Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55321.t1 | XP_003613952.1 | 97.8 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 1.90E-120 | 441.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55321.t1 | Q9C4Z7 | 60.3 | 232 | 78 | 6 | 4 | 228 | 5 | 229 | 3.8e-64 | 246.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55321.t1 | G7JWN8 | 97.8 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 1.4e-120 | 441.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049260 | MS.gene55321 | 0.800867 | 1.18E-48 | -1.69E-46 |
| MS.gene049351 | MS.gene55321 | 0.833259 | 5.91E-56 | -1.69E-46 |
| MS.gene049491 | MS.gene55321 | 0.811553 | 6.61E-51 | -1.69E-46 |
| MS.gene049681 | MS.gene55321 | 0.81358 | 2.38E-51 | -1.69E-46 |
| MS.gene050231 | MS.gene55321 | 0.82051 | 6.60E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene55321 | 0.879266 | 1.43E-69 | -1.69E-46 |
| MS.gene050397 | MS.gene55321 | 0.818441 | 1.96E-52 | -1.69E-46 |
| MS.gene050560 | MS.gene55321 | 0.811807 | 5.82E-51 | -1.69E-46 |
| MS.gene050650 | MS.gene55321 | 0.823418 | 1.40E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene55321 | 0.82318 | 1.59E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene55321 | 0.823668 | 1.22E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene55321 | 0.808503 | 3.00E-50 | -1.69E-46 |
| MS.gene051255 | MS.gene55321 | 0.816395 | 5.65E-52 | -1.69E-46 |
| MS.gene051360 | MS.gene55321 | 0.848777 | 4.94E-60 | -1.69E-46 |
| MS.gene051387 | MS.gene55321 | 0.834421 | 3.03E-56 | -1.69E-46 |
| MS.gene051525 | MS.gene55321 | 0.826427 | 2.73E-54 | -1.69E-46 |
| MS.gene051582 | MS.gene55321 | 0.805043 | 1.61E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene55321 | 0.84162 | 4.26E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene55321 | -0.832098 | 1.15E-55 | -1.69E-46 |
| MS.gene052188 | MS.gene55321 | 0.820959 | 5.21E-53 | -1.69E-46 |
| MS.gene052207 | MS.gene55321 | 0.830889 | 2.28E-55 | -1.69E-46 |
| MS.gene052253 | MS.gene55321 | 0.837408 | 5.29E-57 | -1.69E-46 |
| MS.gene052326 | MS.gene55321 | 0.801909 | 7.21E-49 | -1.69E-46 |
| MS.gene052340 | MS.gene55321 | 0.806131 | 9.55E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene55321 | 0.82354 | 1.31E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene55321 | 0.853448 | 2.37E-61 | -1.69E-46 |
| MS.gene052982 | MS.gene55321 | 0.819229 | 1.30E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene55321 | 0.820926 | 5.30E-53 | -1.69E-46 |
| MS.gene053836 | MS.gene55321 | 0.832644 | 8.41E-56 | -1.69E-46 |
| MS.gene054010 | MS.gene55321 | 0.860674 | 1.75E-63 | -1.69E-46 |
| MS.gene054011 | MS.gene55321 | 0.845329 | 4.35E-59 | -1.69E-46 |
| MS.gene054012 | MS.gene55321 | 0.854437 | 1.23E-61 | -1.69E-46 |
| MS.gene054013 | MS.gene55321 | 0.855323 | 6.81E-62 | -1.69E-46 |
| MS.gene054183 | MS.gene55321 | 0.832373 | 9.81E-56 | -1.69E-46 |
| MS.gene054473 | MS.gene55321 | 0.822567 | 2.21E-53 | -1.69E-46 |
| MS.gene054556 | MS.gene55321 | 0.806426 | 8.27E-50 | -1.69E-46 |
