Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57232.t1 | XP_003589013.1 | 98 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 7.50E-134 | 486.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57232.t1 | Q9FN15 | 42.4 | 191 | 109 | 1 | 20 | 210 | 51 | 240 | 1.1e-32 | 141.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57232.t1 | G7IB80 | 98.0 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 5.4e-134 | 486.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene57232 | 0.819335 | 1.23E-52 | -1.69E-46 |
| MS.gene049356 | MS.gene57232 | 0.809062 | 2.28E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene57232 | 0.809987 | 1.44E-50 | -1.69E-46 |
| MS.gene050060 | MS.gene57232 | 0.839899 | 1.20E-57 | -1.69E-46 |
| MS.gene050301 | MS.gene57232 | 0.817001 | 4.13E-52 | -1.69E-46 |
| MS.gene050404 | MS.gene57232 | 0.815906 | 7.27E-52 | -1.69E-46 |
| MS.gene050406 | MS.gene57232 | 0.815508 | 8.92E-52 | -1.69E-46 |
| MS.gene050529 | MS.gene57232 | 0.800166 | 1.64E-48 | -1.69E-46 |
| MS.gene050670 | MS.gene57232 | 0.848644 | 5.38E-60 | -1.69E-46 |
| MS.gene050812 | MS.gene57232 | 0.830796 | 2.40E-55 | -1.69E-46 |
| MS.gene05105 | MS.gene57232 | 0.849216 | 3.73E-60 | -1.69E-46 |
| MS.gene051228 | MS.gene57232 | 0.803799 | 2.93E-49 | -1.69E-46 |
| MS.gene051471 | MS.gene57232 | 0.815212 | 1.04E-51 | -1.69E-46 |
| MS.gene051582 | MS.gene57232 | 0.807145 | 5.83E-50 | -1.69E-46 |
| MS.gene051617 | MS.gene57232 | 0.836532 | 8.85E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene57232 | 0.802184 | 6.33E-49 | -1.69E-46 |
| MS.gene052188 | MS.gene57232 | 0.884309 | 2.14E-71 | -1.69E-46 |
| MS.gene052290 | MS.gene57232 | 0.818805 | 1.62E-52 | -1.69E-46 |
| MS.gene052310 | MS.gene57232 | 0.865529 | 5.53E-65 | -1.69E-46 |
| MS.gene052340 | MS.gene57232 | 0.862291 | 5.62E-64 | -1.69E-46 |
| MS.gene052421 | MS.gene57232 | 0.836838 | 7.40E-57 | -1.69E-46 |
| MS.gene052469 | MS.gene57232 | 0.823485 | 1.35E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene57232 | 0.800611 | 1.33E-48 | -1.69E-46 |
| MS.gene052870 | MS.gene57232 | 0.808276 | 3.35E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene57232 | 0.821808 | 3.32E-53 | -1.69E-46 |
| MS.gene053209 | MS.gene57232 | 0.840226 | 9.88E-58 | -1.69E-46 |
| MS.gene053557 | MS.gene57232 | 0.815263 | 1.01E-51 | -1.69E-46 |
| MS.gene053912 | MS.gene57232 | 0.818542 | 1.86E-52 | -1.69E-46 |
| MS.gene053928 | MS.gene57232 | 0.813947 | 1.98E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene57232 | 0.834772 | 2.47E-56 | -1.69E-46 |
| MS.gene054349 | MS.gene57232 | 0.814553 | 1.45E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene57232 | 0.821425 | 4.07E-53 | -1.69E-46 |
| MS.gene055116 | MS.gene57232 | 0.820435 | 6.87E-53 | -1.69E-46 |
| MS.gene055412 | MS.gene57232 | 0.824329 | 8.56E-54 | -1.69E-46 |
| MS.gene055539 | MS.gene57232 | 0.816766 | 4.67E-52 | -1.69E-46 |
| MS.gene05553 | MS.gene57232 | 0.827153 | 1.83E-54 | -1.69E-46 |
| MS.gene055605 | MS.gene57232 | 0.817451 | 3.27E-52 | -1.69E-46 |
| MS.gene05592 | MS.gene57232 | 0.818339 | 2.06E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene57232 | 0.8133 | 2.74E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene57232 | 0.84149 | 4.61E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene57232 | 0.843003 | 1.83E-58 | -1.69E-46 |
| MS.gene056664 | MS.gene57232 | 0.820093 | 8.23E-53 | -1.69E-46 |
| MS.gene056719 | MS.gene57232 | 0.88865 | 4.89E-73 | -1.69E-46 |
| MS.gene056897 | MS.gene57232 | 0.832032 | 1.19E-55 | -1.69E-46 |
