Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59803.t1 | RHN40480.1 | 90.4 | 415 | 25 | 1 | 1 | 415 | 1 | 400 | 6.70E-196 | 693.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59803.t1 | A0A396GHL1 | 90.4 | 415 | 25 | 1 | 1 | 415 | 1 | 400 | 4.8e-196 | 693.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049351 | MS.gene59803 | 0.843456 | 1.39E-58 | -1.69E-46 |
| MS.gene049356 | MS.gene59803 | 0.802546 | 5.33E-49 | -1.69E-46 |
| MS.gene049369 | MS.gene59803 | 0.814557 | 1.45E-51 | -1.69E-46 |
| MS.gene049794 | MS.gene59803 | 0.817378 | 3.40E-52 | -1.69E-46 |
| MS.gene049907 | MS.gene59803 | 0.817245 | 3.64E-52 | -1.69E-46 |
| MS.gene050122 | MS.gene59803 | 0.820262 | 7.53E-53 | -1.69E-46 |
| MS.gene050499 | MS.gene59803 | 0.804411 | 2.19E-49 | -1.69E-46 |
| MS.gene050520 | MS.gene59803 | 0.834937 | 2.24E-56 | -1.69E-46 |
| MS.gene050538 | MS.gene59803 | 0.83362 | 4.80E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene59803 | 0.804605 | 1.99E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene59803 | 0.822517 | 2.27E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene59803 | 0.805948 | 1.04E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene59803 | 0.806407 | 8.35E-50 | -1.69E-46 |
| MS.gene050950 | MS.gene59803 | 0.804802 | 1.81E-49 | -1.69E-46 |
| MS.gene05105 | MS.gene59803 | 0.83028 | 3.21E-55 | -1.69E-46 |
| MS.gene051255 | MS.gene59803 | 0.875109 | 3.99E-68 | -1.69E-46 |
| MS.gene051360 | MS.gene59803 | 0.837418 | 5.26E-57 | -1.69E-46 |
| MS.gene051387 | MS.gene59803 | 0.853676 | 2.04E-61 | -1.69E-46 |
| MS.gene051525 | MS.gene59803 | 0.815426 | 9.30E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene59803 | 0.806921 | 6.50E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene59803 | 0.810608 | 1.06E-50 | -1.69E-46 |
| MS.gene051858 | MS.gene59803 | 0.805832 | 1.10E-49 | -1.69E-46 |
| MS.gene051877 | MS.gene59803 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene59803 | 0.806713 | 7.20E-50 | -1.69E-46 |
| MS.gene052253 | MS.gene59803 | 0.803997 | 2.67E-49 | -1.69E-46 |
| MS.gene052346 | MS.gene59803 | 0.813824 | 2.11E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene59803 | 0.812399 | 4.32E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene59803 | 0.826411 | 2.75E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene59803 | 0.816103 | 6.57E-52 | -1.69E-46 |
| MS.gene053107 | MS.gene59803 | 0.823254 | 1.53E-53 | -1.69E-46 |
| MS.gene053169 | MS.gene59803 | 0.828963 | 6.71E-55 | -1.69E-46 |
| MS.gene053318 | MS.gene59803 | 0.812468 | 4.18E-51 | -1.69E-46 |
| MS.gene05335 | MS.gene59803 | 0.820034 | 8.49E-53 | -1.69E-46 |
| MS.gene053574 | MS.gene59803 | 0.808854 | 2.52E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene59803 | 0.800083 | 1.70E-48 | -1.69E-46 |