| MS.gene05455 | MS.gene55321 | 0.826768 | 2.26E-54 | -1.69E-46 |
| MS.gene054719 | MS.gene55321 | 0.827693 | 1.36E-54 | -1.69E-46 |
| MS.gene054920 | MS.gene55321 | 0.815099 | 1.10E-51 | -1.69E-46 |
| MS.gene055116 | MS.gene55321 | 0.814168 | 1.77E-51 | -1.69E-46 |
| MS.gene055277 | MS.gene55321 | 0.838886 | 2.20E-57 | -1.69E-46 |
| MS.gene055390 | MS.gene55321 | 0.84337 | 1.46E-58 | -1.69E-46 |
| MS.gene055412 | MS.gene55321 | 0.816975 | 4.19E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene55321 | 0.823196 | 1.58E-53 | -1.69E-46 |
| MS.gene055428 | MS.gene55321 | 0.831069 | 2.06E-55 | -1.69E-46 |
| MS.gene05553 | MS.gene55321 | 0.829004 | 6.56E-55 | -1.69E-46 |
| MS.gene055604 | MS.gene55321 | 0.86594 | 4.10E-65 | -1.69E-46 |
| MS.gene055666 | MS.gene55321 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene056191 | MS.gene55321 | 0.840585 | 7.96E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene55321 | 0.854596 | 1.11E-61 | -1.69E-46 |
| MS.gene056410 | MS.gene55321 | 0.835006 | 2.16E-56 | -1.69E-46 |
| MS.gene056452 | MS.gene55321 | 0.81095 | 8.93E-51 | -1.69E-46 |
| MS.gene056659 | MS.gene55321 | 0.80359 | 3.24E-49 | -1.69E-46 |
| MS.gene056723 | MS.gene55321 | 0.819152 | 1.35E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene55321 | 0.830545 | 2.77E-55 | -1.69E-46 |
| MS.gene056902 | MS.gene55321 | 0.85836 | 8.69E-63 | -1.69E-46 |
| MS.gene056931 | MS.gene55321 | 0.831857 | 1.32E-55 | -1.69E-46 |
| MS.gene056933 | MS.gene55321 | 0.828941 | 6.79E-55 | -1.69E-46 |
| MS.gene056935 | MS.gene55321 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene05702 | MS.gene55321 | 0.839709 | 1.35E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene55321 | 0.825073 | 5.72E-54 | -1.69E-46 |
| MS.gene057245 | MS.gene55321 | 0.805433 | 1.34E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene55321 | 0.859215 | 4.82E-63 | -1.69E-46 |
| MS.gene057476 | MS.gene55321 | 0.818385 | 2.02E-52 | -1.69E-46 |
| MS.gene057749 | MS.gene55321 | 0.833579 | 4.92E-56 | -1.69E-46 |
| MS.gene057823 | MS.gene55321 | 0.836119 | 1.13E-56 | -1.69E-46 |
| MS.gene058002 | MS.gene55321 | 0.833749 | 4.46E-56 | -1.69E-46 |
| MS.gene05811 | MS.gene55321 | 0.864022 | 1.64E-64 | -1.69E-46 |
| MS.gene058142 | MS.gene55321 | 0.810664 | 1.03E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene55321 | 0.809783 | 1.60E-50 | -1.69E-46 |
| MS.gene058293 | MS.gene55321 | 0.800468 | 1.42E-48 | -1.69E-46 |
| MS.gene05842 | MS.gene55321 | 0.807828 | 4.18E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene55321 | 0.840568 | 8.04E-58 | -1.69E-46 |
| MS.gene058700 | MS.gene55321 | 0.830025 | 3.70E-55 | -1.69E-46 |
| MS.gene05907 | MS.gene55321 | 0.870026 | 1.99E-66 | -1.69E-46 |
| MS.gene059141 | MS.gene55321 | 0.821748 | 3.42E-53 | -1.69E-46 |
| MS.gene059294 | MS.gene55321 | 0.824022 | 1.01E-53 | -1.69E-46 |
| MS.gene059420 | MS.gene55321 | 0.852154 | 5.56E-61 | -1.69E-46 |