| MS.gene05702 | MS.gene57232 | 0.80445 | 2.15E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene57232 | 0.834549 | 2.81E-56 | -1.69E-46 |
| MS.gene057450 | MS.gene57232 | 0.806507 | 7.95E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene57232 | 0.810278 | 1.25E-50 | -1.69E-46 |
| MS.gene058082 | MS.gene57232 | 0.838604 | 2.61E-57 | -1.69E-46 |
| MS.gene058142 | MS.gene57232 | 0.800561 | 1.36E-48 | -1.69E-46 |
| MS.gene058233 | MS.gene57232 | 0.815668 | 8.22E-52 | -1.69E-46 |
| MS.gene058276 | MS.gene57232 | 0.830668 | 2.58E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene57232 | 0.822019 | 2.96E-53 | -1.69E-46 |
| MS.gene058365 | MS.gene57232 | 0.839587 | 1.45E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene57232 | 0.800077 | 1.71E-48 | -1.69E-46 |
| MS.gene058700 | MS.gene57232 | 0.822436 | 2.37E-53 | -1.69E-46 |
| MS.gene058748 | MS.gene57232 | 0.803257 | 3.80E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene57232 | 0.812456 | 4.20E-51 | -1.69E-46 |
| MS.gene05907 | MS.gene57232 | 0.801152 | 1.03E-48 | -1.69E-46 |
| MS.gene059366 | MS.gene57232 | 0.802169 | 6.37E-49 | -1.69E-46 |
| MS.gene059597 | MS.gene57232 | 0.810353 | 1.20E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene57232 | 0.828186 | 1.03E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene57232 | 0.854523 | 1.16E-61 | -1.69E-46 |
| MS.gene059688 | MS.gene57232 | 0.860072 | 2.67E-63 | -1.69E-46 |
| MS.gene059692 | MS.gene57232 | 0.872635 | 2.73E-67 | -1.69E-46 |
| MS.gene059695 | MS.gene57232 | 0.87346 | 1.44E-67 | -1.69E-46 |
| MS.gene059894 | MS.gene57232 | 0.848047 | 7.86E-60 | -1.69E-46 |
| MS.gene059960 | MS.gene57232 | 0.805707 | 1.17E-49 | -1.69E-46 |
| MS.gene060407 | MS.gene57232 | 0.838141 | 3.43E-57 | -1.69E-46 |
| MS.gene060496 | MS.gene57232 | 0.804665 | 1.94E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene57232 | 0.803505 | 3.38E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene57232 | 0.840422 | 8.78E-58 | -1.69E-46 |
| MS.gene061154 | MS.gene57232 | 0.811606 | 6.44E-51 | -1.69E-46 |
| MS.gene061159 | MS.gene57232 | 0.827266 | 1.72E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57232.t1 | MTR_1g016360 | 98.016 | 252 | 5 | 0 | 1 | 252 | 1 | 252 | 0.0 | 504 |
| MS.gene57232.t1 | MTR_1g016360 | 96.809 | 188 | 6 | 0 | 1 | 188 | 1 | 188 | 2.45e-132 | 371 |
| MS.gene57232.t1 | MTR_1g016360 | 91.061 | 179 | 16 | 0 | 1 | 179 | 1 | 179 | 3.53e-117 | 333 |
| MS.gene57232.t1 | MTR_5g016100 | 47.205 | 161 | 84 | 1 | 50 | 210 | 66 | 225 | 6.10e-43 | 148 |
| MS.gene57232.t1 | MTR_5g016100 | 47.945 | 146 | 61 | 2 | 92 | 222 | 11 | 156 | 3.59e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57232.t1 | AT5G11840 | 61.328 | 256 | 75 | 5 | 13 | 248 | 9 | 260 | 9.09e-104 | 302 |
| MS.gene57232.t1 | AT5G11840 | 64.674 | 184 | 53 | 2 | 13 | 184 | 9 | 192 | 9.70e-81 | 241 |
| MS.gene57232.t1 | AT5G11840 | 64.481 | 183 | 53 | 2 | 13 | 183 | 9 | 191 | 4.26e-80 | 239 |
| MS.gene57232.t1 | AT5G11840 | 60.479 | 167 | 54 | 2 | 13 | 167 | 9 | 175 | 1.04e-66 | 205 |
| MS.gene57232.t1 | AT5G67370 | 41.969 | 193 | 111 | 1 | 18 | 210 | 49 | 240 | 1.13e-42 | 148 |
Find 55 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACGACTGGTACTCGTTTA+TGG | 0.126473 | 1.4:+6028736 | None:intergenic |
| GTTGATGGAGGGAATAGTTT+TGG | 0.223696 | 1.4:+6028890 | None:intergenic |
| TGTTGGAGTGAATGGGAAAA+AGG | 0.250745 | 1.4:+6028861 | None:intergenic |
| GCTGGTGATGTTGTTGAATA+TGG | 0.283210 | 1.4:-6028686 | MS.gene57232:CDS |