| MS.gene054556 | MS.gene59803 | 0.823478 | 1.36E-53 | -1.69E-46 |
| MS.gene05494 | MS.gene59803 | 0.811426 | 7.04E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene59803 | 0.823992 | 1.03E-53 | -1.69E-46 |
| MS.gene055224 | MS.gene59803 | 0.800774 | 1.23E-48 | -1.69E-46 |
| MS.gene055741 | MS.gene59803 | 0.80758 | 4.72E-50 | -1.69E-46 |
| MS.gene055744 | MS.gene59803 | 0.806537 | 7.84E-50 | -1.69E-46 |
| MS.gene055909 | MS.gene59803 | 0.839995 | 1.14E-57 | -1.69E-46 |
| MS.gene055911 | MS.gene59803 | 0.84554 | 3.81E-59 | -1.69E-46 |
| MS.gene05602 | MS.gene59803 | 0.828914 | 6.90E-55 | -1.69E-46 |
| MS.gene056407 | MS.gene59803 | 0.821938 | 3.09E-53 | -1.69E-46 |
| MS.gene056410 | MS.gene59803 | 0.824003 | 1.02E-53 | -1.69E-46 |
| MS.gene056422 | MS.gene59803 | 0.800936 | 1.14E-48 | -1.69E-46 |
| MS.gene056511 | MS.gene59803 | 0.808218 | 3.45E-50 | -1.69E-46 |
| MS.gene05666 | MS.gene59803 | 0.809521 | 1.82E-50 | -1.69E-46 |
| MS.gene056796 | MS.gene59803 | 0.829587 | 4.74E-55 | -1.69E-46 |
| MS.gene056902 | MS.gene59803 | 0.834257 | 3.33E-56 | -1.69E-46 |
| MS.gene056947 | MS.gene59803 | 0.820749 | 5.82E-53 | -1.69E-46 |
| MS.gene057331 | MS.gene59803 | 0.801556 | 8.52E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene59803 | 0.811644 | 6.31E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene59803 | 0.800481 | 1.41E-48 | -1.69E-46 |
| MS.gene05811 | MS.gene59803 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene058120 | MS.gene59803 | 0.82286 | 1.89E-53 | -1.69E-46 |
| MS.gene058130 | MS.gene59803 | 0.810246 | 1.27E-50 | -1.69E-46 |
| MS.gene058323 | MS.gene59803 | 0.808499 | 3.01E-50 | -1.69E-46 |
| MS.gene058376 | MS.gene59803 | 0.819375 | 1.20E-52 | -1.69E-46 |
| MS.gene05837 | MS.gene59803 | 0.805291 | 1.43E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene59803 | 0.806574 | 7.70E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene59803 | 0.831662 | 1.47E-55 | -1.69E-46 |
| MS.gene058948 | MS.gene59803 | 0.858735 | 6.72E-63 | -1.69E-46 |
| MS.gene05907 | MS.gene59803 | 0.81341 | 2.60E-51 | -1.69E-46 |
| MS.gene05934 | MS.gene59803 | 0.819061 | 1.42E-52 | -1.69E-46 |
| MS.gene059420 | MS.gene59803 | 0.81845 | 1.95E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene59803 | 0.803568 | 3.28E-49 | -1.69E-46 |
| MS.gene059676 | MS.gene59803 | 0.803403 | 3.54E-49 | -1.69E-46 |
| MS.gene059680 | MS.gene59803 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene59803 | 0.814443 | 1.54E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene59803 | 0.802565 | 5.28E-49 | -1.69E-46 |
| MS.gene059711 | MS.gene59803 | 0.813923 | 2.00E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene59803 | 0.803422 | 3.51E-49 | -1.69E-46 |
