.1:61701751-61701770 | MS.gene54538:CDS | 25.0% |
!!! | AGATTTGTTTTATGCATGAT+TGG | - | chr6.1:61701925-61701944 | MS.gene54538:intron | 25.0% |
!!! | CAGTTTATATTCATTTTTCC+TGG | - | chr6.1:61702737-61702756 | MS.gene54538:CDS | 25.0% |
!!! | TATATTCATTTTTCCTGGTT+GGG | - | chr6.1:61702742-61702761 | MS.gene54538:CDS | 25.0% |
!!! | TTATATTCATTTTTCCTGGT+TGG | - | chr6.1:61702741-61702760 | MS.gene54538:CDS | 25.0% |
!!! | TTTTTGTTTTTGGTTACGAA+TGG | - | chr6.1:61701761-61701780 | MS.gene54538:CDS | 25.0% |
ACTGGTTATTCAGTAGTTTA+GGG | - | chr6.1:61703418-61703437 | MS.gene54538:CDS | 30.0% | |
ATCATTCAGACCTTGAAATA+TGG | + | chr6.1:61702486-61702505 | None:intergenic | 30.0% | |
CAGTCTAGTTAACTATACAA+AGG | + | chr6.1:61701794-61701813 | None:intergenic | 30.0% | |
GATTGTATAGGAGTAATTGA+TGG | - | chr6.1:61702611-61702630 | MS.gene54538:CDS | 30.0% | |
TATAGTTAACTAGACTGCAA+AGG | - | chr6.1:61701797-61701816 | MS.gene54538:CDS | 30.0% | |
TATTTCTTCAATACCAGAAC+AGG | - | chr6.1:61703494-61703513 | MS.gene54538:CDS | 30.0% | |
TGAAATAATAGTAGGGAGAT+GGG | + | chr6.1:61702590-61702609 | None:intergenic | 30.0% | |
TGACGACTTCTTGAATAAAT+GGG | - | chr6.1:61703557-61703576 | MS.gene54538:CDS | 30.0% | |
TTAAGTATTCTTGGTCAACA+AGG | + | chr6.1:61703131-61703150 | None:intergenic | 30.0% | |
TTCCTATGAAACAAATCCAA+AGG | + | chr6.1:61703101-61703120 | None:intergenic | 30.0% | |
TTGACGACTTCTTGAATAAA+TGG | - | chr6.1:61703556-61703575 | MS.gene54538:CDS | 30.0% | |
! | CAAATCTAGTTTGAAAACAG+AGG | + | chr6.1:61701912-61701931 | None:intergenic | 30.0% |
! | GTTTTATGCATGATTGGAAT+TGG | - | chr6.1:61701931-61701950 | MS.gene54538:intron | 30.0% |
! | TTCCTTTGGATTTGTTTCAT+AGG | - | chr6.1:61703096-61703115 | MS.gene54538:intron | 30.0% |
!! | GCGATATTTTTAAACGTCAT+TGG | - | chr6.1:61702291-61702310 | MS.gene54538:CDS | 30.0% |
!!! | AAGGGTTTACTTTTTTGCTT+TGG | - | chr6.1:61701613-61701632 | MS.gene54538:CDS | 30.0% |
AACAACTCCTTTGCATTTCT+TGG | + | chr6.1:61703228-61703247 | None:intergenic | 35.0% | |
AATTTCCCACAAATTCCTCA+AGG | - | chr6.1:61702821-61702840 | MS.gene54538:CDS | 35.0% | |
ACCAGTCATTTCTTTCTTCA+CGG | + | chr6.1:61703404-61703423 | None:intergenic | 35.0% | |
AGAGTGAAAAAAGAATGCCA+TGG | - | chr6.1:61701684-61701703 | MS.gene54538:CDS | 35.0% | |
AGCACATAGAGTGATAAACA+GGG | + | chr6.1:61702552-61702571 | None:intergenic | 35.0% | |
ATAAATGCTAACGAACCTTG+AGG | + | chr6.1:61702839-61702858 | None:intergenic | 35.0% | |
ATTTGTGGGAAATTCTGATC+TGG | + | chr6.1:61702815-61702834 | None:intergenic | 35.0% | |
CAAAGGAGTTGTTCAATCAT+AGG | - | chr6.1:61703235-61703254 | MS.gene54538:intron | 35.0% | |
CATCTCCCTACTATTATTTC+AGG | - | chr6.1:61702589-61702608 | MS.gene54538:CDS | 35.0% | |
CATGTGAGTTTGTGTTTCAT+AGG | - | chr6.1:61703036-61703055 | MS.gene54538:intron | 35.0% | |