| CTTTGTTCTGTTGCTGTTGT+TGG | 0.293720 | 1.4:+6028823 | None:intergenic |
| TGGCTTGGTTTGGAACTGTT+GGG | 0.311583 | 1.4:-6028610 | MS.gene57232:CDS |
| TGCTGCTTCTAGTGGTGTTT+TGG | 0.320044 | 1.4:-6028555 | MS.gene57232:CDS |
| GGTGAAGACTGCTGAGGTTT+TGG | 0.325730 | 1.4:-6026896 | MS.gene57232:CDS |
| GGGTTACCTGTGGCTTGGTT+TGG | 0.356647 | 1.4:-6028620 | MS.gene57232:CDS |
| AACGACTGGTACTCGTTTAT+GGG | 0.360388 | 1.4:+6028737 | None:intergenic |
| TCTGTTGCTGTTGTTGGTAA+TGG | 0.366769 | 1.4:+6028829 | None:intergenic |
| GTGGCTTGGTTTGGAACTGT+TGG | 0.374589 | 1.4:-6028611 | MS.gene57232:CDS |
| GGTAATGGTGATTGATTTGT+TGG | 0.385707 | 1.4:+6028844 | None:intergenic |
| TTGTTAGGATGTATCTTGGT+TGG | 0.396546 | 1.4:-6028517 | MS.gene57232:CDS |
| GATTGATTTGTTGGAGTGAA+TGG | 0.424418 | 1.4:+6028853 | None:intergenic |
| TGTTAGGATGTATCTTGGTT+GGG | 0.425759 | 1.4:-6028516 | MS.gene57232:CDS |
| GCGGTTGTTAGGATGTATCT+TGG | 0.430246 | 1.4:-6028521 | MS.gene57232:CDS |
| GGCTGCTGTTCTAACGGAAC+AGG | 0.440485 | 1.4:+6028758 | None:intergenic |
| ATCTTGGTTGGGCTTATGTT+GGG | 0.441526 | 1.4:-6028505 | MS.gene57232:CDS |
| ATGTTGTTGAATATGGTTCC+CGG | 0.443228 | 1.4:-6028679 | MS.gene57232:CDS |
| TTGGCACGTGATAGACTCTT+GGG | 0.445944 | 1.4:-6026877 | MS.gene57232:CDS |
| CACCAGCAGCCCATGAAAAC+GGG | 0.453557 | 1.4:+6028702 | None:intergenic |
| AGTCGGTCTGGCAGCATGCT+TGG | 0.454960 | 1.4:-6025812 | MS.gene57232:CDS |
| TTTGGCACGTGATAGACTCT+TGG | 0.457104 | 1.4:-6026878 | MS.gene57232:CDS |
| TATTTAACATCGAGAGAAAC+CGG | 0.458605 | 1.4:-6025751 | MS.gene57232:CDS |
| CTCTGTTTAAGTTCAAGAAA+CGG | 0.462020 | 1.4:-6028791 | MS.gene57232:CDS |
| TCACCAGCAGCCCATGAAAA+CGG | 0.464675 | 1.4:+6028701 | None:intergenic |
| TCCAGGTATTGCTCGAACTC+CGG | 0.467416 | 1.4:+6025732 | None:intergenic |
| TATATTGCAGATGAGGAGAC+AGG | 0.467504 | 1.4:-6027560 | MS.gene57232:intron |
| ATGTACTATTCTTCAAGATC+AGG | 0.468774 | 1.4:+6025655 | None:intergenic |
| TATCTTGGTTGGGCTTATGT+TGG | 0.471423 | 1.4:-6028506 | MS.gene57232:CDS |
| GGCTCACCACAAAATGCATC+TGG | 0.473478 | 1.4:+6025676 | None:intergenic |
| ATTGATTTGTTGGAGTGAAT+GGG | 0.475696 | 1.4:+6028854 | None:intergenic |
| GACAGGGTGGTATGATGGCC+AGG | 0.475845 | 1.4:-6027543 | MS.gene57232:intron |
| TTGTGGGGTTACCTGTGGCT+TGG | 0.484321 | 1.4:-6028625 | MS.gene57232:CDS |
| GAAAATCACTCTAGTCGGTC+TGG | 0.491715 | 1.4:-6025824 | MS.gene57232:CDS |
| TTTCCTTTGCCTTGCTTGTG+GGG | 0.493230 | 1.4:-6028640 | MS.gene57232:CDS |
| ACCGGAGTTCGAGCAATACC+TGG | 0.506149 | 1.4:-6025733 | MS.gene57232:CDS |
| GGCTTGGTTTGGAACTGTTG+GGG | 0.506638 | 1.4:-6028609 | MS.gene57232:CDS |
| GCACAAACAATTCTCTTAGC+AGG | 0.508243 | 1.4:+6028575 | None:intergenic |
| GAGGAGACAGGGTGGTATGA+TGG | 0.516290 | 1.4:-6027548 | MS.gene57232:CDS |
| ATTGTTTGTGCTGCTTCTAG+TGG | 0.521546 | 1.4:-6028563 | MS.gene57232:CDS |
| GATTCATCATTGTAAGCTCC+AGG | 0.524014 | 1.4:+6025715 | None:intergenic |
| TTTATGGGCTGCTGTTCTAA+CGG | 0.540735 | 1.4:+6028752 | None:intergenic |
| TAACCCCACAAGCAAGGCAA+AGG | 0.556717 | 1.4:+6028637 | None:intergenic |
| CTTGCTTGTGGGGTTACCTG+TGG | 0.557353 | 1.4:-6028630 | MS.gene57232:CDS |
| CACAGGTAACCCCACAAGCA+AGG | 0.573824 | 1.4:+6028631 | None:intergenic |
| TTCAAGGTTAAGCCTGTACT+CGG | 0.578638 | 1.4:-6025853 | MS.gene57232:intron |
| GGAACGACGTCGATAACGAC+TGG | 0.595019 | 1.4:+6028723 | None:intergenic |
| AGATTGAAAATCACTCTAGT+CGG | 0.609573 | 1.4:-6025829 | MS.gene57232:CDS |
| ACAGTTCCAAACCAAGCCAC+AGG | 0.624924 | 1.4:+6028614 | None:intergenic |