| MS.gene059597 | MS.gene55321 | 0.827395 | 1.60E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene55321 | 0.833972 | 3.92E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene55321 | 0.828947 | 6.77E-55 | -1.69E-46 |
| MS.gene059692 | MS.gene55321 | 0.823118 | 1.65E-53 | -1.69E-46 |
| MS.gene059695 | MS.gene55321 | 0.828358 | 9.40E-55 | -1.69E-46 |
| MS.gene05984 | MS.gene55321 | 0.825135 | 5.53E-54 | -1.69E-46 |
| MS.gene060403 | MS.gene55321 | 0.804885 | 1.74E-49 | -1.69E-46 |
| MS.gene060559 | MS.gene55321 | 0.840997 | 6.21E-58 | -1.69E-46 |
| MS.gene060837 | MS.gene55321 | 0.80861 | 2.85E-50 | -1.69E-46 |
| MS.gene060986 | MS.gene55321 | 0.80822 | 3.45E-50 | -1.69E-46 |
| MS.gene061049 | MS.gene55321 | 0.83015 | 3.45E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55321.t1 | MTR_5g043020 | 97.835 | 231 | 5 | 0 | 1 | 231 | 1 | 231 | 7.32e-169 | 464 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55321.t1 | AT1G69390 | 60.345 | 232 | 78 | 6 | 4 | 228 | 5 | 229 | 4.12e-88 | 260 |
Find 41 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCCACCACTTGATATTC+TGG | 0.244756 | 5.2:+32780925 | None:intergenic |
| TTTCTTTGAGCGTTTAAATT+TGG | 0.250395 | 5.2:-32781208 | MS.gene55321:CDS |
| CTATCAACAATGGCGATTTC+CGG | 0.270969 | 5.2:-32783008 | None:intergenic |
| GGAGAAAGTTCTCAGCTTCT+TGG | 0.278127 | 5.2:+32781250 | None:intergenic |
| AAGGACACTGGAGATATTTC+AGG | 0.278153 | 5.2:-32780874 | MS.gene55321:CDS |
| AATGGAGGGTCCTGCATATC+TGG | 0.296453 | 5.2:-32781384 | MS.gene55321:CDS |
| TATCAAGTGGTGGATGAAAC+TGG | 0.298342 | 5.2:-32780919 | MS.gene55321:CDS |
| AATAACAAATATTGAGTATA+AGG | 0.315113 | 5.2:-32780893 | MS.gene55321:CDS |
| GTTGTCATGGTGGAACGTTT+TGG | 0.358148 | 5.2:+32781354 | None:intergenic |
| GTCTCTGCAGATACAGATAT+TGG | 0.363379 | 5.2:-32780988 | MS.gene55321:CDS |
| GGGAACTGTAACAGAGTAAA+TGG | 0.372870 | 5.2:+32780963 | None:intergenic |
| TAGATTTGATTTCTATGTTC+CGG | 0.386558 | 5.2:-32780839 | MS.gene55321:CDS |
| CAAAATCAAGACATTTCATC+CGG | 0.406142 | 5.2:+32780820 | None:intergenic |
| AATCATCTTCAGACGTTGCT+TGG | 0.438839 | 5.2:+32781128 | None:intergenic |
| TTCTGGTTTAACCCGCCGTA+CGG | 0.458433 | 5.2:+32780942 | None:intergenic |
| AGAGGATGTGAGCGATGAAG+TGG | 0.464135 | 5.2:+32782960 | None:intergenic |
| TTCATTGTTTCTTAAATGGA+GGG | 0.495949 | 5.2:-32781398 | MS.gene55321:CDS |
| AAAGATGTGGTTGGAAGGAG+AGG | 0.498974 | 5.2:+32782942 | None:intergenic |
| TGGGGTGAATCCAGATATGC+AGG | 0.499751 | 5.2:+32781374 | None:intergenic |
| TCTGGTTTAACCCGCCGTAC+GGG | 0.504423 | 5.2:+32780943 | None:intergenic |
| CTAAGAAAAGCTCCGTTGCT+AGG | 0.515407 | 5.2:-32781155 | MS.gene55321:CDS |
| GAAGAAAAGATGTGGTTGGA+AGG | 0.516372 | 5.2:+32782937 | None:intergenic |
| TTTCATTGTTTCTTAAATGG+AGG | 0.517610 | 5.2:-32781399 | MS.gene55321:CDS |
| GGAGGAAGAAAAGATGTGGT+TGG | 0.525930 | 5.2:+32782933 | None:intergenic |
| TTGAGCGTTTAAATTTGGCT+TGG | 0.527703 | 5.2:-32781203 | MS.gene55321:CDS |
| TGCAGTGACTCTAATGTCGC+CGG | 0.551915 | 5.2:+32782989 | None:intergenic |