CTATGAAACACAAACTCACA+TGG | + | chr6.1:61703038-61703057 | None:intergenic | 35.0% | |
CTGAAATAATAGTAGGGAGA+TGG | + | chr6.1:61702591-61702610 | None:intergenic | 35.0% | |
CTGGTTATTCAGTAGTTTAG+GGG | - | chr6.1:61703419-61703438 | MS.gene54538:CDS | 35.0% | |
TAATAGAGATGAAAACCTCC+CGG | + | chr6.1:61701664-61701683 | None:intergenic | 35.0% | |
TACCAACCTTATGAGTTTAG+AGG | - | chr6.1:61703189-61703208 | MS.gene54538:intron | 35.0% | |
TACTACACAGATAACTGACA+AGG | + | chr6.1:61702889-61702908 | None:intergenic | 35.0% | |
TAGCACATAGAGTGATAAAC+AGG | + | chr6.1:61702553-61702572 | None:intergenic | 35.0% | |
TCACTCTATTACGTTCACTA+TGG | + | chr6.1:61702317-61702336 | None:intergenic | 35.0% | |
TCTCGATTTCGCAATAAGAA+AGG | - | chr6.1:61702671-61702690 | MS.gene54538:CDS | 35.0% | |
TGAACGTAATAGAGTGATTC+AGG | - | chr6.1:61702320-61702339 | MS.gene54538:intron | 35.0% | |
TGAGTCTGAAAAGAATACTG+AGG | + | chr6.1:61703336-61703355 | None:intergenic | 35.0% | |
TGGTTATTCAGTAGTTTAGG+GGG | - | chr6.1:61703420-61703439 | MS.gene54538:CDS | 35.0% | |
TTAGCACCTCTAAACTCATA+AGG | + | chr6.1:61703198-61703217 | None:intergenic | 35.0% | |
TTCTCAAACGATTCAAATGG+AGG | + | chr6.1:61701732-61701751 | None:intergenic | 35.0% | |
TTTGTGGGAAATTCTGATCT+GGG | + | chr6.1:61702814-61702833 | None:intergenic | 35.0% | |
! | ACTTTTGTCGTGAAATGTTG+CGG | - | chr6.1:61702175-61702194 | MS.gene54538:CDS | 35.0% |
! | AGTATTCTTTTCAGACTCAG+CGG | - | chr6.1:61703337-61703356 | MS.gene54538:CDS | 35.0% |
! | GACTGGTTATTCAGTAGTTT+AGG | - | chr6.1:61703417-61703436 | MS.gene54538:CDS | 35.0% |
! | GATTTCTTGCTCCTTTTCAA+GGG | - | chr6.1:61703160-61703179 | MS.gene54538:intron | 35.0% |
! | GTTTGAAAACAGAGGTATGT+TGG | + | chr6.1:61701904-61701923 | None:intergenic | 35.0% |
!! | ATTTCTTGCTCCTTTTCAAG+GGG | - | chr6.1:61703161-61703180 | MS.gene54538:intron | 35.0% |
AAAAAGAATGCCATGGTTGC+AGG | - | chr6.1:61701691-61701710 | MS.gene54538:CDS | 40.0% | |
AAAAGAATGCCATGGTTGCA+GGG | - | chr6.1:61701692-61701711 | MS.gene54538:CDS | 40.0% | |
AACGAACCTTGAGGAATTTG+TGG | + | chr6.1:61702830-61702849 | None:intergenic | 40.0% | |
AATAGAGATGAAAACCTCCC+GGG | + | chr6.1:61701663-61701682 | None:intergenic | 40.0% | |
AATCGAGATTGATCTTTGGC+CGG | + | chr6.1:61702659-61702678 | None:intergenic | 40.0% | |
AATGAGAATGCAACCTGTTC+TGG | + | chr6.1:61703510-61703529 | None:intergenic | 40.0% | |
AATTCTGATCTGGGTCATCA+AGG | + | chr6.1:61702805-61702824 | None:intergenic | 40.0% | |
ACAGATACACCAATCAGCAT+GGG | - | chr6.1:61702006-61702025 | MS.gene54538:intron | 40.0% | |
ACGAACCTTGAGGAATTTGT+GGG | + | chr6.1:61702829-61702848 | None:intergenic | 40.0% | |
ACTCCTTTGCATTTCTTGGT+AGG | + | chr6.1:61703224-61703243 | None:intergenic | 40.0% | |
AGATGCAAGGTCTTGATGAA+AGG | - | chr6.1:61701594-61701613 | MS.gene54538:CDS | 40.0% | |
AGCAGCTGCTTCAAAAATGA+GGG | - | chr6.1:61701508-61701527 | MS.gene54538:CDS | 40.0% | |