| ATATTGCAGATGAGGAGACA+GGG | 0.660822 | 1.4:-6027559 | MS.gene57232:intron |
| AGATACATTACATTCAACAG+TGG | 0.729086 | 1.4:+6028466 | None:intergenic |
| TTGCAGATGAGGAGACAGGG+TGG | 0.732719 | 1.4:-6027556 | MS.gene57232:intron |
| GATATGGGTGAAGACTGCTG+AGG | 0.749406 | 1.4:-6026902 | MS.gene57232:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTACATATAAAATCT+TGG | - | chr1.4:6027071-6027090 | MS.gene57232:intron | 10.0% |
| !!! | GCAATAATTTTATAGTTAAA+CGG | - | chr1.4:6026838-6026857 | MS.gene57232:intron | 15.0% |
| !! | AAAAATCTTCCATATAAACA+AGG | - | chr1.4:6026635-6026654 | MS.gene57232:intron | 20.0% |
| !! | AAATATTTCTCTACAGATAT+GGG | - | chr1.4:6027660-6027679 | MS.gene57232:intron | 20.0% |
| !! | ATATCTGTAGAGAAATATTT+AGG | + | chr1.4:6027660-6027679 | None:intergenic | 20.0% |
| !! | ATTTATGTAGATGAAACTAA+CGG | - | chr1.4:6027212-6027231 | MS.gene57232:intron | 20.0% |
| !! | CAAAAACATAAATTTCCATA+AGG | + | chr1.4:6028381-6028400 | None:intergenic | 20.0% |
| !! | CATAAGGTTAAATTTAACAA+AGG | + | chr1.4:6028365-6028384 | None:intergenic | 20.0% |
| !! | CTTTGTTAAATTTAACCTTA+TGG | - | chr1.4:6028363-6028382 | MS.gene57232:intron | 20.0% |
| !! | GATCTTAAAGACTTAATATT+AGG | + | chr1.4:6028186-6028205 | None:intergenic | 20.0% |
| !! | TAAATATTTCTCTACAGATA+TGG | - | chr1.4:6027659-6027678 | MS.gene57232:intron | 20.0% |
| !! | TATCATATACGATTAATGTT+AGG | - | chr1.4:6026866-6026885 | MS.gene57232:intron | 20.0% |
| !! | TTCATCTACATAAATTCATT+GGG | + | chr1.4:6027207-6027226 | None:intergenic | 20.0% |
| !! | TTTCATCTACATAAATTCAT+TGG | + | chr1.4:6027208-6027227 | None:intergenic | 20.0% |
| !!! | ATATTGTTAGTGTTATTCAA+TGG | - | chr1.4:6026944-6026963 | MS.gene57232:intron | 20.0% |
| !!! | GAATATCAACAGATTTTAAA+AGG | + | chr1.4:6028631-6028650 | None:intergenic | 20.0% |
| !!! | TAAATAATTCCTGAATCTTT+TGG | + | chr1.4:6027944-6027963 | None:intergenic | 20.0% |
| !!! | TAATATTAATGTGTCGATTA+TGG | + | chr1.4:6027444-6027463 | None:intergenic | 20.0% |
| !!! | TTGTTTATATGGAAGATTTT+TGG | + | chr1.4:6026636-6026655 | None:intergenic | 20.0% |
| ! | ACTATACAATCCTCAATTAA+TGG | + | chr1.4:6028575-6028594 | None:intergenic | 25.0% |
| ! | ATAAAGAGAAAACAATTACC+TGG | + | chr1.4:6027055-6027074 | None:intergenic | 25.0% |
| ! | TGACATATCACAAAATATAG+TGG | + | chr1.4:6028138-6028157 | None:intergenic | 25.0% |
| ! | TGTATTTACATCTCACTTAA+GGG | + | chr1.4:6026350-6026369 | None:intergenic | 25.0% |
| ! | TTAAGACTATGTAAGTAGTA+GGG | - | chr1.4:6027867-6027886 | MS.gene57232:intron | 25.0% |
| ! | TTATCTATTACTTCCATGTA+TGG | - | chr1.4:6026155-6026174 | MS.gene57232:intron | 25.0% |
| ! | TTCAATTCATCCATTAATTG+AGG | - | chr1.4:6028562-6028581 | MS.gene57232:CDS | 25.0% |
| ! | TTCATATCATTAACGTATCA+TGG | + | chr1.4:6026922-6026941 | None:intergenic | 25.0% |
| ! | TTGTATTTACATCTCACTTA+AGG | + | chr1.4:6026351-6026370 | None:intergenic | 25.0% |
| !! | AAACTCTTTTGTAATGTTCA+AGG | - | chr1.4:6028708-6028727 | MS.gene57232:CDS | 25.0% |
| !! | ACTTGTTTGTGTTTTACTAA+GGG | - | chr1.4:6027580-6027599 | MS.gene57232:intron | 25.0% |
| !! | CAAAATCGAAGATCTTATTT+GGG | - | chr1.4:6026446-6026465 | MS.gene57232:intron | 25.0% |
| !! | TACAAGATAATTTTCATCAC+AGG | + | chr1.4:6028409-6028428 | None:intergenic | 25.0% |
| !! | TCTAAAGTCACATATATGAT+TGG | - | chr1.4:6027503-6027522 | MS.gene57232:intron | 25.0% |
| !! | TTTAAGACTATGTAAGTAGT+AGG | - | chr1.4:6027866-6027885 | MS.gene57232:intron | 25.0% |
| !!! | AACTTGTTTGTGTTTTACTA+AGG | - | chr1.4:6027579-6027598 | MS.gene57232:intron | 25.0% |