| ATTGCTTCGTACAGTTGTCA+TGG | 0.565206 | 5.2:+32781341 | None:intergenic |
| ATCAAGTGGTGGATGAAACT+GGG | 0.583073 | 5.2:-32780918 | MS.gene55321:CDS |
| TGTTACAGTTCCCGTACGGC+GGG | 0.585141 | 5.2:-32780953 | MS.gene55321:CDS |
| AAAAGGAACGATACCTTTGG+AGG | 0.585564 | 5.2:+32782915 | None:intergenic |
| AATATTGAGTATAAGGACAC+TGG | 0.585790 | 5.2:-32780886 | MS.gene55321:CDS |
| CTGTTACAGTTCCCGTACGG+CGG | 0.587827 | 5.2:-32780954 | MS.gene55321:CDS |
| AACTCATATTAACAGCATCA+AGG | 0.588920 | 5.2:+32781229 | None:intergenic |
| CTTTGGAGGAAGAAAAGATG+TGG | 0.629115 | 5.2:+32782929 | None:intergenic |
| ACTCTGTTACAGTTCCCGTA+CGG | 0.633138 | 5.2:-32780957 | MS.gene55321:CDS |
| TTGCTTGGCAATCCTAGCAA+CGG | 0.640673 | 5.2:+32781143 | None:intergenic |
| TAAACCAGAATATCAAGTGG+TGG | 0.645335 | 5.2:-32780929 | MS.gene55321:CDS |
| GCTTCGTACAGTTGTCATGG+TGG | 0.658571 | 5.2:+32781344 | None:intergenic |
| GGTTAAACCAGAATATCAAG+TGG | 0.711520 | 5.2:-32780932 | MS.gene55321:CDS |
| ACTGTACGAAGCAATATGCG+TGG | 0.726540 | 5.2:-32781333 | MS.gene55321:CDS |
| TCGATGTGAAGTAAGTGATG+AGG | 0.741244 | 5.2:-32781094 | MS.gene55321:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.2:32781981-32782000 | MS.gene55321:intron | 100.0% |
| !! | AATAACAAATATTGAGTATA+AGG | - | chr5.2:32782931-32782950 | MS.gene55321:CDS | 15.0% |
| !! | ATAAATATAAGCTTAAAACA+TGG | + | chr5.2:32781402-32781421 | None:intergenic | 15.0% |
| !! | ATTTATGTATGTATTTAGTT+TGG | - | chr5.2:32781146-32781165 | MS.gene55321:CDS | 15.0% |
| !!! | AAACATGTCATATTTTATTT+TGG | - | chr5.2:32781960-32781979 | MS.gene55321:intron | 15.0% |
| !!! | AACATGTCATATTTTATTTT+GGG | - | chr5.2:32781961-32781980 | MS.gene55321:intron | 15.0% |
| !!! | ATGTTTTAAGCTTATATTTA+TGG | - | chr5.2:32781401-32781420 | MS.gene55321:CDS | 15.0% |
| !!! | TGTAGTTTTTGTTAAAATTT+TGG | - | chr5.2:32781474-32781493 | MS.gene55321:intron | 15.0% |
| !!! | TTTTCTTTTTTCTCTAATTA+GGG | - | chr5.2:32780928-32780947 | MS.gene55321:CDS | 15.0% |
| !! | ATGACATAATTTATATGTGT+TGG | - | chr5.2:32781252-32781271 | MS.gene55321:CDS | 20.0% |
| !! | CTAATTAGAGAAAAAAGAAA+AGG | + | chr5.2:32780929-32780948 | None:intergenic | 20.0% |
| !! | GTTTGAGTAATAAAAATGAA+GGG | - | chr5.2:32781613-32781632 | MS.gene55321:intron | 20.0% |
| !! | TGTTTGAGTAATAAAAATGA+AGG | - | chr5.2:32781612-32781631 | MS.gene55321:intron | 20.0% |
| !! | TTTGAGTAATAAAAATGAAG+GGG | - | chr5.2:32781614-32781633 | MS.gene55321:intron | 20.0% |
| !!! | AACATGTGATATAATTTTCA+AGG | + | chr5.2:32781596-32781615 | None:intergenic | 20.0% |
| !!! | AACATTTTGTAAATCTTGTA+AGG | + | chr5.2:32782361-32782380 | None:intergenic | 20.0% |
| !!! | ACATGTCATATTTTATTTTG+GGG | - | chr5.2:32781962-32781981 | MS.gene55321:intron | 20.0% |
| !!! | ATATTTAATTTAGATGCTTG+TGG | - | chr5.2:32782283-32782302 | MS.gene55321:intron | 20.0% |
| !!! | CTTTGTTATAGATGTATTTT+CGG | - | chr5.2:32781559-32781578 | MS.gene55321:intron | 20.0% |
| !!! | CTTTTCTTTTTTCTCTAATT+AGG | - | chr5.2:32780927-32780946 | MS.gene55321:CDS | 20.0% |