AGTCATTTCTTTCTTCACGG+CGG | + | chr6.1:61703401-61703420 | None:intergenic | 40.0% | |
CACCTCTAAACTCATAAGGT+TGG | + | chr6.1:61703194-61703213 | None:intergenic | 40.0% | |
CATGTATTTCAGAAGCTGTG+TGG | - | chr6.1:61702207-61702226 | MS.gene54538:CDS | 40.0% | |
CTAGCACTGTTGAGAATTTC+TGG | + | chr6.1:61702456-61702475 | None:intergenic | 40.0% | |
GAGGAGCAAGTTTCATGATT+GGG | + | chr6.1:61703317-61703336 | None:intergenic | 40.0% | |
GATGATGCGAACATGTTAGA+CGG | - | chr6.1:61701392-61701411 | MS.gene54538:CDS | 40.0% | |
GATGCAAGGTCTTGATGAAA+GGG | - | chr6.1:61701595-61701614 | MS.gene54538:CDS | 40.0% | |
GCGAAATCGAGATTGATCTT+TGG | + | chr6.1:61702663-61702682 | None:intergenic | 40.0% | |
GGGTGATATTGACATGGAAT+TGG | - | chr6.1:61702026-61702045 | MS.gene54538:intron | 40.0% | |
GGTTATTCAGTAGTTTAGGG+GGG | - | chr6.1:61703421-61703440 | MS.gene54538:CDS | 40.0% | |
GTAATAGAGTGATTCAGGAG+CGG | - | chr6.1:61702325-61702344 | MS.gene54538:intron | 40.0% | |
GTACAAACACGTTGGATCAA+AGG | - | chr6.1:61702906-61702925 | MS.gene54538:CDS | 40.0% | |
GTTAATGGCTTTCGATGATG+AGG | - | chr6.1:61701349-61701368 | MS.gene54538:CDS | 40.0% | |
TACAGATACACCAATCAGCA+TGG | - | chr6.1:61702005-61702024 | MS.gene54538:intron | 40.0% | |
TAGCAGCTGCTTCAAAAATG+AGG | - | chr6.1:61701507-61701526 | MS.gene54538:CDS | 40.0% | |
TATCACGTAACATGGCTCTT+TGG | + | chr6.1:61702242-61702261 | None:intergenic | 40.0% | |
TCAATATCACCCATGCTGAT+TGG | + | chr6.1:61702018-61702037 | None:intergenic | 40.0% | |
TCACCTACCAAGAAATGCAA+AGG | - | chr6.1:61703218-61703237 | MS.gene54538:intron | 40.0% | |
TCTGTGTAGTACAAACACGT+TGG | - | chr6.1:61702898-61702917 | MS.gene54538:CDS | 40.0% | |
TCTTGAATAAATGGGACGAG+TGG | - | chr6.1:61703565-61703584 | MS.gene54538:CDS | 40.0% | |
TGACATGGAATTGGATGAGA+TGG | - | chr6.1:61702035-61702054 | MS.gene54538:intron | 40.0% | |
TGAGGAGCAAGTTTCATGAT+TGG | + | chr6.1:61703318-61703337 | None:intergenic | 40.0% | |
! | CAAAATTTTCCCTGCAACCA+TGG | + | chr6.1:61701704-61701723 | None:intergenic | 40.0% |
! | GGATTTCTTGCTCCTTTTCA+AGG | - | chr6.1:61703159-61703178 | MS.gene54538:intron | 40.0% |
! | GTATTCTTTTCAGACTCAGC+GGG | - | chr6.1:61703338-61703357 | MS.gene54538:CDS | 40.0% |
! | TGAATTTTTGCAACCTCCTG+AGG | - | chr6.1:61702419-61702438 | MS.gene54538:intron | 40.0% |
!! | ACCAGAAGTATCACGTAACA+TGG | + | chr6.1:61702250-61702269 | None:intergenic | 40.0% |
!! | TTCATTTTTCCTGGTTGGGA+AGG | - | chr6.1:61702746-61702765 | MS.gene54538:CDS | 40.0% |
!! | TTTATGGCAGAAGTGCTGAA+TGG | - | chr6.1:61702144-61702163 | MS.gene54538:CDS | 40.0% |
!!! | CTGCAAGCACATTTTGAGAT+AGG | + | chr6.1:61702700-61702719 | None:intergenic | 40.0% |
AAGCAAGTGCATCAGTGTGT+TGG | - | chr6.1:61701568-61701587 | MS.gene54538:CDS | 45.0% | |
ACCCAGGAGATGTGGATTTA+TGG | - | chr6.1:61702128-61702147 | MS.gene54538:CDS | 45.0% | |