| MS.gene060193 | MS.gene59803 | 0.805536 | 1.27E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene59803 | 0.819671 | 1.03E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene59803 | 0.804761 | 1.85E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene59803 | 0.871772 | 5.30E-67 | -1.69E-46 |
| MS.gene06092 | MS.gene59803 | 0.811774 | 5.92E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene59803 | 0.845809 | 3.22E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59803.t1 | MTR_8g044030 | 94.537 | 421 | 17 | 1 | 1 | 415 | 1 | 421 | 0.0 | 779 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59803.t1 | AT5G59500 | 57.692 | 416 | 155 | 6 | 1 | 415 | 1 | 396 | 1.15e-164 | 468 |
| MS.gene59803.t1 | AT5G59500 | 71.528 | 288 | 82 | 0 | 128 | 415 | 8 | 295 | 1.03e-161 | 457 |
Find 87 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTATAATGCTTGCAGTTTA+TGG | 0.139273 | 8.3:-54874814 | MS.gene59803:CDS |
| GGCAAGTTCACATCCCATTT+TGG | 0.141939 | 8.3:+54874565 | None:intergenic |
| CCAACTTCTGTTGTGCAATT+TGG | 0.154490 | 8.3:-54874349 | MS.gene59803:CDS |
| CTCGCCGTCATGACCCAAAA+TGG | 0.232595 | 8.3:-54874579 | MS.gene59803:CDS |
| CTTAACTTTGCTTGCATATT+CGG | 0.243735 | 8.3:+54874144 | None:intergenic |
| TTAGCTGGACTTGGATTTAC+TGG | 0.258205 | 8.3:-54874849 | MS.gene59803:CDS |
| TTCATTGGAAATTGAGCATT+TGG | 0.258403 | 8.3:+54875104 | None:intergenic |
| TACTTAAACAAACAACAAAA+AGG | 0.259298 | 8.3:-54875146 | MS.gene59803:CDS |
| CATTGGCTTGCAGCATTTGA+AGG | 0.262632 | 8.3:-54874499 | MS.gene59803:CDS |
| TGCTCTTAAATCCTTTCTTC+TGG | 0.262743 | 8.3:-54874879 | MS.gene59803:CDS |
| TTTATGGGTTATACTGCTTT+TGG | 0.267587 | 8.3:-54874798 | MS.gene59803:CDS |
| AGAATCTATGCTGGCTTCAT+TGG | 0.292712 | 8.3:+54875089 | None:intergenic |
| ATTGACAACTAATAAATAAA+AGG | 0.297190 | 8.3:+54874109 | None:intergenic |
| CTATAATGCTTGCAGTTTAT+GGG | 0.298189 | 8.3:-54874813 | MS.gene59803:CDS |
| GATGGAGCAATCTTGGAATC+TGG | 0.331382 | 8.3:-54874450 | MS.gene59803:CDS |
| AGCTATGGAGGAGGCTTTAA+TGG | 0.336552 | 8.3:-54874191 | MS.gene59803:CDS |
| GGCAAACATATTTGAGCAAT+TGG | 0.343810 | 8.3:-54874758 | MS.gene59803:CDS |
| CACTCTAAAACTGTACCTTT+TGG | 0.351356 | 8.3:-54875318 | MS.gene59803:CDS |
| GGATGTATGTTAGCTGGACT+TGG | 0.353195 | 8.3:-54874858 | MS.gene59803:CDS |
| CCAGGTGGATGGAGCAATCT+TGG | 0.372620 | 8.3:-54874457 | MS.gene59803:CDS |
| CTACCTTGAAGGCTGGCCTT+TGG | 0.382262 | 8.3:-54874677 | MS.gene59803:CDS |
| TCTTCTGGATGTATGTTAGC+TGG | 0.387873 | 8.3:-54874864 | MS.gene59803:CDS |
| AGTGTCCGGAACCGGTTATA+TGG | 0.389277 | 8.3:-54874613 | MS.gene59803:CDS |
| TTGCATATTCGGTGTATATC+TGG | 0.394341 | 8.3:+54874155 | None:intergenic |
| TTCAGTGCAGGAATCATGAT+TGG | 0.409000 | 8.3:-54874523 | MS.gene59803:CDS |