| !!! | GATTTTCATTGTTTCTTAAA+TGG | - | chr5.2:32782422-32782441 | MS.gene55321:intron | 20.0% |
| !!! | TATTTTCTCTTGCAAATTAA+CGG | - | chr5.2:32780980-32780999 | MS.gene55321:CDS | 20.0% |
| !!! | TCATTTTCTCACATTATTAT+CGG | + | chr5.2:32781236-32781255 | None:intergenic | 20.0% |
| !!! | TGTTACTGTTGTTTTAATAA+TGG | - | chr5.2:32781067-32781086 | MS.gene55321:CDS | 20.0% |
| !!! | TTGAAAGTGTCAATTATTTT+AGG | + | chr5.2:32781793-32781812 | None:intergenic | 20.0% |
| !!! | TTTTAACAAAAACTACACTT+TGG | + | chr5.2:32781471-32781490 | None:intergenic | 20.0% |
| !!! | TTTTGTTAAAATTTTGGTAG+CGG | - | chr5.2:32781480-32781499 | MS.gene55321:intron | 20.0% |
| ! | AACACATATTTCCAATCAAA+TGG | + | chr5.2:32782085-32782104 | None:intergenic | 25.0% |
| ! | AATCCAAACTTGTACTAAAA+CGG | - | chr5.2:32781529-32781548 | MS.gene55321:intron | 25.0% |
| ! | ATCAACATAGAATGGAAAAA+TGG | + | chr5.2:32782162-32782181 | None:intergenic | 25.0% |
| ! | CAGAACAATTAAGATTAACT+AGG | + | chr5.2:32782391-32782410 | None:intergenic | 25.0% |
| ! | TCACTATGTCCATTAATAAT+CGG | - | chr5.2:32781717-32781736 | MS.gene55321:intron | 25.0% |
| ! | TGAGTTTGAAGAAATTATTG+CGG | - | chr5.2:32781424-32781443 | MS.gene55321:intron | 25.0% |
| ! | TGTTATTGTCTAAACTCTAT+AGG | - | chr5.2:32781668-32781687 | MS.gene55321:intron | 25.0% |
| ! | TTTCTTTGAGCGTTTAAATT+TGG | - | chr5.2:32782616-32782635 | MS.gene55321:intron | 25.0% |
| !! | CCTTTTTGATATTCAGTATA+GGG | - | chr5.2:32782216-32782235 | MS.gene55321:intron | 25.0% |
| !! | CTTTTTGATATTCAGTATAG+GGG | - | chr5.2:32782217-32782236 | MS.gene55321:intron | 25.0% |
| !! | GACAAATTTCTTTTGCAAAT+AGG | + | chr5.2:32781743-32781762 | None:intergenic | 25.0% |
| !! | GACTACAGTAATTGAAATTT+TGG | - | chr5.2:32781357-32781376 | MS.gene55321:CDS | 25.0% |
| !! | TAGATTTGATTTCTATGTTC+CGG | - | chr5.2:32782985-32783004 | MS.gene55321:CDS | 25.0% |
| !! | TATTTTCTCCAATTTCTCTA+AGG | + | chr5.2:32782131-32782150 | None:intergenic | 25.0% |
| !! | TTCATTGTTTCTTAAATGGA+GGG | - | chr5.2:32782426-32782445 | MS.gene55321:intron | 25.0% |
| !! | TTTCATTGTTTCTTAAATGG+AGG | - | chr5.2:32782425-32782444 | MS.gene55321:intron | 25.0% |
| !! | TTTTTCCATTCTATGTTGAT+CGG | - | chr5.2:32782162-32782181 | MS.gene55321:intron | 25.0% |
| !!! | AATTTCAAGTTCAGAAATGT+TGG | - | chr5.2:32781122-32781141 | MS.gene55321:CDS | 25.0% |
| !!! | ATGTCATATTTTATTTTGGG+GGG | - | chr5.2:32781964-32781983 | MS.gene55321:intron | 25.0% |
| !!! | CATGTCATATTTTATTTTGG+GGG | - | chr5.2:32781963-32781982 | MS.gene55321:intron | 25.0% |
| !!! | CTTTGAAACAAACTTATTCT+GGG | + | chr5.2:32781765-32781784 | None:intergenic | 25.0% |
| !!! | TCTTTGAAACAAACTTATTC+TGG | + | chr5.2:32781766-32781785 | None:intergenic | 25.0% |
| !!! | TGTATGTATTTAGTTTGGTT+TGG | - | chr5.2:32781151-32781170 | MS.gene55321:CDS | 25.0% |
| AACTCATATTAACAGCATCA+AGG | + | chr5.2:32782598-32782617 | None:intergenic | 30.0% | |
| AATAAAAATGAAGGGGAATG+AGG | - | chr5.2:32781621-32781640 | MS.gene55321:intron | 30.0% | |