| !!! | GCTATTTTGATAAACTATCA+TGG | - | chr1.4:6026244-6026263 | MS.gene57232:intron | 25.0% |
| ACAAATGTCGTACAAAATAG+AGG | - | chr1.4:6028076-6028095 | MS.gene57232:intron | 30.0% | |
| AGATACATTACATTCAACAG+TGG | + | chr1.4:6026114-6026133 | None:intergenic | 30.0% | |
| AGATTGAAAATCACTCTAGT+CGG | - | chr1.4:6028748-6028767 | MS.gene57232:CDS | 30.0% | |
| AGTGCATAAACATATCAAGA+TGG | + | chr1.4:6028311-6028330 | None:intergenic | 30.0% | |
| ATTTCCATACCAAAAGATTC+AGG | - | chr1.4:6027932-6027951 | MS.gene57232:intron | 30.0% | |
| CCAAAATCGAAGATCTTATT+TGG | - | chr1.4:6026445-6026464 | MS.gene57232:intron | 30.0% | |
| CTCACTTGTAGTAAAACATT+AGG | - | chr1.4:6028251-6028270 | MS.gene57232:intron | 30.0% | |
| GTATTTACATCTCACTTAAG+GGG | + | chr1.4:6026349-6026368 | None:intergenic | 30.0% | |
| GTGTTAAGAAATTTGTGGAA+GGG | - | chr1.4:6026966-6026985 | MS.gene57232:intron | 30.0% | |
| TATTTAACATCGAGAGAAAC+CGG | - | chr1.4:6028826-6028845 | MS.gene57232:CDS | 30.0% | |
| TCCAAAATAAGAGTCAATGT+TGG | + | chr1.4:6026483-6026502 | None:intergenic | 30.0% | |
| TTCTGGATTACTTGTTTACT+TGG | - | chr1.4:6027115-6027134 | MS.gene57232:intron | 30.0% | |
| TTGGTATGGAAATTACTACA+AGG | + | chr1.4:6027925-6027944 | None:intergenic | 30.0% | |
| TTGTGTTGAAATTTCTTCAC+CGG | + | chr1.4:6027162-6027181 | None:intergenic | 30.0% | |
| ! | AAACGACGATTTTGTCAAAT+AGG | + | chr1.4:6028544-6028563 | None:intergenic | 30.0% |
| ! | AATTCCTGAATCTTTTGGTA+TGG | + | chr1.4:6027939-6027958 | None:intergenic | 30.0% |
| ! | ACGATTTTGTCAAATAGGAT+AGG | + | chr1.4:6028539-6028558 | None:intergenic | 30.0% |
| ! | CAATGGTGTTAAGAAATTTG+TGG | - | chr1.4:6026961-6026980 | MS.gene57232:intron | 30.0% |
| ! | CCAAATAAGATCTTCGATTT+TGG | + | chr1.4:6026448-6026467 | None:intergenic | 30.0% |
| ! | CTCTGTTTAAGTTCAAGAAA+CGG | - | chr1.4:6025786-6025805 | MS.gene57232:CDS | 30.0% |
| !! | ATTAATGTGTCGATTATGGA+TGG | + | chr1.4:6027440-6027459 | None:intergenic | 30.0% |
| !! | ATTGATTTGTTGGAGTGAAT+GGG | + | chr1.4:6025726-6025745 | None:intergenic | 30.0% |
| !!! | TCTCTTCATTTTGTTTTGGA+TGG | - | chr1.4:6027357-6027376 | MS.gene57232:intron | 30.0% |
| AATATGACACCTTAGCATAG+CGG | - | chr1.4:6028100-6028119 | MS.gene57232:intron | 35.0% | |
| ACACTGCAAGTTTCAAATTG+TGG | + | chr1.4:6028457-6028476 | None:intergenic | 35.0% | |
| ACAGTAAATGCTATAGCTCT+TGG | + | chr1.4:6027807-6027826 | None:intergenic | 35.0% | |
| ATAAGTGCTAGTGTTACCAA+TGG | - | chr1.4:6026586-6026605 | MS.gene57232:intron | 35.0% | |
| ATGGAAATTACTACAAGGCA+TGG | + | chr1.4:6027920-6027939 | None:intergenic | 35.0% | |
| ATGTTGTTGAATATGGTTCC+CGG | - | chr1.4:6025898-6025917 | MS.gene57232:intron | 35.0% | |
| CTCATCTGCAATATAAAGAG+AGG | + | chr1.4:6027012-6027031 | None:intergenic | 35.0% | |
| CTCTCTTTATATTGCAGATG+AGG | - | chr1.4:6027010-6027029 | MS.gene57232:intron | 35.0% | |
| GGTGTTAAGAAATTTGTGGA+AGG | - | chr1.4:6026965-6026984 | MS.gene57232:intron | 35.0% | |
| GGTTCATCTTTGTATGCTAT+TGG | - | chr1.4:6027092-6027111 | MS.gene57232:intron | 35.0% | |
| TAAACCAAATGACAGGACAA+GGG | + | chr1.4:6027314-6027333 | None:intergenic | 35.0% | |
| TCAGTGTATTTCGCAAATGT+TGG | - | chr1.4:6026285-6026304 | MS.gene57232:intron | 35.0% | |
| TGATTGCATCAATGTGAGAA+TGG | - | chr1.4:6026814-6026833 | MS.gene57232:intron | 35.0% | |
| TGGATTACTTGTTTACTTGG+AGG | - | chr1.4:6027118-6027137 | MS.gene57232:intron | 35.0% | |
| TGTGTTGAAATTTCTTCACC+GGG | + | chr1.4:6027161-6027180 | None:intergenic | 35.0% | |
| TGTTAGGATGTATCTTGGTT+GGG | - | chr1.4:6026061-6026080 | MS.gene57232:intron | 35.0% | |