| AAACCAAAGGCCAGCCTTCA+AGG | 0.411112 | 8.3:+54874674 | None:intergenic |
| AACTAACACGCTTAGGTCTT+GGG | 0.412113 | 8.3:+54875208 | None:intergenic |
| AATCTCCATATAACCGGTTC+CGG | 0.414018 | 8.3:+54874608 | None:intergenic |
| AAACTAACACGCTTAGGTCT+TGG | 0.420283 | 8.3:+54875207 | None:intergenic |
| GTTCCACCAGCTTATTTCAA+TGG | 0.424534 | 8.3:-54874700 | MS.gene59803:CDS |
| CATAATAATCTCCATATAAC+CGG | 0.427250 | 8.3:+54874602 | None:intergenic |
| TCAACGTTAGTGTCCGGAAC+CGG | 0.428166 | 8.3:-54874621 | MS.gene59803:CDS |
| TATTTCAATGGCTACCTTGA+AGG | 0.429721 | 8.3:-54874688 | MS.gene59803:CDS |
| TTGGAAACACATGCTTGGTC+AGG | 0.432668 | 8.3:-54874779 | MS.gene59803:CDS |
| GTCAACTTCACAACATCAAT+TGG | 0.433542 | 8.3:+54874949 | None:intergenic |
| AATTGAAAACTAACACGCTT+AGG | 0.440837 | 8.3:+54875201 | None:intergenic |
| GAAATTGAGCATTTGGGAAG+AGG | 0.452427 | 8.3:+54875111 | None:intergenic |
| GATTTACTGGCCATGGTTGG+TGG | 0.460830 | 8.3:-54874836 | MS.gene59803:CDS |
| TGAAATAAGCTGGTGGAACA+AGG | 0.470249 | 8.3:+54874704 | None:intergenic |
| CCAAATTGCACAACAGAAGT+TGG | 0.474890 | 8.3:+54874349 | None:intergenic |
| TTTCAATTGAATCACAGCTA+TGG | 0.478964 | 8.3:-54875186 | MS.gene59803:CDS |
| TGATTCCTGCACTGAACAAA+AGG | 0.485115 | 8.3:+54874530 | None:intergenic |
| ATGGAGCAATCTTGGAATCT+GGG | 0.486036 | 8.3:-54874449 | MS.gene59803:CDS |
| AGCGTTGTTGAAGAATAAAT+CGG | 0.490943 | 8.3:+54874304 | None:intergenic |
| CATATTAATAGTGCATTTCG+TGG | 0.492792 | 8.3:+54874900 | None:intergenic |
| TCAATGGCTACCTTGAAGGC+TGG | 0.494973 | 8.3:-54874684 | MS.gene59803:CDS |
| GGACTTGGATTTACTGGCCA+TGG | 0.496989 | 8.3:-54874843 | MS.gene59803:CDS |
| GCATGAAATTGTTTGTTGAA+AGG | 0.497147 | 8.3:+54875261 | None:intergenic |
| ATTGGCTTGCAGCATTTGAA+GGG | 0.501471 | 8.3:-54874498 | MS.gene59803:CDS |
| TTGGATTTACTGGCCATGGT+TGG | 0.506088 | 8.3:-54874839 | MS.gene59803:CDS |
| CTTCAAATGCTGCAAGCCAA+TGG | 0.507717 | 8.3:+54874500 | None:intergenic |
| TCATTGGAAATTGAGCATTT+GGG | 0.508386 | 8.3:+54875105 | None:intergenic |
| ATTGATGTTGTGAAGTTGAC+GGG | 0.515309 | 8.3:-54874946 | MS.gene59803:CDS |
| TTATAATGAAGCAGTAGAGT+TGG | 0.517909 | 8.3:+54874415 | None:intergenic |
| CAGGAATCATGATTGGCCAT+TGG | 0.524443 | 8.3:-54874516 | MS.gene59803:CDS |
| TCGCCGTCATGACCCAAAAT+GGG | 0.524963 | 8.3:-54874578 | MS.gene59803:CDS |
| CCTGGTGCGAGGTTAAGCTT+CGG | 0.527503 | 8.3:+54874475 | None:intergenic |
| CTAACATACATCCAGAAGAA+AGG | 0.530527 | 8.3:+54874868 | None:intergenic |
| GGATGGCGCAACAAGCGATA+AGG | 0.531266 | 8.3:+54874325 | None:intergenic |
| TTCAACAAACAATTTCATGC+TGG | 0.532421 | 8.3:-54875258 | MS.gene59803:CDS |
| CCGAAGCTTAACCTCGCACC+AGG | 0.536273 | 8.3:-54874475 | MS.gene59803:CDS |
| CTCACAATAGAGAAACCAAA+AGG | 0.537134 | 8.3:+54875303 | None:intergenic |