| AATATTGAGTATAAGGACAC+TGG | - | chr5.2:32782938-32782957 | MS.gene55321:CDS | 30.0% | |
| AATTAAGCACAAATACTCCT+TGG | + | chr5.2:32781323-32781342 | None:intergenic | 30.0% | |
| ACATAGTGAGTAATGAATTG+TGG | + | chr5.2:32781706-32781725 | None:intergenic | 30.0% | |
| ATACCACTCTGAATTCAATA+AGG | - | chr5.2:32781870-32781889 | MS.gene55321:intron | 30.0% | |
| ATGAAAAATTAGAACCTCCA+AGG | + | chr5.2:32782541-32782560 | None:intergenic | 30.0% | |
| CCCTATACTGAATATCAAAA+AGG | + | chr5.2:32782219-32782238 | None:intergenic | 30.0% | |
| GAGTTTGAAGAAATTATTGC+GGG | - | chr5.2:32781425-32781444 | MS.gene55321:intron | 30.0% | |
| TATCCTTATTGAATTCAGAG+TGG | + | chr5.2:32781876-32781895 | None:intergenic | 30.0% | |
| TCCAATCAAATGGAATAAAG+TGG | + | chr5.2:32782075-32782094 | None:intergenic | 30.0% | |
| TCCACTTTATTCCATTTGAT+TGG | - | chr5.2:32782071-32782090 | MS.gene55321:intron | 30.0% | |
| TCTTAATTGTTCTGTCTAAC+AGG | - | chr5.2:32782397-32782416 | MS.gene55321:intron | 30.0% | |
| ! | GCCTTTTTGATATTCAGTAT+AGG | - | chr5.2:32782215-32782234 | MS.gene55321:intron | 30.0% |
| !!! | ACTGATACTTTGTTTTAGAG+GGG | + | chr5.2:32782033-32782052 | None:intergenic | 30.0% |
| !!! | CACTGATACTTTGTTTTAGA+GGG | + | chr5.2:32782034-32782053 | None:intergenic | 30.0% |
| !!! | TGTCATATTTTATTTTGGGG+GGG | - | chr5.2:32781965-32781984 | MS.gene55321:intron | 30.0% |
| AAGAAAAGGAACGATACCTT+TGG | + | chr5.2:32780915-32780934 | None:intergenic | 35.0% | |
| GCAAATAGGCCGATTATTAA+TGG | + | chr5.2:32781729-32781748 | None:intergenic | 35.0% | |
| GGTTAAACCAGAATATCAAG+TGG | - | chr5.2:32782892-32782911 | MS.gene55321:intron | 35.0% | |
| TAAACCAGAATATCAAGTGG+TGG | - | chr5.2:32782895-32782914 | MS.gene55321:intron | 35.0% | |
| TGTTGATCGGTTGCTAAAAT+AGG | - | chr5.2:32782175-32782194 | MS.gene55321:intron | 35.0% | |
| TTAATTTAGATGCTTGTGGC+TGG | - | chr5.2:32782287-32782306 | MS.gene55321:intron | 35.0% | |
| TTGAGCGTTTAAATTTGGCT+TGG | - | chr5.2:32782621-32782640 | MS.gene55321:intron | 35.0% | |
| ! | TTTCTCCAATTTCTCTAAGG+CGG | + | chr5.2:32782128-32782147 | None:intergenic | 35.0% |
| ! | TTTTCTTAGACACTGCTGAT+GGG | + | chr5.2:32782658-32782677 | None:intergenic | 35.0% |
| !! | CCTCTAAAACAAAGTATCAG+TGG | - | chr5.2:32782032-32782051 | MS.gene55321:intron | 35.0% |
| !! | TATTATCGGTGTTGACATTC+TGG | + | chr5.2:32781222-32781241 | None:intergenic | 35.0% |
| !!! | CCACTGATACTTTGTTTTAG+AGG | + | chr5.2:32782035-32782054 | None:intergenic | 35.0% |
| !!! | GTCATATTTTATTTTGGGGG+GGG | - | chr5.2:32781966-32781985 | MS.gene55321:intron | 35.0% |
| !!! | TCATATTTTATTTTGGGGGG+GGG | - | chr5.2:32781967-32781986 | MS.gene55321:intron | 35.0% |
| AAAAGGAACGATACCTTTGG+AGG | + | chr5.2:32780912-32780931 | None:intergenic | 40.0% | |
| AAGGACACTGGAGATATTTC+AGG | - | chr5.2:32782950-32782969 | MS.gene55321:CDS | 40.0% | |
| AATCATCTTCAGACGTTGCT+TGG | + | chr5.2:32782699-32782718 | None:intergenic | 40.0% | |
| AGCAACCGATCAACATAGAA+TGG | + | chr5.2:32782170-32782189 | None:intergenic | 40.0% | |