| TTGTACTAAATAGCTCATCG+TGG | + | chr1.4:6028060-6028079 | None:intergenic | 35.0% | |
| TTGTTAGGATGTATCTTGGT+TGG | - | chr1.4:6026060-6026079 | MS.gene57232:intron | 35.0% | |
| ! | ATTTTCAATCTACCGAGTAC+AGG | + | chr1.4:6028739-6028758 | None:intergenic | 35.0% |
| ! | GGAAAAAGGGTTTTTGTTGA+TGG | + | chr1.4:6025705-6025724 | None:intergenic | 35.0% |
| ! | TTGATGGAGGGAATAGTTTT+GGG | + | chr1.4:6025689-6025708 | None:intergenic | 35.0% |
| ! | TTTGAACCAGATGCATTTTG+TGG | - | chr1.4:6028895-6028914 | MS.gene57232:CDS | 35.0% |
| !! | AAAAGGGTTTTTGTTGATGG+AGG | + | chr1.4:6025702-6025721 | None:intergenic | 35.0% |
| !! | AAAGGGTTTTTGTTGATGGA+GGG | + | chr1.4:6025701-6025720 | None:intergenic | 35.0% |
| !! | ATCTGTCATGTTTTTGCCAT+AGG | + | chr1.4:6026670-6026689 | None:intergenic | 35.0% |
| !! | GAGCTCTCTTCATTTTGTTT+TGG | - | chr1.4:6027353-6027372 | MS.gene57232:intron | 35.0% |
| !! | GATTGATTTGTTGGAGTGAA+TGG | + | chr1.4:6025727-6025746 | None:intergenic | 35.0% |
| !! | GGTAATGGTGATTGATTTGT+TGG | + | chr1.4:6025736-6025755 | None:intergenic | 35.0% |
| !! | TCTTTGTATGCTATTGGTTC+TGG | - | chr1.4:6027098-6027117 | MS.gene57232:intron | 35.0% |
| !! | TGGTTGTGATTTGTTGATAC+TGG | - | chr1.4:6027523-6027542 | MS.gene57232:intron | 35.0% |
| !!! | CTTTATTTTCCACACACTTG+TGG | + | chr1.4:6027247-6027266 | None:intergenic | 35.0% |
| !!! | GCCAACATTGACTCTTATTT+TGG | - | chr1.4:6026479-6026498 | MS.gene57232:intron | 35.0% |
| AAAAGCCCACAACAAAAAGC+CGG | + | chr1.4:6025920-6025939 | None:intergenic | 40.0% | |
| AACGACTGGTACTCGTTTAT+GGG | + | chr1.4:6025843-6025862 | None:intergenic | 40.0% | |
| ATATTGCAGATGAGGAGACA+GGG | - | chr1.4:6027018-6027037 | MS.gene57232:intron | 40.0% | |
| ATCTTGGTTGGGCTTATGTT+GGG | - | chr1.4:6026072-6026091 | MS.gene57232:intron | 40.0% | |
| ATTACCCTTGTCCTGTCATT+TGG | - | chr1.4:6027307-6027326 | MS.gene57232:intron | 40.0% | |
| CTAAACCAAATGACAGGACA+AGG | + | chr1.4:6027315-6027334 | None:intergenic | 40.0% | |
| GATTCATCATTGTAAGCTCC+AGG | + | chr1.4:6028865-6028884 | None:intergenic | 40.0% | |
| GCACAAACAATTCTCTTAGC+AGG | + | chr1.4:6026005-6026024 | None:intergenic | 40.0% | |
| GTCATTGTTGCAGTCTATAG+CGG | - | chr1.4:6026693-6026712 | MS.gene57232:intron | 40.0% | |
| GTTCAAATTCCGCTATGCTA+AGG | + | chr1.4:6028112-6028131 | None:intergenic | 40.0% | |
| GTTGGAGTGAATGGGAAAAA+GGG | + | chr1.4:6025718-6025737 | None:intergenic | 40.0% | |
| TAACGACTGGTACTCGTTTA+TGG | + | chr1.4:6025844-6025863 | None:intergenic | 40.0% | |
| TATATTGCAGATGAGGAGAC+AGG | - | chr1.4:6027017-6027036 | MS.gene57232:intron | 40.0% | |
| TATCTTGGTTGGGCTTATGT+TGG | - | chr1.4:6026071-6026090 | MS.gene57232:intron | 40.0% | |
| TGTTGGAGTGAATGGGAAAA+AGG | + | chr1.4:6025719-6025738 | None:intergenic | 40.0% | |
| TTCAAGGTTAAGCCTGTACT+CGG | - | chr1.4:6028724-6028743 | MS.gene57232:CDS | 40.0% | |
| TTGCACCTAAACCAAATGAC+AGG | + | chr1.4:6027321-6027340 | None:intergenic | 40.0% | |
| TTGTGCTCTTTCTCCATACA+TGG | + | chr1.4:6026171-6026190 | None:intergenic | 40.0% | |
| ! | CACTTTTACTTGTGTCTGTG+AGG | - | chr1.4:6028492-6028511 | MS.gene57232:CDS | 40.0% |
| ! | CTTGTCCTGTCATTTGGTTT+AGG | - | chr1.4:6027313-6027332 | MS.gene57232:intron | 40.0% |
| ! | CTTTGTTCTGTTGCTGTTGT+TGG | + | chr1.4:6025757-6025776 | None:intergenic | 40.0% |
| ! | GCTGGTGATGTTGTTGAATA+TGG | - | chr1.4:6025891-6025910 | MS.gene57232:intron | 40.0% |
| ! | GTGTCGACAAATTTCCATCA+TGG | + | chr1.4:6026747-6026766 | None:intergenic | 40.0% |