| AGGTAGCCATTGAAATAAGC+TGG | 0.540582 | 8.3:+54874694 | None:intergenic |
| TGGATTACTAGAATCTATGC+TGG | 0.542861 | 8.3:+54875080 | None:intergenic |
| TTATAAGCAGAAAGCAGCTA+TGG | 0.543006 | 8.3:-54874206 | MS.gene59803:CDS |
| GAACAAAAGGCGAGACCACA+TGG | 0.550227 | 8.3:+54874543 | None:intergenic |
| CCAAGATTGCTCCATCCACC+TGG | 0.554362 | 8.3:+54874457 | None:intergenic |
| TACAATGAATAGCAGACTCA+AGG | 0.556555 | 8.3:+54874246 | None:intergenic |
| TTAACCTCGCACCAGGTGGA+TGG | 0.576435 | 8.3:-54874468 | MS.gene59803:CDS |
| TGTTGTTTGTTTAAGTAACG+AGG | 0.577958 | 8.3:+54875152 | None:intergenic |
| TGCTCCATCCACCTGGTGCG+AGG | 0.585566 | 8.3:+54874464 | None:intergenic |
| AATTGATGTTGTGAAGTTGA+CGG | 0.587330 | 8.3:-54874947 | MS.gene59803:CDS |
| TTTCGTGGCTGTAGTTATGA+CGG | 0.589274 | 8.3:+54874915 | None:intergenic |
| TAAGCAGAAAGCAGCTATGG+AGG | 0.590622 | 8.3:-54874203 | MS.gene59803:CDS |
| GCAGAAAGCAGCTATGGAGG+AGG | 0.602669 | 8.3:-54874200 | MS.gene59803:CDS |
| GAGTCTGCTATTCATTGTAG+CGG | 0.631042 | 8.3:-54874242 | MS.gene59803:CDS |
| GAAATAAGCTGGTGGAACAA+GGG | 0.631852 | 8.3:+54874705 | None:intergenic |
| AGCATTATAGCCACCAACCA+TGG | 0.636978 | 8.3:+54874826 | None:intergenic |
| ACAATGAATAGCAGACTCAA+GGG | 0.637477 | 8.3:+54874247 | None:intergenic |
| AAGCTTAACCTCGCACCAGG+TGG | 0.645226 | 8.3:-54874472 | MS.gene59803:CDS |
| TAGCCATTGAAATAAGCTGG+TGG | 0.655130 | 8.3:+54874697 | None:intergenic |
| TTGTTGAAGAATAAATCGGA+TGG | 0.662311 | 8.3:+54874308 | None:intergenic |
| TAACACGCTTAGGTCTTGGG+TGG | 0.680734 | 8.3:+54875211 | None:intergenic |
| ATACTTAGCAAGATACAATG+TGG | 0.686391 | 8.3:+54874390 | None:intergenic |
| GGGATGTGAACTTGCCCATG+TGG | 0.690270 | 8.3:-54874558 | MS.gene59803:CDS |
| AACAAAAGGCGAGACCACAT+GGG | 0.690915 | 8.3:+54874544 | None:intergenic |
| TTGATGTTGTGAAGTTGACG+GGG | 0.752016 | 8.3:-54874945 | MS.gene59803:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTTAAACAAACAACAAAAA+GGG | - | chr8.3:54874314-54874333 | MS.gene59803:CDS | 20.0% |
| !! | TACTTAAACAAACAACAAAA+AGG | - | chr8.3:54874313-54874332 | MS.gene59803:CDS | 20.0% |
| !! | TATACAAAAAAGAAAACCAA+AGG | + | chr8.3:54874801-54874820 | None:intergenic | 20.0% |
| ! | CATAATAATCTCCATATAAC+CGG | + | chr8.3:54874860-54874879 | None:intergenic | 25.0% |
| ! | TAAGTATTCAGAAAAAGTAG+TGG | - | chr8.3:54875085-54875104 | MS.gene59803:CDS | 25.0% |
| !!! | TTTTTGAAGTACTTTAGAAC+TGG | + | chr8.3:54874402-54874421 | None:intergenic | 25.0% |
| AATTGAAAACTAACACGCTT+AGG | + | chr8.3:54874261-54874280 | None:intergenic | 30.0% | |
| AATTGATGTTGTGAAGTTGA+CGG | - | chr8.3:54874512-54874531 | MS.gene59803:CDS | 30.0% | |
| AGCGTTGTTGAAGAATAAAT+CGG | + | chr8.3:54875158-54875177 | None:intergenic | 30.0% | |