| ATTGCTTCGTACAGTTGTCA+TGG | + | chr5.2:32782486-32782505 | None:intergenic | 40.0% | |
| CCAAACTTGTACTAAAACGG+TGG | - | chr5.2:32781532-32781551 | MS.gene55321:intron | 40.0% | |
| GAAGAAAAGATGTGGTTGGA+AGG | + | chr5.2:32780890-32780909 | None:intergenic | 40.0% | |
| GCACAAATACTCCTTGGATT+AGG | + | chr5.2:32781317-32781336 | None:intergenic | 40.0% | |
| GGGAACTGTAACAGAGTAAA+TGG | + | chr5.2:32782864-32782883 | None:intergenic | 40.0% | |
| GTCTCTGCAGATACAGATAT+TGG | - | chr5.2:32782836-32782855 | MS.gene55321:intron | 40.0% | |
| GTGTCAGACTCAATACGTAT+CGG | - | chr5.2:32781280-32781299 | MS.gene55321:CDS | 40.0% | |
| TCATCCACCACTTGATATTC+TGG | + | chr5.2:32782902-32782921 | None:intergenic | 40.0% | |
| TCGATGTGAAGTAAGTGATG+AGG | - | chr5.2:32782730-32782749 | MS.gene55321:intron | 40.0% | |
| ! | CACATCTTTTCTTCCTCCAA+AGG | - | chr5.2:32780896-32780915 | MS.gene55321:CDS | 40.0% |
| ! | CTTTGGAGGAAGAAAAGATG+TGG | + | chr5.2:32780898-32780917 | None:intergenic | 40.0% |
| ! | CTTTTCTTAGACACTGCTGA+TGG | + | chr5.2:32782659-32782678 | None:intergenic | 40.0% |
| !! | ATCAAGTGGTGGATGAAACT+GGG | - | chr5.2:32782906-32782925 | MS.gene55321:intron | 40.0% |
| !! | CCACCGTTTTAGTACAAGTT+TGG | + | chr5.2:32781535-32781554 | None:intergenic | 40.0% |
| !! | TATCAAGTGGTGGATGAAAC+TGG | - | chr5.2:32782905-32782924 | MS.gene55321:intron | 40.0% |
| !! | TTCTCCAATTTCTCTAAGGC+GGG | + | chr5.2:32782127-32782146 | None:intergenic | 40.0% |
| !! | TTGTCATGGTGGAACGTTTT+GGG | + | chr5.2:32782472-32782491 | None:intergenic | 40.0% |
| !!! | ATATTTTATTTTGGGGGGGG+GGG | - | chr5.2:32781969-32781988 | MS.gene55321:intron | 40.0% |
| !!! | CATATTTTATTTTGGGGGGG+GGG | - | chr5.2:32781968-32781987 | MS.gene55321:intron | 40.0% |
| AAAGATGTGGTTGGAAGGAG+AGG | + | chr5.2:32780885-32780904 | None:intergenic | 45.0% | |
| ACTCAATACGTATCGGACAC+CGG | - | chr5.2:32781287-32781306 | MS.gene55321:CDS | 45.0% | |
| ACTCTGTTACAGTTCCCGTA+CGG | - | chr5.2:32782867-32782886 | MS.gene55321:intron | 45.0% | |
| ACTGTACGAAGCAATATGCG+TGG | - | chr5.2:32782491-32782510 | MS.gene55321:intron | 45.0% | |
| CTAAGAAAAGCTCCGTTGCT+AGG | - | chr5.2:32782669-32782688 | MS.gene55321:intron | 45.0% | |
| GGAGAAAGTTCTCAGCTTCT+TGG | + | chr5.2:32782577-32782596 | None:intergenic | 45.0% | |
| GGAGGAAGAAAAGATGTGGT+TGG | + | chr5.2:32780894-32780913 | None:intergenic | 45.0% | |
| TTGCTTGGCAATCCTAGCAA+CGG | + | chr5.2:32782684-32782703 | None:intergenic | 45.0% | |
| ! | GCGTGCTCTATCAGATTTTG+TGG | - | chr5.2:32782781-32782800 | MS.gene55321:intron | 45.0% |
| !! | GTTGTCATGGTGGAACGTTT+TGG | + | chr5.2:32782473-32782492 | None:intergenic | 45.0% |
| !! | TCTCCAATTTCTCTAAGGCG+GGG | + | chr5.2:32782126-32782145 | None:intergenic | 45.0% |
| !! | TGTCATGGTGGAACGTTTTG+GGG | + | chr5.2:32782471-32782490 | None:intergenic | 45.0% |
| !!! | AAGCCTGTTTTTGCAGTCCT+TGG | - | chr5.2:32782521-32782540 | MS.gene55321:intron | 45.0% |
| !!! | TATTTTATTTTGGGGGGGGG+GGG | - | chr5.2:32781970-32781989 | MS.gene55321:intron | 45.0% |