| ! | GTTCTAAGTTCTCAAAGTCC+CGG | - | chr1.4:6027140-6027159 | MS.gene57232:intron | 40.0% |
| ! | TATTTTCCACACACTTGTGG+CGG | + | chr1.4:6027244-6027263 | None:intergenic | 40.0% |
| ! | TCTGTTGCTGTTGTTGGTAA+TGG | + | chr1.4:6025751-6025770 | None:intergenic | 40.0% |
| ! | TTTATGGGCTGCTGTTCTAA+CGG | + | chr1.4:6025828-6025847 | None:intergenic | 40.0% |
| ! | TTTTCCTTTGCCTTGCTTGT+GGG | - | chr1.4:6025936-6025955 | MS.gene57232:intron | 40.0% |
| !! | ATTGTTTGTGCTGCTTCTAG+TGG | - | chr1.4:6026014-6026033 | MS.gene57232:intron | 40.0% |
| !! | GTTGATGGAGGGAATAGTTT+TGG | + | chr1.4:6025690-6025709 | None:intergenic | 40.0% |
| !! | TGATGGAGGGAATAGTTTTG+GGG | + | chr1.4:6025688-6025707 | None:intergenic | 40.0% |
| !!! | TGTTTTGGCGGTTACTTTTG+CGG | - | chr1.4:6026037-6026056 | MS.gene57232:intron | 40.0% |
| AAAGCCCACAACAAAAAGCC+GGG | + | chr1.4:6025919-6025938 | None:intergenic | 45.0% | |
| AGTGCTAGTGTTACCAATGG+TGG | - | chr1.4:6026589-6026608 | MS.gene57232:intron | 45.0% | |
| CACGGGTCATCATCAAAACA+TGG | + | chr1.4:6027984-6028003 | None:intergenic | 45.0% | |
| CTTGTGTCTGTGAGGAATTG+CGG | - | chr1.4:6028500-6028519 | MS.gene57232:CDS | 45.0% | |
| GAAAATCACTCTAGTCGGTC+TGG | - | chr1.4:6028753-6028772 | MS.gene57232:CDS | 45.0% | |
| GACAGGACAAGGGTAATATC+TGG | + | chr1.4:6027304-6027323 | None:intergenic | 45.0% | |
| GCGGTTGTTAGGATGTATCT+TGG | - | chr1.4:6026056-6026075 | MS.gene57232:intron | 45.0% | |
| TTGGCACGTGATAGACTCTT+GGG | - | chr1.4:6027700-6027719 | MS.gene57232:intron | 45.0% | |
| TTTCCTTTGCCTTGCTTGTG+GGG | - | chr1.4:6025937-6025956 | MS.gene57232:intron | 45.0% | |
| TTTGGCACGTGATAGACTCT+TGG | - | chr1.4:6027699-6027718 | MS.gene57232:intron | 45.0% | |
| ! | CTTTTCCTTTGCCTTGCTTG+TGG | - | chr1.4:6025935-6025954 | MS.gene57232:intron | 45.0% |
| !! | ATGTTTTTGCCATAGGCCCA+CGG | + | chr1.4:6026663-6026682 | None:intergenic | 45.0% |
| !! | GTGTTACCAATGGTGGATGA+TGG | - | chr1.4:6026596-6026615 | MS.gene57232:intron | 45.0% |
| !! | TGCTGCTTCTAGTGGTGTTT+TGG | - | chr1.4:6026022-6026041 | MS.gene57232:intron | 45.0% |
| !! | TGCTTCTAGTGGTGTTTTGG+CGG | - | chr1.4:6026025-6026044 | MS.gene57232:intron | 45.0% |
| !! | TGGCTTGGTTTGGAACTGTT+GGG | - | chr1.4:6025967-6025986 | MS.gene57232:intron | 45.0% |
| !!! | CGGTTACTTTTGCGGTTGTT+AGG | - | chr1.4:6026045-6026064 | MS.gene57232:intron | 45.0% |
| !!! | TAGTTTTGGGGACATGCGTA+TGG | + | chr1.4:6025676-6025695 | None:intergenic | 45.0% |
| ACAGTTCCAAACCAAGCCAC+AGG | + | chr1.4:6025966-6025985 | None:intergenic | 50.0% | |
| CAGAGTCCATCATCCACCAT+TGG | + | chr1.4:6026605-6026624 | None:intergenic | 50.0% | |
| GATATGGGTGAAGACTGCTG+AGG | - | chr1.4:6027675-6027694 | MS.gene57232:intron | 50.0% | |
| GGCTCACCACAAAATGCATC+TGG | + | chr1.4:6028904-6028923 | None:intergenic | 50.0% | |
| TAACCCCACAAGCAAGGCAA+AGG | + | chr1.4:6025943-6025962 | None:intergenic | 50.0% | |
| TCACCAGCAGCCCATGAAAA+CGG | + | chr1.4:6025879-6025898 | None:intergenic | 50.0% | |
| TCCATCATGGCGTCATGACA+TGG | + | chr1.4:6026734-6026753 | None:intergenic | 50.0% | |
| TGACCCGTGCTGTCAAATAG+CGG | - | chr1.4:6027995-6028014 | MS.gene57232:intron | 50.0% | |
| ! | AGTGCCGCTATTTGACAGCA+CGG | + | chr1.4:6028002-6028021 | None:intergenic | 50.0% |
| ! | GACGTCGTTCCCGTTTTCAT+GGG | - | chr1.4:6025866-6025885 | MS.gene57232:intron | 50.0% |
| ! | GGTGAAGACTGCTGAGGTTT+TGG | - | chr1.4:6027681-6027700 | MS.gene57232:intron | 50.0% |
| ! | TCCAGGTATTGCTCGAACTC+CGG | + | chr1.4:6028848-6028867 | None:intergenic | 50.0% |