| ATACTTAGCAAGATACAATG+TGG | + | chr8.3:54875072-54875091 | None:intergenic | 30.0% | |
| CATATTAATAGTGCATTTCG+TGG | + | chr8.3:54874562-54874581 | None:intergenic | 30.0% | |
| CTATAATGCTTGCAGTTTAT+GGG | - | chr8.3:54874646-54874665 | MS.gene59803:CDS | 30.0% | |
| CTTAACTTTGCTTGCATATT+CGG | + | chr8.3:54875318-54875337 | None:intergenic | 30.0% | |
| GTTTAAGTAACGAGGAAAAA+TGG | + | chr8.3:54874302-54874321 | None:intergenic | 30.0% | |
| TCATTGGAAATTGAGCATTT+GGG | + | chr8.3:54874357-54874376 | None:intergenic | 30.0% | |
| TTATAATGAAGCAGTAGAGT+TGG | + | chr8.3:54875047-54875066 | None:intergenic | 30.0% | |
| TTCAACAAACAATTTCATGC+TGG | - | chr8.3:54874201-54874220 | MS.gene59803:CDS | 30.0% | |
| TTCATTGGAAATTGAGCATT+TGG | + | chr8.3:54874358-54874377 | None:intergenic | 30.0% | |
| TTGTTGAAGAATAAATCGGA+TGG | + | chr8.3:54875154-54875173 | None:intergenic | 30.0% | |
| TTTCAATTGAATCACAGCTA+TGG | - | chr8.3:54874273-54874292 | MS.gene59803:CDS | 30.0% | |
| ! | GCATGAAATTGTTTGTTGAA+AGG | + | chr8.3:54874201-54874220 | None:intergenic | 30.0% |
| ! | TCGTTACATCAACTTTTACA+TGG | - | chr8.3:54874727-54874746 | MS.gene59803:CDS | 30.0% |
| ! | TGTTGTTTGTTTAAGTAACG+AGG | + | chr8.3:54874310-54874329 | None:intergenic | 30.0% |
| !! | TTTATGGGTTATACTGCTTT+TGG | - | chr8.3:54874661-54874680 | MS.gene59803:CDS | 30.0% |
| ACAATGAATAGCAGACTCAA+GGG | + | chr8.3:54875215-54875234 | None:intergenic | 35.0% | |
| ATTGATGTTGTGAAGTTGAC+GGG | - | chr8.3:54874513-54874532 | MS.gene59803:CDS | 35.0% | |
| CTAACATACATCCAGAAGAA+AGG | + | chr8.3:54874594-54874613 | None:intergenic | 35.0% | |
| CTCACAATAGAGAAACCAAA+AGG | + | chr8.3:54874159-54874178 | None:intergenic | 35.0% | |
| GCTATAATGCTTGCAGTTTA+TGG | - | chr8.3:54874645-54874664 | MS.gene59803:CDS | 35.0% | |
| GGCAAACATATTTGAGCAAT+TGG | - | chr8.3:54874701-54874720 | MS.gene59803:CDS | 35.0% | |
| GTCAACTTCACAACATCAAT+TGG | + | chr8.3:54874513-54874532 | None:intergenic | 35.0% | |
| TACAATGAATAGCAGACTCA+AGG | + | chr8.3:54875216-54875235 | None:intergenic | 35.0% | |
| TATTTCAATGGCTACCTTGA+AGG | - | chr8.3:54874771-54874790 | MS.gene59803:CDS | 35.0% | |
| TGCTCTTAAATCCTTTCTTC+TGG | - | chr8.3:54874580-54874599 | MS.gene59803:CDS | 35.0% | |
| TGGATTACTAGAATCTATGC+TGG | + | chr8.3:54874382-54874401 | None:intergenic | 35.0% | |
| TTATAAGCAGAAAGCAGCTA+TGG | - | chr8.3:54875253-54875272 | MS.gene59803:CDS | 35.0% | |
| ! | TTTTCTTCAACGTTAGTGTC+CGG | - | chr8.3:54874832-54874851 | MS.gene59803:CDS | 35.0% |
| !! | TTGCATATTCGGTGTATATC+TGG | + | chr8.3:54875307-54875326 | None:intergenic | 35.0% |
| !!! | CACTCTAAAACTGTACCTTT+TGG | - | chr8.3:54874141-54874160 | MS.gene59803:CDS | 35.0% |
| AAACTAACACGCTTAGGTCT+TGG | + | chr8.3:54874255-54874274 | None:intergenic | 40.0% | |