AGTGTGTTGGATGAGATGCA+AGG | - | chr6.1:61701581-61701600 | MS.gene54538:CDS | 45.0% | |
ATCTCCTGGGTGATAAACCA+CGG | + | chr6.1:61702119-61702138 | None:intergenic | 45.0% | |
ATGGCTTTCGATGATGAGGA+TGG | - | chr6.1:61701353-61701372 | MS.gene54538:CDS | 45.0% | |
CAGCATGGGTGATATTGACA+TGG | - | chr6.1:61702020-61702039 | MS.gene54538:intron | 45.0% | |
GATGATGAGGATGGTTCTTC+AGG | - | chr6.1:61701362-61701381 | MS.gene54538:CDS | 45.0% | |
GCAAATTCCTGCACATGTTC+CGG | - | chr6.1:61702637-61702656 | MS.gene54538:CDS | 45.0% | |
GCCATAAATCCACATCTCCT+GGG | + | chr6.1:61702132-61702151 | None:intergenic | 45.0% | |
GCCATGTTACGTGATACTTC+TGG | - | chr6.1:61702246-61702265 | MS.gene54538:CDS | 45.0% | |
GCCGTGAAGAAAGAAATGAC+TGG | - | chr6.1:61703400-61703419 | MS.gene54538:CDS | 45.0% | |
TGCCATAAATCCACATCTCC+TGG | + | chr6.1:61702133-61702152 | None:intergenic | 45.0% | |
TTGAGAATCACCCTAATGCC+CGG | - | chr6.1:61701642-61701661 | MS.gene54538:CDS | 45.0% | |
TTGTCGTGAAATGTTGCGGA+TGG | - | chr6.1:61702179-61702198 | MS.gene54538:CDS | 45.0% | |
! | TCTGGTGATGTTGTATCCTC+AGG | + | chr6.1:61702438-61702457 | None:intergenic | 45.0% |
! | TGGCATCACCAGAAGCTTTT+CGG | + | chr6.1:61701466-61701485 | None:intergenic | 45.0% |
!! | TTGCTCCTTTTCAAGGGGTT+CGG | - | chr6.1:61703166-61703185 | MS.gene54538:intron | 45.0% |
AGCAGCTGCTATCTGCATCA+TGG | + | chr6.1:61701498-61701517 | None:intergenic | 50.0% | |
ATGAAAACCTCCCGGGCATT+AGG | + | chr6.1:61701656-61701675 | None:intergenic | 50.0% | |
CAAGCTAGTGTTCCAGCTAG+TGG | - | chr6.1:61701425-61701444 | MS.gene54538:CDS | 50.0% | |
CACGTAACATGGCTCTTTGG+CGG | + | chr6.1:61702239-61702258 | None:intergenic | 50.0% | |
CTAACAAAACAGCCTTCCCG+TGG | - | chr6.1:61702099-61702118 | MS.gene54538:CDS | 50.0% | |
CTGCATCATGGCATCCACTA+TGG | + | chr6.1:61701486-61701505 | None:intergenic | 50.0% | |
GGATGAGATGGAACTCGTTG+CGG | - | chr6.1:61702047-61702066 | MS.gene54538:intron | 50.0% | |
GGTGATGTTGTATCCTCAGG+AGG | + | chr6.1:61702435-61702454 | None:intergenic | 50.0% | |
GGTTTATCACCCAGGAGATG+TGG | - | chr6.1:61702120-61702139 | MS.gene54538:CDS | 50.0% | |
TAGTTTAGGGGGGACATTCG+TGG | - | chr6.1:61703431-61703450 | MS.gene54538:CDS | 50.0% | |
TCTCCTGGGTGATAAACCAC+GGG | + | chr6.1:61702118-61702137 | None:intergenic | 50.0% | |
TGAAAACCTCCCGGGCATTA+GGG | + | chr6.1:61701655-61701674 | None:intergenic | 50.0% | |
TGAACATCGGGAAGTTCGTC+AGG | + | chr6.1:61703471-61703490 | None:intergenic | 50.0% | |
TGAGAATCACCCTAATGCCC+GGG | - | chr6.1:61701643-61701662 | MS.gene54538:CDS | 50.0% | |
TGCCTTTAACACCCGTGAGT+CGG | + | chr6.1:61702780-61702799 | None:intergenic | 50.0% | |
! | AGCTTCTGGTGATGCCATAG+TGG | - | chr6.1:61701469-61701488 | MS.gene54538:CDS | 50.0% |
! | TGGTACCGAACCCCTTGAAA+AGG | + | chr6.1:61703174-61703193 | None:intergenic | 50.0% |