| AATGGAGGGTCCTGCATATC+TGG | - | chr5.2:32782440-32782459 | MS.gene55321:intron | 50.0% | |
| AGAGGATGTGAGCGATGAAG+TGG | + | chr5.2:32780867-32780886 | None:intergenic | 50.0% | |
| CCTCCAAGGACTGCAAAAAC+AGG | + | chr5.2:32782527-32782546 | None:intergenic | 50.0% | |
| GCTTCGTACAGTTGTCATGG+TGG | + | chr5.2:32782483-32782502 | None:intergenic | 50.0% | |
| GTTCCCCGCCTTAGAGAAAT+TGG | - | chr5.2:32782120-32782139 | MS.gene55321:intron | 50.0% | |
| TGCAGTGACTCTAATGTCGC+CGG | + | chr5.2:32780838-32780857 | None:intergenic | 50.0% | |
| TGGGGTGAATCCAGATATGC+AGG | + | chr5.2:32782453-32782472 | None:intergenic | 50.0% | |
| ! | ACTCCTTGGATTAGGCTGTC+CGG | + | chr5.2:32781309-32781328 | None:intergenic | 50.0% |
| !! | GGTGTTGACATTCTGGTGTC+TGG | + | chr5.2:32781215-32781234 | None:intergenic | 50.0% |
| !! | TTCTGGTTTAACCCGCCGTA+CGG | + | chr5.2:32782885-32782904 | None:intergenic | 50.0% |
| !!! | ATTTTATTTTGGGGGGGGGG+GGG | - | chr5.2:32781971-32781990 | MS.gene55321:intron | 50.0% |
| !!! | CCTGTTTTTGCAGTCCTTGG+AGG | - | chr5.2:32782524-32782543 | MS.gene55321:intron | 50.0% |
| ACACCGGACAGCCTAATCCA+AGG | - | chr5.2:32781303-32781322 | MS.gene55321:CDS | 55.0% | |
| CTGTTACAGTTCCCGTACGG+CGG | - | chr5.2:32782870-32782889 | MS.gene55321:intron | 55.0% | |
| TGTTACAGTTCCCGTACGGC+GGG | - | chr5.2:32782871-32782890 | MS.gene55321:intron | 55.0% | |
| ! | TCTGGTTTAACCCGCCGTAC+GGG | + | chr5.2:32782884-32782903 | None:intergenic | 55.0% |
| !!! | TTTTATTTTGGGGGGGGGGG+GGG | - | chr5.2:32781972-32781991 | MS.gene55321:intron | 55.0% |
| !!! | TTTATTTTGGGGGGGGGGGG+GGG | - | chr5.2:32781973-32781992 | MS.gene55321:intron | 60.0% |
| !!! | TTATTTTGGGGGGGGGGGGG+GGG | - | chr5.2:32781974-32781993 | MS.gene55321:intron | 65.0% |
| !! | TATTTTGGGGGGGGGGGGGG+GGG | - | chr5.2:32781975-32781994 | MS.gene55321:intron | 70.0% |
| !! | ATTTTGGGGGGGGGGGGGGG+GGG | - | chr5.2:32781976-32781995 | MS.gene55321:intron | 75.0% |
| !!! | TTTTGGGGGGGGGGGGGGGG+GGG | - | chr5.2:32781977-32781996 | MS.gene55321:intron | 80.0% |
| ! | TTTGGGGGGGGGGGGGGGGG+GGG | - | chr5.2:32781978-32781997 | MS.gene55321:intron | 85.0% |
| ! | TTGGGGGGGGGGGGGGGGGG+GGG | - | chr5.2:32781979-32781998 | MS.gene55321:intron | 90.0% |
| ! | TGGGGGGGGGGGGGGGGGGG+GGG | - | chr5.2:32781980-32781999 | MS.gene55321:intron | 95.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 32780825 | 32783021 | 32780825 | ID=MS.gene55321 |
| chr5.2 | mRNA | 32780825 | 32783021 | 32780825 | ID=MS.gene55321.t1;Parent=MS.gene55321 |
| chr5.2 | exon | 32782929 | 32783021 | 32782929 | ID=MS.gene55321.t1.exon1;Parent=MS.gene55321.t1 |
| chr5.2 | CDS | 32782929 | 32783021 | 32782929 | ID=cds.MS.gene55321.t1;Parent=MS.gene55321.t1 |
| chr5.2 | exon | 32780825 | 32781427 | 32780825 | ID=MS.gene55321.t1.exon2;Parent=MS.gene55321.t1 |
| chr5.2 | CDS | 32780825 | 32781427 | 32780825 | ID=cds.MS.gene55321.t1;Parent=MS.gene55321.t1 |
| Gene Sequence |
| Protein sequence |