| AACTAACACGCTTAGGTCTT+GGG | + | chr8.3:54874254-54874273 | None:intergenic | 40.0% | |
| AGGTAGCCATTGAAATAAGC+TGG | + | chr8.3:54874768-54874787 | None:intergenic | 40.0% | |
| ATGGAGCAATCTTGGAATCT+GGG | - | chr8.3:54875010-54875029 | MS.gene59803:CDS | 40.0% | |
| CCAAATTGCACAACAGAAGT+TGG | + | chr8.3:54875113-54875132 | None:intergenic | 40.0% | |
| CCAACTTCTGTTGTGCAATT+TGG | - | chr8.3:54875110-54875129 | MS.gene59803:CDS | 40.0% | |
| GAAATAAGCTGGTGGAACAA+GGG | + | chr8.3:54874757-54874776 | None:intergenic | 40.0% | |
| GAAATTGAGCATTTGGGAAG+AGG | + | chr8.3:54874351-54874370 | None:intergenic | 40.0% | |
| GAGTCTGCTATTCATTGTAG+CGG | - | chr8.3:54875217-54875236 | MS.gene59803:CDS | 40.0% | |
| GTTCCACCAGCTTATTTCAA+TGG | - | chr8.3:54874759-54874778 | MS.gene59803:CDS | 40.0% | |
| TAGCCATTGAAATAAGCTGG+TGG | + | chr8.3:54874765-54874784 | None:intergenic | 40.0% | |
| TCTTCTGGATGTATGTTAGC+TGG | - | chr8.3:54874595-54874614 | MS.gene59803:CDS | 40.0% | |
| TGAAATAAGCTGGTGGAACA+AGG | + | chr8.3:54874758-54874777 | None:intergenic | 40.0% | |
| TGATTCCTGCACTGAACAAA+AGG | + | chr8.3:54874932-54874951 | None:intergenic | 40.0% | |
| TTAGCTGGACTTGGATTTAC+TGG | - | chr8.3:54874610-54874629 | MS.gene59803:CDS | 40.0% | |
| TTCAGTGCAGGAATCATGAT+TGG | - | chr8.3:54874936-54874955 | MS.gene59803:CDS | 40.0% | |
| TTGATGTTGTGAAGTTGACG+GGG | - | chr8.3:54874514-54874533 | MS.gene59803:CDS | 40.0% | |
| TTTCGTGGCTGTAGTTATGA+CGG | + | chr8.3:54874547-54874566 | None:intergenic | 40.0% | |
| ! | AATCTCCATATAACCGGTTC+CGG | + | chr8.3:54874854-54874873 | None:intergenic | 40.0% |
| ! | GCAAGTTCACATCCCATTTT+GGG | + | chr8.3:54874896-54874915 | None:intergenic | 40.0% |
| !! | AGAATCTATGCTGGCTTCAT+TGG | + | chr8.3:54874373-54874392 | None:intergenic | 40.0% |
| !! | ATTGGCTTGCAGCATTTGAA+GGG | - | chr8.3:54874961-54874980 | MS.gene59803:CDS | 40.0% |
| !! | TGCTTTTGGAAACACATGCT+TGG | - | chr8.3:54874675-54874694 | MS.gene59803:CDS | 40.0% |
| AACAAAAGGCGAGACCACAT+GGG | + | chr8.3:54874918-54874937 | None:intergenic | 45.0% | |
| AGCATTATAGCCACCAACCA+TGG | + | chr8.3:54874636-54874655 | None:intergenic | 45.0% | |
| CTTCAAATGCTGCAAGCCAA+TGG | + | chr8.3:54874962-54874981 | None:intergenic | 45.0% | |
| GATGGAGCAATCTTGGAATC+TGG | - | chr8.3:54875009-54875028 | MS.gene59803:CDS | 45.0% | |
| GGATGTATGTTAGCTGGACT+TGG | - | chr8.3:54874601-54874620 | MS.gene59803:CDS | 45.0% | |
| TAAGCAGAAAGCAGCTATGG+AGG | - | chr8.3:54875256-54875275 | MS.gene59803:CDS | 45.0% | |
| TTGGAAACACATGCTTGGTC+AGG | - | chr8.3:54874680-54874699 | MS.gene59803:CDS | 45.0% | |
| TTGGATTTACTGGCCATGGT+TGG | - | chr8.3:54874620-54874639 | MS.gene59803:CDS | 45.0% | |
| ! | AGCTATGGAGGAGGCTTTAA+TGG | - | chr8.3:54875268-54875287 | MS.gene59803:CDS | 45.0% |