!! | AAGGTTCTGTCACCGACTCA+CGG | - | chr6.1:61702765-61702784 | MS.gene54538:CDS | 50.0% |
AAGAGGGGCCGAAAAGCTTC+TGG | - | chr6.1:61701455-61701474 | MS.gene54538:CDS | 55.0% | |
AGCTAGTGGTGGTCGGAAGA+GGG | - | chr6.1:61701439-61701458 | MS.gene54538:CDS | 55.0% | |
CTGGGTGATAAACCACGGGA+AGG | + | chr6.1:61702114-61702133 | None:intergenic | 55.0% | |
CTTCCCGTGGTTTATCACCC+AGG | - | chr6.1:61702112-61702131 | MS.gene54538:CDS | 55.0% | |
GAGGATGGTTCTTCAGGCTC+AGG | - | chr6.1:61701368-61701387 | MS.gene54538:CDS | 55.0% | |
GCTAGTGTTCCAGCTAGTGG+TGG | - | chr6.1:61701428-61701447 | MS.gene54538:CDS | 55.0% | |
GTGACAGAACCTTCCCAACC+AGG | + | chr6.1:61702758-61702777 | None:intergenic | 55.0% | |
GTGTTCCAGCTAGTGGTGGT+CGG | - | chr6.1:61701432-61701451 | MS.gene54538:CDS | 55.0% | |
TCTTTGGCCGGAACATGTGC+AGG | + | chr6.1:61702647-61702666 | None:intergenic | 55.0% | |
! | CGTTGGATCAAAGGCGTGTC+TGG | - | chr6.1:61702915-61702934 | MS.gene54538:CDS | 55.0% |
!! | AGGTTCTGTCACCGACTCAC+GGG | - | chr6.1:61702766-61702785 | MS.gene54538:CDS | 55.0% |
!! | CACCGACTCACGGGTGTTAA+AGG | - | chr6.1:61702775-61702794 | MS.gene54538:CDS | 55.0% |
CAGCTAGTGGTGGTCGGAAG+AGG | - | chr6.1:61701438-61701457 | MS.gene54538:CDS | 60.0% | |
CAGGAGCGGTTTCAGCACTC+AGG | - | chr6.1:61702339-61702358 | MS.gene54538:intron | 60.0% | |
CTCTTCCGACCACCACTAGC+TGG | + | chr6.1:61701440-61701459 | None:intergenic | 60.0% | |
GAATCACCCTAATGCCCGGG+AGG | - | chr6.1:61701646-61701665 | MS.gene54538:CDS | 60.0% | |
GCTAGTGGTGGTCGGAAGAG+GGG | - | chr6.1:61701440-61701459 | MS.gene54538:CDS | 60.0% | |
!! | CGTGTCAGTGTCGACCGTGT+CGG | + | chr6.1:61702944-61702963 | None:intergenic | 60.0% |
GAACTCGTTGCGGCTGCTGC+TGG | - | chr6.1:61702057-61702076 | MS.gene54538:intron | 65.0% | |
! | GGCGTGTCTGGCTTCCGACA+CGG | - | chr6.1:61702927-61702946 | MS.gene54538:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 61701348 | 61703590 | 61701348 | ID=MS.gene54538 |
chr6.1 | mRNA | 61701348 | 61703590 | 61701348 | ID=MS.gene54538.t1;Parent=MS.gene54538 |
chr6.1 | exon | 61703271 | 61703590 | 61703271 | ID=MS.gene54538.t1.exon1;Parent=MS.gene54538.t1 |
chr6.1 | CDS | 61703271 | 61703590 | 61703271 | ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1 |
chr6.1 | exon | 61702444 | 61702965 | 61702444 | ID=MS.gene54538.t1.exon2;Parent=MS.gene54538.t1 |
chr6.1 | CDS | 61702444 | 61702965 | 61702444 | ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1 |
chr6.1 | exon | 61702096 | 61702327 | 61702096 | ID=MS.gene54538.t1.exon3;Parent=MS.gene54538.t1 |
chr6.1 | CDS | 61702096 | 61702327 | 61702096 | ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1 |
chr6.1 | exon | 61701348 | 61701820 | 61701348 | ID=MS.gene54538.t1.exon4;Parent=MS.gene54538.t1 |
chr6.1 | CDS | 61701348 | 61701820 | 61701348 | ID=cds.MS.gene54538.t1;Parent=MS.gene54538.t1 |
Gene Sequence |
Protein sequence |