| ! | TCTCACTTAAGGGGCACGTT+TGG | + | chr1.4:6026340-6026359 | None:intergenic | 50.0% |
| ! | TGGTTCCCGGCTTTTTGTTG+TGG | - | chr1.4:6025911-6025930 | MS.gene57232:intron | 50.0% |
| !! | CAATGGTGGATGATGGACTC+TGG | - | chr1.4:6026603-6026622 | MS.gene57232:intron | 50.0% |
| !! | CCATATAAACAAGGCGCCGT+GGG | - | chr1.4:6026644-6026663 | MS.gene57232:intron | 50.0% |
| !! | GGCTTGGTTTGGAACTGTTG+GGG | - | chr1.4:6025968-6025987 | MS.gene57232:intron | 50.0% |
| !! | GGTTCCCGGCTTTTTGTTGT+GGG | - | chr1.4:6025912-6025931 | MS.gene57232:intron | 50.0% |
| !! | GTGGCTTGGTTTGGAACTGT+TGG | - | chr1.4:6025966-6025985 | MS.gene57232:intron | 50.0% |
| !! | TCCATATAAACAAGGCGCCG+TGG | - | chr1.4:6026643-6026662 | MS.gene57232:intron | 50.0% |
| ACCGGAGTTCGAGCAATACC+TGG | - | chr1.4:6028844-6028863 | MS.gene57232:CDS | 55.0% | |
| CACAGGTAACCCCACAAGCA+AGG | + | chr1.4:6025949-6025968 | None:intergenic | 55.0% | |
| CACCAGCAGCCCATGAAAAC+GGG | + | chr1.4:6025878-6025897 | None:intergenic | 55.0% | |
| CTTGCTTGTGGGGTTACCTG+TGG | - | chr1.4:6025947-6025966 | MS.gene57232:intron | 55.0% | |
| GAGGAGACAGGGTGGTATGA+TGG | - | chr1.4:6027029-6027048 | MS.gene57232:intron | 55.0% | |
| GCCATGTCATGACGCCATGA+TGG | - | chr1.4:6026730-6026749 | MS.gene57232:intron | 55.0% | |
| GGAACGACGTCGATAACGAC+TGG | + | chr1.4:6025857-6025876 | None:intergenic | 55.0% | |
| GGCTGCTGTTCTAACGGAAC+AGG | + | chr1.4:6025822-6025841 | None:intergenic | 55.0% | |
| TTGCAGATGAGGAGACAGGG+TGG | - | chr1.4:6027021-6027040 | MS.gene57232:intron | 55.0% | |
| TTGTGGGGTTACCTGTGGCT+TGG | - | chr1.4:6025952-6025971 | MS.gene57232:intron | 55.0% | |
| ! | CGACGTCGTTCCCGTTTTCA+TGG | - | chr1.4:6025865-6025884 | MS.gene57232:intron | 55.0% |
| ! | GTGCCGCTATTTGACAGCAC+GGG | + | chr1.4:6028001-6028020 | None:intergenic | 55.0% |
| !! | CCCACGGCGCCTTGTTTATA+TGG | + | chr1.4:6026647-6026666 | None:intergenic | 55.0% |
| !! | GGGTTACCTGTGGCTTGGTT+TGG | - | chr1.4:6025957-6025976 | MS.gene57232:intron | 55.0% |
| !! | TGGTGGATGATGGACTCTGG+AGG | - | chr1.4:6026606-6026625 | MS.gene57232:intron | 55.0% |
| !! | TTCCCGTTTTCATGGGCTGC+TGG | - | chr1.4:6025873-6025892 | MS.gene57232:intron | 55.0% |
| AGTCGGTCTGGCAGCATGCT+TGG | - | chr1.4:6028765-6028784 | MS.gene57232:CDS | 60.0% | |
| GACAGGGTGGTATGATGGCC+AGG | - | chr1.4:6027034-6027053 | MS.gene57232:intron | 60.0% | |
| TGCAGTCCGCCACAAGTGTG+TGG | - | chr1.4:6027235-6027254 | MS.gene57232:intron | 60.0% | |
| !! | AACAAGGCGCCGTGGGCCTA+TGG | - | chr1.4:6026651-6026670 | MS.gene57232:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 6025660 | 6028939 | 6025660 | ID=MS.gene57232 |
| chr1.4 | mRNA | 6025660 | 6028939 | 6025660 | ID=MS.gene57232.t1;Parent=MS.gene57232 |
| chr1.4 | exon | 6028477 | 6028939 | 6028477 | ID=MS.gene57232.t1.exon1;Parent=MS.gene57232.t1 |
| chr1.4 | CDS | 6028477 | 6028939 | 6028477 | ID=cds.MS.gene57232.t1;Parent=MS.gene57232.t1 |
| chr1.4 | exon | 6027544 | 6027572 | 6027544 | ID=MS.gene57232.t1.exon2;Parent=MS.gene57232.t1 |
| chr1.4 | CDS | 6027544 | 6027572 | 6027544 | ID=cds.MS.gene57232.t1;Parent=MS.gene57232.t1 |
| chr1.4 | exon | 6026867 | 6026923 | 6026867 | ID=MS.gene57232.t1.exon3;Parent=MS.gene57232.t1 |
| chr1.4 | CDS | 6026867 | 6026923 | 6026867 | ID=cds.MS.gene57232.t1;Parent=MS.gene57232.t1 |
| chr1.4 | exon | 6025660 | 6025869 | 6025660 | ID=MS.gene57232.t1.exon4;Parent=MS.gene57232.t1 |
| chr1.4 | CDS | 6025660 | 6025869 | 6025660 | ID=cds.MS.gene57232.t1;Parent=MS.gene57232.t1 |
| Gene Sequence |
| Protein sequence |