| ! | CAGGAATCATGATTGGCCAT+TGG | - | chr8.3:54874943-54874962 | MS.gene59803:CDS | 45.0% |
| ! | GGCAAGTTCACATCCCATTT+TGG | + | chr8.3:54874897-54874916 | None:intergenic | 45.0% |
| !! | CATCCCATTTTGGGTCATGA+CGG | + | chr8.3:54874887-54874906 | None:intergenic | 45.0% |
| !! | CATTGGCTTGCAGCATTTGA+AGG | - | chr8.3:54874960-54874979 | MS.gene59803:CDS | 45.0% |
| AAACCAAAGGCCAGCCTTCA+AGG | + | chr8.3:54874788-54874807 | None:intergenic | 50.0% | |
| AGTGTCCGGAACCGGTTATA+TGG | - | chr8.3:54874846-54874865 | MS.gene59803:CDS | 50.0% | |
| GAACAAAAGGCGAGACCACA+TGG | + | chr8.3:54874919-54874938 | None:intergenic | 50.0% | |
| GATTTACTGGCCATGGTTGG+TGG | - | chr8.3:54874623-54874642 | MS.gene59803:CDS | 50.0% | |
| GGACTTGGATTTACTGGCCA+TGG | - | chr8.3:54874616-54874635 | MS.gene59803:CDS | 50.0% | |
| TAACACGCTTAGGTCTTGGG+TGG | + | chr8.3:54874251-54874270 | None:intergenic | 50.0% | |
| TCAACGTTAGTGTCCGGAAC+CGG | - | chr8.3:54874838-54874857 | MS.gene59803:CDS | 50.0% | |
| TCAATGGCTACCTTGAAGGC+TGG | - | chr8.3:54874775-54874794 | MS.gene59803:CDS | 50.0% | |
| TCGCCGTCATGACCCAAAAT+GGG | - | chr8.3:54874881-54874900 | MS.gene59803:CDS | 50.0% | |
| ! | TCTCGCCTTTTGTTCAGTGC+AGG | - | chr8.3:54874924-54874943 | MS.gene59803:CDS | 50.0% |
| AAGCTTAACCTCGCACCAGG+TGG | - | chr8.3:54874987-54875006 | MS.gene59803:CDS | 55.0% | |
| CCAAGATTGCTCCATCCACC+TGG | + | chr8.3:54875005-54875024 | None:intergenic | 55.0% | |
| CCAGGTGGATGGAGCAATCT+TGG | - | chr8.3:54875002-54875021 | MS.gene59803:CDS | 55.0% | |
| CCTGGTGCGAGGTTAAGCTT+CGG | + | chr8.3:54874987-54875006 | None:intergenic | 55.0% | |
| CTCGCCGTCATGACCCAAAA+TGG | - | chr8.3:54874880-54874899 | MS.gene59803:CDS | 55.0% | |
| GCAGAAAGCAGCTATGGAGG+AGG | - | chr8.3:54875259-54875278 | MS.gene59803:CDS | 55.0% | |
| GGATGGCGCAACAAGCGATA+AGG | + | chr8.3:54875137-54875156 | None:intergenic | 55.0% | |
| GGGATGTGAACTTGCCCATG+TGG | - | chr8.3:54874901-54874920 | MS.gene59803:CDS | 55.0% | |
| TTAACCTCGCACCAGGTGGA+TGG | - | chr8.3:54874991-54875010 | MS.gene59803:CDS | 55.0% | |
| !! | CTACCTTGAAGGCTGGCCTT+TGG | - | chr8.3:54874782-54874801 | MS.gene59803:CDS | 55.0% |
| CCGAAGCTTAACCTCGCACC+AGG | - | chr8.3:54874984-54875003 | MS.gene59803:CDS | 60.0% | |
| TGCTCCATCCACCTGGTGCG+AGG | + | chr8.3:54874998-54875017 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 54874117 | 54875364 | 54874117 | ID=MS.gene59803 |
| chr8.3 | mRNA | 54874117 | 54875364 | 54874117 | ID=MS.gene59803.t1;Parent=MS.gene59803 |
| chr8.3 | exon | 54874117 | 54875364 | 54874117 | ID=MS.gene59803.t1.exon1;Parent=MS.gene59803.t1 |
| chr8.3 | CDS | 54874117 | 54875364 | 54874117 | ID=cds.MS.gene59803.t1;Parent=MS.gene59803.t1 |
| Gene Sequence |
| Protein sequence |
